RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7043
(167 letters)
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 192 bits (490), Expect = 7e-60
Identities = 50/122 (40%), Positives = 76/122 (62%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
VF+ A+++ A +A+KFR GQTC+ ANR +HEK D F K +E++ + VGDG
Sbjct: 265 VFDDADLEAAADNLIANKFRGGGQTCVCANRIFVHEKVADAFGQKLAERVNKMTVGDGMN 324
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
G+++GPLINK KV R + DA+ KGA ++ G +P L++ PT++ + EM C
Sbjct: 325 DGIDIGPLINKQGFDKVKRHLQDALDKGASLVAGKQPAELGDGLFFPPTVVQGVDREMCC 384
Query: 152 YR 153
Y+
Sbjct: 385 YQ 386
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 191 bits (488), Expect = 1e-59
Identities = 50/122 (40%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
VF+ A++D A++GALASKFRN GQTC+ ANR + + YD F K + + L +GDG
Sbjct: 263 VFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAMSKLHIGDGLD 322
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
+GV +GPLI++ + KV + DA++KGA+V+ GGK G +++PT++ D+
Sbjct: 323 NGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKA-HERGGNFFQPTILVDVPANAKV 381
Query: 152 YR 153
+
Sbjct: 382 SK 383
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 190 bits (486), Expect = 2e-59
Identities = 55/122 (45%), Positives = 82/122 (67%), Gaps = 1/122 (0%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
VF+ A++D A++GA+ASK+RN GQTC+ NRF +HE+ YD F K + + L VG G
Sbjct: 266 VFDDADLDAAVEGAIASKYRNNGQTCVCTNRFFVHERVYDAFADKLAAAVSKLKVGRGTE 325
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
SG +GPLIN+A + KV + DA+ KGA ++ GGK +G ++EPT++T + P+MD
Sbjct: 326 SGATLGPLINEAAVKKVESHIADALAKGASLMTGGKR-HALGHGFFEPTVLTGVKPDMDV 384
Query: 152 YR 153
+
Sbjct: 385 AK 386
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 190 bits (486), Expect = 3e-59
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V + A++D A + AL +F NCGQ C R +H YDEF++KF +K L VGD
Sbjct: 266 VMDDADLDKAAEDALWGRFANCGQVCTCVERLYVHASVYDEFMAKFLPLVKGLKVGDPMD 325
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNP---TIGELYYEPTLITDITPE 148
+ +GP N+ ++ + IV +AIK+GA V GGK G +YEPT++ D+ +
Sbjct: 326 ADSQMGPKCNQREIDNIDHIVHEAIKQGATVATGGKTATVEGFEGGCWYEPTVLVDVKQD 385
Query: 149 MDCYR 153
Sbjct: 386 NIVVH 390
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 188 bits (481), Expect = 1e-58
Identities = 52/122 (42%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
VF+ A++D A+ GA+ SK+RN GQTC+ ANR + YD+F K + K+K L VG+G
Sbjct: 286 VFDDADLDAAVDGAMVSKYRNAGQTCVCANRIYVQRGVYDKFAEKLAAKVKELKVGNGTE 345
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
GV +GP+I + +TKV ++DA+ KGAK++ GGK +G L++EP ++T +T +M
Sbjct: 346 PGVVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGKE---LGGLFFEPGILTGVTSDMLV 402
Query: 152 YR 153
+
Sbjct: 403 AK 404
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 188 bits (480), Expect = 1e-58
Identities = 57/123 (46%), Positives = 84/123 (68%), Gaps = 2/123 (1%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKI-KLLVVGDGA 90
VF+SAN+D A+ GA+ASKFRN GQTC+ +N+FL+ +D F+ F+E + K L VG+G
Sbjct: 267 VFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVKAFAEAMKKNLRVGNGF 326
Query: 91 VSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMD 150
G GPLIN+ + KV + V+DA+ KGA V+ GGK +G+ ++EPTL+ ++T +M
Sbjct: 327 EEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKR-HQLGKNFFEPTLLCNVTQDML 385
Query: 151 CYR 153
C
Sbjct: 386 CTH 388
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 184 bits (470), Expect = 4e-57
Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V + A+++LA++ + S+ N GQ C A R + + YD+F+++ E ++ + G+ A
Sbjct: 260 VMDDADLELAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQFVNRLGEAMQAVQFGNPAE 319
Query: 92 SG-VNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMD 150
+ +GPLIN A L +V + V A+++GA+V GGK YY PTL+ D+ EM
Sbjct: 320 RNDIAMGPLINAAALERVEQKVARAVEEGARVAFGGKA-VEGKGYYYPPTLLLDVRQEMS 378
Query: 151 CYR 153
Sbjct: 379 IMH 381
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 181 bits (462), Expect = 7e-56
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V A++D A+ A+ KF + GQ C+ NR ++H+ YDEF+ KF+ ++K L GD
Sbjct: 262 VLSDADVDRAVDAAIFGKFIHQGQICMIINRIIVHQDVYDEFVEKFTARVKQLPYGDQTD 321
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
VGPLIN+ Q+ K I++ A G ++ + GK P +
Sbjct: 322 PKTVVGPLINERQIEKALEIIEQAKTDGIELAVEGKRVGN----VLTPYVFVGADNNSKI 377
Query: 152 YR 153
+
Sbjct: 378 AQ 379
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 176 bits (450), Expect = 4e-54
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V + A+ + ++ N GQ C S+ R ++ + RYDE + + L GD
Sbjct: 240 VLDDADPQVLRNVLNDARTYNDGQVCTSSKRIIVEKSRYDEVLHELKNVFSNLKAGDPLE 299
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
+ + P+ ++ K+ V +AI GAKV + G ++ PT++TDI +
Sbjct: 300 ADTTLPPMNSEKAKEKLEAQVKEAIDAGAKVFYQYPEIDSKG-AFFRPTILTDIAKDNPV 358
Query: 152 YR 153
+
Sbjct: 359 FD 360
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 175 bits (447), Expect = 7e-54
Identities = 38/122 (31%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V A+++LA++ A+A +++N GQ C +A RF++ E F +F L +GD V
Sbjct: 243 VLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIVEEGIAQAFTDRFVAAAAALKMGDPLV 302
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
++GP+ ++ + V ++ +GA++LLGG+ G YY T++ D+TP+M
Sbjct: 303 EENDLGPMARFDLRDELHQQVQASVAEGARLLLGGEKIAGEG-NYYAATVLADVTPDMTA 361
Query: 152 YR 153
+R
Sbjct: 362 FR 363
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 174 bits (444), Expect = 3e-53
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
N+V + A+++ A+ + F GQ CIS L+ E D+FI F K K+L VG+
Sbjct: 248 NIVLKDADLNKAVNALIKGSFIYAGQVCISVGMILVDESIADKFIEMFVNKAKVLNVGNP 307
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
+VGPLI+ V ++V+ AI +G K+LLGGK + + PT++ ++ +
Sbjct: 308 LDEKTDVGPLISVEHAEWVEKVVEKAIDEGGKLLLGGKRDKA----LFYPTIL-EVDRDN 362
Query: 150 DCYR 153
+
Sbjct: 363 ILCK 366
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 173 bits (442), Expect = 6e-53
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V E A+++L + +A F GQ C + R L+ E DE + K EK+ L +G+
Sbjct: 259 VLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIGNP-E 317
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
++ PLI+ V +++DA KGA L K P L +T +M
Sbjct: 318 DDADITPLIDTKSADYVEGLINDANDKGATALTEIKREGN----LICPILFDKVTTDMRL 373
Query: 152 YR 153
Sbjct: 374 AW 375
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 174 bits (443), Expect = 6e-53
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 6/127 (4%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+V E A++DLA + GQ C + L Y + + + ++++ L VGD
Sbjct: 270 AIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVYGKLVEEVAKRLSSLRVGDP 329
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLI---TDIT 146
V+VGPLI+ + + ++ ++DA++KG +VL GG+ +G Y +PT + D
Sbjct: 330 RDPTVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRR---LGPTYVQPTFVEAPADRV 386
Query: 147 PEMDCYR 153
+M Y+
Sbjct: 387 KDMVLYK 393
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 173 bits (442), Expect = 8e-53
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+V + A++ L ++ F GQ C + R + + D+ ++ E ++ L VG
Sbjct: 266 AIVLDDADLKLTASQIVSGAFSYSGQRCTAIKRVFVQDSVADQLVANIKELVEQLTVGSP 325
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
++ P+I++ + ++DDA++ GA +L G K PTL+ D+TP M
Sbjct: 326 -EDDADITPVIDEKSAAFIQGLIDDALENGATLLSGNKRQGN----LLSPTLLDDVTPAM 380
Query: 150 DCYR 153
Sbjct: 381 RVAW 384
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 172 bits (439), Expect = 3e-52
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+V A+ID A Q A F + GQ C+S NR ++ +DEF+ KF E +K + GD
Sbjct: 267 FVVLADADIDAAAQAAAVGAFLHQGQICMSINRVIVDAAVHDEFLEKFVEAVKNIPTGDP 326
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
+ G VGP+IN +QL+ + ++ A K+GA V + G P + +D+T +M
Sbjct: 327 SAEGTLVGPVINDSQLSGLKEKIELAKKEGATVQVEGPIEGR----LVHPHVFSDVTSDM 382
Query: 150 DCYR 153
+ R
Sbjct: 383 EIAR 386
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 167 bits (425), Expect = 3e-50
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
FE A++ L + AL + GQ C +A R IHE +DE +++ + + VG+
Sbjct: 278 AFEDADLSLVVPSALFAAVGTAGQRCTTARRLFIHESIHDEVVNRLKKAYAQIRVGNPWD 337
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
V GPL K ++ V++A K+G V+ GGK Y EPT++T + +
Sbjct: 338 PNVLYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKV-MDRPGNYVEPTIVTGLGHDASI 396
Query: 152 YR 153
Sbjct: 397 AH 398
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 148 bits (377), Expect = 2e-43
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRY-DEFISKFSEKIKLLVVGD 88
+V E A++D A+ + S F + GQ C A R L+ + + D +++ L VG
Sbjct: 255 LVVEEVADLDAAVYTIIQSAFISAGQRCTCARRLLVPQGAWGDALLARLVAVSATLRVGR 314
Query: 89 G-AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
+G +I+ + + + + I KGA+ LL P G P ++ D++
Sbjct: 315 FDEQPAPFMGAVISLSAAEHLLKAQEHLIGKGAQPLLAMTQ-PIDGAALLTPGIL-DVSA 372
Query: 148 EMDCYR 153
+
Sbjct: 373 VAERPD 378
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 130 bits (329), Expect = 2e-36
Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S +VFE ++D A + A+ F GQ C + +R ++HE EF+++ + IK + +
Sbjct: 265 SPLVVFEDVDLDKAAEWAIFGCFWTNGQICSATSRLILHESIATEFLNRIVKWIKNIKIS 324
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGE-LYYEPTLITDIT 146
D G +GP++++ Q K+ + V +A +GA +L GG + + + EPT+ITD+T
Sbjct: 325 DPLEEGCRLGPVVSEGQYEKILKFVSNAKSEGATILTGGSRPEHLKKGFFIEPTIITDVT 384
Query: 147 PEMDCYR 153
M +R
Sbjct: 385 TNMQIWR 391
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 130 bits (329), Expect = 2e-36
Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
+ N++F+ A+ +LA+ AL + + GQ C + +R L+ D+F +++K + +G
Sbjct: 284 NPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNSIKDKFEQALIDRVKKIKLG 343
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGEL----YYEPTLIT 143
+G + +GP+I+ K+ +D A +GA + +GGK P +L ++EPT+IT
Sbjct: 344 NGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKR-PDRDDLKDGLFFEPTVIT 402
Query: 144 DITPEMDCYR 153
+ M +
Sbjct: 403 NCDTSMRIVQ 412
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 128 bits (325), Expect = 9e-36
Identities = 40/126 (31%), Positives = 61/126 (48%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
+VF A++D A G + N GQ CIS +R L+ E D + + + + + G
Sbjct: 275 GPQIVFADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEGIRDALMERLLDISRKVAFG 334
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
D +G +I++A KV V I GA++LLGG+ LYY PT+ +TP
Sbjct: 335 DPLNERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTP 394
Query: 148 EMDCYR 153
+M R
Sbjct: 395 DMSIAR 400
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 128 bits (323), Expect = 2e-35
Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S +VF+ A+I+ A+ GA+ F + GQ C + R + +K F+ + + +++G
Sbjct: 263 SPMIVFDDADIESAVGGAMLGNFYSSGQVCSNGTRVFVQKKAKARFLENLKRRTEAMILG 322
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGE--LYYEPTLITDI 145
D ++GPL++KAQ KV ++ +GA ++ GG + Y +PT+ D+
Sbjct: 323 DPLDYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADV 382
Query: 146 TPEMDCYR 153
T +M R
Sbjct: 383 TDDMTIAR 390
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 127 bits (321), Expect = 3e-35
Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S ++F+ ++ A++GAL + F GQ C + R + + +F+ + ++ K +VVG
Sbjct: 268 SPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIMPQFLEEVVKRTKAIVVG 327
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGEL-----YYEPTLI 142
D ++ +G LI+K QL KV V A K+GA+VL GG+P + P ++
Sbjct: 328 DPLLTETRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVL 387
Query: 143 TDITPEMDCYR 153
+ +M C +
Sbjct: 388 DNCRDDMTCVK 398
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 126 bits (320), Expect = 4e-35
Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S +VF A++D A++ A F + GQ CI+A+R + E YDEF+ + E+ K V+G
Sbjct: 274 SPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLG 333
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
+ GV+ GP I+K Q K+ +++ K+GAK+ GG P G + +PT+ +D+T
Sbjct: 334 NPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKG-YFIQPTVFSDVTD 392
Query: 148 EM 149
+M
Sbjct: 393 DM 394
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 126 bits (318), Expect = 7e-35
Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S ++F +++ A+Q ++S F N G+ CI+A R + E +++F+ K E+++ + +G
Sbjct: 293 SPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIG 352
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
+ N GP ++A L K+ +K+GA ++ GG P G +++PT+ TD+
Sbjct: 353 NPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPG-FFFQPTVFTDVED 411
Query: 148 EM 149
M
Sbjct: 412 HM 413
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 125 bits (317), Expect = 8e-35
Identities = 26/125 (20%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+V+ A+++ + G + N GQ C +A R Y++ ++ + + +
Sbjct: 276 VIVYGDADLEAVVNGIRTFGYYNAGQDCTAACRIYAEAGIYEKLVADLTSAVSTIRYNLD 335
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKG-AKVLLGGKPNPTIGELYYEPTLITDITPE 148
+ +GPLI++ Q +V V+ A + ++ GG+ G +++PT++ T E
Sbjct: 336 DDTENEIGPLISRRQRDRVASFVERAADQKHIEITTGGRTGSDEG-FFFQPTVVAGATQE 394
Query: 149 MDCYR 153
+ R
Sbjct: 395 DEIVR 399
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 125 bits (317), Expect = 1e-34
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S N++ A++D A++ A + F N GQ + +R + E YDEF+ + + K VVG
Sbjct: 273 SPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDIYDEFVERSVARAKSRVVG 332
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
+ S GP +++ Q K+ ++ ++GAK+L GG G + +PT+ D+
Sbjct: 333 NPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRG-YFIQPTVFGDVQD 391
Query: 148 EM 149
M
Sbjct: 392 GM 393
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 125 bits (316), Expect = 1e-34
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+VF+ A+I+ ++G + N GQ C +A R + YD + K + L G
Sbjct: 274 VIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAP 333
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKG-AKVLLGGKPNPTIGELYYEPTLITDITPE 148
+GPL + A L +V + V++A G KV+ GG+ G YY PTL+ +
Sbjct: 334 DDESTELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNG-YYYAPTLLAGALQD 392
Query: 149 MDCYR 153
+
Sbjct: 393 DAIVQ 397
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 125 bits (316), Expect = 1e-34
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S +V + +I A + N GQ C + R L+ K D F+++ E+ + VG
Sbjct: 253 SPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAGTRVLVPNKIKDAFLAELKEQFSQVRVG 312
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGE--LYYEPTLITDI 145
+ G VGP+I+K Q +V ++ I++GA++ GG P E + PT+ ++
Sbjct: 313 NPREDGTQVGPIISKKQFDQVQNYINKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINV 372
Query: 146 TPEM 149
+M
Sbjct: 373 DNQM 376
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 124 bits (313), Expect = 3e-34
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S ++F A++D A A+ + F + GQ C + R IH + F +K E+++ + +G
Sbjct: 257 SPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLG 316
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGEL---YYEPTLITD 144
D N GPL++ + V ++ + A++L GG+ Y PT+ TD
Sbjct: 317 DPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTD 376
Query: 145 ITPEMDCYR 153
+M R
Sbjct: 377 CRDDMTIVR 385
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 122 bits (309), Expect = 1e-33
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S ++ E ++ AI + S N GQ C++ R L RYDE ++ + + L VG
Sbjct: 259 SAAIILEDVDLAAAIPMMVFSGVMNAGQGCVNQTRILAPRSRYDEIVAAVTNFVTALPVG 318
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYY-EPTLITDIT 146
+ +GPLI++ Q T+V + I++GA+++ GG + ++ +PT+ D+
Sbjct: 319 PPSDPAAQIGPLISEKQRTRVEGYIAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVD 378
Query: 147 PEM 149
+M
Sbjct: 379 NKM 381
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 121 bits (305), Expect = 6e-33
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+V A++DLA + L S F GQ C + +R +IH+ YDE + K K L VGD
Sbjct: 294 VVVDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIHKDVYDEVLEKTVALAKNLTVGDP 353
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
+GP+I++ K+ ++ K+G +++ GG+ + + G + +PT+I D+ PE
Sbjct: 354 TNRDNYMGPVIDEKAFEKIMSYIEIGKKEG-RLMTGGEGDSSTG-FFIQPTIIADLDPEA 411
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 119 bits (300), Expect = 2e-32
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
N++F A+ID A+Q + F N GQ+C + R L+ + YD+ I + + VG
Sbjct: 275 GANIIFADADID-ALQRGVRHCFYNSGQSCNAPTRMLVEQAIYDKAIKTAKDIAEKTQVG 333
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGE--LYYEPTLITDI 145
G +G ++GP+++K Q K+ ++ I +GA ++ GG P E Y PT+ D+
Sbjct: 334 PGHQTGNHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADV 393
Query: 146 TPEM 149
P M
Sbjct: 394 KPHM 397
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 119 bits (301), Expect = 2e-32
Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 11/137 (8%)
Query: 28 SLNMVFESAN-----IDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIK 82
+ ++ A DL I+ + GQ C + R + E + + K+
Sbjct: 265 NSAILCADATPDTPAFDLFIKEVVREMTVKSGQKCTAIRRAFVPEAALEPVLEALKAKLA 324
Query: 83 LLVVGDGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGEL----YYE 138
+ VG+ V +G L+++ Q V + ++ +
Sbjct: 325 KITVGNPRNDAVRMGSLVSREQYENVLAGIAALREEAVLAYDSSAVPLIDADANIAACVA 384
Query: 139 PTL--ITDITPEMDCYR 153
P L + D +
Sbjct: 385 PHLFVVNDPDNATLLHD 401
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 119 bits (300), Expect = 3e-32
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+VF A+++ A+ + F G+ C +++R L+ EK +++F+ K E+ + + VG
Sbjct: 278 ALVFADADLERALDAVVFQIFSFNGERCTASSRLLVEEKIFEDFVGKVVERARAIRVGHP 337
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGEL-------YYEPTLI 142
VGPLI+ L +V V+ ++GA++L+GG+ T Y PT+
Sbjct: 338 LDPETEVGPLIHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLLPTVF 397
Query: 143 TDITPEMDCYR 153
M +
Sbjct: 398 VG-ENHMKIAQ 407
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 113 bits (284), Expect = 4e-30
Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+V E+A+ DLA +G + S + GQ C +A+R ++ + Y+ + + ++ + L VG
Sbjct: 295 IIVDETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAYEPVLERVLKRAERLSVGPA 354
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
++GP+++ Q KV ++ +G +++LGGK G + PT+ T++ P+
Sbjct: 355 E-ENPDLGPVVSAEQERKVLSYIEIGKNEG-QLVLGGKRLEGEG-YFIAPTVFTEVPPKA 411
Query: 150 D 150
Sbjct: 412 R 412
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 101 bits (253), Expect = 1e-25
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
+ + A++D A+ L S F GQ C + +R ++ + YD+FI + K VG
Sbjct: 790 IDDDADLDEAVPHVLYSAFGFQGQKCSACSRVIVLDAVYDKFIERLVSMAKATKVGPSED 849
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEMDC 151
+G + + + + + ++G + P G + T+I I PE
Sbjct: 850 PANYMGAVADDKAMKSIKEYAEIGKREGHVLYESPVPA-GEG-YFVPMTIIGGIKPEHRI 907
Query: 152 YR 153
+
Sbjct: 908 AQ 909
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 95.4 bits (238), Expect = 1e-23
Identities = 29/123 (23%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V AN++ + + + F + G+ C++ + E DEF++K EK+ + +G+G
Sbjct: 258 VLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGIADEFMAKLQEKVADIKIGNGLD 317
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYE-PTLITDITPEMD 150
GV +GP+I + + ++ +++GA+++ G+ + Y+ PT+ ++T EM
Sbjct: 318 DGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGR-ENVSDDGYFVGPTIFDNVTTEMT 376
Query: 151 CYR 153
++
Sbjct: 377 IWK 379
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 91.7 bits (228), Expect = 2e-22
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 4/118 (3%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
+A + + S FR+ GQ C + + E D I + + L +GD +
Sbjct: 769 ADATALPEQVADDVVTSAFRSAGQRCSALRLLFVQEDVADRMIEMVAGAARELKIGDPSD 828
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
+VGP+I+ ++ + + G P + P +
Sbjct: 829 VATHVGPVIDVEAKQRLDAHIARMKTEARLHFAGPAPEGC----FVAPHIFELTEAGQ 882
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 90.8 bits (226), Expect = 4e-22
Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTC--ISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+ A++D A + + + + G+ C IS + E+ + I K ++ L +G
Sbjct: 279 IMPDADLDQAANALIGAGYGSAGERCMAISVAVP-VGEETANRLIDKLVPMVESLRIGPY 337
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYE------PTLIT 143
++GP++ K ++ ++D I++GAK+++ G+ + + YE L
Sbjct: 338 TDEKADMGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGR-DFKLQG--YENGHFIGGCLFD 394
Query: 144 DITPEMDCYR 153
D+TP+MD Y+
Sbjct: 395 DVTPDMDIYK 404
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 82.3 bits (204), Expect = 3e-19
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 7/122 (5%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
++ E+A+I A+ L SK + G C S ++ ++ YDE +F+ ++
Sbjct: 217 VPVVIDETADIKRAVASVLMSKTFDNGVVCASEQAVIVVDEVYDEVKERFASHKAHVLSK 276
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
A V LI+ A K+ AI + A V + + ++
Sbjct: 277 TDA-DKVRKVLLIDGALNAKIVGQPATAIAEMAGVKVPADTK------VLIGEGLGKVSY 329
Query: 148 EM 149
+
Sbjct: 330 DD 331
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 82.0 bits (203), Expect = 4e-19
Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 8/119 (6%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
+ SANI A++ L SK + G C S ++ + I++F ++ +
Sbjct: 222 GPAFIERSANIPRAVKHILDSKTFDNGTICASEQSVVVERVNKEAVIAEFRKQGAHFLSD 281
Query: 88 DGAV--------SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYE 138
AV ++ P I + + + + A+VL+ + Y
Sbjct: 282 AEAVQLGKFILRPNGSMNPAIVGKSVQHIANLAGLTVPADARVLIAEETKVGAKIPYSR 340
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 80.1 bits (198), Expect = 2e-18
Identities = 24/142 (16%), Positives = 39/142 (27%), Gaps = 22/142 (15%)
Query: 17 QPRPKVMPREASL-----NMVFESANIDLAI---QGALASKFRNCGQTCISANRFLIHE- 67
RP+ +P L + A A QG S GQ C + ++ E
Sbjct: 275 AARPEPIPFFGELGSVNPMFLLPEALKARAETLGQGWAGSLTMGAGQFCTNPGIAVVIEG 334
Query: 68 KRYDEFISKFSEKIKLLVVGDGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGK 127
D F + E + + G+ +A+ A + K LL +
Sbjct: 335 ADADRFTTAAVEALAKVAPQTMLTDGIAKAYRDGQARF---------ATRNAVKPLLATE 385
Query: 128 PNPTIGELYYEPTLITDITPEM 149
P L +
Sbjct: 386 S----SGRDASPNLFETTGAQF 403
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 78.7 bits (195), Expect = 7e-18
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V ++ ++D+A + KF N GQTC++ + L ++ + K + +K G+ A
Sbjct: 235 VDKNCDLDVACRRIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKEF-YGEDAK 293
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
+ G +I+ +V +++ KV GG + Y PT++TD+ P+
Sbjct: 294 KSRDYGRIISARHFQRVMGLIEG-----QKVAYGGTGDA--ATRYIAPTILTDVDPQS 344
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 75.1 bits (185), Expect = 1e-16
Identities = 25/146 (17%), Positives = 41/146 (28%), Gaps = 16/146 (10%)
Query: 12 VTQKTQPRPKVMPREASL-----NMVFESANIDLA--IQGALASKFRNCGQTCISANRFL 64
+ RP+ +P L +F SA A +AS CGQ C
Sbjct: 237 LFNLAHERPEPIPFYGELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKPGVVF 296
Query: 65 IHEKRYDEFISKFSEKIKLLVVGDGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLL 124
+ F E + L+ + P I + ++V G V
Sbjct: 297 ALNTPETQ---AFIETAQSLIRQQSP--STLLTPGIRDSYQSQVVSR---GSDDGIDVTF 348
Query: 125 GGKPNPTIGE-LYYEPTLITDITPEM 149
+P + L+ + P
Sbjct: 349 SQAESPCVASALFVTSSENWRKHPAW 374
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 69.2 bits (170), Expect = 1e-14
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 34 ESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAVS- 92
SA++D + G L S F GQ C + +R + + + + + E+ + VGD A
Sbjct: 325 SSADVDSVVSGTLRSAFEYGGQKCSACSRLYVPKSLWPQIKGRLLEEHSRIKVGDPAEDF 384
Query: 93 GVNVGPLINKAQLTKVTRIVDDAIKKG-AKVLLGGKPNPTIGELYY-EPTLITDITPE 148
G +I+ ++ + ++ A +L GG+ N ++G YY EP +I P+
Sbjct: 385 GTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNESVG--YYVEPCIIESKDPQ 440
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 65.1 bits (159), Expect = 4e-13
Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
Query: 32 VFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDGAV 91
V A++D + + KF N GQT I+ + +H D + + E++K +
Sbjct: 245 VLPDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVKDALLERLVERVKTELPEIN-- 302
Query: 92 SGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
+ G L+ + Q+ ++ +++ +VL+G + + + + T++ +
Sbjct: 303 ---STGKLVTERQVQRLVSLLEAT---QGQVLVGSQADVS--KRALSATVVDGVEWND 352
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.046
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 17/55 (30%)
Query: 83 LLVVGDGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGG----KPNPTIG 133
+L G G SG +G L R D G +V++ G P+ G
Sbjct: 501 ILDFGPGGASG--LGVL--------THRNKD---GTGVRVIVAGTLDINPDDDYG 542
Score = 29.6 bits (66), Expect = 0.56
Identities = 18/137 (13%), Positives = 40/137 (29%), Gaps = 50/137 (36%)
Query: 13 TQKTQPRPKVMPREASLNMVFESANI---DLAIQG-------ALASKFRNCGQTCISANR 62
TQ TQP +M E + +S + D G ALA ++
Sbjct: 1729 TQFTQPALTLM--EKAAFEDLKSKGLIPADATFAGHSLGEYAALA---------SLA--- 1774
Query: 63 FLIHEKRYDEFISKFSEKIKLL----------------VVGDGAVSGVNVGPLINKAQLT 106
+ +S ++++ + + +N G +
Sbjct: 1775 ---------DVMS-IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 107 KVTRIVDDAIKKGAKVL 123
+ +V+ K+ ++
Sbjct: 1825 ALQYVVERVGKRTGWLV 1841
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM,
hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
Length = 464
Score = 29.7 bits (66), Expect = 0.44
Identities = 6/48 (12%), Positives = 14/48 (29%), Gaps = 6/48 (12%)
Query: 94 VNVGPLINKAQLTKVTRIVDDAIKKGAKVLL------GGKPNPTIGEL 135
++ G K + V ++ A +L G ++
Sbjct: 60 LSDGGQWTKDDIQTVRNLISLAEDNNLVAVLEVHDATGYDSIASLNRA 107
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 29.2 bits (66), Expect = 0.45
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 75 SKFSEKIKLLVVGDGAV 91
+ +K++VVGDGAV
Sbjct: 18 ENGKKALKIVVVGDGAV 34
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A
{Bacillus}
Length = 345
Score = 29.5 bits (66), Expect = 0.53
Identities = 5/48 (10%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 94 VNVGPLINKAQLTKVTRIVDDAIKKGAKVLL------GGKPNPTIGEL 135
++ G K + V +++ A + ++ G +
Sbjct: 75 LSDGGQWEKDDIDTVREVIELAEQNKMVAVVEVHDATGRDSRSDLDRA 122
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN
BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Length = 294
Score = 29.4 bits (66), Expect = 0.54
Identities = 4/48 (8%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 94 VNVGPLINKAQLTKVTRIVDDAIKKGAKVLL------GGKPNPTIGEL 135
++ G K + + +++ A + ++ G +
Sbjct: 52 LSDGGQWEKDDIDTIREVIELAEQNKMVAVVEVHDATGRDSRSDLNRA 99
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose
binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A
3pzv_A
Length = 327
Score = 28.7 bits (64), Expect = 0.85
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 97 GPLINKAQLTKVTRIVDDAIKKGAKVLL------GGKPNPTI 132
G + N + KV V+ A + G V++ G PN
Sbjct: 96 GYIDNPSVKNKVKEAVEAAKELGIYVIIDWHILNDGNPNQNK 137
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET:
GDP; 1.78A {Arabidopsis thaliana}
Length = 212
Score = 28.1 bits (63), Expect = 1.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 78 SEKIKLLVVGDGAV 91
S+ IK + VGDGAV
Sbjct: 7 SKFIKCVTVGDGAV 20
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 27.7 bits (62), Expect = 1.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 78 SEKIKLLVVGDGAV 91
S IK + VGDGAV
Sbjct: 6 SRFIKCVTVGDGAV 19
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding,
methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A
{Homo sapiens}
Length = 214
Score = 27.4 bits (61), Expect = 1.9
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 79 EKIKLLVVGDGAV 91
+K+++VGDG
Sbjct: 33 RSVKVVLVGDGGC 45
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 27.4 bits (61), Expect = 2.1
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 80 KIKLLVVGDGAV 91
K K++VVGD
Sbjct: 7 KCKIVVVGDSQC 18
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus}
SCOP: c.37.1.8
Length = 205
Score = 27.4 bits (61), Expect = 2.2
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 80 KIKLLVVGDGAV 91
K K++VVGD
Sbjct: 28 KCKIVVVGDSQC 39
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 27.0 bits (60), Expect = 2.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 80 KIKLLVVGDGAV 91
+ KL+VVGDGA
Sbjct: 25 RKKLVVVGDGAC 36
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP:
c.37.1.8
Length = 194
Score = 26.7 bits (59), Expect = 2.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 78 SEKIKLLVVGDGAV 91
+ +K +VVGDGAV
Sbjct: 16 ALMLKCVVVGDGAV 29
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Length = 394
Score = 27.3 bits (61), Expect = 3.1
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 64 LIHEKRYDEFISKFSE-----KIKLLVVGDG 89
KR + + F++ KLL+VGDG
Sbjct: 220 FRKVKRVQDVVQAFAKIVTEVDAKLLLVGDG 250
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 26.8 bits (59), Expect = 3.2
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 79 EKIKLLVVGDGAV 91
+ KL++VGD
Sbjct: 26 ARCKLVLVGDVQC 38
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C
...
Length = 186
Score = 26.6 bits (59), Expect = 3.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 78 SEKIKLLVVGDGAV 91
+ IK +VVGDGAV
Sbjct: 3 PQAIKCVVVGDGAV 16
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5,
thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP:
c.1.8.3 PDB: 2man_A* 3man_A*
Length = 302
Score = 27.0 bits (60), Expect = 3.4
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 94 VNVGPLINKAQLTKVTRIVDDAIKKGAKVLL 124
++ G +K + V ++ + +L
Sbjct: 53 LSNGVRWSKNGPSDVANVISLCKQNRLICML 83
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 26.6 bits (59), Expect = 3.5
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 66 HEKRYDEFISKFSE----KIKLLVVGDGAV 91
H + + S + KL++VGDGA
Sbjct: 7 HHHHSSGLVPRGSHMAAIRKKLVIVGDGAC 36
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold,
GTPase, GTP binding, protein binding, signali protein;
HET: GNP; 2.30A {Homo sapiens}
Length = 204
Score = 26.7 bits (59), Expect = 3.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 74 ISKFSEKIKLLVVGDGAV 91
+ + IK +VVGDGAV
Sbjct: 24 LYFQGQAIKCVVVGDGAV 41
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 26.2 bits (58), Expect = 4.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 78 SEKIKLLVVGDGAV 91
+K ++VGDGAV
Sbjct: 18 GRGVKCVLVGDGAV 31
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis,
glycoside hydrolase FA; 1.80A {Streptomyces coelicolor}
PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Length = 695
Score = 26.8 bits (59), Expect = 4.8
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 142 ITDITPEMDCYRFP 155
+ D+ P + R P
Sbjct: 43 VLDVRPVVQRGRRP 56
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase
(EC 2.7.1.56), struct genomics, joint center for
structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga
maritima} SCOP: c.72.1.1
Length = 331
Score = 26.4 bits (59), Expect = 5.0
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 81 IKLLVVGDGAVSGVN-VGPLINKAQLTKVTRIVDDAIKKGAKVLLGG 126
I+++ + ++ +N GP + + R + K V++ G
Sbjct: 108 IEIIDEKNKTITAINFPGPDVTDMDVNHFLRRYKMTLSKVDCVVISG 154
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ);
rossmann fold, glycosyltransferase, transferase; 1.50A
{Helicobacter pylori}
Length = 166
Score = 26.0 bits (58), Expect = 5.2
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 64 LIHEKRYDEFI-----SKFSEKIKLLVVGDG 89
+EK I SK+ + I LL+ G G
Sbjct: 11 YSNEKNQSVLIKAVALSKYKQDIVLLLKGKG 41
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Length = 416
Score = 26.2 bits (58), Expect = 5.5
Identities = 16/79 (20%), Positives = 23/79 (29%), Gaps = 11/79 (13%)
Query: 64 LIHEKRYDEFI---SKFSEKI---KLLVVGDGAVSGVNVGPLINKAQLTKVTRIVDDAIK 117
K + I K EKI +LL+VG A P + +I +D
Sbjct: 240 FDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHD----DPEGWIYFEKTLRKIGEDY-D 294
Query: 118 KGAKVLLGGKPNPTIGELY 136
L G +
Sbjct: 295 VKVLTNLIGVHAREVNAFQ 313
>3bma_A D-alanyl-lipoteichoic acid synthetase; structural genomics,
D-alanyl-lipoteichoic acid biosynthesis structure
initiative, PSI-2; 2.24A {Streptococcus pneumoniae}
Length = 407
Score = 26.1 bits (57), Expect = 7.4
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 14/79 (17%)
Query: 4 FGLKNSFPVTQKTQPRPKVMPREASLNMVFESANIDLAIQGALASKFRNCGQTCISANRF 63
F ++ + K++P + S + + D + S N
Sbjct: 197 FSVRGYVNYDKHVAKYLKILPDQFSYQAIEDVVKAD--------------AEKNTSNNEM 242
Query: 64 LIHEKRYDEFISKFSEKIK 82
+ Y+E I K +K+K
Sbjct: 243 GMENYFYNEQIKKDLKKLK 261
>2okv_A Probable D-tyrosyl-tRNA(Tyr) deacylase 1; DNA replication, DUE,
ATPase, tRNA deacylase, hydrolase; 2.00A {Homo sapiens}
Length = 209
Score = 25.7 bits (57), Expect = 7.9
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 15/58 (25%)
Query: 70 YDEFISKFSEKIKLLVVGDG------AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAK 121
Y+ F+ + + + ++ DG V N GP VT ++ A
Sbjct: 106 YNSFLEQLRKTYRPELIKDGKFGAYMQVHIQNDGP---------VTIELESPAPGTAT 154
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural
genomics, PSI, protein structure initiative; HET: COA;
1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Length = 138
Score = 24.9 bits (55), Expect = 9.5
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 108 VTRIVDDAIKKGAKVL 123
++ +A++ G K L
Sbjct: 82 GLQVAKEAVEAGFKKL 97
>3ko5_A D-tyrosyl-tRNA(Tyr) deacylase; DTD, ADP, hydrolase; HET: ADP; 2.09A
{Plasmodium falciparum} PDB: 3knp_A 3knf_A* 3ko3_A*
3ko4_A* 3ko7_A* 3ko9_A* 3kob_A* 3koc_A* 3kod_A 3lmt_A
3lmu_A 3lmv_A*
Length = 164
Score = 25.2 bits (56), Expect = 9.5
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 15/50 (30%)
Query: 70 YDEFISKFSEKIKLLVVGDG------AVSGVNVGPLINKAQLTKVTRIVD 113
Y++ I +F ++ + G + N GP VT +D
Sbjct: 116 YNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGP---------VTIYID 156
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.408
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,493,712
Number of extensions: 140526
Number of successful extensions: 548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 501
Number of HSP's successfully gapped: 80
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)