RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7043
(167 letters)
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 190 bits (485), Expect = 2e-59
Identities = 62/122 (50%), Positives = 86/122 (70%), Gaps = 1/122 (0%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
VF+ A++D A+ GA+ASKFRN GQTC+ ANR +HE YDEF+ K E++K L VG+G
Sbjct: 235 VFDDADLDKAVDGAIASKFRNAGQTCVCANRIYVHESIYDEFVEKLVERVKKLKVGNGLD 294
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
G ++GPLIN+ + KV +V+DA+ KGAKVL GGK +G +YEPT++TD+T +M
Sbjct: 295 EGTDMGPLINERAVEKVEALVEDAVAKGAKVLTGGKR-LGLGGYFYEPTVLTDVTDDMLI 353
Query: 152 YR 153
Sbjct: 354 MN 355
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 174 bits (442), Expect = 1e-52
Identities = 66/123 (53%), Positives = 91/123 (73%), Gaps = 1/123 (0%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+VF+ A++D+A++GALASKFRN GQTC+ ANR L+ E YD+F FS+ ++ LVVGDG
Sbjct: 277 IVFDDADLDVAVKGALASKFRNSGQTCVCANRILVQEGIYDKFAEAFSKAVQKLVVGDGF 336
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMD 150
GV GPLIN+A + KV V DA+ KGAKVLLGGK + ++G +YEPT++ D+T +M
Sbjct: 337 EEGVTQGPLINEAAVQKVESHVQDAVSKGAKVLLGGKRH-SLGGTFYEPTVLGDVTEDML 395
Query: 151 CYR 153
+R
Sbjct: 396 IFR 398
>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. Succinic
semialdehyde dehydrogenase is one of three enzymes
constituting 4-aminobutyrate (GABA) degradation in both
prokaryotes and eukaryotes, catalyzing the
(NAD(P)+)-dependent catabolism reaction of succinic
semialdehyde to succinate for metabolism by the citric
acid cycle. The EC number depends on the cofactor:
1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and
1.2.1.16 if both can be used. In Escherichia coli,
succinic semialdehyde dehydrogenase is located in an
unidirectionally transcribed gene cluster encoding
enzymes for GABA degradation and is suggested to be
cotranscribed with succinic semialdehyde transaminase
from a common promoter upstream of SSADH. Similar gene
arrangements can be found in characterized Ralstonia
eutropha and the genome analysis of Bacillus subtilis.
Prokaryotic succinic semialdehyde dehydrogenases
(1.2.1.16) share high sequence homology to characterized
succinic semialdehyde dehydrogenases from rat and human
(1.2.1.24), exhibiting conservation of proposed cofactor
binding residues, and putative active sites (G-237 &
G-242, C-293 & G-259 respectively of rat SSADH).
Eukaryotic SSADH enzymes exclusively utilize NAD+ as a
cofactor, exhibiting little to no NADP+ activity. While
a NADP+ preference has been detected in prokaryotes in
addition to both NADP+- and NAD+-dependencies as in
E.coli, Pseudomonas, and Klebsiella pneumoniae. The
function of this alternative SSADH currently is unknown,
but has been suggested to play a possible role in
4-hydroxyphenylacetic degradation. Just outside the
scope of this model, are several sequences belonging to
clades scoring between trusted and noise. These
sequences may be actual SSADH enzymes, but lack
sufficiently close characterized homologs to make a
definitive assignment at this time. SSADH enzyme belongs
to the aldehyde dehydrogenase family (pfam00171),
sharing a common evolutionary origin and enzymatic
mechanism with lactaldehyde dehydrogenase. Like in
lactaldehyde dehydrogenase and succinate semialdehyde
dehydrogenase, the mammalian catalytic glutamic acid and
cysteine residues are conserved in all the enzymes of
this family (PS00687, PS00070) [Central intermediary
metabolism, Other].
Length = 448
Score = 153 bits (389), Expect = 3e-45
Identities = 57/121 (47%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+VF+ A++D A++GA+ASKFRN GQTC+ ANR +H+ YDEF K +E +K L VG+G
Sbjct: 235 IVFDDADLDQAVEGAMASKFRNAGQTCVCANRLYVHDGIYDEFAKKLAEAVKKLKVGNGL 294
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMD 150
GV GPLIN+ + KV + + DA++KGAKV+ GGK +G ++EPT+++++T +M
Sbjct: 295 DEGVTQGPLINEKAVEKVEKHIADAVEKGAKVVTGGK-RHELGGNFFEPTVLSNVTADML 353
Query: 151 C 151
Sbjct: 354 V 354
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 150 bits (382), Expect = 3e-44
Identities = 50/126 (39%), Positives = 79/126 (62%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S +VF+ A++D A++GA+ F N GQ C +A+R L+HE YDEF+ + E++K L VG
Sbjct: 210 SPLIVFDDADLDAAVKGAVFGAFGNAGQVCTAASRLLVHESIYDEFVERLVERVKALKVG 269
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
+ ++GPLI+ AQL +V ++DA +GAK+L GGK + PT++TD+ P
Sbjct: 270 NPLDPDTDMGPLISAAQLDRVLAYIEDAKAEGAKLLCGGKRLEGGKGYFVPPTVLTDVDP 329
Query: 148 EMDCYR 153
+M +
Sbjct: 330 DMPIAQ 335
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 151 bits (383), Expect = 3e-44
Identities = 49/124 (39%), Positives = 77/124 (62%), Gaps = 1/124 (0%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+VF+ A++D A++GA+ F N GQ C + +R L+HE YDEF+ + E K L VGD
Sbjct: 242 LIVFDDADLDAAVEGAVFGAFGNAGQVCTAGSRLLVHESIYDEFVERLVEAAKSLKVGDP 301
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
++GPLI+K Q +V ++DA ++GAK+L GG+ G + EPT++ D+TP+M
Sbjct: 302 LDPDTDIGPLISKKQRERVLSYIEDAKEEGAKLLCGGEAGLEKG-YFVEPTVLADVTPDM 360
Query: 150 DCYR 153
+
Sbjct: 361 RIAQ 364
>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 1-like.
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde (SSA) to succinate. SSADH
activity in Mycobacterium tuberculosis (Mtb) is encoded
by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb
GabD1 SSADH1 reportedly is an enzyme of the
gamma-aminobutyrate shunt, which forms a functional link
between two TCA half-cycles by converting
alpha-ketoglutarate to succinate.
Length = 429
Score = 142 bits (360), Expect = 3e-41
Identities = 49/122 (40%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V + A++D A++ A+ + +N GQ+CI+A RF++HE YDEF+ KF E + L VGD
Sbjct: 213 VLDDADLDKAVKTAVKGRLQNAGQSCIAAKRFIVHEDVYDEFLEKFVEAMAALKVGDPMD 272
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
++GPL K ++ V++A+ GA +LLGGK G +Y PT++TD+TP M
Sbjct: 273 EDTDLGPLARKDLRDELHEQVEEAVAAGATLLLGGKRPDGPGA-FYPPTVLTDVTPGMPA 331
Query: 152 YR 153
Y
Sbjct: 332 YD 333
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 143 bits (364), Expect = 4e-41
Identities = 54/122 (44%), Positives = 78/122 (63%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V + A++D A GA+ + F N GQ CIS R +HE YDEF+ F ++ + +G G
Sbjct: 270 VLDDADLDKAAAGAVRACFSNAGQLCISIERIYVHESIYDEFVRAFVAAVRAMRLGAGYD 329
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
++G LI++AQL V+ VDDA+ KGA VL GGK P +G L+YEPT++T +TP+M+
Sbjct: 330 YSADMGSLISEAQLETVSAHVDDAVAKGATVLAGGKARPDLGPLFYEPTVLTGVTPDMEL 389
Query: 152 YR 153
R
Sbjct: 390 AR 391
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 142 bits (361), Expect = 5e-41
Identities = 46/124 (37%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+V E A++D A+ A+ F N GQ C +A+R ++HE YDEF+ + + L VGD
Sbjct: 249 AIVLEDADLDAAVDAAVFGAFFNAGQRCTAASRLIVHESVYDEFVERLVARAASLKVGDP 308
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
++GPLI++ QL +V ++DA+ +GA++L GGK G + EPT++ +TP+M
Sbjct: 309 LDPSTDLGPLISEEQLDRVEGYIEDAVAEGARLLAGGKRP---GGYFVEPTILEGVTPDM 365
Query: 150 DCYR 153
R
Sbjct: 366 RIAR 369
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 139 bits (352), Expect = 8e-40
Identities = 52/122 (42%), Positives = 78/122 (63%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V E A++D A GA+ + F N GQ C+S R +HE YDEF+ +F + + L +G
Sbjct: 234 VLEDADLDKAAAGAVRACFSNAGQLCVSIERIYVHESVYDEFVRRFVARTRALRLGAALD 293
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
G ++G LI++AQL +VT VDDA+ KGA VL GG+ P +G +YEPT++T +T +M+
Sbjct: 294 YGPDMGSLISQAQLDRVTAHVDDAVAKGATVLAGGRARPDLGPYFYEPTVLTGVTEDMEL 353
Query: 152 YR 153
+
Sbjct: 354 FA 355
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 137 bits (346), Expect = 7e-39
Identities = 48/120 (40%), Positives = 77/120 (64%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+V + A++DLA++ + S+ NCGQ C A R +HE YDEF+ K EK+K + VGD
Sbjct: 250 IVMKDADLDLAVKAIVDSRIINCGQVCTCAERVYVHEDIYDEFMEKLVEKMKAVKVGDPF 309
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMD 150
+ ++GPL+N+A L KV +V+ A++ GA +L GGK +YEPT++T++ +M+
Sbjct: 310 DAATDMGPLVNEAALDKVEEMVERAVEAGATLLTGGKRPEGEKGYFYEPTVLTNVRQDME 369
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 131 bits (332), Expect = 5e-37
Identities = 51/122 (41%), Positives = 76/122 (62%), Gaps = 4/122 (3%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V + A++DLA+ A F + GQ C++A R L+HE YDEF+ K K K L VGD
Sbjct: 217 VLDDADLDLAVSAAAFGAFLHQGQICMAAGRILVHESVYDEFVEKLVAKAKALPVGDPRD 276
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
+GPLIN+ Q+ +V IV+DA+ GA++L GG L+Y+PT+++D+TP+M
Sbjct: 277 PDTVIGPLINERQVDRVHAIVEDAVAAGARLLTGGTYE----GLFYQPTVLSDVTPDMPI 332
Query: 152 YR 153
+R
Sbjct: 333 FR 334
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 131 bits (332), Expect = 8e-37
Identities = 47/126 (37%), Positives = 76/126 (60%), Gaps = 5/126 (3%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S N+VF+ A++D A+ G +A F GQTC++ +R L+ YDEF+ + + + + VG
Sbjct: 233 SPNIVFDDADLDAAVNGVVAGIFAAAGQTCVAGSRLLVQRSIYDEFVERLVARARAIRVG 292
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGEL----YYEPTLIT 143
D +GPL + QL KV R V A ++GA+VL GG+ P+ +L ++EPT++
Sbjct: 293 DPLDPETQMGPLATERQLEKVERYVARAREEGARVLTGGER-PSGADLGAGYFFEPTILA 351
Query: 144 DITPEM 149
D+T +M
Sbjct: 352 DVTNDM 357
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas sp.
strain 16a and other similar sequences are present in
this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde
into 4,4'-diapolycopene-diacid.
Length = 453
Score = 128 bits (323), Expect = 1e-35
Identities = 48/122 (39%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V A+++ A A+ N GQTCIS R +HE YDEF+++ K + L G +
Sbjct: 235 VLADADLERAAAAAVWGAMVNAGQTCISVERVYVHESVYDEFVARLVAKARALRPGADDI 294
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
++GP+ QL V R VDDA+ KGAK L GG G +YEPT++TD+ +MD
Sbjct: 295 GDADIGPMTTARQLDIVRRHVDDAVAKGAKALTGGAR-SNGGGPFYEPTVLTDVPHDMDV 353
Query: 152 YR 153
R
Sbjct: 354 MR 355
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 124 bits (315), Expect = 2e-34
Identities = 48/129 (37%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V +ID F N GQ C + R +HE YDEF K VVGDG
Sbjct: 230 VLPDVDIDAVAPKLFWGAFINSGQVCAAIKRLYVHESIYDEFCEALVALAKAAVVGDGLD 289
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
G +GP+ NK Q KV +V+DA KGAKVL GG+P G + PT++ D
Sbjct: 290 PGTTLGPVQNKMQYDKVKELVEDAKAKGAKVLAGGEPLDGPG-YFIPPTIVDDPPEGS-- 346
Query: 152 YRFPCRLVD 160
R+VD
Sbjct: 347 -----RIVD 350
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 122 bits (308), Expect = 2e-33
Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
N+VF A++D A+ A+ S F N G+ C++ +R L+ YDEF+ +F E+ K L VGD
Sbjct: 233 NIVFADADLDRAVDAAVRSSFSNNGEVCLAGSRILVQRSIYDEFLERFVERAKALKVGDP 292
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTI---GELYYEPTLITDIT 146
VGPLI+K L KV V+ A +GA +L GG G + EPT+IT +
Sbjct: 293 LDPDTEVGPLISKEHLEKVLGYVELARAEGATILTGGGRPELPDLEGGYFVEPTVITGLD 352
Query: 147 PEMDC 151
+
Sbjct: 353 NDSRV 357
>gnl|CDD|181826 PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed.
Length = 457
Score = 118 bits (298), Expect = 4e-32
Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+V SA++D A + A+ ++ +N GQ+CI+A RF++H YD F KF ++ L VGD
Sbjct: 239 IVMPSADLDRAAETAVTARVQNNGQSCIAAKRFIVHADVYDAFAEKFVARMAALRVGDPT 298
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMD 150
+VGPL + +V + VDDA+ GA +L GGK P +Y PT+ITDITP+M
Sbjct: 299 DPDTDVGPLATEQGRDEVEKQVDDAVAAGATILCGGKR-PDGPGWFYPPTVITDITPDMR 357
Query: 151 CYR 153
Y
Sbjct: 358 LYT 360
>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase
II-like. NAD-dependent, benzaldehyde dehydrogenase II
(XylC, BenzADH, EC=1.2.1.28) is involved in the
oxidation of benzyl alcohol to benzoate. In
Acinetobacter calcoaceticus, this process is carried out
by the chromosomally encoded, benzyl alcohol
dehydrogenase (xylB) and benzaldehyde dehydrogenase II
(xylC) enzymes; whereas in Pseudomonas putida they are
encoded by TOL plasmids.
Length = 443
Score = 117 bits (295), Expect = 1e-31
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 4/122 (3%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V + A++DLA F + GQ C++A R L+HE D + +K + K K L VGD A
Sbjct: 228 VLDDADLDLAASNGAWGAFLHQGQICMAAGRHLVHESVADAYTAKLAAKAKHLPVGDPAT 287
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
V +GPLIN QL +V IVDD++ GA++ GG T L+Y PT+++ + P M
Sbjct: 288 GQVALGPLINARQLDRVHAIVDDSVAAGARLEAGG----TYDGLFYRPTVLSGVKPGMPA 343
Query: 152 YR 153
+
Sbjct: 344 FD 345
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 117 bits (295), Expect = 2e-31
Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S N+VF+ A++D A++ A F N GQ C + +R + E YDEF+ KF + + VVG
Sbjct: 256 SPNIVFDDADLDKAVEWAAFGIFFNQGQCCCAGSRIFVQESIYDEFVEKFKARAEKRVVG 315
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYY-EPTLITDIT 146
D GP ++KAQ K+ ++ K+GA +L GG+ + + G Y+ +PT+ TD+
Sbjct: 316 DPFDPDTFQGPQVSKAQFDKILSYIESGKKEGATLLTGGERHGSKG--YFIQPTVFTDVK 373
Query: 147 PEM 149
+M
Sbjct: 374 DDM 376
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 117 bits (294), Expect = 2e-31
Identities = 50/115 (43%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+VF+ A++D A++GALASKFRN GQTC+ ANR + + YD F K + + L +GDG
Sbjct: 263 IVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAVSKLHIGDGL 322
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDI 145
GV +GPLI++ + KV + DA++KGA+V+ GGK + +G +++PT++ D+
Sbjct: 323 EKGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAH-ELGGNFFQPTILVDV 376
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 115 bits (289), Expect = 9e-31
Identities = 45/122 (36%), Positives = 75/122 (61%), Gaps = 4/122 (3%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
+ +V A+++ A++ ++ F N GQ CIS R +HE YDEF+ +F K LVVG
Sbjct: 235 AAVIVDADADLEKAVERCVSGAFANAGQVCISVQRIFVHEDIYDEFLERFVAATKKLVVG 294
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
D +VGP+I++A+ ++ V++A++ GA++L GGK + I EPT++TD+ P
Sbjct: 295 DPLDEDTDVGPMISEAEAERIEEWVEEAVEGGARLLTGGKRDGAI----LEPTVLTDVPP 350
Query: 148 EM 149
+M
Sbjct: 351 DM 352
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 113 bits (284), Expect = 5e-30
Identities = 54/126 (42%), Positives = 79/126 (62%), Gaps = 5/126 (3%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V + A++DLA++GAL S F GQ C + +R ++HE YDEF+ +F E+ K L VGDG
Sbjct: 253 VMDDADLDLALEGALWSAFGTTGQRCTATSRLIVHESVYDEFLKRFVERAKRLRVGDGLD 312
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGEL----YYEPTLITDITP 147
++GPLIN+AQL KV + ++GA +LLGG+ T G + EPT+ TD+TP
Sbjct: 313 EETDMGPLINEAQLEKVLNYNEIGKEEGATLLLGGER-LTGGGYEKGYFVEPTVFTDVTP 371
Query: 148 EMDCYR 153
+M +
Sbjct: 372 DMRIAQ 377
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 112 bits (283), Expect = 9e-30
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V + A++DLA++ L + GQ C + R ++HE YDEF+ + + K + +GD
Sbjct: 254 VMDDADLDLAVRAVLFAAVGTAGQRCTTTRRLIVHESVYDEFLERLVKAYKQVRIGDPLD 313
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGE--LYYEPTLITDITPEM 149
G VGPLIN+A + K ++ A +G VL GGK GE Y EPT++T +T +
Sbjct: 314 EGTLVGPLINQAAVEKYLNAIEIAKSQGGTVLTGGKR-IDGGEPGNYVEPTIVTGVTDDA 372
Query: 150 DCYR 153
+
Sbjct: 373 RIVQ 376
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
(Arabidopsis thaliana, EC=1.2.1.3), and similar
sequences, are in this CD. Significant improvement of
stress tolerance in tobacco plants was observed by
overexpressing the ALDH22A1 gene from maize (Zea mays)
and was accompanied by a reduction of malondialdehyde
derived from cellular lipid peroxidation.
Length = 465
Score = 111 bits (279), Expect = 2e-29
Identities = 40/122 (32%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V + A++D + F++ GQ CI R ++HEK YD+ + +++++ L G
Sbjct: 241 VLDDADLDQIASIIMRGTFQSSGQNCIGIERVIVHEKIYDKLLEILTDRVQALRQGPPLD 300
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGEL---YYEPTLITDITPE 148
V+VG +I+ A+ ++ +V DA++KGA++L GGK P Y+ PTL+ D+TP+
Sbjct: 301 GDVDVGAMISPARFDRLEELVADAVEKGARLLAGGKRYPHPEYPQGHYFPPTLLVDVTPD 360
Query: 149 MD 150
M
Sbjct: 361 MK 362
>gnl|CDD|143423 cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like.
Salicylaldehyde dehydrogenase (DoxF, SaliADH,
EC=1.2.1.65) involved in the upper naphthalene catabolic
pathway of Pseudomonas strain C18 and other similar
sequences are present in this CD.
Length = 432
Score = 110 bits (278), Expect = 3e-29
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 5/122 (4%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V E A++D A AL F N GQ C+S R ++HE DEF+ K + L G
Sbjct: 219 VLEDADLDAAANAALFGAFLNSGQICMSTERIIVHESIADEFVEKLKAAAEKLFAGP--- 275
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
V +G L++ A +V +VDDA+ KGAK+++GG + + PT++ ++TP+MD
Sbjct: 276 --VVLGSLVSAAAADRVKELVDDALSKGAKLVVGGLADESPSGTSMPPTILDNVTPDMDI 333
Query: 152 YR 153
Y
Sbjct: 334 YS 335
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 110 bits (277), Expect = 4e-29
Identities = 46/118 (38%), Positives = 76/118 (64%), Gaps = 4/118 (3%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V E A+ID A+ A+ KF + GQ C++ NR ++HE YDEF+ KF E++K L GD +
Sbjct: 249 VLEDADIDAAVNAAVFGKFLHQGQICMAINRIIVHEDVYDEFVEKFVERVKALPYGDPSD 308
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
VGPLIN++Q+ + ++ A+++GA +L+GG+ + EPT+++D+T +M
Sbjct: 309 PDTVVGPLINESQVDGLLDKIEQAVEEGATLLVGGEAEGNV----LEPTVLSDVTNDM 362
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 109 bits (275), Expect = 7e-29
Identities = 49/122 (40%), Positives = 76/122 (62%), Gaps = 4/122 (3%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V A++D A++ A F + GQ C+SA+R ++ E YDEF+ KF + L VGD
Sbjct: 237 VLADADLDYAVRAAAFGAFMHQGQICMSASRIIVEEPVYDEFVKKFVARASKLKVGDPRD 296
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
+GPLI+ Q+ ++ R V+DA+ KGAK+L GGK + +Y+PT++TD+TP+M
Sbjct: 297 PDTVIGPLISPRQVERIKRQVEDAVAKGAKLLTGGKYD----GNFYQPTVLTDVTPDMRI 352
Query: 152 YR 153
+R
Sbjct: 353 FR 354
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 108 bits (271), Expect = 3e-28
Identities = 45/124 (36%), Positives = 70/124 (56%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+VF A++D A + + N G+ C S +R L+HE D F++ + + + VGD
Sbjct: 235 QIVFADADLDAAADAVVFGVYFNAGECCNSGSRLLVHESIADAFVAAVVARSRKVRVGDP 294
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
VG +IN+AQL K+T VD +GA +LLGG+ + L+Y+PT+ TD+TP+M
Sbjct: 295 LDPETKVGAIINEAQLAKITDYVDAGRAEGATLLLGGERLASAAGLFYQPTIFTDVTPDM 354
Query: 150 DCYR 153
R
Sbjct: 355 AIAR 358
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 107 bits (269), Expect = 5e-28
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
+F+ A+++ A+ GA+ + F + GQ C + R + DEF + E+ K + +GD
Sbjct: 233 IFDDADLENAVNGAMMANFLSQGQVCSNGTRVFVQRSIKDEFTERLVERTKKIRIGDPLD 292
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGEL----YYEPTLITDITP 147
+G LI++ L KV ++ A ++GAKVL GG+ L Y P ++TD T
Sbjct: 293 EDTQMGALISEEHLEKVLGYIESAKQEGAKVLCGGERVVPEDGLENGFYVSPCVLTDCTD 352
Query: 148 EMDCYR 153
+M R
Sbjct: 353 DMTIVR 358
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 107 bits (269), Expect = 6e-28
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+V A++D A Q + F GQ+CIS R L+H YDEF S+ ++K L GD
Sbjct: 237 IVDSDADLDFAAQRIIFGAFYQAGQSCISVQRVLVHRSVYDEFKSRLVARVKALKTGDPK 296
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMD 150
+VGP+I++++ +V V++A+ GAK+L GGK EPT++ D+ P+M+
Sbjct: 297 DDATDVGPMISESEAERVEGWVNEAVDAGAKLLTGGK----RDGALLEPTILEDVPPDME 352
Query: 151 CYR 153
Sbjct: 353 VNC 355
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 106 bits (266), Expect = 8e-28
Identities = 44/121 (36%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+V + A++DLA++ + S+ N GQ C A R + + YD+F+++ E ++ + G+ A
Sbjct: 188 IVMDDADLDLAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQFVNRLGEAMQAVQFGNPA 247
Query: 91 V-SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
+ + +GPLIN A L +V + V A+++GA+V LGGK G YY PTL+ D+ EM
Sbjct: 248 ERNDIAMGPLINAAALERVEQKVARAVEEGARVALGGKAVEGKG-YYYPPTLLLDVRQEM 306
Query: 150 D 150
Sbjct: 307 S 307
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 106 bits (266), Expect = 2e-27
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S +VF A+++ A+ + + +N GQTC + +R L+H YDE + + E+ + L VG
Sbjct: 231 SPQIVFADADLEAALPVVVNAIIQNAGQTCSAGSRLLVHRSIYDEVLERLVERFRALRVG 290
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGK--PNPTIGELYYEPTLITDI 145
G + ++GPLI+ QL +V V A +GA+++ GG+ G + PTL+ D+
Sbjct: 291 PG-LEDPDLGPLISAKQLDRVEGFVARARARGARIVAGGRIAEGAPAGGYFVAPTLLDDV 349
Query: 146 TPEM 149
P+
Sbjct: 350 PPDS 353
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 105 bits (263), Expect = 4e-27
Identities = 41/124 (33%), Positives = 73/124 (58%), Gaps = 3/124 (2%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+V + A+++ A+ A+ +F N GQ C + R L+ E+ YD+F+ EK+K L VGD
Sbjct: 239 MIVLKDADLERAVSIAVRGRFENAGQVCNAVKRILVEEEVYDKFLKLLVEKVKKLKVGDP 298
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
++GPLI+ + ++ +V+DA++KG K+L GGK ++ PT++ + TP+M
Sbjct: 299 LDESTDLGPLISPEAVERMENLVNDAVEKGGKILYGGK---RDEGSFFPPTVLENDTPDM 355
Query: 150 DCYR 153
+
Sbjct: 356 IVMK 359
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
1 and 2, ALDH family 10A8 and 10A9-like. Present in
this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family 10
member A9, respectively, and are putative dehydration-
and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
oxidation of betaine aldehyde to the compatible solute
glycine betaine.
Length = 456
Score = 104 bits (261), Expect = 8e-27
Identities = 38/124 (30%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+VF+ A+++ A++ A+ F N GQ C + +R L+HE D F+ + + + + VGD
Sbjct: 237 IVFDDADLEKAVEWAMFGCFWNNGQICSATSRLLVHESIADAFLERLATAAEAIRVGDPL 296
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYY-EPTLITDITPEM 149
GV +GPL+++AQ KV + ++GA++L GG+ + + Y+ PT+ D+ +
Sbjct: 297 EEGVRLGPLVSQAQYEKVLSFIARGKEEGARLLCGGRRPAHLEKGYFIAPTVFADVPTDS 356
Query: 150 DCYR 153
+R
Sbjct: 357 RIWR 360
>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic
semialdehyde dehydrogenase-like. 4-hydroxymuconic
semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of
Pseudomonas fluorescens ACB involved in
4-hydroxyacetophenone degradation, and putative
hydroxycaproate semialdehyde dehydrogenase (ChnE) of
Brachymonas petroleovorans involved in cyclohexane
metabolism, and other similar sequences, are present in
this CD.
Length = 453
Score = 102 bits (256), Expect = 3e-26
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S N+VF A++D A++ A F N GQ C + +R L+HE YDEF+ +F+ + L G
Sbjct: 231 SANIVFADADLDAAVRAAATGIFYNQGQMCTAGSRLLVHESIYDEFLERFTSLARSLRPG 290
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
D +GPL+++AQ +V VD ++GA++L GGK P + EPT+ + P
Sbjct: 291 DPLDPKTQMGPLVSQAQFDRVLDYVDVGREEGARLLTGGK-RPGARGFFVEPTIFAAVPP 349
Query: 148 EM 149
EM
Sbjct: 350 EM 351
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 101 bits (253), Expect = 1e-25
Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S N+VF A++D A++ A + F N GQ C + +R + E YDEF+ + E+ K VVG
Sbjct: 260 SPNIVFADADLDYAVEQAHEALFFNMGQCCCAGSRTFVQESIYDEFVKRSVERAKKRVVG 319
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
+ GP I++ Q K+ +++ K+GAK+ GGK + G + +PT+ +D+T
Sbjct: 320 NPFDPKTEQGPQIDEEQFKKILELIESGKKEGAKLECGGKRHGDKG-YFIQPTVFSDVTD 378
Query: 148 EM 149
+M
Sbjct: 379 DM 380
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 101 bits (253), Expect = 1e-25
Identities = 42/121 (34%), Positives = 71/121 (58%), Gaps = 5/121 (4%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V + A++DLA++ A+ F + GQ C +++R ++ E +D F+ E+ K L VGD
Sbjct: 253 VLDDADLDLAVECAVQGAFFSTGQRCTASSRLIVTEGIHDRFVEALVERTKALKVGDALD 312
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKP--NPTIGELYY-EPTLITDITPE 148
GV++GP++++ QL K R ++ A +GAK++ GG+ P G YY P L +T +
Sbjct: 313 EGVDIGPVVSERQLEKDLRYIEIARSEGAKLVYGGERLKRPDEG--YYLAPALFAGVTND 370
Query: 149 M 149
M
Sbjct: 371 M 371
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305 and also, the Mycobacterium
tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence;
and other similar sequences, are included in this CD.
Length = 459
Score = 100 bits (252), Expect = 2e-25
Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S N+V + A++ A A+ N GQ C R L+ RYDE + + + L VG
Sbjct: 237 SANIVLDDADLAAAAPAAVGVCMHNAGQGCALTTRLLVPRSRYDEVVEALAAAFEALPVG 296
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGK-PNPTIGELYYEPTLITDIT 146
D A G +GPLI+ AQ +V + +GA+++ GG P Y EPTL D+
Sbjct: 297 DPADPGTVMGPLISAAQRDRVEGYIARGRDEGARLVTGGGRPAGLDKGFYVEPTLFADVD 356
Query: 147 PEM 149
+M
Sbjct: 357 NDM 359
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is the
NAD+-dependent, betaine aldehyde dehydrogenase (BADH,
GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the
synthesis of the osmoprotectant glycine betaine from
choline or glycine betaine aldehyde.
Length = 482
Score = 99.7 bits (249), Expect = 4e-25
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 5/124 (4%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
N+VF A+ + A+ AL F N GQ C + +R L+ E +D+F++ +E+ K + +G+G
Sbjct: 250 NIVFADADFETAVDQALNGVFFNAGQVCSAGSRLLVEESIHDKFVAALAERAKKIKLGNG 309
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGEL----YYEPTLITDI 145
+ +GPL++ KV + ++GA+++ GGK PT EL + EPT+ D+
Sbjct: 310 LDADTEMGPLVSAEHREKVLSYIQLGKEEGARLVCGGK-RPTGDELAKGYFVEPTIFDDV 368
Query: 146 TPEM 149
M
Sbjct: 369 DRTM 372
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 99.6 bits (249), Expect = 4e-25
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 28 SLNMVFESA-NIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVV 86
S N+VF A ++D A + A A F N G+ C + +R L+HE DEF+ K +
Sbjct: 239 SPNIVFADAPDLDAAAEAAAAGIFWNQGEVCSAGSRLLVHESIKDEFLEKVVAAAREWKP 298
Query: 87 GDGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKP-NPTIGELYYEPTLITDI 145
GD +G L+++A KV ++ +GA+++ GGK G + EPT+ +
Sbjct: 299 GDPLDPATRMGALVSEAHFDKVLGYIESGKAEGARLVAGGKRVLTETGGFFVEPTVFDGV 358
Query: 146 TPEMDCYR 153
TP+M R
Sbjct: 359 TPDMRIAR 366
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 97.7 bits (244), Expect = 2e-24
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
VF+ A++D ++G + N GQ C +A R YD+ ++K + + L VGD
Sbjct: 255 VFDDADLDAVVEGIRTFGYYNAGQDCTAACRIYAQRGIYDDLVAKLAAAVATLKVGDPDD 314
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKG-AKVLLGGKPNPTIGELYYEPTLITDITPEMD 150
+GPLI+ A +V V+ A G +V+ GG+ G YYEPTL+ + +
Sbjct: 315 EDTELGPLISAAHRDRVAGFVERAKALGHIRVVTGGEAPDGKG-YYYEPTLLAGARQDDE 373
Query: 151 CYR 153
+
Sbjct: 374 IVQ 376
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 97.6 bits (244), Expect = 2e-24
Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V A+++ + + F GQ C++ + + DE+I K E+ K L VG G
Sbjct: 253 VMPDADLEQTANALVGAAFGAAGQRCMALSVAVAVGDEADEWIPKLVERAKKLKVGAGDD 312
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYE------PTLITDI 145
G ++GP+I+ A ++ +++ +++GAK++L G+ G YE PT++ ++
Sbjct: 313 PGADMGPVISPAAKERIEGLIESGVEEGAKLVLDGRGVKVPG---YENGNFVGPTILDNV 369
Query: 146 TPEMDCYR 153
TP+M Y+
Sbjct: 370 TPDMKIYK 377
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the aldehyde
dehydrogenase (locus SSP0762) from Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 and other
similar sequences, are included in this CD.
Length = 466
Score = 97.2 bits (243), Expect = 3e-24
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S N++ + A+++ A+ +A+ F N GQ+C + R L+ RY E + + VVG
Sbjct: 244 SANIILDDADLEKAVPRGVAACFANSGQSCNAPTRMLVPRSRYAEAEEIAAAAAEAYVVG 303
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGEL-YY-EPTLITDI 145
D +GPL + AQ +V + I++GA+++ GG P E Y+ +PT+ D+
Sbjct: 304 DPRDPATTLGPLASAAQFDRVQGYIQKGIEEGARLVAGGPGRPEGLERGYFVKPTVFADV 363
Query: 146 TPEM 149
TP+M
Sbjct: 364 TPDM 367
>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent
gamma-aminobutyraldehyde dehydrogenase YdcW-like.
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde
dehydrogenase (ABALDH), YdcW of Escherichia coli K12,
catalyzes the oxidation of gamma-aminobutyraldehyde to
gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl
medium-chain aldehydes, but with a lower catalytic
efficiency.
Length = 450
Score = 96.2 bits (240), Expect = 6e-24
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
VF+ A++D A+ G + + N GQ C +A R +HE YDEF++ E + + VGD
Sbjct: 235 VFDDADLDAAVAGIATAGYYNAGQDCTAACRVYVHESVYDEFVAALVEAVSAIRVGDPDD 294
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDI 145
+GPL + AQ +V V+ A A+VL GG+ G +YEPT++ +
Sbjct: 295 EDTEMGPLNSAAQRERVAGFVERA-PAHARVLTGGRRAEGPG-YFYEPTVVAGV 346
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 96.0 bits (239), Expect = 7e-24
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+V A++D AI+ F + GQ CIS R +HE+ YDEFI F +K L VGD
Sbjct: 237 VIVDRDADLDAAIEALAKGGFYHAGQVCISVQRIYVHEELYDEFIEAFVAAVKKLKVGDP 296
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
+VGPLI++ +V R V++A++ GA++L GG+ + G L+ PT++ D
Sbjct: 297 LDEDTDVGPLISEEAAERVERWVEEAVEAGARLLCGGERD---GALFK-PTVLED--VPR 350
Query: 150 DC 151
D
Sbjct: 351 DT 352
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this CD
is the aldehyde dehydrogenase (PsfA, locus ACA09737) of
Pseudomonas putida involved in furoic acid metabolism.
Transcription of psfA was induced in response to
2-furoic acid, furfuryl alcohol, and furfural.
Length = 455
Score = 95.9 bits (239), Expect = 9e-24
Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+VF+ A++D A+ + GQ C++ +R L+ DE + + ++ + VG G
Sbjct: 234 CIVFDDADLDAALPKLERALTIFAGQFCMAGSRVLVQRSIADEVRDRLAARLAAVKVGPG 293
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLL-GGKPNPTIGE-LYYEPTLITDITP 147
++GPLI++A + +V R+V+ AI GA+V+L GG + + + PTL+ P
Sbjct: 294 LDPASDMGPLIDRANVDRVDRMVERAIAAGAEVVLRGGPVTEGLAKGAFLRPTLLEVDDP 353
Query: 148 EMD 150
+ D
Sbjct: 354 DAD 356
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 93.0 bits (231), Expect = 1e-22
Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
++F+ A++D+A+ AL F N G+ C++++R + E YDEF+ K EK K VVGD
Sbjct: 276 LIFDDADVDMAVDLALLGIFYNKGEICVASSRVYVQEGIYDEFVKKLVEKAKDWVVGDPF 335
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
GP ++K Q K+ ++ ++GA +L GGKP G Y EPT+ TD+T +M
Sbjct: 336 DPRARQGPQVDKQQFEKILSYIEHGKREGATLLTGGKPCGDKG-YYIEPTIFTDVTEDM 393
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 92.7 bits (231), Expect = 1e-22
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V A++D A + + F N GQ+C S R +HE YD F+ F +K +GD
Sbjct: 233 VRPDADLDAAAESLVDGAFFNSGQSCCSIERIYVHESIYDAFVEAFVAVVKGYKLGDPLD 292
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGK--PNPTIGELYYEPTLITDITPEM 149
+GP+++ V + DAI KGA+ L+ G P G Y PT++T++ M
Sbjct: 293 PSTTLGPVVSARAADFVRAQIADAIAKGARALIDGALFPEDKAGGAYLAPTVLTNVDHSM 352
Query: 150 D 150
Sbjct: 353 R 353
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde
dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
(MGR_2402) , and other similar sequences, are present in
this CD.
Length = 457
Score = 92.4 bits (230), Expect = 1e-22
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Query: 28 SLNMVFESANIDLAIQGALAS-KFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVV 86
S +VF A++D A+ GA+A +F GQ+C + +R +HE YD F+ K K+ L +
Sbjct: 230 SPMIVFPDADLDDAVDGAIAGMRFTRQGQSCTAGSRLFVHEDIYDAFLEKLVAKLSKLKI 289
Query: 87 GDGAVSGVNVGPLINKAQLTKVTRIVDDAIK-KGAKVLLGGKPNPTIGEL----YYEPTL 141
GD ++G +I++ Q KV +D + GA VL GG P G L + +PT+
Sbjct: 290 GDPLDEATDIGAIISEKQFAKVCGYIDLGLSTSGATVLRGGPL-PGEGPLADGFFVQPTI 348
Query: 142 ITDITPE 148
+ + E
Sbjct: 349 FSGVDNE 355
>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase. Under
osmotic stress, betaine aldehyde dehydrogenase oxidizes
glycine betaine aldehyde into the osmoprotectant glycine
betaine, via the second of two oxidation steps from
exogenously supplied choline or betaine aldehyde. This
choline-glycine betaine synthesis pathway can be found
in gram-positive and gram-negative bacteria. In
Escherichia coli, betaine aldehyde dehydrogenase (betB)
is osmotically co-induced with choline dehydrogenase
(betA) in the presence of choline. These dehydrogenases
are located in a betaine gene cluster with the upstream
choline transporter (betT) and transcriptional regulator
(betI). Similar to E.coli, betaine synthesis in
Staphylococcus xylosus is also influenced by osmotic
stress and the presence of choline with genes localized
in a functionally equivalent gene cluster. Organization
of the betaine gene cluster in Sinorhizobium meliloti
and Bacillus subtilis differs from that of E.coli by the
absence of upstream choline transporter and
transcriptional regulator homologues. Additionally,
B.subtilis co-expresses a type II alcohol dehydrogenase
with betaine aldehyde dehydrogenase instead of choline
dehydrogenase as in E.coli, St.xylosus, and Si.meliloti.
Betaine aldehyde dehydrogenase is a member of the
aldehyde dehydrogenase family (pfam00171) [Cellular
processes, Adaptations to atypical conditions].
Length = 467
Score = 92.6 bits (230), Expect = 2e-22
Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S +VF+ A+++ A+ GA+ F + GQ C + R +H+K + F+++ E+ + + +G
Sbjct: 247 SPLIVFDDADLESAVDGAMLGNFFSAGQVCSNGTRVFVHKKIKERFLARLVERTERIKLG 306
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGK--PNPTIGE-LYYEPTLITD 144
D +GPLI+ A KV ++ +GA + GG N + + EPT+ D
Sbjct: 307 DPFDEATEMGPLISAAHRDKVLSYIEKGKAEGATLATGGGRPENVGLQNGFFVEPTVFAD 366
Query: 145 ITPEM 149
T +M
Sbjct: 367 CTDDM 371
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 92.3 bits (230), Expect = 2e-22
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 15 KTQPRPKVMPREASLNM-------VFESANIDLAIQGALASKFRNCGQTCISANRFLIHE 67
K QP K + M V E A++D A +G + S F GQ C + +R ++HE
Sbjct: 267 KVQPGQK-WLKRVIAEMGGKNAIIVDEDADLDEAAEGIVRSAFGFQGQKCSACSRVIVHE 325
Query: 68 KRYDEFISKFSEKIKLLVVGDGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGK 127
YDEF+ + E+ K L VGD V +GP+I+K ++ R ++ K ++LLGG+
Sbjct: 326 SVYDEFLERLVERTKALKVGDPEDPEVYMGPVIDKGARDRIRRYIEIG-KSEGRLLLGGE 384
Query: 128 PNPTIGELYY-EPTLITDITPE 148
E Y+ +PT+ D+ P+
Sbjct: 385 VLELAAEGYFVQPTIFADVPPD 406
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 92.1 bits (229), Expect = 2e-22
Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 31 MVFESANIDLAIQGALAS-KFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+VF A+ + A A+A F CGQ+C S +R +HE YDE +++ E++ + VGD
Sbjct: 232 IVFPDADPEAAADAAVAGMNFTWCGQSCGSTSRLFVHESIYDEVLARVVERVAAIKVGDP 291
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTI---GELYYEPTLITDIT 146
+GPL+++ Q +V +D A ++GA+++ GG G Y EPT+ D+T
Sbjct: 292 TDPATTMGPLVSRQQYDRVMHYIDSAKREGARLVTGGGRPEGPALEGGFYVEPTVFADVT 351
Query: 147 PEMDCYR 153
P M R
Sbjct: 352 PGMRIAR 358
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 91.7 bits (228), Expect = 3e-22
Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V + A+++ A A+A + N GQ C + R L+HE DEF+ EK LVVGD
Sbjct: 236 VMDDADLERAATLAVAGSYANSGQRCTAVKRILVHESVADEFVDLLVEKSAALVVGDPMD 295
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMD 150
++G +I++ ++ V++AI +GA+VLLG + G LY PT++ + P+ +
Sbjct: 296 PATDMGTVIDEEAAIQIENRVEEAIAQGARVLLGNQRQ---GALYA-PTVLDHVPPDAE 350
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 91.4 bits (227), Expect = 4e-22
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S N+VF+ A+++ A+ F N GQ C + +R + E YD+F+ +F EK K L VG
Sbjct: 259 SPNIVFDDADLESAVVWTAYGIFFNHGQVCCAGSRIYVQEGIYDKFVKRFKEKAKKLKVG 318
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
D GP +++ Q ++ ++ +GA V GGK + G + EPT+ TD+T
Sbjct: 319 DPFAEDTFQGPQVSQIQYERIMSYIESGKAEGATVETGGKRHGNEG-YFIEPTIFTDVTE 377
Query: 148 EM 149
+M
Sbjct: 378 DM 379
>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus
AldA1 (SACOL0154) aldehyde dehydrogenase-like.
Uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences are present in this CD.
Length = 475
Score = 91.0 bits (226), Expect = 4e-22
Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 3/125 (2%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S N++F+ AN D A++GA N GQ C + +R + E YDEF++K EK + + VG
Sbjct: 249 SANIIFDDANWDKALEGAQLGILFNQGQVCCAGSRIFVQEGIYDEFVAKLKEKFENVKVG 308
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGK---PNPTIGELYYEPTLITD 144
+ +G +NK QL K+ VD A ++GAK+L GG N + EPTLI +
Sbjct: 309 NPLDPDTQMGAQVNKDQLDKILSYVDIAKEEGAKILTGGHRLTENGLDKGFFIEPTLIVN 368
Query: 145 ITPEM 149
+T +M
Sbjct: 369 VTNDM 373
>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with
similarity to Tortula ruralis aldehyde dehydrogenase
ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus
RL0313) with sequence similarity to the moss Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123)
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 455
Score = 90.9 bits (226), Expect = 5e-22
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+V SA++D I + F + GQ C+S R + + D+F + + + LVVGD
Sbjct: 239 IVDRSADLDAMIPPLVKGGFYHAGQVCVSVQRVFVPAEIADDFAQRLAAAAEKLVVGDPT 298
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMD 150
VGPLI ++ +V V++A+ GA++L GGK + + Y PT++ D P D
Sbjct: 299 DPDTEVGPLIRPREVDRVEEWVNEAVAAGARLLCGGKR---LSDTTYAPTVLLD--PPRD 353
Query: 151 C 151
Sbjct: 354 A 354
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present in
this CD. The active site cysteine and glutamate residues
are not conserved in the human ALDH16A1 protein
sequence.
Length = 480
Score = 90.5 bits (225), Expect = 7e-22
Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S +VF+ A++D A++G + + + N GQ C + +R L+ E +E I K E++ L VG
Sbjct: 260 SPFIVFDDADLDSAVEGIVDAIWFNQGQVCCAGSRLLVQESVAEELIRKLKERMSHLRVG 319
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
D +++G +++ AQL ++ +V++ +GA V G P+ G +Y PTL T++ P
Sbjct: 320 DPLDKAIDMGAIVDPAQLKRIRELVEEGRAEGADVFQPGADLPSKG-PFYPPTLFTNVPP 378
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 90.3 bits (225), Expect = 8e-22
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V + A++D A+ G + + N GQ C++ R L+ RYDE + + + L VGD
Sbjct: 254 VLDDADLDAAVPGLVPASLMNNGQVCVALTRILVPRSRYDEVVEALAAAVAALKVGDPLD 313
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYY-EPTLITDITPEM 149
+GPL + Q +V + +GA+++ GG + ++ EPTL D+ +M
Sbjct: 314 PATQIGPLASARQRERVEGYIAKGRAEGARLVTGGGRPAGLDRGWFVEPTLFADVDNDM 372
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 90.5 bits (225), Expect = 9e-22
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIK-LLVVGDG 89
+VFE A++D A++ A A N GQ C + +R + E YD+F+ KF E +K VG
Sbjct: 261 LVFEDADLDQAVKWAAAGIMYNSGQNCTATSRIYVQESIYDKFVEKFVEHVKQNYKVGSP 320
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGE--LYYEPTLITDITP 147
VGP ++K Q +V ++ K+GAK++ GG+ P + PT+ TD+
Sbjct: 321 FDDDTVVGPQVSKTQYDRVLSYIEKGKKEGAKLVYGGEKAPEGLGKGYFIPPTIFTDVPQ 380
Query: 148 EMDCYR 153
+M +
Sbjct: 381 DMRIVK 386
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4,
B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 90.2 bits (224), Expect = 1e-21
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+V E A++D A++ A + F N GQ C + +R +HE YDEF+ K + VVGD
Sbjct: 259 IVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARALKRVVGDPF 318
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMD 150
GV GP ++K Q K+ ++ ++GA ++ GG + G Y +PT+ +D+ +M
Sbjct: 319 RKGVEQGPQVDKEQFEKILSYIEHGKEEGATLITGGDRIGSKG-YYIQPTIFSDVKDDMK 377
Query: 151 CYR 153
R
Sbjct: 378 IAR 380
>gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase
AlkH-like. Aldehyde dehydrogenase AlkH (locus name
P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows
Pseudomonas putida to metabolize alkanes and the
aldehyde dehydrogenase AldX of Bacillus subtilis (locus
P46329, EC=1.2.1.3), and similar sequences, are present
in this CD.
Length = 433
Score = 89.2 bits (222), Expect = 2e-21
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKI-KLLVVGDGA 90
V E+A++ A + KF N GQTCI+ + +HE D F+ +I K
Sbjct: 215 VDETADLKKAAKKIAWGKFLNAGQTCIAPDYVFVHESVKDAFVEHLKAEIEKFYGKDAAR 274
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMD 150
+ ++ ++N ++ ++DDA+ KGAKV GG+ + + Y PT++T++TP+M
Sbjct: 275 KASPDLARIVNDRHFDRLKGLLDDAVAKGAKVEFGGQFDAA--QRYIAPTVLTNVTPDMK 332
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene degradation,
and the Novosphingobium aromaticivorans NahF
salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 88.7 bits (220), Expect = 4e-21
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
+ A+ID ++G L + F + GQ C + RF +H ++DE ++K + + VG
Sbjct: 259 FLKDADIDWVVEGLLTAGFLHQGQVCAAPERFYVHRSKFDELVTKLKQALSSFQVGSPMD 318
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYY-EPTLI 142
V GPL N+ KV +DDA +G +++ GG+ GE Y+ +PTL+
Sbjct: 319 ESVMFGPLANQPHFDKVCSYLDDARAEGDEIVRGGEALA--GEGYFVQPTLV 368
>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase.
Length = 503
Score = 88.3 bits (219), Expect = 5e-21
Identities = 43/139 (30%), Positives = 75/139 (53%), Gaps = 8/139 (5%)
Query: 23 MPREASLNM-------VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFIS 75
M + SL + VF+ ++D A++ A+ F GQ C + +R L+HE+ EF+
Sbjct: 253 MVKPVSLELGGKSPIIVFDDVDLDKAVEWAMFGCFWTNGQICSATSRLLVHERIASEFLE 312
Query: 76 KFSEKIKLLVVGDGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGEL 135
K + K + + D G +GP++++ Q KV + + A +GA +L GGK + +
Sbjct: 313 KLVKWAKNIKISDPLEEGCRLGPVVSEGQYEKVLKFISTAKSEGATILCGGKRPEHLKKG 372
Query: 136 YY-EPTLITDITPEMDCYR 153
++ EPT+ITD+T M +R
Sbjct: 373 FFIEPTIITDVTTSMQIWR 391
>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.
Length = 488
Score = 87.6 bits (218), Expect = 8e-21
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
VF+ A++D A A+ + F + GQ C + R + + F ++ E+++ + +GD
Sbjct: 259 VFDDADLDRAADIAMLANFYSSGQVCTNGTRVFVQKSIKAAFEARLLERVERIRIGDPMD 318
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGK---PNPTIGELYYEPTLITDITPE 148
N GPL++ A KV ++ +GA++L GG+ + PT+ TD T +
Sbjct: 319 PATNFGPLVSFAHRDKVLGYIEKGKAEGARLLCGGERLTEGGFANGAFVAPTVFTDCTDD 378
Query: 149 M 149
M
Sbjct: 379 M 379
>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde
dehydrogenase. This model represents the dehydrogenase
responsible for the conversion of
5-carboxymethyl-2-hydroxymuconate semialdehyde to
5-carboxymethyl-2-hydroxymuconate (a tricarboxylic
acid). This is the step in the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate
following the oxidative opening of the aromatic ring.
Length = 488
Score = 87.2 bits (216), Expect = 1e-20
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+VF+ A+++ A+ + F G+ C +++R L+ E ++F+ K E+++ + VG
Sbjct: 252 IVFDDADLERALDAVVFMIFSFNGERCTASSRLLVQESIAEDFVEKLVERVRAIRVGHPL 311
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGEL------YYEPTLITD 144
VGPLI+ L KV V+ A K+GA +L+GG+ PT Y PT+ T
Sbjct: 312 DPETEVGPLIHPEHLAKVLGYVEAAEKEGATILVGGERAPTFRGEDLGRGNYVLPTVFTG 371
Query: 145 ITPEM 149
M
Sbjct: 372 ADNHM 376
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase
(FTHFDH, EC=1.5.1.6), also known as aldehyde
dehydrogenase family 1 member L1 (ALDH1L1) in humans, is
a multi-domain homotetramer with an N-terminal formyl
transferase domain and a C-terminal ALDH domain. FTHFDH
catalyzes an NADP+-dependent dehydrogenase reaction
resulting in the conversion of 10-formyltetrahydrofolate
to tetrahydrofolate and CO2. The ALDH domain is also
capable of the oxidation of short chain aldehydes to
their corresponding acids.
Length = 486
Score = 86.4 bits (214), Expect = 2e-20
Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
++F ++D A++ ++S F N G+ CI+A R + E +DEF+ + E++K + +GD
Sbjct: 265 IIFADCDMDKAVRMGMSSVFFNKGENCIAAGRLFVEESIHDEFVRRVVEEVKKMKIGDPL 324
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
+ GP +KA L K+ + +K+GA ++ GGK G ++EPT+ TD+ M
Sbjct: 325 DRSTDHGPQNHKAHLDKLVEYCERGVKEGATLVYGGKQVDRPG-FFFEPTVFTDVEDHM 382
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 85.3 bits (212), Expect = 5e-20
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V A+++LA + + GQ C + R L+HE DE + E++ L VG
Sbjct: 257 VLPDADLELAAKEIVKGALSYSGQRCTAIKRVLVHESVADELVELLKEEVAKLKVGMPWD 316
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
+GV++ PLI+ V ++DDA+ KGA VL GG G PTL+ +TP+M
Sbjct: 317 NGVDITPLIDPKSADFVEGLIDDAVAKGATVLNGGG---REGGNLIYPTLLDPVTPDMRL 373
Query: 152 YR 153
Sbjct: 374 AW 375
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 83.8 bits (207), Expect = 2e-19
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+V E A+I+LA Q A S F GQ C + +R ++HEK YDE + +F E + L VG
Sbjct: 290 IVDEDADIELAAQSAFTSAFGFAGQKCSAGSRAVVHEKVYDEVVERFVEITESLKVGPPD 349
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
+ V VGP+I++ K+ ++ +G +++ GG + + G + PT+ D+
Sbjct: 350 SADVYVGPVIDQKSFNKIMEYIEIGKAEG-RLVSGGCGDDSKG-YFIGPTIFADVDR 404
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 83.0 bits (206), Expect = 4e-19
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V E A++DLA++ L + GQ C + R ++HE YDE + + + K + +GD
Sbjct: 253 VMEDADLDLAVRAVLFAAVGTAGQRCTTTRRLIVHESIYDEVLERLKKAYKQVRIGDPLD 312
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLIT 143
G VGPL KA + +++A +G VL GGK Y EPT++
Sbjct: 313 DGTLVGPLHTKAAVDNYLAAIEEAKSQGGTVLFGGK-VIDGPGNYVEPTIVE 363
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 82.7 bits (205), Expect = 4e-19
Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V E A++DLA + +AS F GQ C + +R ++HE YDE + K E K L VG+
Sbjct: 295 VDEDADLDLAAESIVASAFGFSGQKCSACSRAIVHEDVYDEVLEKVVELTKELTVGNPE- 353
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYY-EPTLITDITPE 148
+GP+IN+A K+ ++ K+ +++LGG+ + + G Y+ +PT+ D+ P+
Sbjct: 354 DNAYMGPVINQASFDKIMSYIEIG-KEEGRLVLGGEGDDSKG--YFIQPTIFADVDPK 408
>gnl|CDD|184426 PRK13968, PRK13968, putative succinate semialdehyde dehydrogenase;
Provisional.
Length = 462
Score = 80.3 bits (198), Expect = 3e-18
Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+V A+++LA++ A+A +++N GQ C +A RF+I E F +F L +GD
Sbjct: 242 IVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIIEEGIASAFTERFVAAAAALKMGDPR 301
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMD 150
+GP+ ++ V+ + +GA++LLGG+ G YY PT++ ++TPEM
Sbjct: 302 DEENALGPMARFDLRDELHHQVEATLAEGARLLLGGEKIAGAGN-YYAPTVLANVTPEMT 360
Query: 151 CYR 153
+R
Sbjct: 361 AFR 363
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 79.9 bits (197), Expect = 5e-18
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+V E A++D A++ A + F N GQ C + +R +HE+ YDEF+ K + VVGD
Sbjct: 313 IVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRVVGDPF 372
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
GV GP I+ Q K+ R + ++ GA + GG + G Y +PT+ +++ +M
Sbjct: 373 KKGVEQGPQIDSEQFEKILRYIKSGVESGATLECGGDRFGSKG-YYIQPTVFSNVQDDM 430
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II and Staphylococcus aureus
AldA1 (SACOL0154)-like. Included in this CD is the
NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII,
AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus
H16 involved in the catabolism of acetoin and ethanol,
and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane, as
well as, the uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences.
Length = 480
Score = 78.5 bits (194), Expect = 1e-17
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 28 SLNMVFESA-----NIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIK 82
S N+ F+ A + D + N G+ C +R L+ E YDEFI + E+ +
Sbjct: 249 SPNIFFDDAMDADDDFDDKAEEGQLGFAFNQGEVCTCPSRALVQESIYDEFIERAVERFE 308
Query: 83 LLVVGDGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGEL---YYEP 139
+ VG+ +G ++K QL K+ VD ++GA+VL GG+ G +YEP
Sbjct: 309 AIKVGNPLDPETMMGAQVSKDQLEKILSYVDIGKEEGAEVLTGGERLTLGGLDKGYFYEP 368
Query: 140 TLITDITPEM 149
TLI +M
Sbjct: 369 TLIKGGNNDM 378
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 74.5 bits (184), Expect = 3e-16
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 8/120 (6%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V + AN+++A + KF N GQTCI+ + L+HE DE I + + IK D
Sbjct: 215 VDKDANLEVAARRIAWGKFLNAGQTCIAPDYVLVHESIKDELIEELKKAIKEFYGEDPKE 274
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
S + G +IN+ ++ ++DD KV++GG+ + E Y PT++ D++P+
Sbjct: 275 SP-DYGRIINERHFDRLASLLDD-----GKVVIGGQVDK--EERYIAPTILDDVSPDSPL 326
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 74.0 bits (182), Expect = 5e-16
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 4/127 (3%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+VF + D A+ G L S F N GQ C+ R + +D F++ + + L +G
Sbjct: 257 IVFADCDFDAAVAGILRSAFLNTGQVCLGTERVYVERPIFDRFVAALKARAESLKIGVPD 316
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGK----PNPTIGELYYEPTLITDIT 146
N+GPLI+ KV A+++GA V+ GG + G + +PT+ T +
Sbjct: 317 DPATNMGPLISAEHRDKVLSYYALAVEEGATVVTGGGVPDFGDALAGGAWVQPTIWTGLP 376
Query: 147 PEMDCYR 153
Sbjct: 377 DSARVVT 383
>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase
ywdH-like. Uncharacterized Bacillus subtilis ywdH
aldehyde dehydrogenase (locus P39616) most closely
related to the ALDHs and fatty ALDHs of families 3 and
14, and similar sequences, are included in this CD.
Length = 449
Score = 73.3 bits (181), Expect = 8e-16
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V E AN+ LA + + KF N GQTC++ + L+HE ++FI + E+IK G+ +
Sbjct: 215 VDEDANLKLAAKRIVWGKFLNAGQTCVAPDYVLVHESVKEKFIKELKEEIKKF-YGEDPL 273
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
+ G +IN+ ++ ++D+ K++ GG + LY EPT++ ++T +
Sbjct: 274 ESPDYGRIINEKHFDRLAGLLDN-----GKIVFGGNTDR--ETLYIEPTILDNVTWDD 324
>gnl|CDD|132294 TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde
dehydrogenase. This family of genes are members of the
pfam00171 NAD-dependent aldehyde dehydrogenase family.
These genes are observed in Ralstonia eutropha JMP134,
Sinorhizobium meliloti 1021, Burkholderia mallei ATCC
23344, Burkholderia thailandensis E264, Burkholderia
cenocepacia AU 1054, Burkholderia pseudomallei K96243
and 1710b, Burkholderia xenovorans LB400, Burkholderia
sp. 383 and Polaromonas sp. JS666 in close proximity to
the PhnW gene (TIGR02326) encoding 2-aminoethyl
phosphonate aminotransferase (which generates
phosphonoacetaldehyde) and PhnA (TIGR02335) encoding
phosphonoacetate hydrolase (not to be confused with the
alkylphosphonate utilization operon protein PhnA modeled
by TIGR00686). Additionally, transporters believed to be
specific for 2-aminoethyl phosphonate are often present.
PhnW is, in other organisms, coupled with PhnX
(TIGR01422) for the degradation of phosphonoacetaldehyde
(GenProp0238), but PhnX is apparently absent in each of
the organisms containing this aldehyde reductase. PhnA,
characterized in a strain of Pseudomonas fluorescens
that has not het been genome sequenced, is only rarely
found outside of the PhnW and aldehyde dehydrogenase
context. For instance in Rhodopseudomonas and Bordetella
bronchiseptica, where it is adjacent to transporters
presumably specific for the import of phosphonoacetate.
It seems reasonably certain then, that this enzyme
catalyzes the NAD-dependent oxidation of
phosphonoacetaldehyde to phosphonoacetate, bridging the
metabolic gap between PhnW and PhnA. We propose the name
phosphonoacetaldehyde dehydrogenase and the gene symbol
PhnY for this enzyme.
Length = 472
Score = 68.7 bits (168), Expect = 3e-14
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+V E A++D A A+ ++N GQ C + R L+ E D F EK + GD
Sbjct: 254 IVMEDADLDRAADLAVKGSYKNSGQRCTAVKRMLVQESVADRFTELLVEKTRAWRYGDPM 313
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMD 150
V++G +I++A V++AI +GA++LLG + G L Y PT++ + P M
Sbjct: 314 DPSVDMGTVIDEAAAILFEARVNEAIAQGARLLLGNVRD---GAL-YAPTVLDRVDPSMT 369
Query: 151 CYR 153
R
Sbjct: 370 LVR 372
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 68.4 bits (168), Expect = 4e-14
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKF 77
S +V E A++D A++GA+ F N GQ C +A+R L+HE YDEF+ K
Sbjct: 206 SPVIVDEDADLDAAVEGAVFGAFFNAGQICTAASRLLVHESIYDEFVEKL 255
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 67.7 bits (165), Expect = 6e-14
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+VF+ A+ID ++G F N GQ C +A R YD + K + L G
Sbjct: 253 IVFDDADIDAVVEGVRTFGFYNAGQDCTAACRIYAQRGIYDTLVEKLGAAVATLKSGAPD 312
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKG-AKVLLGGKPNPTIGELYYEPTLITD 144
+GPL + A L +V + V++A G KV+ GG+ G Y+ PTL+
Sbjct: 313 DESTELGPLSSLAHLERVMKAVEEAKALGHIKVITGGEKRKGNG-YYFAPTLLAG 366
>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like.
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of
Pseudomonas sp. strain HR199 (CalB) which catalyzes the
NAD+-dependent oxidation of coniferyl aldehyde to
ferulic acid, and similar sequences, are present in this
CD.
Length = 434
Score = 67.5 bits (166), Expect = 9e-14
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
+ A++ A + K N GQTC++ + L+ E + +EF++ + + A
Sbjct: 216 IAPDADLAKAAERIAFGKLLNAGQTCVAPDYVLVPEDKLEEFVAAAKAAVAKM-YPTLA- 273
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVL-LGGKPNPTIGELYYEPTLITDITPEMD 150
+ +IN+ ++ +++DA KGA+V+ L PTL+ ++T +M
Sbjct: 274 DNPDYTSIINERHYARLQGLLEDARAKGARVIELNPAGEDFAATRKLPPTLVLNVTDDMR 333
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3 members,
and similar fungal sequences, are present in this CD.
Length = 436
Score = 64.9 bits (159), Expect = 7e-13
Identities = 29/117 (24%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V ++A+++LA + L KF N GQ C++ + L+ YDEF+ + + + GA
Sbjct: 223 VTKNADLELAAKRILWGKFGNAGQICVAPDYVLVDPSVYDEFVEELKKVLDEF-YPGGAN 281
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPE 148
+ + ++N ++ ++D KG KV++GG+ + + PT+++D++ +
Sbjct: 282 ASPDYTRIVNPRHFNRLKSLLDTT--KG-KVVIGGEMDE--ATRFIPPTIVSDVSWD 333
>gnl|CDD|166060 PLN02419, PLN02419, methylmalonate-semialdehyde dehydrogenase
[acylating].
Length = 604
Score = 64.4 bits (156), Expect = 1e-12
Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 10/129 (7%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANR--FLIHEKRYDEFISKFSEKIKLLVVGD 88
+V ANID + LA+ F GQ C++ + F+ K +++ K E+ K L V
Sbjct: 365 LVLPDANIDATLNALLAAGFGAAGQRCMALSTVVFVGDAKSWED---KLVERAKALKVTC 421
Query: 89 GAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGK----PNPTIGELYYEPTLITD 144
G+ ++GP+I+K ++ R++ + GAK+LL G+ P G + PT+++
Sbjct: 422 GSEPDADLGPVISKQAKERICRLIQSGVDDGAKLLLDGRDIVVPGYEKGN-FIGPTILSG 480
Query: 145 ITPEMDCYR 153
+TP+M+CY+
Sbjct: 481 VTPDMECYK 489
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase
has been characterized in both prokaryotes and
eukaryotes, functioning as a mammalian tetramer and a
bacterial homodimer. Although similar in monomeric
molecular mass and enzymatic activity, the N-terminal
sequence in P.aeruginosa does not correspond with the
N-terminal sequence predicted for rat liver. Sequence
homology to a variety of prokaryotic and eukaryotic
aldehyde dehydrogenases places MMSDH in the aldehyde
dehydrogenase (NAD+) superfamily (pfam00171), making
MMSDH's CoA requirement unique among known ALDHs.
Methylmalonate semialdehyde dehydrogenase is closely
related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class 1
and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade with
Listeria and Sulfolobus. This Bacillus protein has been
suggested to be located in an iol operon and/or involved
in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present in
Bacillus, Listeria, and Sulfolobus [Energy metabolism,
Amino acids and amines].
Length = 477
Score = 63.7 bits (155), Expect = 2e-12
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+V A+ D A + + + GQ C+ A + DE++ + E+ + + +G G
Sbjct: 252 VVMPDADKDAAADALVGAAYGAAGQRCM-AISAAVLVGAADEWVPEIRERAEKIRIGPGD 310
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYE------PTLITD 144
G +GPLI +V ++ +GA+VLL G+ G YE PTL+
Sbjct: 311 DPGAEMGPLITPQAKDRVASLIAGGAAEGAEVLLDGRGYKVDG---YEEGNWVGPTLLER 367
Query: 145 ITPEMDCYR 153
+ P M Y+
Sbjct: 368 VPPTMKAYQ 376
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 63.4 bits (154), Expect = 3e-12
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 4/127 (3%)
Query: 28 SLNMVF-ESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVV 86
S N+VF + ++ A A F N GQ CI+ R L+ E DEF++ ++ +
Sbjct: 272 SANIVFADCPDLQQAASATAAGIFYNQGQVCIAGTRLLLEESIADEFLALLKQQAQNWQP 331
Query: 87 GDGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDIT 146
G +G LI+ A V + + KG ++LL G+ PT+ D+
Sbjct: 332 GHPLDPATTMGTLIDCAHADSVHSFIREGESKG-QLLLDGRNAGLAA--AIGPTIFVDVD 388
Query: 147 PEMDCYR 153
P R
Sbjct: 389 PNASLSR 395
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 63.1 bits (154), Expect = 3e-12
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 35 SANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAVSGV 94
S N+ +A + KF N GQTC++ + L+H D+FI E IK D S
Sbjct: 227 SCNLKVAARRIAWGKFLNAGQTCVAPDYVLVHRSIKDKFIEALKEAIKEFFGEDPKKSE- 285
Query: 95 NVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
+ ++N+ ++ ++ D G KV+ GG+ + I Y PT+I + +
Sbjct: 286 DYSRIVNEFHTKRLAELIKD---HGGKVVYGGEVD--IENKYVAPTIIVNPDLDSPL 337
>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II-like. Included in this CD
is the NAD+-dependent, acetaldehyde dehydrogenase II
(AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes)
eutrophus H16 involved in the catabolism of acetoin and
ethanol, and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane. These
proteins apparently require RpoN factors for expression.
Length = 479
Score = 60.5 bits (147), Expect = 2e-11
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 28 SLNMVFES------ANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKI 81
S N+ F A D A++G + N G+ C +R LI E YD F+ + E++
Sbjct: 249 SPNIFFADVMDADDAFFDKALEGFVMFAL-NQGEVCTCPSRALIQESIYDRFMERALERV 307
Query: 82 KLLVVGDGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGEL---YYE 138
K + G+ + +G + QL K+ +D ++GA+VL GG+ N G L YY
Sbjct: 308 KAIKQGNPLDTETMIGAQASLEQLEKILSYIDIGKEEGAEVLTGGERNELGGLLGGGYYV 367
Query: 139 PTLI 142
PT
Sbjct: 368 PTTF 371
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 59.9 bits (145), Expect = 4e-11
Identities = 32/118 (27%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+V E+A+ +L ++G + S F GQ C +A+R ++ + Y+ + + ++ + L VG
Sbjct: 277 IVDETADFELVVEGVVVSAFGFQGQKCSAASRLILTQGAYEPVLERLLKRAERLSVGPPE 336
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPE 148
+G ++GP+I+ Q KV + + K +++LGGK G + PT++ ++ P+
Sbjct: 337 ENGTDLGPVIDAEQEAKVLSYI-EHGKNEGQLVLGGKRLEGEGY-FVAPTVVEEVPPK 392
>gnl|CDD|177949 PLN02315, PLN02315, aldehyde dehydrogenase family 7 member.
Length = 508
Score = 59.8 bits (145), Expect = 4e-11
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+V + A+I LA++ L + GQ C + R L+HE YD+ + + K + +GD
Sbjct: 274 IVMDDADIQLAVRSVLFAAVGTAGQRCTTCRRLLLHESIYDDVLEQLLTVYKQVKIGDPL 333
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMD 150
G +GPL + ++ +G K+L GG + G + +PT I +I+P+ D
Sbjct: 334 EKGTLLGPLHTPESKKNFEKGIEIIKSQGGKILTGGSAIESEGN-FVQPT-IVEISPDAD 391
Query: 151 CYR 153
+
Sbjct: 392 VVK 394
>gnl|CDD|143441 cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH families 4 and 17.
Delta(1)-pyrroline-5-carboxylate dehydrogenase
(EC=1.5.1.12 ), families 4 and 17: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), also known as ALDH4A1 in humans,
is a mitochondrial homodimer involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. This is a necessary step
in the pathway interconnecting the urea and
tricarboxylic acid cycles. The preferred substrate is
glutamic gamma-semialdehyde, other substrates include
succinic, glutaric and adipic semialdehydes. Also
included in this CD is the Aldh17 Drosophila
melanogaster (Q9VUC0) P5CDH and similar sequences.
Length = 522
Score = 54.9 bits (133), Expect = 2e-09
Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+V SA++D + + F GQ C +A+R + E + E + E++K + +GD
Sbjct: 292 LVHPSADVDSLVTATVRGAFEYQGQKCSAASRAYVPESLWPEVKERLLEELKEIKMGDPD 351
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKK--GAKVLLGGKPNPTIGELYY-EPTLI 142
+G +I++ ++ +D A K A+++ GGK + ++G Y+ EPT+I
Sbjct: 352 DFSNFMGAVIDEKAFDRIKGYIDHA-KSDPEAEIIAGGKCDDSVG--YFVEPTVI 403
>gnl|CDD|143450 cd07132, ALDH_F3AB, Aldehyde dehydrogenase family 3 members A1, A2,
and B1 and related proteins. NAD(P)+-dependent,
aldehyde dehydrogenase, family 3 members A1 and B1
(ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde
dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3),
and similar sequences are included in this CD. Human
ALDH3A1 is a homodimer with a critical role in cellular
defense against oxidative stress; it catalyzes the
oxidation of various cellular membrane lipid-derived
aldehydes. Corneal crystalline ALDH3A1 protects the
cornea and underlying lens against UV-induced oxidative
stress. Human ALDH3A2, a microsomal homodimer, catalyzes
the oxidation of long-chain aliphatic aldehydes to fatty
acids. Human ALDH3B1 is highly expressed in the kidney
and liver and catalyzes the oxidation of various medium-
and long-chain saturated and unsaturated aliphatic
aldehydes.
Length = 443
Score = 54.5 bits (132), Expect = 3e-09
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVV---GD 88
V +S +ID+A + KF N GQTCI+ + L + ++F+ E +K + G+
Sbjct: 215 VDKSCDIDVAARRIAWGKFINAGQTCIAPDYVLCTPEVQEKFV----EALKKTLKEFYGE 270
Query: 89 GAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPE 148
+ G +IN ++ + G KV +GG+ + E Y PT++TD+ P
Sbjct: 271 DPKESPDYGRIINDRHFQRLK-----KLLSGGKVAIGGQTDE--KERYIAPTVLTDVKPS 323
>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family.
This family describes a branch of the aldehyde
dehydrogenase (NAD) family (see pfam00171) that includes
Rv0768 from Mycobacterium tuberculosis. All members of
this family belong to species predicted to synthesize
mycofactocin, suggesting that this enzyme or another
upstream or downstream in the same pathway might be
mycofactocin-dependent. However, the taxonomic range of
this family is not nearly broad enough to make that
relationship conclusive [Unknown function, Enzymes of
unknown specificity].
Length = 480
Score = 52.1 bits (125), Expect = 2e-08
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 27 ASLNMVF-----ESANI-----DLAIQGALASKFRNC---GQTCISANRFLIHEKRYDEF 73
A+L VF +SA I DLA ++A+ F C GQ C R ++ RYDE
Sbjct: 243 ATLKKVFLELGGKSAFIVLDDADLAAACSMAA-FTVCMHAGQGCAITTRLVVPRARYDEA 301
Query: 74 ISKFSEKIKLLVVGDGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGG-KPNPTI 132
++ + + + GD A G GP+I+ Q +V +D A+ +G + GG +P
Sbjct: 302 VAAAAATMGSIKPGDPADPGTVCGPVISARQRDRVQSYLDLAVAEGGRFACGGGRPADRD 361
Query: 133 GELYYEPTLITDIT 146
+ EPT+I +
Sbjct: 362 RGFFVEPTVIAGLD 375
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 51.4 bits (124), Expect = 3e-08
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 35 SANIDLAIQGALASKFRNCGQTCISANRFLIHEKR-YDEFISKFSEKIKLLVVGDGAVSG 93
+A + A++ + S F + GQ C SA R L ++ + FI + L VGD
Sbjct: 291 TALPEQAVKDVVQSAFGSAGQRC-SALRLLYLQEEIAERFIEMLKGAMASLKVGDPWDLS 349
Query: 94 VNVGPLINKA 103
+VGPLI+K
Sbjct: 350 TDVGPLIDKP 359
>gnl|CDD|131331 TIGR02278, PaaN-DH, phenylacetic acid degradation protein paaN.
This enzyme is proposed to act in the ring-opening step
of phenylacetic acid degradation which follows ligation
of the acid with coenzyme A (by PaaF) and hydroxylation
by a multicomponent non-heme iron hydroxylase complex
(PaaGHIJK). Gene symbols have been standardized in. This
enzyme is related to aldehyde dehydrogenases and has
domains which are members of the pfam00171 and pfam01575
families. This family includes paaN genes from
Pseudomonas, Sinorhizobium, Rhodopseudomonas,
Escherichia, Deinococcus and Corynebacterium. Another
homology family (TIGR02288) includes several other
species.
Length = 663
Score = 51.4 bits (123), Expect = 4e-08
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 54 GQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAVSGVNVGPLINKAQLTKVTRIVD 113
GQ C + R ++ + + + ++ +V+GD GV++GPL++ Q V V
Sbjct: 289 GQKCTAIRRVIVPKALLEAVLKALQARLAKVVLGDPREEGVDMGPLVSLEQRADVEAAVA 348
Query: 114 DAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMD 150
+ GA+V LGG P G ++ PTL+ P
Sbjct: 349 ALLAAGAEVRLGG-PGRLDGA-FFPPTLLLAEDPWAG 383
>gnl|CDD|143414 cd07095, ALDH_SGSD_AstD, N-succinylglutamate 5-semialdehyde
dehydrogenase, AstD-like. N-succinylglutamate
5-semialdehyde dehydrogenase or succinylglutamic
semialdehyde dehydrogenase (SGSD, E. coli AstD,
EC=1.2.1.71) involved in L-arginine degradation via the
arginine succinyltransferase (AST) pathway and catalyzes
the NAD+-dependent reduction of succinylglutamate
semialdehyde into succinylglutamate.
Length = 431
Score = 50.7 bits (122), Expect = 5e-08
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRY-DEFISKFSEKIKLLVVGDGA 90
V++ A+ID A + S F GQ C A R ++ + D F+ + E K L +G
Sbjct: 215 VWDVADIDAAAYLIVQSAFLTAGQRCTCARRLIVPDGAVGDAFLERLVEAAKRLRIGAPD 274
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLL 124
+GPLI A + D + G + LL
Sbjct: 275 AEPPFMGPLIIAAAAARYLLAQQDLLALGGEPLL 308
>gnl|CDD|143446 cd07128, ALDH_MaoC-N, N-terminal domain of the monoamine oxidase C
dehydratase. The N-terminal domain of the MaoC
dehydratase, a monoamine oxidase regulatory protein.
Orthologs of MaoC include PaaZ (Escherichia coli) and
PaaN (Pseudomonas putida), which are putative
ring-opening enzymes of the aerobic phenylacetic acid
(PA) catabolic pathway. The C-terminal domain of MaoC
has sequence similarity to enoyl-CoA hydratase. Also
included in this CD is a novel Burkholderia xenovorans
LB400 ALDH of the aerobic benzoate oxidation (box)
pathway. This pathway involves first the synthesis of a
CoA thio-esterified aromatic acid, with subsequent
dihydroxylation and cleavage steps, yielding the CoA
thio-esterified aliphatic aldehyde,
3,4-dehydroadipyl-CoA semialdehyde, which is further
converted into its corresponding CoA acid by the
Burkholderia LB400 ALDH.
Length = 513
Score = 48.8 bits (117), Expect = 2e-07
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 54 GQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAVSGVNVGPLINKAQLTKVTRIVD 113
GQ C + R + E R D I ++ +VVGD + GV +GPL+++ Q V V
Sbjct: 289 GQKCTAIRRAFVPEARVDAVIEALKARLAKVVVGDPRLEGVRMGPLVSREQREDVRAAV- 347
Query: 114 DAIKKGAKVLLGGKPNPTIGEL------YYEPTL 141
+ A+V+ GG + ++ PTL
Sbjct: 348 ATLLAEAEVVFGGPDRFEVVGADAEKGAFFPPTL 381
>gnl|CDD|237016 PRK11903, PRK11903, aldehyde dehydrogenase; Provisional.
Length = 521
Score = 48.9 bits (117), Expect = 2e-07
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 54 GQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAVSGVNVGPLINKAQLTKVTRIVD 113
GQ C + R + E YD + ++ VG+ GV +GPL+++AQL V R
Sbjct: 293 GQKCTAIRRIFVPEALYDAVAEALAARLAKTTVGNPRNDGVRMGPLVSRAQLAAV-RAGL 351
Query: 114 DAIKKGAKVLLGGKPNPTIG 133
A++ A+VL G +
Sbjct: 352 AALRAQAEVLFDGGGFALVD 371
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 48.6 bits (116), Expect = 3e-07
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG--- 87
+V E A++DLA + F GQ C + L+ E D + K + K+ L VG
Sbjct: 272 IVLEDADLDLAAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVNAKVAKLTVGPPE 331
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
D ++ P+++++ + +V DA +KGA K G L + P L+ ++ P
Sbjct: 332 DDC----DITPVVSESSANFIEGLVMDAKEKGATFCQEWKRE---GNLIW-PLLLDNVRP 383
Query: 148 EM 149
+M
Sbjct: 384 DM 385
>gnl|CDD|233324 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 1. This model represents one of
two related branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. The two branches are not as closely
related to each other as some aldehyde dehydrogenases
are to this branch, and separate models are built for
this reason. The enzyme is the second of two in the
degradation of proline to glutamate [Energy metabolism,
Amino acids and amines].
Length = 532
Score = 47.1 bits (112), Expect = 1e-06
Identities = 26/114 (22%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGA 90
+V SA+++ + G + F GQ C + +R + + F + ++ + VGD
Sbjct: 291 VVHPSADVEHVVSGTIRGAFEYQGQKCSACSRLYVPHSLWPRFKGRLLAELSRVKVGDPD 350
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGA--KVLLGGKPNPTIGELYYEPTLI 142
G +G +I++ K+ + ++ A + +L GGK + ++G + EPT++
Sbjct: 351 DFGTFMGAVIDEKSFAKIVKYIEHAKSDPSALTILAGGKYDDSVG-YFVEPTVV 403
>gnl|CDD|236931 PRK11563, PRK11563, bifunctional aldehyde dehydrogenase/enoyl-CoA
hydratase; Provisional.
Length = 675
Score = 46.4 bits (111), Expect = 2e-06
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 53 CGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAVSGVNVGPLINKAQLTKVTRIV 112
GQ C + R ++ D I ++ +VVGD + GV +G L + Q V V
Sbjct: 292 AGQKCTAIRRAIVPRALVDAVIEALRARLAKVVVGDPRLEGVRMGALASLEQREDVREKV 351
Query: 113 DDAIKKGAKVLLGGKPNPT 131
A+ A+++ GG +
Sbjct: 352 -AALLAAAEIVFGGPDSFE 369
>gnl|CDD|143444 cd07126, ALDH_F12_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH family 12.
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12), family 12: a proline catabolic enzyme of
the aldehyde dehydrogenase (ALDH) protein superfamily.
P5CDH is a mitochondrial enzyme involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. The P5CDH, ALDH12A1
gene, in Arabidopsis, has been identified as an
osmotic-stress-inducible ALDH gene. This CD contains
both Viridiplantae and Alveolata P5CDH sequences.
Length = 489
Score = 39.8 bits (93), Expect = 3e-04
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 54 GQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAVSGVNVGPLI---NKAQLTKVTR 110
GQ C + + HE + +K+K L + + +GP++ + L V +
Sbjct: 279 GQKCSAQSILFAHENWVQ---AGILDKLKALA-EQRKLEDLTIGPVLTWTTERILDHVDK 334
Query: 111 IVDDAIKKGAKVLLGGKP--NPTIGELY--YEPTLI 142
++ AI GAKVL GGKP N +I +Y YEPT +
Sbjct: 335 LL--AIP-GAKVLFGGKPLTNHSIPSIYGAYEPTAV 367
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 39.0 bits (92), Expect = 6e-04
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 45 ALASKFRNCGQTCISANRFL-IHEKRYDEFISKFSEKIK----LLVVGDGAVSGVNVGPL 99
+ S FR+ GQ C SA R L + E D I E +K L VGD + +VGP+
Sbjct: 818 VVTSAFRSAGQRC-SALRVLFVQEDIADRVI----EMLKGAMAELKVGDPRLLSTDVGPV 872
Query: 100 INKAQLTKVTRIVDDAIKKGAKVL 123
I+ + + + +K+ A++L
Sbjct: 873 IDAEAKANLDAHI-ERMKREARLL 895
>gnl|CDD|143455 cd07137, ALDH_F3FHI, Plant aldehyde dehydrogenase family 3 members
F1, H1, and I1 and related proteins. Aldehyde
dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1,
ALDH3H1, and ALDH3I1), and similar plant sequences, are
in this CD. In Arabidopsis thaliana, stress-regulated
expression of ALDH3I1 was observed in leaves and
osmotic stress expression of ALDH3H1 was observed in
root tissue, whereas, ALDH3F1 expression was not stress
responsive. Functional analysis of ALDH3I1 suggest it
may be involved in a detoxification pathway in plants
that limits aldehyde accumulation and oxidative stress.
Length = 432
Score = 36.2 bits (84), Expect = 0.005
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 35 SANIDLAIQGALASKFRNC-GQTCISANRFLIHEKRYDEFISKFSEKIKLLV---VGDGA 90
+ ++ +A++ K+ GQ CI+ + L+ E F + +K + G+
Sbjct: 219 TVDLKVAVRRIAGGKWGCNNGQACIAPDYVLVEE----SFAPTLIDALKNTLEKFFGENP 274
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGE--LYYEPTLITDITPE 148
++ ++N +++R++DD K++ GG E LY EPT++ D P
Sbjct: 275 KESKDLSRIVNSHHFQRLSRLLDDP-SVADKIVHGG----ERDEKNLYIEPTILLD--PP 327
Query: 149 MD 150
+D
Sbjct: 328 LD 329
>gnl|CDD|237515 PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol
dehydrogenase; Provisional.
Length = 862
Score = 35.5 bits (83), Expect = 0.008
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 21/105 (20%)
Query: 34 ESANIDLAIQGALASK-FRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAVS 92
++A+I A+ L SK F N G C S ++ ++ YDE +F+ GA
Sbjct: 228 KTADIKRAVNDILLSKTFDN-GMICASEQAVIVDDEIYDEVKEEFASH--------GAY- 277
Query: 93 GVNVGPLINKAQLTKVTRIVDDAIKKG--AKVLLGGKPNPTIGEL 135
+NK +L K+ + + A ++ G+ I E+
Sbjct: 278 ------FLNKKELKKLEKFIFGKENGALNADIV--GQSAYKIAEM 314
>gnl|CDD|181873 PRK09457, astD, succinylglutamic semialdehyde dehydrogenase;
Reviewed.
Length = 487
Score = 35.3 bits (82), Expect = 0.009
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRY-DEFISKFSEKIKLLVVGD-G 89
+ E A+ID A+ + S F + GQ C A R L+ + D F+++ K L VG
Sbjct: 252 IDEVADIDAAVHLIIQSAFISAGQRCTCARRLLVPQGAQGDAFLARLVAVAKRLTVGRWD 311
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLL 124
A +G +I++ + + G K LL
Sbjct: 312 AEPQPFMGAVISEQAAQGLVAAQAQLLALGGKSLL 346
>gnl|CDD|132284 TIGR03240, arg_catab_astD, succinylglutamic semialdehyde
dehydrogenase. Members of this protein family are
succinylglutamic semialdehyde dehydrogenase (EC
1.2.1.71), the fourth enzyme in the arginine
succinyltransferase (AST) pathway for arginine
catabolism [Energy metabolism, Amino acids and amines].
Length = 484
Score = 34.3 bits (79), Expect = 0.020
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 31 MVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRY-DEFISKFSEKIKLLVVGD- 88
+V E A+ID A+ + S F + GQ C A R L+ + D F+++ E + L VG
Sbjct: 249 IVDEVADIDAAVHLIIQSAFISAGQRCTCARRLLVPDGAQGDAFLARLVEVAERLTVGAW 308
Query: 89 GAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLL 124
A +G +I+ ++ + G K LL
Sbjct: 309 DAEPQPFMGAVISLQAAQRLLAAQAKLLALGGKSLL 344
>gnl|CDD|165847 PLN02203, PLN02203, aldehyde dehydrogenase.
Length = 484
Score = 34.3 bits (79), Expect = 0.021
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 35 SANIDLAIQGALASKFRNC-GQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAVSG 93
S + +A+ + K+ +C GQ CI+ + L+ E+ I IK + S
Sbjct: 229 SRDTKVAVNRIVGGKWGSCAGQACIAIDYVLVEERFAPILIELLKSTIKKFFGENPRESK 288
Query: 94 VNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMD 150
++ ++NK +++ ++ D A ++ GG + +L+ EPT++ + P +D
Sbjct: 289 -SMARILNKKHFQRLSNLLKDPRVA-ASIVHGGSIDEK--KLFIEPTILLN--PPLD 339
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 32.1 bits (74), Expect = 0.11
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Query: 41 AIQGALASKFRNCGQTCISANRFL-IHEKRYDEFISKFSEKIKLLVVGDGAVSGVNVGPL 99
+ +AS F + GQ C SA R L + E D ++ + L +GD +VGP+
Sbjct: 806 VVADVIASAFDSAGQRC-SALRVLCLQEDVADRVLTMLKGAMDELRIGDPWRLSTDVGPV 864
Query: 100 INKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLI 142
I+ + ++ G V P T + PTLI
Sbjct: 865 IDAEAQANIEAHIEAMRAAGRLVHQLPLPAETEKGTFVAPTLI 907
>gnl|CDD|224030 COG1105, FruK, Fructose-1-phosphate kinase and related
fructose-6-phosphate kinase (PfkB) [Carbohydrate
transport and metabolism].
Length = 310
Score = 30.3 bits (69), Expect = 0.48
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 81 IKLLVVGDGAVSGVN-VGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYE 138
+K+L DG + +N GP I++A+L + + ++ V+L G P + Y
Sbjct: 91 VKILDEEDGEETEINFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYA 149
>gnl|CDD|218633 pfam05553, DUF761, Cotton fibre expressed protein. This family
consists of several plant proteins of unknown function.
Three of the sequences (from Gossypium hirsutum) in
this family are described as cotton fibre expressed
proteins. The remaining sequences, found in Arabidopsis
thaliana, are uncharacterized.
Length = 38
Score = 26.7 bits (60), Expect = 1.0
Identities = 7/16 (43%), Positives = 14/16 (87%)
Query: 68 KRYDEFISKFSEKIKL 83
+R +EFI++F E+++L
Sbjct: 7 RRAEEFIARFREQLRL 22
>gnl|CDD|238874 cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and
similar esterases/lipases. FeeA and FeeB are part of a
biosynthetic gene cluster and may participate in the
biosynthesis of long-chain N-acyltyrosines by providing
saturated and unsaturated fatty acids, which it turn
are loaded onto the acyl carrier protein FeeL. SGNH
hydrolases are a diverse family of lipases and
esterases. The tertiary fold of the enzyme is
substantially different from that of the alpha/beta
hydrolase family and unique among all known hydrolases;
its active site closely resembles the Ser-His-Asp(Glu)
triad found in other serine hydrolases.
Length = 191
Score = 28.0 bits (63), Expect = 2.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 81 IKLLVVGDGAVSGVNV 96
++LLV+GD +GV V
Sbjct: 3 LRLLVLGDSTAAGVGV 18
>gnl|CDD|232878 TIGR00216, ispH_lytB, (E)-4-hydroxy-3-methyl-but-2-enyl
pyrophosphate reductase (IPP and DMAPP forming). The
IspH protein (previously designated LytB) has now been
recognized as the last enzyme in the biosynthesis of
isopentenyl diphosphate (IPP) and dimethylallyl
diphosphate (DMAPP). Escherichia coli LytB protein had
been found to regulate the activity of RelA (guanosine
3',5'-bispyrophosphate synthetase I), which in turn
controls the level of a regulatory metabolite. It is
involved in penicillin tolerance and the stringent
response [Biosynthesis of cofactors, prosthetic groups,
and carriers, Other].
Length = 280
Score = 27.7 bits (62), Expect = 2.5
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 106 TKVTRIVDDAIKKGAKVLLGGKPN--PTIGEL--YYEPTLITDITPEMDCYRFPCRLV 159
TKV V K+G V+L GK N IG + ++ + +++ ++ L
Sbjct: 100 TKVHNAVKKYAKEGYHVILIGKKNHPEVIGTRGYAPDKAIVVETLEDLENFKVEDLLG 157
>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate
dehydrogenase (PutA C-terminal domain). This model
represents one of several related branches of
delta-1-pyrroline-5-carboxylate dehydrogenase. Members
of this branch are the C-terminal domain of the PutA
bifunctional proline dehydrogenase /
delta-1-pyrroline-5-carboxylate dehydrogenase [Energy
metabolism, Amino acids and amines].
Length = 500
Score = 28.0 bits (62), Expect = 2.7
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 46 LASKFRNCGQTCISANRFL-IHEKRYDEFISKFSEKIKLLVVGDGAVSGVNVGPLINKAQ 104
L S F + GQ C SA R L + E D ++ ++ L VG + +VGP+I+
Sbjct: 295 LRSAFDSAGQRC-SALRVLCVQEDVADRVLTMIQGAMQELKVGVPHLLTTDVGPVIDAEA 353
Query: 105 LTKVTRIVDDAIKKGAKV 122
+ ++ + K+
Sbjct: 354 KQNLLAHIEHMSQTQKKI 371
>gnl|CDD|236743 PRK10719, eutA, reactivating factor for ethanolamine ammonia lyase;
Provisional.
Length = 475
Score = 27.9 bits (63), Expect = 2.7
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 74 ISKFSEKIKLLVVGDGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIG 133
++ S ++++ D + G + QL +VTR + + + + ++GG +P
Sbjct: 189 VTYISPPGQMIL--DELGLAITDGRSLTGEQLQQVTRRMAELLVE----VIGGALSPLAQ 242
Query: 134 ELYYEPTLITDITPE 148
L L + PE
Sbjct: 243 ALMTTKLLPAGVPPE 257
>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine
triphosphatases (GTPases). Members of the Rho (Ras
homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1,
RhoBTB, and Rop. There are 22 human Rho family members
identified currently. These proteins are all involved
in the reorganization of the actin cytoskeleton in
response to external stimuli. They also have roles in
cell transformation by Ras in cytokinesis, in focal
adhesion formation and in the stimulation of
stress-activated kinase. These various functions are
controlled through distinct effector proteins and
mediated through a GTP-binding/GTPase cycle involving
three classes of regulating proteins: GAPs
(GTPase-activating proteins), GEFs (guanine nucleotide
exchange factors), and GDIs (guanine nucleotide
dissociation inhibitors). Most Rho proteins contain a
lipid modification site at the C-terminus, with a
typical sequence motif CaaX, where a = an aliphatic
amino acid and X = any amino acid. Lipid binding is
essential for membrane attachment, a key feature of
most Rho proteins. Since crystal structures often lack
C-terminal residues, this feature is not available for
annotation in many of the CDs in the hierarchy.
Length = 171
Score = 27.5 bits (62), Expect = 2.8
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 81 IKLLVVGDGAV 91
IK++VVGDGAV
Sbjct: 1 IKIVVVGDGAV 11
>gnl|CDD|143440 cd07122, ALDH_F20_ACDH, Coenzyme A acylating aldehyde dehydrogenase
(ACDH), ALDH family 20-like. Coenzyme A acylating
aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and
CoA-dependent acetaldehyde dehydrogenase, functions as a
single enzyme (such as the Ethanolamine utilization
protein, EutE, in Salmonella typhimurium) or as part of
a multifunctional enzyme to convert acetaldehyde into
acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase
includes the functional domains, alcohol dehydrogenase
(ADH), ACDH, and pyruvate-formate-lyase deactivase; and
the Entamoeba histolytica aldehyde-alcohol dehydrogenase
2 (ALDH20A1) includes the functional domains ADH and
ACDH and may be critical enzymes in the fermentative
pathway.
Length = 436
Score = 27.8 bits (63), Expect = 2.9
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 34 ESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSE 79
E+A+I A++ + SK + G C S ++ ++ YDE ++
Sbjct: 215 ETADIKRAVKDIILSKTFDNGTICASEQSVIVDDEIYDEVRAELKR 260
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 28.0 bits (63), Expect = 3.0
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 17/50 (34%)
Query: 100 INKAQLTKVTRIV-----------------DDAIKKGAKVLLGGKPNPTI 132
+ +L ++ R+V D+A KGA L G K +
Sbjct: 607 LTAEELKEIERLVNEIIRENLPVKTEEMDLDEAKAKGAMALFGEKYGDEV 656
>gnl|CDD|226683 COG4230, COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase
[Energy production and conversion].
Length = 769
Score = 27.7 bits (62), Expect = 3.2
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 35 SANIDLAIQGALASKFRNCGQTCISANRFL-IHEKRYDEFISKFSEKIKLLVVGDGAVSG 93
SA + + LAS F + GQ C SA R L + E D ++ + L VG+
Sbjct: 360 SALAEQVVADVLASAFDSAGQRC-SALRVLCLQEDVADRILTMLKGAMAELRVGNPDRLT 418
Query: 94 VNVGPLI 100
+VGP+I
Sbjct: 419 TDVGPVI 425
>gnl|CDD|153300 cd07616, BAR_Endophilin_B1, The Bin/Amphiphysin/Rvs (BAR) domain of
Endophilin-B1. BAR domains are dimerization, lipid
binding and curvature sensing modules found in many
different proteins with diverse functions. Endophilins
play roles in synaptic vesicle formation, virus budding,
mitochondrial morphology maintenance, receptor-mediated
endocytosis inhibition, and endosomal sorting.
Endophilins contain an N-terminal N-BAR domain (BAR
domain with an additional N-terminal amphipathic helix),
followed by a variable region containing proline
clusters, and a C-terminal SH3 domain. They are
classified into two types, A and B. Endophilin-B
proteins are cytoplasmic proteins expressed mainly in
the heart, placenta, and skeletal muscle. Endophilin-B1,
also called Bax-interacting factor 1 (Bif-1) or SH3GLB1
(SH3-domain GRB2-like endophilin B1), is localized
mainly to the Golgi apparatus. It is involved in the
regulation of many biological events including
autophagy, tumorigenesis, nerve growth factor (NGF)
trafficking, neurite outgrowth, mitochondrial outer
membrane dynamics, and cell death. Endophilin-B1 forms
homo- and heterodimers (with endophilin-B2) through its
BAR domain, which can bind and bend membranes. It
interacts with amphiphysin 1 and dynamin 1 through its
SH3 domain.
Length = 229
Score = 27.3 bits (60), Expect = 3.9
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 99 LINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYE 138
L++KA+ TK + I K +VLL PN I E YE
Sbjct: 22 LLSKAECTKHW---TEKIMKQTEVLLQPNPNARIEEFVYE 58
>gnl|CDD|215751 pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).
Length = 269
Score = 27.3 bits (61), Expect = 4.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 99 LINKAQLTKVTRIVDDAIKKGAKVLL 124
LI++ L +V +VD AI G V++
Sbjct: 56 LIDENWLNRVDEVVDYAIDNGMYVII 81
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 27.3 bits (60), Expect = 4.2
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 64 LIHEKRYDEFISKFSEKIKLLVVGDGAVSGVNVGPLINKAQLTKVTRIVDDAIK 117
L+ + ++DE I KF I+L +NV PLINKA + + D I+
Sbjct: 477 LLDQNKFDEAIEKFDTAIELEKETKPMY--MNVLPLINKA--LALFQWKQDFIE 526
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase.
Length = 298
Score = 27.2 bits (61), Expect = 5.0
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 59 SANRFLIHEKR--YDEFISKFSEKIKLLVVGDG 89
S+ RF+I+ K Y E + +K ++ VGDG
Sbjct: 26 SSKRFVIYVKAGVYKENVEVPKKKTNVMFVGDG 58
>gnl|CDD|236323 PRK08651, PRK08651, succinyl-diaminopimelate desuccinylase;
Reviewed.
Length = 394
Score = 26.9 bits (60), Expect = 5.2
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 58 ISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAVSGVNVGPLINKAQLTKVTRIVDDAIK 117
S +R LI E+ +E + + + G + P + +V A++
Sbjct: 263 FSIDRRLIPEETAEEVRDELEALLDEVAPELGIEVEFEITPFSEAFVTDPDSELV-KALR 321
Query: 118 KGAKVLLGGKPNPTI 132
+ + +LG +P TI
Sbjct: 322 EAIREVLGVEPKKTI 336
>gnl|CDD|201032 pfam00142, Fer4_NifH, 4Fe-4S iron sulfur cluster binding proteins,
NifH/frxC family.
Length = 272
Score = 26.5 bits (59), Expect = 6.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 123 LLGGKPNPTIGELYYEPTLITDITPEMDCY 152
+LGGK PTI + E L+ D+ E
Sbjct: 46 ILGGKAQPTIIDTAAEKGLVEDVELEDVVK 75
>gnl|CDD|234613 PRK00073, pgk, phosphoglycerate kinase; Provisional.
Length = 389
Score = 26.9 bits (61), Expect = 6.2
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 17/67 (25%)
Query: 75 SKFSEKIKL----------LVVGDG------AVSGVNVG-PLINKAQLTKVTRIVDDAIK 117
+K S+KI + L++G G G NVG L+ + + +++ A +
Sbjct: 194 AKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLIDTAKELLEKAKE 253
Query: 118 KGAKVLL 124
KG K+ L
Sbjct: 254 KGVKIPL 260
>gnl|CDD|99987 cd03817, GT1_UGDG_like, This family is most closely related to the
GT1 family of glycosyltransferases.
UDP-glucose-diacylglycerol glucosyltransferase (UGDG;
also known as 1,2-diacylglycerol 3-glucosyltransferase)
catalyzes the transfer of glucose from UDP-glucose to
1,2-diacylglycerol forming
3-D-glucosyl-1,2-diacylglycerol.
Length = 374
Score = 26.8 bits (60), Expect = 6.2
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 56 TCISANRFLIHEKRYDEFISKFSE------KIKLLVVGDG 89
+ R L EK D I F+ +KL++VGDG
Sbjct: 204 VLLYVGR-LAKEKNIDFLIRAFARLLKEEPDVKLVIVGDG 242
>gnl|CDD|140324 PTZ00303, PTZ00303, phosphatidylinositol kinase; Provisional.
Length = 1374
Score = 27.0 bits (59), Expect = 6.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 39 DLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKL-----LVVGDGAVSG 93
DL + + ++R + CIS R L+H D K I L L++GDG S
Sbjct: 551 DLVLCRTVNEQWREAAELCISEYRLLLHNCDADLHSVKTPVGILLQNSLFLLLGDGPTSS 610
Query: 94 VNV 96
+ V
Sbjct: 611 IPV 613
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase
inhibitor.
Length = 509
Score = 26.9 bits (59), Expect = 6.7
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 59 SANRFLIHEKR--YDEFISKFSEKIKLLVVGDGAVSGVNVGPL 99
S RF+I+ K YDE + S K L ++GDG S + G L
Sbjct: 223 SRKRFVIYIKTGVYDEIVRIGSTKPNLTLIGDGQDSTIITGNL 265
>gnl|CDD|131570 TIGR02518, EutH_ACDH, acetaldehyde dehydrogenase (acetylating).
Length = 488
Score = 26.7 bits (59), Expect = 7.4
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 35 SANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEK 80
+AN+ A++ + SK + G C S ++ E D + + ++
Sbjct: 225 TANVKKAVRDIIDSKTFDNGTICASEQSIIVEECNKDAVVEELKKQ 270
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.408
Gapped
Lambda K H
0.267 0.0847 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,368,333
Number of extensions: 749750
Number of successful extensions: 955
Number of sequences better than 10.0: 1
Number of HSP's gapped: 868
Number of HSP's successfully gapped: 138
Length of query: 167
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 77
Effective length of database: 6,945,742
Effective search space: 534822134
Effective search space used: 534822134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.7 bits)