RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7043
(167 letters)
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 100 bits (249), Expect = 7e-26
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S N++ A++D A++ A + F N GQ + +R + E YDEF+ + + K VVG
Sbjct: 267 SPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDIYDEFVERSVARAKSRVVG 326
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
+ S GP +++ Q K+ ++ ++GAK+L GG G + +PT+ D+
Sbjct: 327 NPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRG-YFIQPTVFGDVQD 385
Query: 148 EMDCYR 153
M +
Sbjct: 386 GMTIAK 391
>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Sheep (Ovis aries) [TaxId: 9940]}
Length = 494
Score = 97.8 bits (243), Expect = 5e-25
Identities = 44/126 (34%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S +VF A++D A++ A F + GQ CI+A+R + E YDEF+ + E+ K V+G
Sbjct: 267 SPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLG 326
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
+ GV+ GP I+K Q K+ +++ K+GAK+ GG P G + +PT+ +D+T
Sbjct: 327 NPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKG-YFIQPTVFSDVTD 385
Query: 148 EMDCYR 153
+M +
Sbjct: 386 DMRIAK 391
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Baltic cod (Gadus callarias) [TaxId: 8053]}
Length = 503
Score = 95.2 bits (236), Expect = 4e-24
Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S ++F+ ++ A++GAL + F GQ C + R + + +F+ + ++ K +VVG
Sbjct: 268 SPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIMPQFLEEVVKRTKAIVVG 327
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGE-----LYYEPTLI 142
D ++ +G LI+K QL KV V A K+GA+VL GG+P + P ++
Sbjct: 328 DPLLTETRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVL 387
Query: 143 TDITPEMDCYR 153
+ +M C +
Sbjct: 388 DNCRDDMTCVK 398
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 516
Score = 78.4 bits (192), Expect = 3e-18
Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+V E+A+ DLA +G + S + GQ C +A+R ++ + Y+ + + ++ + L VG
Sbjct: 295 IIVDETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAYEPVLERVLKRAERLSVGPA 354
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
++GP+++ Q KV ++ +G VL G + + PT+ T++ P+
Sbjct: 355 E-ENPDLGPVVSAEQERKVLSYIEIGKNEGQLVLGGKRLEGE--GYFIAPTVFTEVPPKA 411
Query: 150 DCYR 153
+
Sbjct: 412 RIAQ 415
>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating
glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon
Thermoproteus tenax [TaxId: 2271]}
Length = 499
Score = 74.6 bits (182), Expect = 7e-17
Identities = 32/128 (25%), Positives = 58/128 (45%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+V E A++DLA + GQ C + L Y + + + ++++ L VGD
Sbjct: 268 AIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVYGKLVEEVAKRLSSLRVGDP 327
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
V+VGPLI+ + + ++ ++DA++KG +VL GG+ D +M
Sbjct: 328 RDPTVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRRLGPTYVQPTLVEAPADRVKDM 387
Query: 150 DCYRFPCR 157
Y+
Sbjct: 388 VLYKREVF 395
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 446
Score = 58.4 bits (140), Expect = 3e-11
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
S V + ++D+A + KF N GQTC++ + L ++ + K + +K G
Sbjct: 213 SPCYVDKDCDLDVACRRIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKDF-YG 271
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
+ A + G +IN +V ++D+ Y PT++ D+ P
Sbjct: 272 EDAKQSRDYGRIINDRHFQRVKGLIDNQKVAHGGTWDQSSR-------YIAPTILVDVDP 324
Query: 148 EMDCYR 153
+ +
Sbjct: 325 QSPVMQ 330
>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Streptococcus mutans [TaxId: 1309]}
Length = 474
Score = 54.9 bits (131), Expect = 5e-10
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 5/130 (3%)
Query: 28 SLNMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVG 87
+V E A+++L + +A F GQ C + R L+ E DE + K EK+ L +G
Sbjct: 254 DSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIG 313
Query: 88 DGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITP 147
+ ++ PLI+ V +++DA KGA L K P L +T
Sbjct: 314 NP-EDDADITPLIDTKSADYVEGLINDANDKGATALTEIKREGN----LICPILFDKVTT 368
Query: 148 EMDCYRFPCR 157
+M
Sbjct: 369 DMRLAWEEPF 378
>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW
{Escherichia coli [TaxId: 562]}
Length = 474
Score = 53.3 bits (127), Expect = 2e-09
Identities = 31/128 (24%), Positives = 53/128 (41%)
Query: 30 NMVFESANIDLAIQGALASKFRNCGQTCISANRFLIHEKRYDEFISKFSEKIKLLVVGDG 89
+VF+ A+I+ ++G + N GQ C +A R + YD + K + L G
Sbjct: 253 VIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAP 312
Query: 90 AVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKVLLGGKPNPTIGELYYEPTLITDITPEM 149
+GPL + A L +V + V++A G ++ G YY PTL+ +
Sbjct: 313 DDESTELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDD 372
Query: 150 DCYRFPCR 157
+
Sbjct: 373 AIVQKEVF 380
>d1js1x1 c.78.1.1 (X:1-163) Transcarbamylase-like protein
{Bacteroides fragilis [TaxId: 817]}
Length = 163
Score = 27.4 bits (60), Expect = 0.71
Identities = 8/71 (11%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 99 LINKAQLTKVTRIVDDA--IKKGAKV---LLGGKPNPTIGELYYEPTLITDITPEMDCYR 153
+ + + ++ IKK L K T+ +++ +L T ++ +
Sbjct: 4 FTCVQDIGDLKSALAESFEIKKDRFKYVELGRNK---TLLMIFFNSSLRTRLSTQKAALN 60
Query: 154 FPCRLVDTIPT 164
++
Sbjct: 61 LGMNVIVLDIN 71
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.5 bits (57), Expect = 1.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 78 SEKIKLLVVGDGAV 91
EK +L+VVG G V
Sbjct: 3 QEKYRLVVVGGGGV 16
>d2zdpa1 d.58.4.5 (A:0-108) Hypothetical protein PG130 (SAV0165)
{Staphylococcus aureus [TaxId: 1280]}
Length = 109
Score = 24.6 bits (53), Expect = 3.6
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 58 ISANRFLIHEKRYDEFISKFSEKIKL 83
++ NR + + +E I +F + +
Sbjct: 4 MAENRLQLQKGSAEETIERFYNRQGI 29
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 24.6 bits (52), Expect = 5.7
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 80 KIKLLVVGDGAV 91
K K++VVGD
Sbjct: 2 KCKIVVVGDSQC 13
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 24.2 bits (51), Expect = 7.0
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 80 KIKLLVVGDGAVSGVNVGPLINKAQLTKVTRIVDDAIKKGAKV 122
K+++ VVG G ++ P++ A + K +
Sbjct: 1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPI 43
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 24.2 bits (51), Expect = 7.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 78 SEKIKLLVVGDGAV 91
SE KL+VVG G V
Sbjct: 4 SETHKLVVVGGGGV 17
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 24.2 bits (51), Expect = 8.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 79 EKIKLLVVGDGAV 91
+ IK +VVGDGAV
Sbjct: 2 QTIKCVVVGDGAV 14
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 24.2 bits (51), Expect = 9.2
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 81 IKLLVVGDGAV 91
+KL + G V
Sbjct: 3 VKLAIFGRAGV 13
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 23.8 bits (50), Expect = 9.6
Identities = 4/12 (33%), Positives = 9/12 (75%)
Query: 80 KIKLLVVGDGAV 91
++K+ ++GD V
Sbjct: 4 ELKVCLLGDTGV 15
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.408
Gapped
Lambda K H
0.267 0.0560 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 603,805
Number of extensions: 26273
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 18
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)