BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7044
(68 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 27 KLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
KL+I + + NSG Y +KA N SG+ + E+ V
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLV 97
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 32.3 bits (72), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 27 KLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
KL+I + + NSG Y +KA N SG+ + E+ V
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLV 97
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
++R GN ++ V L+++ + + ++G Y A N +GKD ++ V
Sbjct: 45 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 95
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
++R GN ++ V L+++ + + ++G Y A N +GKD ++ V
Sbjct: 45 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 95
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
++R GN ++ V L+++ + + ++G Y A N +GKD ++ V
Sbjct: 237 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 287
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 8 RSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
R Q++ ++++ N +KL+I+ +++ G Y + EN G +A V +TV+
Sbjct: 45 RKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62
NT+L++ +I+ + G Y +A N +G+DE + V +
Sbjct: 151 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 12 RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ +G I N T L I+D+ +++ G+Y + N G D A V I +
Sbjct: 49 QEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 12 RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ +G I N T L I+D+ +++ G+Y + N G D A V I +
Sbjct: 51 QEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 99
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62
NT+L++ +I+ + G Y +A N +G+DE + V +
Sbjct: 247 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 284
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62
NT+L++ +I+ + G Y +A N +G+DE + V +
Sbjct: 57 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 94
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 18 EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
++ Y + I + + G Y + EN+ GK EA+ +T+
Sbjct: 56 QVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 98
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 18 EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
++ Y + I + + G Y + EN+ GK EA+ +T+
Sbjct: 62 QVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
L I +I ++ G+Y +AEN GKD+ I V
Sbjct: 167 LKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
>pdb|2YRZ|A Chain A, Solution Structure Of The Fibronectin Type Iii Domain Of
Human Integrin Beta-4
Length = 118
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIV--DILRKNSGVYRIKAENASG 50
Q+ + G + +N+P + S+V D+L +S V+R++A++ G
Sbjct: 55 QLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEG 97
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 11 VRSEGNVEIVNVPYNTKLSIV---DILRKNSGVYRIKAENASGKDEADVEITVLILKE 65
VR N E + Y ++I+ DI + + G YR K N G+D + E+ V ++E
Sbjct: 40 VRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97
>pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, Minimized Average Structure
pdb|1WIU|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, 30 Structures
Length = 93
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 35 RKNSGVYRIKAENASGKDEADVEITV 60
R +SG Y++K +N G+DEA E+ V
Sbjct: 67 RADSGNYKLKVKNELGEDEAIFEVIV 92
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 26 TKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ L I+ +++ + G Y+ AEN +G ++ ++ V
Sbjct: 365 SNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,836,256
Number of Sequences: 62578
Number of extensions: 57087
Number of successful extensions: 210
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 31
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)