Query psy7044
Match_columns 68
No_of_seqs 117 out of 1021
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 16:41:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05762 Ig8_MLCK Eighth immuno 99.9 6.9E-22 1.5E-26 102.6 10.2 67 1-67 31-97 (98)
2 cd05748 Ig_Titin_like Immunogl 99.8 1E-18 2.2E-23 86.2 9.2 60 1-60 15-74 (74)
3 cd05853 Ig6_Contactin-4 Sixth 99.8 1.5E-18 3.3E-23 88.2 7.4 63 2-64 19-85 (85)
4 cd05894 Ig_C5_MyBP-C C5 immuno 99.8 7.4E-18 1.6E-22 85.6 9.1 60 1-60 26-86 (86)
5 cd05735 Ig8_DSCAM Eight immuno 99.8 1.2E-17 2.6E-22 85.2 9.7 66 1-66 17-87 (88)
6 cd05854 Ig6_Contactin-2 Sixth 99.8 1E-17 2.2E-22 85.0 9.3 63 2-64 19-85 (85)
7 cd05892 Ig_Myotilin_C C-termin 99.8 8.4E-18 1.8E-22 83.7 8.2 60 1-60 14-75 (75)
8 cd04971 Ig_TrKABC_d5 Fifth dom 99.7 3.7E-17 8E-22 82.4 8.9 59 1-59 14-79 (81)
9 cd05737 Ig_Myomesin_like_C C-t 99.7 4.4E-17 9.5E-22 83.4 8.6 60 1-60 32-92 (92)
10 cd05744 Ig_Myotilin_C_like Imm 99.7 8.4E-17 1.8E-21 79.9 9.1 60 1-60 14-75 (75)
11 cd04970 Ig6_Contactin_like Six 99.7 4.8E-17 1E-21 82.1 8.3 63 2-64 19-85 (85)
12 cd05855 Ig_TrkB_d5 Fifth domai 99.7 4.7E-17 1E-21 81.8 8.1 59 1-59 14-77 (79)
13 cd05893 Ig_Palladin_C C-termin 99.7 5.6E-17 1.2E-21 80.6 8.2 60 1-60 14-75 (75)
14 cd04975 Ig4_SCFR_like Fourth i 99.7 6E-17 1.3E-21 84.6 8.5 61 1-61 35-100 (101)
15 PF07679 I-set: Immunoglobulin 99.7 1.1E-16 2.4E-21 81.0 9.0 59 2-60 32-90 (90)
16 cd05859 Ig4_PDGFR-alpha Fourth 99.7 1.1E-16 2.5E-21 83.5 7.7 61 1-61 34-100 (101)
17 cd05852 Ig5_Contactin-1 Fifth 99.7 1.1E-16 2.3E-21 79.2 7.3 57 1-60 17-73 (73)
18 cd05736 Ig2_Follistatin_like S 99.7 2.4E-16 5.1E-21 78.0 8.5 61 2-62 15-75 (76)
19 cd05747 Ig5_Titin_like M5, fif 99.7 4E-16 8.8E-21 79.8 8.9 58 2-59 35-92 (92)
20 cd05723 Ig4_Neogenin Fourth im 99.7 3.6E-16 7.9E-21 76.7 8.2 57 1-60 15-71 (71)
21 cd05773 Ig8_hNephrin_like Eigh 99.7 9.9E-16 2.1E-20 80.8 9.4 65 1-65 39-109 (109)
22 cd05863 Ig2_VEGFR-3 Second imm 99.7 3E-16 6.5E-21 76.7 6.7 53 1-61 14-66 (67)
23 cd05730 Ig3_NCAM-1_like Third 99.7 1.3E-15 2.7E-20 78.2 8.8 60 2-63 35-95 (95)
24 cd05745 Ig3_Peroxidasin Third 99.7 6.5E-16 1.4E-20 76.3 7.0 56 2-60 19-74 (74)
25 cd05865 Ig1_NCAM-1 First immun 99.7 7.9E-16 1.7E-20 79.7 7.6 61 1-61 32-96 (96)
26 cd05750 Ig_Pro_neuregulin Immu 99.7 9.6E-16 2.1E-20 75.3 7.4 56 2-57 16-74 (75)
27 cd05746 Ig4_Peroxidasin Fourth 99.7 9.1E-16 2E-20 74.9 7.2 55 2-59 15-69 (69)
28 cd04969 Ig5_Contactin_like Fif 99.7 8.3E-16 1.8E-20 75.6 7.0 57 1-60 17-73 (73)
29 cd04976 Ig2_VEGFR Second immun 99.7 9.9E-16 2.2E-20 75.3 7.3 57 1-61 14-70 (71)
30 cd05864 Ig2_VEGFR-2 Second imm 99.7 7.1E-16 1.5E-20 75.8 6.6 55 1-60 14-68 (70)
31 cd05857 Ig2_FGFR Second immuno 99.7 2.9E-15 6.4E-20 75.3 8.9 59 2-60 26-85 (85)
32 cd04972 Ig_TrkABC_d4 Fourth do 99.7 3.5E-15 7.7E-20 76.0 9.0 60 1-60 31-90 (90)
33 cd05743 Ig_Perlecan_D2_like Im 99.7 2.7E-15 5.9E-20 74.7 8.3 58 2-59 18-75 (78)
34 cd05760 Ig2_PTK7 Second immuno 99.7 2.9E-15 6.2E-20 74.6 8.4 60 1-62 14-76 (77)
35 cd05866 Ig1_NCAM-2 First immun 99.6 3.3E-15 7.1E-20 76.9 8.6 59 2-60 31-91 (92)
36 cd05891 Ig_M-protein_C C-termi 99.6 2.9E-15 6.3E-20 76.8 8.4 59 2-60 33-92 (92)
37 cd04978 Ig4_L1-NrCAM_like Four 99.6 2E-15 4.3E-20 74.4 7.5 59 2-61 18-76 (76)
38 cd05868 Ig4_NrCAM Fourth immun 99.6 2.5E-15 5.4E-20 74.7 7.7 60 1-61 17-76 (76)
39 cd05895 Ig_Pro_neuregulin-1 Im 99.6 3.1E-15 6.7E-20 74.0 8.0 57 2-58 16-76 (76)
40 cd05867 Ig4_L1-CAM_like Fourth 99.6 4E-15 8.7E-20 73.7 8.1 58 2-61 18-76 (76)
41 cd04973 Ig1_FGFR First immunog 99.6 2E-15 4.3E-20 75.4 6.5 55 2-60 25-79 (79)
42 cd05763 Ig_1 Subgroup of the i 99.6 3.9E-15 8.5E-20 73.5 6.7 59 1-61 14-75 (75)
43 cd05869 Ig5_NCAM-1 Fifth immun 99.6 8.2E-15 1.8E-19 75.6 8.2 59 2-60 34-97 (97)
44 cd05876 Ig3_L1-CAM Third immun 99.6 5.5E-15 1.2E-19 72.5 6.9 57 1-60 14-70 (71)
45 cd05728 Ig4_Contactin-2-like F 99.6 5.6E-15 1.2E-19 74.7 7.0 55 2-60 31-85 (85)
46 cd05725 Ig3_Robo Third immunog 99.6 6.4E-15 1.4E-19 71.7 6.9 55 2-60 15-69 (69)
47 cd05732 Ig5_NCAM-1_like Fifth 99.6 1.2E-14 2.6E-19 74.5 7.8 60 1-60 32-96 (96)
48 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 2E-14 4.3E-19 71.0 7.4 56 2-60 15-73 (74)
49 cd05851 Ig3_Contactin-1 Third 99.6 1.1E-14 2.3E-19 74.2 6.3 56 1-60 32-87 (88)
50 cd05731 Ig3_L1-CAM_like Third 99.6 2.5E-14 5.5E-19 69.6 7.1 57 1-60 14-70 (71)
51 cd05726 Ig4_Robo Fhird immunog 99.6 3.9E-14 8.4E-19 72.1 7.2 60 2-64 18-85 (90)
52 cd05870 Ig5_NCAM-2 Fifth immun 99.6 7.1E-14 1.5E-18 72.2 8.1 60 1-60 32-98 (98)
53 cd05856 Ig2_FGFRL1-like Second 99.6 4.2E-14 9.2E-19 70.3 6.9 58 1-60 25-82 (82)
54 cd05740 Ig_CEACAM_D4 Fourth im 99.6 7.1E-14 1.5E-18 71.6 7.9 56 2-60 34-90 (91)
55 cd05756 Ig1_IL1R_like First im 99.5 3.8E-14 8.3E-19 73.1 6.0 57 2-60 36-94 (94)
56 cd05764 Ig_2 Subgroup of the i 99.5 1.2E-13 2.6E-18 67.9 7.2 56 2-60 18-74 (74)
57 cd05757 Ig2_IL1R_like Second i 99.5 1.8E-13 3.9E-18 70.4 8.1 56 1-60 31-86 (92)
58 cd04977 Ig1_NCAM-1_like First 99.5 1.8E-13 3.9E-18 70.1 8.1 60 1-60 30-92 (92)
59 cd04968 Ig3_Contactin_like Thi 99.5 8.2E-14 1.8E-18 70.6 6.6 57 1-61 32-88 (88)
60 cd05858 Ig3_FGFR-2 Third immun 99.5 1.3E-13 2.8E-18 70.2 6.9 37 25-61 54-90 (90)
61 cd05724 Ig2_Robo Second immuno 99.5 1.5E-13 3.2E-18 69.0 6.7 56 2-60 29-86 (86)
62 cd05733 Ig6_L1-CAM_like Sixth 99.5 2.2E-13 4.7E-18 67.7 6.8 54 1-54 14-71 (77)
63 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 3.5E-13 7.5E-18 65.9 7.1 53 1-59 17-69 (69)
64 cd05758 Ig5_KIRREL3-like Fifth 99.5 8.1E-13 1.8E-17 68.2 8.7 57 2-58 34-97 (98)
65 cd05765 Ig_3 Subgroup of the i 99.5 4.9E-13 1.1E-17 66.5 7.3 36 25-60 46-81 (81)
66 cd04974 Ig3_FGFR Third immunog 99.5 3E-13 6.5E-18 69.0 6.4 37 25-61 54-90 (90)
67 cd07702 Ig2_VEGFR-1 Second imm 99.5 7.4E-13 1.6E-17 65.4 6.8 53 1-57 14-67 (72)
68 cd05742 Ig1_VEGFR_like First i 99.4 6.2E-13 1.4E-17 66.9 6.3 59 2-60 20-83 (84)
69 cd05874 Ig6_NrCAM Sixth immuno 99.4 1.6E-12 3.4E-17 64.8 7.7 55 1-55 14-72 (77)
70 cd05848 Ig1_Contactin-5 First 99.4 2.5E-12 5.4E-17 66.1 8.0 56 1-58 35-92 (94)
71 cd05875 Ig6_hNeurofascin_like 99.4 2.7E-12 5.9E-17 63.9 7.8 53 1-55 14-72 (77)
72 cd05729 Ig2_FGFR_like Second i 99.4 5.1E-12 1.1E-16 62.9 8.5 59 2-60 26-85 (85)
73 cd07693 Ig1_Robo First immunog 99.4 4.3E-12 9.4E-17 64.8 8.1 59 2-60 33-99 (100)
74 KOG3513|consensus 99.4 2.2E-12 4.7E-17 87.0 8.2 63 1-67 362-428 (1051)
75 cd05850 Ig1_Contactin-2 First 99.4 1.3E-11 2.8E-16 63.4 8.9 55 2-58 36-92 (94)
76 KOG3513|consensus 99.4 1.2E-12 2.6E-17 88.2 6.4 62 2-66 458-519 (1051)
77 cd05897 Ig2_IL1R2_like Second 99.4 3.7E-12 8E-17 65.9 6.2 52 1-53 31-82 (95)
78 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 1E-11 2.2E-16 62.7 7.2 61 2-62 18-84 (84)
79 cd05722 Ig1_Neogenin First imm 99.3 9.8E-12 2.1E-16 63.7 7.2 57 1-60 30-95 (95)
80 cd05898 Ig5_KIRREL3 Fifth immu 99.3 2E-11 4.3E-16 63.5 7.9 57 2-58 34-97 (98)
81 cd05849 Ig1_Contactin-1 First 99.3 2.6E-11 5.6E-16 62.3 8.3 54 1-58 35-91 (93)
82 cd05862 Ig1_VEGFR First immuno 99.3 1.1E-11 2.4E-16 62.8 6.1 61 2-62 20-86 (86)
83 cd05873 Ig_Sema4D_like Immunog 99.3 2E-11 4.4E-16 62.2 6.7 53 2-58 27-83 (87)
84 cd04979 Ig_Semaphorin_C Immuno 99.3 1.3E-11 2.7E-16 62.6 5.8 60 1-62 26-88 (89)
85 cd05734 Ig7_DSCAM Seventh immu 99.3 2.8E-11 6.1E-16 60.1 6.7 57 1-60 14-79 (79)
86 cd04967 Ig1_Contactin First Ig 99.3 3.8E-11 8.3E-16 61.1 7.3 51 2-54 36-87 (91)
87 smart00409 IG Immunoglobulin. 99.3 1.8E-10 4E-15 56.2 9.1 59 2-60 26-85 (86)
88 smart00410 IG_like Immunoglobu 99.3 1.8E-10 4E-15 56.2 9.1 59 2-60 26-85 (86)
89 KOG4194|consensus 99.2 2E-11 4.4E-16 79.4 5.3 65 1-67 643-710 (873)
90 cd05754 Ig3_Perlecan_like Thir 99.2 5.3E-11 1.1E-15 59.8 5.2 51 2-58 34-84 (85)
91 cd05749 Ig2_Tyro3_like Second 99.2 1.2E-10 2.7E-15 58.5 5.8 49 2-58 31-80 (81)
92 cd05896 Ig1_IL1RAPL-1_like Fir 99.2 1.9E-10 4.1E-15 60.3 5.9 57 2-60 43-104 (104)
93 PHA02826 IL-1 receptor-like pr 99.1 3.1E-10 6.7E-15 66.5 6.9 49 2-52 166-214 (227)
94 cd05871 Ig_Semaphorin_classIII 99.1 3.2E-10 6.9E-15 58.1 5.6 37 26-62 53-90 (91)
95 KOG4221|consensus 99.1 3.7E-10 7.9E-15 77.3 7.3 66 1-68 268-333 (1381)
96 cd05752 Ig1_FcgammaR_like Frst 99.1 1.6E-10 3.5E-15 57.7 4.1 36 2-48 33-68 (78)
97 cd05727 Ig2_Contactin-2-like S 99.1 2.2E-10 4.8E-15 59.4 4.5 49 2-52 36-86 (96)
98 cd05753 Ig2_FcgammaR_like Seco 99.1 2.6E-10 5.5E-15 57.5 4.6 50 2-59 32-82 (83)
99 cd07701 Ig1_Necl-3 First (N-te 99.1 1.5E-09 3.2E-14 55.9 7.4 58 2-60 29-95 (95)
100 smart00408 IGc2 Immunoglobulin 99.1 5.8E-10 1.3E-14 51.8 5.3 45 2-50 19-63 (63)
101 cd05872 Ig_Sema4B_like Immunog 99.1 1.4E-09 3.1E-14 55.2 6.8 56 1-61 26-81 (85)
102 PHA02785 IL-beta-binding prote 99.1 1.5E-09 3.3E-14 66.3 8.0 57 2-63 63-119 (326)
103 cd05713 Ig_MOG_like Immunoglob 99.0 3.8E-09 8.3E-14 54.4 7.6 37 24-60 63-99 (100)
104 PHA02826 IL-1 receptor-like pr 99.0 2.5E-09 5.4E-14 62.7 7.3 40 25-64 97-136 (227)
105 cd05860 Ig4_SCFR Fourth immuno 99.0 1.1E-08 2.4E-13 53.5 7.5 60 2-61 36-100 (101)
106 cd05882 Ig1_Necl-1 First (N-te 98.9 2.4E-08 5.1E-13 51.6 8.2 58 2-60 29-95 (95)
107 cd05718 Ig1_PVR_like First imm 98.9 1.8E-08 3.9E-13 51.5 7.6 38 24-61 60-98 (98)
108 KOG4222|consensus 98.9 2.2E-09 4.8E-14 73.2 5.1 63 2-67 164-229 (1281)
109 PHA02785 IL-beta-binding prote 98.9 1.3E-08 2.8E-13 62.3 7.9 52 2-53 255-319 (326)
110 cd05717 Ig1_Necl-1-3_like Firs 98.9 1.7E-08 3.6E-13 51.6 7.1 45 15-60 50-95 (95)
111 cd05759 Ig2_KIRREL3-like Secon 98.9 1.8E-08 4E-13 50.2 7.0 55 2-56 17-76 (82)
112 cd05885 Ig2_Necl-4 Second immu 98.9 6.5E-09 1.4E-13 52.3 5.0 51 1-52 16-69 (80)
113 PF13895 Ig_2: Immunoglobulin 98.9 8.9E-09 1.9E-13 50.3 5.3 49 2-60 31-80 (80)
114 cd07690 Ig1_CD4 First immunogl 98.9 8.2E-09 1.8E-13 53.3 4.8 31 23-53 62-92 (94)
115 PF00047 ig: Immunoglobulin do 98.8 6.1E-09 1.3E-13 49.4 3.2 44 2-45 19-64 (64)
116 cd05771 IgC_Tapasin_R Tapasin- 98.8 2.9E-08 6.3E-13 54.0 5.2 39 27-65 2-40 (139)
117 cd05775 Ig_SLAM-CD84_like_N N- 98.7 2.3E-07 4.9E-12 47.9 7.7 40 22-61 57-97 (97)
118 cd05886 Ig1_Nectin-1_like Firs 98.7 6E-08 1.3E-12 50.5 5.5 47 15-61 51-99 (99)
119 cd05887 Ig1_Nectin-3_like Firs 98.7 2.4E-07 5.2E-12 48.0 6.9 47 15-61 48-96 (96)
120 cd05774 Ig_CEACAM_D1 First imm 98.7 2E-07 4.3E-12 49.0 6.6 35 26-60 70-105 (105)
121 cd05888 Ig1_Nectin-4_like Frst 98.7 2E-07 4.3E-12 48.3 6.5 47 15-61 51-100 (100)
122 cd05714 Ig_CSPGs_LP Immunoglob 98.6 1.3E-07 2.9E-12 49.1 5.5 39 24-62 66-104 (106)
123 cd05845 Ig2_L1-CAM_like Second 98.6 9.3E-08 2E-12 49.5 4.2 48 2-52 36-85 (95)
124 cd05877 Ig_LP_like Immunoglobu 98.6 2.4E-07 5.2E-12 48.1 5.7 39 24-62 66-104 (106)
125 cd05741 Ig_CEACAM_D1_like Firs 98.6 3.4E-07 7.3E-12 46.2 6.1 35 26-60 57-92 (92)
126 cd05883 Ig2_Necl-2 Second immu 98.6 1E-06 2.2E-11 44.5 7.1 62 1-62 16-81 (82)
127 cd05878 Ig_Aggrecan_like Immun 98.6 1.5E-06 3.3E-11 45.8 8.0 39 24-62 70-108 (110)
128 cd05879 Ig_P0 Immunoglobulin ( 98.5 1.3E-06 2.8E-11 46.6 7.7 36 24-59 78-115 (116)
129 cd05900 Ig_Aggrecan Immunoglob 98.5 6.9E-07 1.5E-11 47.4 6.0 47 16-62 61-110 (112)
130 cd05901 Ig_Versican Immunoglob 98.5 4.2E-06 9.2E-11 44.8 8.9 39 24-62 77-115 (117)
131 cd05902 Ig_Neurocan Immunoglob 98.5 1.5E-06 3.2E-11 46.1 7.1 39 24-62 70-108 (110)
132 cd04983 IgV_TCR_alpha_like Imm 98.4 1.9E-06 4E-11 44.8 6.4 36 15-50 57-94 (109)
133 cd00099 IgV Immunoglobulin var 98.4 1.1E-06 2.3E-11 45.3 5.4 36 15-50 54-91 (105)
134 cd05751 Ig1_LILRB1_like First 98.4 8.9E-07 1.9E-11 45.1 4.7 44 2-48 32-75 (91)
135 cd05881 Ig1_Necl-2 First (N-te 98.4 7.3E-06 1.6E-10 42.4 8.1 37 13-49 48-85 (95)
136 cd00096 Ig Immunoglobulin doma 98.4 4.5E-06 9.8E-11 38.4 6.2 51 1-51 14-68 (74)
137 PF13927 Ig_3: Immunoglobulin 98.4 7.4E-07 1.6E-11 42.7 3.5 25 23-47 51-75 (75)
138 KOG4194|consensus 98.3 1.6E-06 3.5E-11 57.2 4.9 63 1-65 738-800 (873)
139 cd05761 Ig2_Necl-1-4_like Seco 98.3 1E-05 2.2E-10 40.4 6.9 51 1-52 16-71 (82)
140 PHA02633 hypothetical protein; 98.3 5.4E-06 1.2E-10 39.7 5.2 41 24-64 16-56 (63)
141 PHA02987 Ig domain OX-2-like p 98.3 1E-05 2.3E-10 46.4 7.2 48 15-62 73-123 (189)
142 KOG4221|consensus 98.2 4.5E-06 9.8E-11 58.1 6.3 60 2-64 172-232 (1381)
143 cd07705 Ig2_Necl-1 Second immu 98.2 2.1E-05 4.5E-10 39.5 7.2 51 1-52 16-72 (83)
144 PF11465 Receptor_2B4: Natural 98.2 1.1E-05 2.4E-10 42.5 5.9 39 24-62 69-108 (108)
145 cd05846 Ig1_MRC-OX-2_like Firs 98.2 6.2E-06 1.3E-10 42.3 4.7 38 24-61 59-97 (97)
146 cd00098 IgC Immunoglobulin Con 98.2 6.7E-06 1.4E-10 41.6 4.7 50 2-51 32-87 (95)
147 cd04980 IgV_L_kappa Immunoglob 98.2 1.3E-05 2.8E-10 41.6 5.8 34 15-48 60-93 (106)
148 cd05880 Ig_EVA1 Immunoglobulin 98.1 7E-06 1.5E-10 43.5 4.5 36 24-59 77-114 (115)
149 cd05899 IgV_TCR_beta Immunoglo 98.1 9.6E-06 2.1E-10 42.4 5.0 36 15-50 60-96 (110)
150 KOG4222|consensus 98.1 4E-06 8.6E-11 58.0 4.3 63 2-67 257-319 (1281)
151 PF07686 V-set: Immunoglobulin 98.1 2.9E-05 6.3E-10 39.8 6.2 46 15-60 66-114 (114)
152 cd05884 Ig2_Necl-3 Second immu 98.1 3.5E-05 7.7E-10 38.8 6.2 51 2-52 17-72 (83)
153 cd05715 Ig_P0-like Immunoglobu 98.0 1.6E-05 3.4E-10 42.0 4.8 35 25-59 79-115 (116)
154 cd04982 IgV_TCR_gamma Immunogl 98.0 2.1E-05 4.6E-10 41.3 5.2 34 15-48 64-99 (116)
155 cd04984 IgV_L_lambda Immunoglo 98.0 5.2E-05 1.1E-09 38.8 5.6 34 15-48 52-85 (98)
156 cd05889 Ig1_DNAM-1_like First 97.9 5.2E-05 1.1E-09 39.3 5.4 36 24-59 58-94 (96)
157 cd05711 Ig_FcalphaRI Immunoglo 97.8 5.2E-05 1.1E-09 38.8 4.3 45 2-46 31-75 (94)
158 cd05712 Ig_Siglec_N Immunoglob 97.7 0.00018 3.9E-09 38.2 5.7 27 22-48 76-102 (119)
159 PHA03376 BARF1; Provisional 97.7 0.00042 9E-09 40.3 7.4 31 22-52 83-113 (221)
160 PF07354 Sp38: Zona-pellucida- 97.7 9.3E-05 2E-09 44.5 4.1 45 2-49 15-60 (271)
161 smart00406 IGv Immunoglobulin 97.6 0.00012 2.6E-09 35.6 3.4 30 15-44 49-80 (81)
162 cd05755 Ig2_ICAM-1_like Second 97.6 0.00024 5.3E-09 37.1 4.6 50 2-52 36-88 (100)
163 cd07691 Ig_CD3_gamma_delta Imm 97.6 0.00018 3.9E-09 35.2 3.8 46 2-61 19-64 (69)
164 cd05772 IgC_SIRP Signal-regula 97.6 0.0014 3E-08 34.7 7.3 50 2-52 40-95 (111)
165 smart00407 IGc1 Immunoglobulin 97.5 0.0012 2.7E-08 32.3 6.0 49 2-50 18-72 (75)
166 cd07706 IgV_TCR_delta Immunogl 97.4 0.00074 1.6E-08 35.5 5.3 34 15-48 59-94 (116)
167 cd05720 Ig_CD8_alpha Immunoglo 97.4 0.00036 7.8E-09 36.3 4.0 32 16-47 59-90 (104)
168 cd05716 Ig_pIgR Immunoglobulin 97.3 0.0011 2.3E-08 33.8 5.1 35 15-49 51-87 (98)
169 cd07700 IgV_CD8_beta Immunoglo 97.3 0.00061 1.3E-08 35.5 4.1 25 23-47 69-93 (107)
170 cd07694 Ig2_CD4 Second immunog 97.3 0.0045 9.7E-08 31.7 6.9 39 24-62 49-87 (88)
171 KOG1480|consensus 97.3 0.00016 3.4E-09 48.9 1.8 57 2-61 162-219 (909)
172 KOG3515|consensus 97.1 0.00072 1.6E-08 45.7 3.9 64 2-65 434-497 (741)
173 cd07698 IgC_MHC_I_alpha3 Class 97.0 0.0039 8.5E-08 31.7 5.2 47 2-52 33-86 (93)
174 cd05719 Ig2_PVR_like Second im 96.9 0.012 2.6E-07 30.3 6.2 32 25-56 58-89 (95)
175 cd05766 IgC_MHC_II_beta Class 96.8 0.015 3.2E-07 29.8 6.3 48 2-52 33-86 (94)
176 cd07692 Ig_CD3_epsilon Immunog 96.7 0.0045 9.8E-08 30.0 3.8 36 2-48 21-56 (65)
177 cd07699 IgC_L Immunoglobulin C 96.7 0.0099 2.1E-07 30.7 5.4 51 2-52 36-92 (100)
178 cd05847 IgC_CH2_IgE CH2 domain 96.7 0.019 4E-07 29.5 6.2 51 2-52 33-89 (94)
179 cd04981 IgV_H Immunoglobulin ( 96.6 0.0086 1.9E-07 31.7 4.6 33 15-47 63-97 (117)
180 cd05770 IgC_beta2m Class I maj 96.6 0.031 6.7E-07 28.7 6.4 46 2-51 34-85 (93)
181 cd05767 IgC_MHC_II_alpha Class 96.5 0.02 4.3E-07 29.4 5.6 47 2-51 34-86 (94)
182 cd05768 IgC_CH4 CH4 domain (fo 96.5 0.01 2.2E-07 30.9 4.5 51 2-52 35-94 (102)
183 PF07654 C1-set: Immunoglobuli 96.4 0.013 2.8E-07 29.0 4.5 47 2-51 27-79 (83)
184 cd05771 IgC_Tapasin_R Tapasin- 96.4 0.04 8.8E-07 29.7 6.7 26 26-51 108-133 (139)
185 cd07703 Ig2_Nectin-2_like Seco 96.3 0.043 9.3E-07 28.3 6.1 33 26-58 59-91 (95)
186 PF08204 V-set_CD47: CD47 immu 96.3 0.018 3.9E-07 31.5 4.7 58 2-60 49-119 (130)
187 PHA02982 hypothetical protein; 96.1 0.021 4.5E-07 33.8 4.6 36 17-52 91-126 (251)
188 PHA03042 CD47-like protein; Pr 96.0 0.04 8.7E-07 33.6 5.6 53 2-61 53-105 (286)
189 PHA03283 envelope glycoprotein 96.0 0.056 1.2E-06 35.6 6.6 42 23-64 131-172 (542)
190 cd07697 IgC_TCR_gamma T cell r 95.9 0.02 4.3E-07 29.6 3.6 46 2-49 35-85 (96)
191 PF08205 C2-set_2: CD80-like C 95.9 0.066 1.4E-06 26.5 5.5 51 2-52 32-87 (89)
192 cd05769 IgC_TCR_beta T cell re 95.7 0.085 1.9E-06 28.1 5.6 53 2-54 37-97 (115)
193 KOG4597|consensus 95.0 0.042 9.2E-07 36.0 3.6 37 26-62 257-293 (560)
194 cd07696 IgC_CH3 CH3 domain (th 94.7 0.27 5.8E-06 25.3 6.3 52 2-53 34-90 (96)
195 PF05790 C2-set: Immunoglobuli 94.0 0.37 8E-06 24.1 5.2 35 27-61 44-79 (80)
196 PHA03286 envelope glycoprotein 93.8 0.31 6.8E-06 31.9 5.5 39 24-62 125-164 (492)
197 cd04985 IgC_CH1 CH1 domain (fi 93.7 0.16 3.4E-06 26.1 3.5 47 2-49 35-87 (95)
198 cd04986 IgC_CH2 CH2 domain (se 93.1 0.18 3.8E-06 26.3 3.1 49 2-51 39-91 (99)
199 PF01688 Herpes_gI: Alphaherpe 92.8 0.76 1.6E-05 26.1 5.5 35 25-59 123-157 (161)
200 PF06832 BiPBP_C: Penicillin-B 92.4 0.77 1.7E-05 23.0 6.1 42 2-54 45-86 (89)
201 PF11141 DUF2914: Protein of u 92.2 0.7 1.5E-05 22.2 7.0 57 2-60 9-65 (66)
202 PF02480 Herpes_gE: Alphaherpe 91.2 0.062 1.3E-06 34.8 0.0 38 25-62 88-126 (439)
203 KOG3515|consensus 90.5 0.22 4.7E-06 34.3 2.1 62 1-67 39-101 (741)
204 PHA03282 envelope glycoprotein 90.1 1.6 3.5E-05 28.9 5.5 20 27-46 125-144 (540)
205 cd05721 IgV_CTLA-4 Immunoglobu 89.3 1.1 2.5E-05 24.0 3.9 23 23-45 71-93 (115)
206 PHA03290 envelope glycoprotein 88.1 3.2 6.9E-05 26.4 5.7 27 24-50 127-153 (357)
207 PHA03289 envelope glycoprotein 88.0 2.7 5.8E-05 26.6 5.3 36 25-60 121-156 (352)
208 PHA03281 envelope glycoprotein 88.0 1.8 3.9E-05 29.2 4.8 39 26-64 298-337 (642)
209 PHA03292 envelope glycoprotein 87.2 3.4 7.4E-05 26.7 5.5 35 25-59 127-161 (413)
210 PHA03291 envelope glycoprotein 87.2 3.5 7.6E-05 26.4 5.5 38 24-61 127-164 (401)
211 PF06328 Lep_receptor_Ig: Ig-l 85.4 3.4 7.5E-05 21.0 4.7 44 1-46 39-82 (89)
212 cd07689 Ig2_VCAM-1 Second immu 84.6 3.4 7.3E-05 21.7 3.9 47 2-49 35-86 (99)
213 PHA02914 Immunoglobulin-like d 83.3 0.72 1.6E-05 30.0 1.3 31 24-54 344-374 (500)
214 KOG0613|consensus 82.8 0.54 1.2E-05 34.1 0.7 60 2-61 367-428 (1205)
215 PHA03189 UL14 tegument protein 82.2 9.1 0.0002 24.2 5.7 33 28-61 136-168 (348)
216 cd07704 Ig2_Nectin-3-4_like Se 78.0 2.7 5.8E-05 21.8 2.2 27 26-52 61-87 (97)
217 PHA02914 Immunoglobulin-like d 75.5 17 0.00036 24.1 5.5 39 25-63 80-119 (500)
218 PHA03282 envelope glycoprotein 75.2 7.7 0.00017 25.9 4.1 37 23-59 330-367 (540)
219 COG4953 PbpC Membrane carboxyp 71.1 15 0.00032 25.8 4.7 40 2-52 685-724 (733)
220 PHA03286 envelope glycoprotein 69.1 18 0.0004 24.1 4.7 33 27-59 308-341 (492)
221 PF02440 Adeno_E3_CR1: Adenovi 67.0 9.9 0.00021 18.2 2.5 14 26-39 50-63 (63)
222 PF02480 Herpes_gE: Alphaherpe 65.8 6 0.00013 25.9 2.1 36 23-58 266-302 (439)
223 smart00089 PKD Repeats in poly 65.8 14 0.00029 17.6 4.4 26 35-60 51-78 (79)
224 PHA03283 envelope glycoprotein 65.5 24 0.00052 24.0 4.8 39 20-58 309-348 (542)
225 PHA03269 envelope glycoprotein 64.6 30 0.00064 23.5 5.0 39 26-64 289-330 (566)
226 KOG0859|consensus 63.7 23 0.0005 21.1 4.0 40 10-52 35-74 (217)
227 PHA03273 envelope glycoprotein 61.2 36 0.00079 22.8 4.9 39 26-64 198-238 (486)
228 PHA02865 MHC-like TNF binding 61.0 17 0.00037 23.2 3.4 18 33-50 288-305 (338)
229 PF11327 DUF3129: Protein of u 55.2 19 0.00041 20.9 2.8 24 23-46 90-113 (184)
230 KOG0613|consensus 55.0 1.6 3.4E-05 31.9 -1.9 52 2-53 221-272 (1205)
231 PHA03281 envelope glycoprotein 54.3 33 0.00072 23.6 4.0 37 23-59 472-509 (642)
232 PHA03240 envelope glycoprotein 53.1 5.1 0.00011 24.1 0.2 29 24-52 103-131 (258)
233 PF08329 ChitinaseA_N: Chitina 51.2 38 0.00082 18.7 3.4 28 35-62 79-109 (133)
234 PF13670 PepSY_2: Peptidase pr 51.0 12 0.00026 18.4 1.4 24 29-52 44-67 (83)
235 PF03422 CBM_6: Carbohydrate b 49.1 24 0.00052 18.3 2.4 21 26-46 32-52 (125)
236 KOG1026|consensus 47.5 11 0.00024 26.6 1.2 31 34-64 336-366 (774)
237 PF02124 Marek_A: Marek's dise 47.5 61 0.0013 19.4 6.1 45 2-46 9-60 (211)
238 PHA03270 envelope glycoprotein 43.8 98 0.0021 20.8 5.4 38 27-64 183-222 (466)
239 KOG3611|consensus 43.7 55 0.0012 23.2 4.0 36 27-62 613-649 (737)
240 TIGR02073 PBP_1c penicillin-bi 43.5 1.2E+02 0.0025 21.5 6.5 40 2-52 680-719 (727)
241 PRK11240 penicillin-binding pr 43.1 1.2E+02 0.0026 21.6 5.9 38 2-52 727-764 (772)
242 PHA02935 Hypothetical protein; 37.7 92 0.002 18.9 3.8 58 3-60 70-137 (349)
243 PF15025 DUF4524: Domain of un 37.2 80 0.0017 17.8 4.8 36 11-46 112-147 (148)
244 PHA03271 envelope glycoprotein 36.9 1.3E+02 0.0029 20.2 5.7 40 25-64 206-247 (490)
245 PF05083 LST1: LST-1 protein; 35.9 33 0.00071 16.9 1.5 17 32-48 56-72 (74)
246 PF11589 DUF3244: Domain of un 33.6 74 0.0016 16.4 4.1 25 33-57 79-104 (106)
247 COG5475 Uncharacterized small 33.1 62 0.0013 15.3 4.0 28 26-55 18-45 (60)
248 cd00146 PKD polycystic kidney 32.9 62 0.0013 15.3 3.8 24 36-59 54-80 (81)
249 PF14535 AMP-binding_C_2: AMP- 32.2 74 0.0016 16.0 3.5 25 37-61 19-43 (96)
250 smart00736 CADG Dystroglycan-t 31.5 76 0.0017 15.9 4.6 29 37-65 65-96 (97)
251 COG4841 Uncharacterized protei 30.1 8.6 0.00019 19.9 -1.1 19 2-20 10-28 (95)
252 PF02494 HYR: HYR domain; Int 29.7 75 0.0016 15.3 3.0 22 38-59 56-80 (81)
253 PF01067 Calpain_III: Calpain 29.6 96 0.0021 16.5 4.3 26 37-62 115-140 (147)
254 PF13220 DUF4028: Protein of u 28.5 57 0.0012 15.3 1.6 18 35-52 7-24 (65)
255 PF13620 CarboxypepD_reg: Carb 28.3 77 0.0017 14.9 4.1 32 27-61 39-70 (82)
256 cd00604 IPT_CGTD IPT domain (d 28.2 87 0.0019 15.5 2.5 25 36-60 55-79 (81)
257 TIGR02171 Fb_sc_TIGR02171 Fibr 27.5 85 0.0018 23.0 2.9 29 24-52 375-403 (912)
258 KOG1428|consensus 27.4 1.6E+02 0.0034 24.0 4.2 49 14-64 2095-2143(3738)
259 KOG3348|consensus 27.1 99 0.0022 15.8 3.0 24 39-62 17-40 (85)
260 cd02849 CGTase_C_term Cgtase ( 27.0 90 0.002 15.4 2.3 22 37-58 58-79 (81)
261 PHA02811 putative host range p 24.2 1.3E+02 0.0029 17.7 2.9 25 28-52 16-40 (197)
262 KOG3141|consensus 24.2 2E+02 0.0043 18.3 4.2 38 3-45 75-112 (310)
263 PF03287 Pox_C7_F8A: Poxvirus 23.7 1.5E+02 0.0033 16.8 3.1 25 28-52 16-40 (149)
264 PF08043 Xin: Xin repeat; Int 23.6 52 0.0011 11.4 0.8 10 2-11 6-15 (16)
265 KOG0200|consensus 23.6 78 0.0017 21.6 2.1 23 25-47 12-34 (609)
266 TIGR01451 B_ant_repeat conserv 23.3 90 0.0019 14.0 4.2 30 32-63 7-36 (53)
267 PF08400 phage_tail_N: Prophag 22.9 1.3E+02 0.0029 16.7 2.6 38 8-46 14-54 (134)
268 smart00604 MD MD domain. 22.7 1.6E+02 0.0035 16.6 3.2 22 38-60 6-27 (145)
269 PF01345 DUF11: Domain of unkn 22.6 1E+02 0.0023 14.5 4.3 32 30-63 34-65 (76)
270 smart00720 calpain_III calpain 21.5 1.4E+02 0.0031 16.0 2.6 26 37-62 111-136 (143)
271 PF15096 G6B: G6B family 21.4 1E+02 0.0022 18.3 2.1 27 33-62 81-107 (224)
272 PF04668 Tsg: Twisted gastrula 21.4 47 0.001 18.4 0.7 8 2-9 102-109 (132)
273 COG5246 PRP11 Splicing factor 21.3 67 0.0014 19.0 1.3 16 33-48 46-61 (222)
274 KOG0227|consensus 20.4 37 0.0008 20.2 0.1 15 33-47 46-60 (222)
No 1
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.89 E-value=6.9e-22 Score=102.64 Aligned_cols=67 Identities=24% Similarity=0.345 Sum_probs=62.3
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI 67 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~ 67 (68)
.+.|+|||.+|..+.++.+...+..+.|.|.+++++|+|.|+|.|.|+.|.+.+++.|.|.++|++.
T Consensus 31 ~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 31 TCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred ceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCCCC
Confidence 3789999999987788888888888999999999999999999999999999999999999999874
No 2
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.81 E-value=1e-18 Score=86.23 Aligned_cols=60 Identities=23% Similarity=0.360 Sum_probs=54.6
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|+|+|.++..+.++.+...+..+.|.|.+++.+|+|.|+|.|.|..|.+++++.|.|
T Consensus 15 ~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 15 TVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred eEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 378999999998778888887777889999999999999999999999999999998875
No 3
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.78 E-value=1.5e-18 Score=88.24 Aligned_cols=63 Identities=19% Similarity=0.100 Sum_probs=52.2
Q ss_pred eEEEeCCEEecc---CCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044 2 FDIFCPRSQVRS---EGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK 64 (68)
Q Consensus 2 ~~W~k~g~~l~~---~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p 64 (68)
+.|+|||++|.. +.++.+... ...+.|.|.+++..|+|.|+|.|.|.++...+++.|.|.++|
T Consensus 19 ~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP 85 (85)
T cd05853 19 FTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP 85 (85)
T ss_pred EEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence 689999999962 234443221 234589999999999999999999999999999999999988
No 4
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.77 E-value=7.4e-18 Score=85.65 Aligned_cols=60 Identities=22% Similarity=0.283 Sum_probs=53.1
Q ss_pred CeEEEeCCEEeccC-CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSE-GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~~-~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|+|+|+++... .++.+......+.|.|.++++.|+|.|+|.|.|..|.+.+++.|.|
T Consensus 26 ~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V 86 (86)
T cd05894 26 TVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86 (86)
T ss_pred eEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence 37899999999754 5787777677789999999999999999999999999999998875
No 5
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.77 E-value=1.2e-17 Score=85.17 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=55.2
Q ss_pred CeEEEeCCEEeccC-CCEEEEEe--C--CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044 1 MFDIFCPRSQVRSE-GNVEIVNV--P--YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN 66 (68)
Q Consensus 1 ~~~W~k~g~~l~~~-~~~~~~~~--~--~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~ 66 (68)
.+.|+|++.++... .++.+... + ..+.|.|.++..+|+|.|+|.|.|..|..++.+.|.|.++|.+
T Consensus 17 ~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~~ 87 (88)
T cd05735 17 IVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDP 87 (88)
T ss_pred EEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCCC
Confidence 37899999999643 46655432 1 2368999999999999999999999999999999999999975
No 6
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.77 E-value=1e-17 Score=84.99 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=52.1
Q ss_pred eEEEeCCEEeccC---CCEE-EEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044 2 FDIFCPRSQVRSE---GNVE-IVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK 64 (68)
Q Consensus 2 ~~W~k~g~~l~~~---~~~~-~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p 64 (68)
+.|+|||.+|... .++. +......+.|.|.+++..|+|.|+|.|.|.+|..++++.|.|.++|
T Consensus 19 v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P 85 (85)
T cd05854 19 FTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP 85 (85)
T ss_pred EEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence 6899999998643 2332 2222345689999999999999999999999999999999999987
No 7
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.77 E-value=8.4e-18 Score=83.68 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=50.8
Q ss_pred CeEEEeCCEEecc-CCCEEEEEeC-CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFCPRSQVRS-EGNVEIVNVP-YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~-~~~~~~~~~~-~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|+|+|.+|.. +.++.+.... +...|.|.+++.+|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 14 ~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 14 KIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred eEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 3789999999974 4677665443 3458999999999999999999999999999999875
No 8
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.75 E-value=3.7e-17 Score=82.37 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=48.1
Q ss_pred CeEEEeCCEEeccCCCEEEEEe-------CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNV-------PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT 59 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~-------~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~ 59 (68)
.++|+|||++|..+.++.+... ...+.|.|.+++..|+|.|+|.|.|.+|.+.+.+.|.
T Consensus 14 ~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 14 TLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred cEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 4799999999987665443221 2356799999999999999999999999999888765
No 9
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.74 E-value=4.4e-17 Score=83.43 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=52.2
Q ss_pred CeEEEeCCEEeccCCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|+|+|.++....++.+... ...+.|.|.+++.+|+|.|+|.|.|..|.+...+.|.|
T Consensus 32 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 92 (92)
T cd05737 32 EVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV 92 (92)
T ss_pred eEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence 3789999999987778777654 34568999999999999999999999999999988875
No 10
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.74 E-value=8.4e-17 Score=79.85 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=50.3
Q ss_pred CeEEEeCCEEecc-CCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFCPRSQVRS-EGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~-~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|+|+|.++.. ..++.+... .+.+.|.|.+++.+|+|.|+|.|.|.+|...+.+.|.|
T Consensus 14 ~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 14 QIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred eEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 3789999999974 356666543 34567999999999999999999999999999998875
No 11
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.74 E-value=4.8e-17 Score=82.13 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=51.2
Q ss_pred eEEEeCCEEeccCC---CEE-EEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044 2 FDIFCPRSQVRSEG---NVE-IVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK 64 (68)
Q Consensus 2 ~~W~k~g~~l~~~~---~~~-~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p 64 (68)
+.|+|||.+|.... ++. .......+.|.|.+++..|+|.|+|.|.|..|...+++.|.|.++|
T Consensus 19 ~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP 85 (85)
T cd04970 19 FTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP 85 (85)
T ss_pred EEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence 58999999986432 222 1222345689999999999999999999999999999999999987
No 12
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.73 E-value=4.7e-17 Score=81.77 Aligned_cols=59 Identities=22% Similarity=0.342 Sum_probs=47.9
Q ss_pred CeEEEeCCEEeccCCCEEEE-----EeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIV-----NVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT 59 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~-----~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~ 59 (68)
.++|+|||++|..+.++... .....+.|.|.++...|+|.|+|.|+|.+|.+..++.+.
T Consensus 14 ti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 14 TLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred ceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 47999999999876654321 123456899999999999999999999999998888764
No 13
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.73 E-value=5.6e-17 Score=80.64 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=50.4
Q ss_pred CeEEEeCCEEecc-CCCEEEEEeC-CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFCPRSQVRS-EGNVEIVNVP-YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~-~~~~~~~~~~-~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|+|+|.++.. ..++.+.... +.+.|.|.+++.+|+|.|+|.|.|.+|..++++.|.|
T Consensus 14 ~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 14 QIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred EEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 3789999999974 3566665443 3457999999999999999999999999999999875
No 14
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.73 E-value=6e-17 Score=84.58 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=50.2
Q ss_pred CeEEEeCCEEeccCCCEEEEEeC-----CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVP-----YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~-----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
.+.|+|||.+|.......+.... ..+.|.|.++.++|+|.|+|.|.|+.|.++.++.|.|.
T Consensus 35 ~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 35 HINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred ccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence 37899999999855444333321 25789999999999999999999999999999999875
No 15
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.73 E-value=1.1e-16 Score=80.97 Aligned_cols=59 Identities=25% Similarity=0.366 Sum_probs=56.2
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+.|+++|.++..+.++.+...+..+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.|
T Consensus 32 v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 32 VTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV 90 (90)
T ss_dssp EEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence 78999999999889999998889999999999999999999999999999999999876
No 16
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.71 E-value=1.1e-16 Score=83.48 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=49.9
Q ss_pred CeEEEeCCEEeccCCCEEEEE------eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVN------VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~------~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
.+.|+|||++|..+.+..+.. ....+.|.|.+++.+|+|.|+|.|.|+.|.++.++.|.|.
T Consensus 34 ~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 34 QIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred ceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence 478999999998655433321 1235789999999999999999999999999999998874
No 17
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.71 E-value=1.1e-16 Score=79.23 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=49.3
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|+|++.++..+.++.+.. ...|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus 17 ~v~W~k~~~~l~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 17 KFSWSKGTELLVNNSRISIWD---DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred EEEEEeCCEecccCCCEEEcC---CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 378999999988777776643 236999999999999999999999999999999875
No 18
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.71 E-value=2.4e-16 Score=78.02 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=51.7
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~ 62 (68)
+.|+|+|..+..+.+.++......+.|.|.+++..|+|.|+|.|.|..|..+.++.|.|.+
T Consensus 15 v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 15 LTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred EEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 6899999999765444444445556899999999999999999999999999999999864
No 19
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.70 E-value=4e-16 Score=79.79 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=52.2
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT 59 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~ 59 (68)
+.|+|+|.++..+.++.+......+.|.|.+++.+|+|.|+|.|.|..|..++++.|+
T Consensus 35 v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 92 (92)
T cd05747 35 VTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTLT 92 (92)
T ss_pred EEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEeC
Confidence 6899999999877788887777778999999999999999999999999999888763
No 20
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.70 E-value=3.6e-16 Score=76.72 Aligned_cols=57 Identities=19% Similarity=0.336 Sum_probs=48.3
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.++|+|+|.++....++.+.... .|.|.+++.+|+|.|+|.|.|..|..++++.|.|
T Consensus 15 ~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 15 TVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred EEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 37899999999877777654432 4778899999999999999999999999999875
No 21
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.68 E-value=9.9e-16 Score=80.77 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=52.7
Q ss_pred CeEEEeCCEEecc-CCCEEEEEeC----CeEEEEEcCCC-CCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044 1 MFDIFCPRSQVRS-EGNVEIVNVP----YNTKLSIVDIL-RKNSGVYRIKAENASGKDEADVEITVLILKE 65 (68)
Q Consensus 1 ~~~W~k~g~~l~~-~~~~~~~~~~----~~~~l~I~~~~-~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~ 65 (68)
.+.|+|||.+|.. ..++.+.... ..+.|.|.++. .+|+|.|+|.|.|..|.+...+.|.|.++|+
T Consensus 39 ~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p~ 109 (109)
T cd05773 39 QFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRPD 109 (109)
T ss_pred EEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCCC
Confidence 3789999999974 3455433221 14689999997 5899999999999999999999999999985
No 22
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.68 E-value=3e-16 Score=76.66 Aligned_cols=53 Identities=15% Similarity=0.284 Sum_probs=44.2
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
.+.|+|||++|... ...+.|.|.++..+|+|.|+|.|.|+.|..+.++.|.+.
T Consensus 14 ~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 14 EFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred EEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 37899999999631 234589999999999999999999999988777777654
No 23
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.67 E-value=1.3e-15 Score=78.19 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=50.5
Q ss_pred eEEEeCCEEeccC-CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044 2 FDIFCPRSQVRSE-GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL 63 (68)
Q Consensus 2 ~~W~k~g~~l~~~-~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~ 63 (68)
+.|+|+|.++... .++ ......+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.|..+
T Consensus 35 v~W~k~g~~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~ 95 (95)
T cd05730 35 MTWTKDGEPIESGEEKY--SFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFAK 95 (95)
T ss_pred EEEEECCEECcCCCCEE--EEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEEeC
Confidence 7899999999754 333 33344567999999999999999999999999999999999754
No 24
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.67 E-value=6.5e-16 Score=76.26 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=47.5
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+.|+|+|.++....++.+.. ...|.|.+++..|+|.|+|.|.|..|...+.+.|.|
T Consensus 19 i~W~k~g~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 19 IAWTKGGSQLSVDRRHLVLS---SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred EEEEECCEECCCCCCeEEcc---CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 78999999998655554422 247999999999999999999999999999998875
No 25
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.67 E-value=7.9e-16 Score=79.68 Aligned_cols=61 Identities=20% Similarity=0.445 Sum_probs=49.1
Q ss_pred CeEEEe-CCEEecc-CCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCC-cceeEEEEEEEE
Q psy7044 1 MFDIFC-PRSQVRS-EGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENAS-GKDEADVEITVL 61 (68)
Q Consensus 1 ~~~W~k-~g~~l~~-~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~-g~~~~~~~l~V~ 61 (68)
.+.|++ +|.++.. +.++.+... +..+.|.|.+++.+|+|.|+|.|.|.+ |..++++.|.|+
T Consensus 32 ~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v~ 96 (96)
T cd05865 32 DISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKIF 96 (96)
T ss_pred EEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEEC
Confidence 378998 8887765 345555433 335789999999999999999999997 888999998874
No 26
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.66 E-value=9.6e-16 Score=75.35 Aligned_cols=56 Identities=25% Similarity=0.324 Sum_probs=46.3
Q ss_pred eEEEeCCEEeccCCCE---EEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEE
Q psy7044 2 FDIFCPRSQVRSEGNV---EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVE 57 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~---~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~ 57 (68)
+.|+|+|+++....+. .+......+.|.|.+++.+|+|.|+|.|.|..|.+..++.
T Consensus 16 ~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 16 FKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred EEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 6899999999855433 2444455678999999999999999999999999888765
No 27
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.66 E-value=9.1e-16 Score=74.87 Aligned_cols=55 Identities=22% Similarity=0.241 Sum_probs=47.3
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT 59 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~ 59 (68)
+.|+|+|.++..+.++.+.. ...|.|.+++.+|+|.|+|.|.|..|.+++++.|+
T Consensus 15 i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 15 ITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred EEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 78999999998777766532 34799999999999999999999999999988763
No 28
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.66 E-value=8.3e-16 Score=75.65 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=49.1
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|+|++.++...+++.+... ..|.|.++++.|+|.|+|.|.|..|..++++.|.|
T Consensus 17 ~v~W~k~~~~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 17 TISWSKGTELLTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred EEEEEECCEEcccCCCEEECCC---CeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 3789999999987777765322 36999999999999999999999999999999875
No 29
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.66 E-value=9.9e-16 Score=75.27 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=46.4
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
.+.|+|||.+|..+.++. ...+.|.|.+++..|+|.|+|.|.|..|..+..+.+.+.
T Consensus 14 ~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 14 EIQWYKNGKLISEKNRTK----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred EEEEEECCEECCCCCEEE----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 368999999998654432 234679999999999999999999999988777777654
No 30
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.66 E-value=7.1e-16 Score=75.83 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=43.5
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|+|||.+|....++ . ..+.|.|.++..+|+|.|+|.|.|..|..+....+.+
T Consensus 14 ~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 14 EVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred EEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 37899999999754332 1 2347999999999999999999999997766655554
No 31
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.66 E-value=2.9e-15 Score=75.27 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=47.9
Q ss_pred eEEEeCCEEeccCCCE-EEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNV-EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~-~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+.|+|+|.++..+.+. ..........|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus 26 i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 85 (85)
T cd05857 26 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 85 (85)
T ss_pred EEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence 7899999999865443 1222334567999999999999999999999999999998875
No 32
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.65 E-value=3.5e-15 Score=76.00 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=49.8
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|+++|.++..............+.|.|.+++..|.|.|+|.|.|..|...+.+.|.|
T Consensus 31 ~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v 90 (90)
T cd04972 31 KVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV 90 (90)
T ss_pred eEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence 378999999987554443444455678999999999999999999999999999998875
No 33
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.65 E-value=2.7e-15 Score=74.72 Aligned_cols=58 Identities=19% Similarity=0.138 Sum_probs=49.9
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT 59 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~ 59 (68)
+.|++++.++....++.+....+.+.|.|.+++.+|+|.|+|.|.|..|...+.+.+.
T Consensus 18 v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 18 INWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred EEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 7899999999877788777666678999999999999999999999999886665544
No 34
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.65 E-value=2.9e-15 Score=74.55 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=46.7
Q ss_pred CeEEEeCCEEeccCC-CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEc
Q psy7044 1 MFDIFCPRSQVRSEG-NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLI 62 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~-~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~ 62 (68)
.+.|+|+|.+|.... ++.+. .....|.|.+++.+|+|.|.|.|.|.+|.. .+.+.|.|.|
T Consensus 14 ~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~d 76 (77)
T cd05760 14 TYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSIID 76 (77)
T ss_pred cEEEEECCEECCCCCccEEEe--CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEec
Confidence 378999999997543 33332 234589999999999999999999999977 4466776665
No 35
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.65 E-value=3.3e-15 Score=76.88 Aligned_cols=59 Identities=24% Similarity=0.420 Sum_probs=49.7
Q ss_pred eEEEe-CCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEE
Q psy7044 2 FDIFC-PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITV 60 (68)
Q Consensus 2 ~~W~k-~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V 60 (68)
+.|++ +|.++..+.++.+......+.|.|.+++.+|+|.|+|.|.|..|.. ..++.|.|
T Consensus 31 v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 31 IDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred EEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 68998 5888887778877766667799999999999999999999999976 66666665
No 36
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.65 E-value=2.9e-15 Score=76.81 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=50.6
Q ss_pred eEEEeCCEEeccCCCEEEEEeCC-eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPY-NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~-~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+.|+|+|.++....++.+....+ .+.|.|.+++.+|+|.|+|.|.|..|.+++++.|.|
T Consensus 33 i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~ 92 (92)
T cd05891 33 VIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV 92 (92)
T ss_pred EEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence 68999999998777776654433 457999999999999999999999999999998875
No 37
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.65 E-value=2e-15 Score=74.43 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=48.1
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
+.|+++|.++...... .........|.|.++++.|+|.|+|.|.|..|...+.+.|.|.
T Consensus 18 i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 18 ITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred EEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 7899999999754332 1223334679999999999999999999999999999999874
No 38
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.64 E-value=2.5e-15 Score=74.67 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=46.8
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
.++|+|+|+++...........+ ...|.|.+++..|+|.|+|.|+|..|...+.+.|.|+
T Consensus 17 ~i~W~k~g~~i~~~~~~~~~~~~-~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 17 SISWLTNGVPIEIAPTDPSRKVD-GDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred eEEEEECCEEccccCCCceEEec-CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 37899999999643221111122 2368999999999999999999999999999999874
No 39
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.64 E-value=3.1e-15 Score=74.04 Aligned_cols=57 Identities=16% Similarity=0.323 Sum_probs=46.1
Q ss_pred eEEEeCCEEeccC----CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044 2 FDIFCPRSQVRSE----GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEI 58 (68)
Q Consensus 2 ~~W~k~g~~l~~~----~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l 58 (68)
+.|+|+|+++... .++.+......+.|.|.+++.+|+|.|+|.|.|+.|...+++.+
T Consensus 16 ~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~~ 76 (76)
T cd05895 16 FKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTANV 76 (76)
T ss_pred eEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEeC
Confidence 6899999999632 23444444556789999999999999999999999998887753
No 40
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.64 E-value=4e-15 Score=73.73 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=46.5
Q ss_pred eEEEeCCEEeccCCCE-EEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNV-EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~-~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
++|+|+|.++...... .... ....|.|.++++.|+|.|+|.|.|..|...+.+.|.|.
T Consensus 18 i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 76 (76)
T cd05867 18 ITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHVV 76 (76)
T ss_pred EEEEECCEECCCCCCCceEEe--eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEEC
Confidence 7899999999753211 1221 23469999999999999999999999999999998873
No 41
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.63 E-value=2e-15 Score=75.45 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=47.3
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+.|+|||.+|....++.+. . ..|.|.+++..|+|.|+|.|.|..|.....+.|.|
T Consensus 25 v~W~k~g~~l~~~~~~~~~--~--~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 25 INWTKDGVQLGENNRTRIT--G--EEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred EEEeeCCcCCCCCceEEEe--C--CEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 7899999999876676653 2 37999999999999999999999999888887765
No 42
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.62 E-value=3.9e-15 Score=73.51 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=45.8
Q ss_pred CeEEEeCCEEec---cCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 1 MFDIFCPRSQVR---SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 1 ~~~W~k~g~~l~---~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
.+.|+|+|.+.. ...++.+. ...+.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|+
T Consensus 14 ~v~W~k~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 75 (75)
T cd05763 14 QIAWQKDGGTDFPAARERRMHVM--PEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75 (75)
T ss_pred EEEEEeCCCccCCcccccceEEe--cCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence 378999987532 12344332 233479999999999999999999999999999999873
No 43
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.62 E-value=8.2e-15 Score=75.59 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=48.2
Q ss_pred eEEEeCCEEeccC-----CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCPRSQVRSE-----GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~~-----~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
++|++++.++... .++.+......+.|.|.+++.+|+|.|+|.|.|..|.+++++.|.|
T Consensus 34 v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 34 ITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence 7899999887532 2344444444578999999999999999999999999999988875
No 44
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.61 E-value=5.5e-15 Score=72.50 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=46.7
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|+|++.++... +... ......|.|.+++.+|+|.|+|.|.|..|..++++.|.|
T Consensus 14 ~v~W~k~~~~~~~~-~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 14 EVHWDRIDGPLSPN-RTKK--LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred eEEEEECCcCCCCC-ceeE--EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 37899999988643 2222 233468999999999999999999999999999999887
No 45
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.61 E-value=5.6e-15 Score=74.68 Aligned_cols=55 Identities=27% Similarity=0.388 Sum_probs=47.7
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+.|+|+|.++....++.+.. ..|.|.+++..|+|.|+|.|.|..|...+++.|.|
T Consensus 31 v~W~k~g~~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 31 YRWLKNGQPLASENRIEVEA----GDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred EEEEECCEECCCCCeEEEeC----CEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 78999999998666665432 37999999999999999999999999999998875
No 46
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.61 E-value=6.4e-15 Score=71.70 Aligned_cols=55 Identities=29% Similarity=0.367 Sum_probs=45.9
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+.|+|++..+.. .++.+. ....|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 15 v~W~k~~~~~~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 15 VLWRKEDGELPK-GRAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred EEEEECCccCCC-CcEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 789999888763 455544 2347999999999999999999999999999988875
No 47
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.60 E-value=1.2e-14 Score=74.47 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=48.4
Q ss_pred CeEEEeCCEEeccC-----CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSE-----GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~~-----~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|++++..+... .++.+......+.|.|.+++.+|+|.|+|.|.|..|.++.++.|.|
T Consensus 32 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 32 EITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred cEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence 37899999777532 2444444445678999999999999999999999999999888765
No 48
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.58 E-value=2e-14 Score=70.98 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=45.1
Q ss_pred eEEEeCCEEecc--CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEE
Q psy7044 2 FDIFCPRSQVRS--EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~--~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V 60 (68)
+.|+|++.++.. ..++.. .. ...|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 15 v~W~k~~~~~~~~~~~~~~~--~~-~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 15 ITWFKDFLPVDTTSNGRIKQ--LR-SGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred EEEEECCEECccCCCCCEEE--cC-CcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 789999999873 345543 22 3369999999999999999999999975 67788776
No 49
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.58 E-value=1.1e-14 Score=74.16 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=46.5
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|+|++.++....++.+ ....|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 32 ~v~W~k~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 32 VIRWRKILEPMPATAEISM----SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV 87 (88)
T ss_pred EEEEEECCcCCCCCCEEec----CCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 3789999998875443322 2347999999999999999999999999999999887
No 50
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.57 E-value=2.5e-14 Score=69.57 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=46.5
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|+|++.++... +... ......|.|.+++..|+|.|+|.|.|..|..+..+.|.|
T Consensus 14 ~v~W~k~~~~~~~~-~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 14 EISWIKIGGELPAD-RTKF--ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred eEEEEECCeECCCC-ceeE--ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 37899999988642 3222 234468999999999999999999999999999998876
No 51
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.56 E-value=3.9e-14 Score=72.15 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=47.8
Q ss_pred eEEEeCCEEe--------ccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044 2 FDIFCPRSQV--------RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK 64 (68)
Q Consensus 2 ~~W~k~g~~l--------~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p 64 (68)
+.|+|+|..+ ....++.+.. ...|.|.+++.+|+|.|.|.|.|..|...+.+.|.|.+.+
T Consensus 18 v~W~k~g~~~~~~~~~~~~~~~r~~v~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 85 (90)
T cd05726 18 IFWQKEGSQNLLFSYQPPQSSSRFSVSQ---TGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDVI 85 (90)
T ss_pred EEEEeCCCcceeecccCCCCCCeEEECC---CCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEeecc
Confidence 6899998753 1234554422 2369999999999999999999999999999999998753
No 52
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.55 E-value=7.1e-14 Score=72.18 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=47.3
Q ss_pred CeEEEe--CCEEecc-----CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFC--PRSQVRS-----EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k--~g~~l~~-----~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|+| +|.++.. ..++.+......+.|.|.+++.+|+|.|.|.|.|..|....++.|.|
T Consensus 32 ~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 32 EITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred eEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence 378999 4555542 24666654445678999999999999999999999999998888764
No 53
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.55 E-value=4.2e-14 Score=70.26 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=46.7
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|+|+|.++....... .......|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 25 ~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 25 DITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred cEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 378999999887443322 2334568999999999999999999999999988888764
No 54
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.55 E-value=7.1e-14 Score=71.64 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=44.8
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V 60 (68)
+.|+|+|.++.. .++.+. .....|.|.+++++|+|.|+|.|.|..|.. +..+.|.|
T Consensus 34 i~W~kng~~l~~-~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 34 IWWVNNGSLLVP-PRLQLS--NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEEEECCEECCC-CCEEEe--CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 789999999874 454443 334579999999999999999999999976 44667766
No 55
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.53 E-value=3.8e-14 Score=73.08 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=44.7
Q ss_pred eEEEeCCEEeccC--CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCPRSQVRSE--GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~~--~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+.|+|+|.++... .+.++... ...|.|.+++.+|+|.|.|.+.|..|..+..+.|.|
T Consensus 36 v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v 94 (94)
T cd05756 36 LTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV 94 (94)
T ss_pred EEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence 7899999775421 22233222 347999999999999999999999999999998875
No 56
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.53 E-value=1.2e-13 Score=67.85 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=44.7
Q ss_pred eEEEe-CCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFC-PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k-~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+.|++ ++..+....+..+.. ...|.|.++..+|+|.|+|.|.|+.|.+++.+.|.|
T Consensus 18 v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 18 IHWISPDGKLISNSSRTLVYD---NGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred EEEEeCCCEEecCCCeEEEec---CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 68997 677776555443322 236999999999999999999999999999988875
No 57
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.53 E-value=1.8e-13 Score=70.38 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=43.7
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|+|||.++....+. +. ....|.|.+++.+|+|.|+|.|.|..+.....+...+
T Consensus 31 ~i~Wyk~~~~i~~~~~~-~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t~ 86 (92)
T cd05757 31 PVQWYKDCKLLEGDRKR-FV---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRTI 86 (92)
T ss_pred cEEEeECCEECCCCccE-Ee---cCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEEEE
Confidence 37899999999854433 22 3458999999999999999999999997766554443
No 58
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.52 E-value=1.8e-13 Score=70.12 Aligned_cols=60 Identities=20% Similarity=0.405 Sum_probs=46.1
Q ss_pred CeEEEe-CCEEeccCCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEE
Q psy7044 1 MFDIFC-PRSQVRSEGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASG-KDEADVEITV 60 (68)
Q Consensus 1 ~~~W~k-~g~~l~~~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V 60 (68)
.+.|++ +|.++....++.+... ...+.|.|.+++.+|+|.|+|.|.|..| ..++++.|.|
T Consensus 30 ~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~ 92 (92)
T cd04977 30 DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI 92 (92)
T ss_pred eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence 378998 7777765556554433 3467899999999999999999999976 4577777754
No 59
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.52 E-value=8.2e-14 Score=70.57 Aligned_cols=57 Identities=25% Similarity=0.264 Sum_probs=46.2
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
.+.|+|+|..+....... .....|.|.+++.+|+|.|+|.|.|..|...+++.|.|.
T Consensus 32 ~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 88 (88)
T cd04968 32 QIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ 88 (88)
T ss_pred EEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEEC
Confidence 378999988776433322 123579999999999999999999999999999998873
No 60
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.51 E-value=1.3e-13 Score=70.24 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
.+.|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 90 (90)
T cd05858 54 MEVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTVL 90 (90)
T ss_pred eeEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEEC
Confidence 3689999999999999999999999999999999873
No 61
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.50 E-value=1.5e-13 Score=69.04 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=44.0
Q ss_pred eEEEeCCEEecc-CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEE
Q psy7044 2 FDIFCPRSQVRS-EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~-~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V 60 (68)
+.|+|+|.++.. ..++.+.. ...|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 29 i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V 86 (86)
T cd05724 29 VSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV 86 (86)
T ss_pred EEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence 789999999975 34554432 3479999999999999999999999976 44566543
No 62
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.49 E-value=2.2e-13 Score=67.72 Aligned_cols=54 Identities=19% Similarity=0.205 Sum_probs=39.4
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCC----CCCEEEEEEEEcCCcceeE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILR----KNSGVYRIKAENASGKDEA 54 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~----~d~G~Y~c~a~n~~g~~~~ 54 (68)
.++|+|||.++.......+........|.|.++.. +|+|.|+|.|.|..|...+
T Consensus 14 ~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 14 TFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred eEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 37899999998643322233333445788888754 7899999999999997644
No 63
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.49 E-value=3.5e-13 Score=65.93 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=41.8
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT 59 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~ 59 (68)
.+.|+|+|.++....++.+ ....|.|.+++ |+|.|+|.|.|..|..++++.|+
T Consensus 17 ~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 17 YVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred EEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence 3789999999875544322 23478999874 89999999999999999988763
No 64
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.48 E-value=8.1e-13 Score=68.21 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=46.3
Q ss_pred eEEEeCCEEeccC--CCEEEEEe----CCeEEEEEcCCCCC-CCEEEEEEEEcCCcceeEEEEE
Q psy7044 2 FDIFCPRSQVRSE--GNVEIVNV----PYNTKLSIVDILRK-NSGVYRIKAENASGKDEADVEI 58 (68)
Q Consensus 2 ~~W~k~g~~l~~~--~~~~~~~~----~~~~~l~I~~~~~~-d~G~Y~c~a~n~~g~~~~~~~l 58 (68)
+.|++++.+|... .++.+... ...+.|.|.+++.+ |.|.|.|.|.|..|.+.+.+.|
T Consensus 34 v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 34 IVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred eEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence 7899999998743 56766543 22468999999995 5999999999999999988876
No 65
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.48 E-value=4.9e-13 Score=66.46 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.+.|.|.+++.+|+|.|.|.|.|..|...+.+.|.|
T Consensus 46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 46 IGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81 (81)
T ss_pred ccEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence 457999999999999999999999999999999875
No 66
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.47 E-value=3e-13 Score=68.98 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
...|.|.+++.+|+|.|+|.|.|..|...+++.|.|.
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V~ 90 (90)
T cd04974 54 SEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTVL 90 (90)
T ss_pred cceEEEeccccccCcEEEEEeecccCcccCCEEEEeC
Confidence 3579999999999999999999999999999999874
No 67
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.45 E-value=7.4e-13 Score=65.43 Aligned_cols=53 Identities=11% Similarity=0.050 Sum_probs=40.2
Q ss_pred CeEEEeCCEEeccC-CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEE
Q psy7044 1 MFDIFCPRSQVRSE-GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVE 57 (68)
Q Consensus 1 ~~~W~k~g~~l~~~-~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~ 57 (68)
.+.|+|||.++... .++. . . ...|.|.+++.+|+|.|+|.|.|..........
T Consensus 14 ~v~W~kdg~~l~~~~~~~~--~-~-~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~ 67 (72)
T cd07702 14 EVIWLKDGLPAAEKCSRYH--V-D-GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLT 67 (72)
T ss_pred eEEEEECCEECCCCCcEEE--e-C-CCEEEECcCCHHHCEEEEEEEEccccceEeeEE
Confidence 37899999999754 2332 2 2 237999999999999999999999775544433
No 68
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.44 E-value=6.2e-13 Score=66.85 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=44.6
Q ss_pred eEEEeCCEEeccCCC-----EEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGN-----VEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~-----~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+.|.+++..+..... .........+.|.|.+++.+|+|.|+|.|.|..|..++++.|.|
T Consensus 20 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 20 FQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 789998876642211 10111123568999999999999999999999999999998876
No 69
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.44 E-value=1.6e-12 Score=64.77 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=37.9
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCC----CCCEEEEEEEEcCCcceeEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILR----KNSGVYRIKAENASGKDEAD 55 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~----~d~G~Y~c~a~n~~g~~~~~ 55 (68)
.++|+|||.++...+...+......+.|.|..+.. .|.|.|+|.|.|..|...+.
T Consensus 14 ~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 14 SFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred eEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 37899999998533322223223345677776654 37899999999999987553
No 70
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.43 E-value=2.5e-12 Score=66.15 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=40.9
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCC-CCCCEEEEEEEEcCCcceeE-EEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDIL-RKNSGVYRIKAENASGKDEA-DVEI 58 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~-~~d~G~Y~c~a~n~~g~~~~-~~~l 58 (68)
.+.|+|||.+|...........+ ..|.|.++. ..|+|.|+|.|.|..|...+ .+.|
T Consensus 35 ~i~W~k~g~~l~~~~~~~~~~~~--g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 35 TYRWLRNGTEIDTESDYRYSLID--GNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred EEEEEECCeECccCCCceEEeeC--CeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 37899999999754433333222 368898875 69999999999999998744 4443
No 71
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.43 E-value=2.7e-12 Score=63.89 Aligned_cols=53 Identities=17% Similarity=0.088 Sum_probs=38.2
Q ss_pred CeEEEeCCEEec--cCCCEEEEEeCCeEEEEEcCCC----CCCCEEEEEEEEcCCcceeEE
Q psy7044 1 MFDIFCPRSQVR--SEGNVEIVNVPYNTKLSIVDIL----RKNSGVYRIKAENASGKDEAD 55 (68)
Q Consensus 1 ~~~W~k~g~~l~--~~~~~~~~~~~~~~~l~I~~~~----~~d~G~Y~c~a~n~~g~~~~~ 55 (68)
.++|+|+|.++. ...++.+. .....|.|..+. .+|+|.|+|.|.|..|...+.
T Consensus 14 ~v~W~k~g~~~~~~~~~~~~~~--~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 14 TFQWTRNGKFFNVAKDPRVSMR--RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred EEEEEECCEEccCcCCCcEEEe--CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 378999999874 33455443 233578888764 247999999999999977544
No 72
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.41 E-value=5.1e-12 Score=62.90 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=47.2
Q ss_pred eEEEeCCEEeccCCCEEE-EEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEI-VNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~-~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+.|+|++.++........ ........|.|.+++.+|+|.|.|.|.|..|..+.++.|.|
T Consensus 26 v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v 85 (85)
T cd05729 26 ITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV 85 (85)
T ss_pred EEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence 689999999875444432 22234567999999999999999999999999998888764
No 73
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.41 E-value=4.3e-12 Score=64.78 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=40.2
Q ss_pred eEEEeCCEEeccC----CCEEEE-EeCCeEEEEE--cCCCCCCCEEEEEEEEcCCcc-eeEEEEEEE
Q psy7044 2 FDIFCPRSQVRSE----GNVEIV-NVPYNTKLSI--VDILRKNSGVYRIKAENASGK-DEADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~~----~~~~~~-~~~~~~~l~I--~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V 60 (68)
+.|+|+|.++... ....+. ..+....+.+ ..++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 33 i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 33 IQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence 7899999999751 111222 2222233333 334799999999999999998 577788776
No 74
>KOG3513|consensus
Probab=99.40 E-value=2.2e-12 Score=87.00 Aligned_cols=63 Identities=24% Similarity=0.229 Sum_probs=54.7
Q ss_pred CeEEEeCCEEeccCCC---EEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC-CcCC
Q psy7044 1 MFDIFCPRSQVRSEGN---VEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL-KENI 67 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~---~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~-p~~~ 67 (68)
.+.|+|||++|...++ +.+... .|.|.+++.+|+|.|+|.|+|.+|...+.+.|.|... |.++
T Consensus 362 ~v~WlkNg~pl~~~~r~~~~~i~~g----~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~ 428 (1051)
T KOG3513|consen 362 TVKWLKNGEPLEPAERDPRYKIDDG----TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFP 428 (1051)
T ss_pred ceEEeeCCeecCccCCCcceEEeCC----EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCC
Confidence 3789999999986666 665443 7999999999999999999999999999999999986 6654
No 75
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.38 E-value=1.3e-11 Score=63.45 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=39.6
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCC-CCCCEEEEEEEEcCCcceeE-EEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDIL-RKNSGVYRIKAENASGKDEA-DVEI 58 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~-~~d~G~Y~c~a~n~~g~~~~-~~~l 58 (68)
++|++||.+|............ ..|.|.+.. ..|+|.|+|.|.|.+|...+ .+.|
T Consensus 36 i~W~~~g~~l~~~~~~~~~~~~--g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 36 YRWKMNGTEIKFAPESRYTLVA--GNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred EEEEECCEECccCCCceEEEEC--CeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 7899999999743322222222 368888865 59999999999999997754 5554
No 76
>KOG3513|consensus
Probab=99.38 E-value=1.2e-12 Score=88.16 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=54.3
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN 66 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~ 66 (68)
+.|.|++..+..++|+.+... ..|.|.+++++|+|.|+|.|+|.+|+++.++.|.|.+++..
T Consensus 458 ~~W~k~~~~~~~~~r~~i~ed---GtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri 519 (1051)
T KOG3513|consen 458 VSWLKGGEKLLQSGRIRILED---GTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRI 519 (1051)
T ss_pred EEEEcCCcccccCceEEECCC---CcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceE
Confidence 789999997777888877443 37999999999999999999999999999999999987643
No 77
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.37 E-value=3.7e-12 Score=65.94 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=39.6
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCccee
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDE 53 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~ 53 (68)
.++|+||+.+|....+. ...-.+.+.|.|.++..+|+|.|+|.|.|.+|...
T Consensus 31 ~v~WYKd~~~l~~~~~~-~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 31 ELQWYKDSVLLDKDNEK-FYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred cEEEccCCEECcCCCcc-eEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 37899999999744322 12212345799999999999999999999987653
No 78
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.35 E-value=1e-11 Score=62.72 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=43.3
Q ss_pred eEEEeCCEEeccCC----CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc--ceeEEEEEEEEc
Q psy7044 2 FDIFCPRSQVRSEG----NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG--KDEADVEITVLI 62 (68)
Q Consensus 2 ~~W~k~g~~l~~~~----~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g--~~~~~~~l~V~~ 62 (68)
+.|+++|+...... +..+......+.|.|.+++..|+|.|.|.|.|..+ ....++.|.|.+
T Consensus 18 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~~ 84 (84)
T cd05861 18 FSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVHE 84 (84)
T ss_pred EEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEeC
Confidence 68998876432111 11111112257899999999999999999999987 667788888764
No 79
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.35 E-value=9.8e-12 Score=63.73 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=40.4
Q ss_pred CeEEEeCCEEeccCCC--EEEEEeCCeEEEEEcCC-----CCCCCEEEEEEEEcC-Ccce-eEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGN--VEIVNVPYNTKLSIVDI-----LRKNSGVYRIKAENA-SGKD-EADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~--~~~~~~~~~~~l~I~~~-----~~~d~G~Y~c~a~n~-~g~~-~~~~~l~V 60 (68)
.+.|+|||.++....+ ..+.. + ..|.|.++ ++.|.|.|+|.|.|. .|.. +..+.|+|
T Consensus 30 ~i~W~k~g~~l~~~~~~~~~~~~--~-~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 30 KIEWKKDGVLLNLVSDERRQQLP--N-GSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EEEEEECCeECccccCcceEEcc--C-CeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence 3789999999975433 33222 2 23555555 689999999999999 9977 55677664
No 80
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.34 E-value=2e-11 Score=63.50 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=47.7
Q ss_pred eEEEeCCEEecc--CCCEEEEEeC----CeEEEEEcCCCCCC-CEEEEEEEEcCCcceeEEEEE
Q psy7044 2 FDIFCPRSQVRS--EGNVEIVNVP----YNTKLSIVDILRKN-SGVYRIKAENASGKDEADVEI 58 (68)
Q Consensus 2 ~~W~k~g~~l~~--~~~~~~~~~~----~~~~l~I~~~~~~d-~G~Y~c~a~n~~g~~~~~~~l 58 (68)
+.|..++..|.. ..++.+.... ..+.|.|.++.+.| .|.|.|.|.|.+|.++..+.|
T Consensus 34 i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 34 IAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence 678888888764 3688877653 67899999998877 799999999999999998876
No 81
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.34 E-value=2.6e-11 Score=62.33 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=40.6
Q ss_pred CeEEEeCCEEecc-CCCEEEEEeCCeEEEEEcCCC-CCCCEEEEEEEEcCCcceeE-EEEE
Q psy7044 1 MFDIFCPRSQVRS-EGNVEIVNVPYNTKLSIVDIL-RKNSGVYRIKAENASGKDEA-DVEI 58 (68)
Q Consensus 1 ~~~W~k~g~~l~~-~~~~~~~~~~~~~~l~I~~~~-~~d~G~Y~c~a~n~~g~~~~-~~~l 58 (68)
.++|+|+|.++.. ..++.+. . ..|.|.++. ..|+|.|.|.|.|..|...+ .+.|
T Consensus 35 ~i~W~k~~~~i~~~~~~~~~~--~--g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 35 IYKWRKNNLDIDLTNDRYSMV--G--GNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEEEECCEEccCCCCeEEEE--C--CEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 3789999999863 3444332 2 479999985 58999999999999998744 4554
No 82
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.31 E-value=1.1e-11 Score=62.83 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=45.3
Q ss_pred eEEEeCCEEeccC---C--CEEE-EEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044 2 FDIFCPRSQVRSE---G--NVEI-VNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62 (68)
Q Consensus 2 ~~W~k~g~~l~~~---~--~~~~-~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~ 62 (68)
+.|...+..+... . +... ......+.|.|.+++..|+|.|+|.|.|..|...+.+.|.|.+
T Consensus 20 ~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~~ 86 (86)
T cd05862 20 FQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVHE 86 (86)
T ss_pred EEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccEEEEEeC
Confidence 5898877644211 1 1111 1123467899999999999999999999999999999999874
No 83
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.30 E-value=2e-11 Score=62.25 Aligned_cols=53 Identities=11% Similarity=0.013 Sum_probs=40.6
Q ss_pred eEEEeCCEEeccC-CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCC---cceeEEEEE
Q psy7044 2 FDIFCPRSQVRSE-GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENAS---GKDEADVEI 58 (68)
Q Consensus 2 ~~W~k~g~~l~~~-~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~---g~~~~~~~l 58 (68)
+.|+|||.+|..+ .++.+ .++ .|.|.+++.+|+|.|+|.|.+.. |..+.-+.+
T Consensus 27 i~W~~ng~~i~~~~~r~~~--~~~--~L~I~nv~~~DsG~Y~C~a~e~~~~~~~~~~~~~~ 83 (87)
T cd05873 27 VVWKFDGKVLTPESAKYLL--YRD--GLLIFNASEADAGRYQCLSVEKSKAKLFTQTVAKY 83 (87)
T ss_pred EEEEECCEECCCCCceEEE--ECC--cEEEeCCCHHHCEEEEEEEEecccCceeEeEEEee
Confidence 7899999999865 34443 222 58999999999999999999987 655554443
No 84
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.30 E-value=1.3e-11 Score=62.64 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=44.3
Q ss_pred CeEEEeCCEEeccCC--CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEEEc
Q psy7044 1 MFDIFCPRSQVRSEG--NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG-KDEADVEITVLI 62 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~--~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V~~ 62 (68)
.+.|+|++..+.... ..++.... ..|.|.+++.+|+|.|.|.|.|..+ ...++..|.|.+
T Consensus 26 ~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~~ 88 (89)
T cd04979 26 SVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVLE 88 (89)
T ss_pred eEEEEECCcccccccCcCceEEEcC--CCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEec
Confidence 368999998886432 12222222 2489999999999999999997766 557778888875
No 85
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.29 E-value=2.8e-11 Score=60.14 Aligned_cols=57 Identities=25% Similarity=0.379 Sum_probs=39.9
Q ss_pred CeEEEeCCEEec--------cCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEE
Q psy7044 1 MFDIFCPRSQVR--------SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITV 60 (68)
Q Consensus 1 ~~~W~k~g~~l~--------~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V 60 (68)
.+.|+|++.... ...++.+.. ...|.|.+++.+|+|.|.|.|.|..|.+ +..+.|.|
T Consensus 14 ~v~W~~~~~~~~~~~~~~~~~~~r~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 14 TIVWKHSKGRGHPQHTHTCCLAGRIQLLS---NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred EEEEEECCCccccccccccccCCCEEEec---CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 378999743211 223444322 2479999999999999999999999977 55555543
No 86
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.29 E-value=3.8e-11 Score=61.13 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=37.4
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCC-CCCEEEEEEEEcCCcceeE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILR-KNSGVYRIKAENASGKDEA 54 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~-~d~G~Y~c~a~n~~g~~~~ 54 (68)
++|+|+|.++............ ..|.|.++.. .|+|.|+|.|.|..|...+
T Consensus 36 i~W~k~~~~l~~~~~~~~~~~~--~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 36 YRWLMNGTEIDDEPDSRYSLVG--GNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred EEEEECCEECCCCCCCCEEEEC--CEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 7899999999533222222222 3688988875 8999999999999997644
No 87
>smart00409 IG Immunoglobulin.
Probab=99.27 E-value=1.8e-10 Score=56.19 Aligned_cols=59 Identities=22% Similarity=0.372 Sum_probs=50.4
Q ss_pred eEEEeC-CEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCP-RSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~-g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+.|+++ +.++....++.+........|.|.+++..|+|.|.|.+.|..+.....+.|.|
T Consensus 26 ~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00409 26 VTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred EEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 679998 88887667777766655678999999999999999999999998887788776
No 88
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.27 E-value=1.8e-10 Score=56.19 Aligned_cols=59 Identities=22% Similarity=0.372 Sum_probs=50.4
Q ss_pred eEEEeC-CEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCP-RSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~-g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+.|+++ +.++....++.+........|.|.+++..|+|.|.|.+.|..+.....+.|.|
T Consensus 26 ~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00410 26 VTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred EEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 679998 88887667777766655678999999999999999999999998887788776
No 89
>KOG4194|consensus
Probab=99.23 E-value=2e-11 Score=79.39 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=52.6
Q ss_pred CeEEEeCCEE-ec--cCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044 1 MFDIFCPRSQ-VR--SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI 67 (68)
Q Consensus 1 ~~~W~k~g~~-l~--~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~ 67 (68)
.+.|.|+|-+ .+ ...|.++...++ .+.|.|++.+|.|.|+|.|.|.+|+.++.+.|+|.+.|.++
T Consensus 643 eIawqkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~ 710 (873)
T KOG4194|consen 643 EIAWQKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFS 710 (873)
T ss_pred ceeehhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEecCCccc
Confidence 3789998764 33 334445443333 68999999999999999999999999999999999999875
No 90
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.21 E-value=5.3e-11 Score=59.83 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=41.5
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEI 58 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l 58 (68)
+.|++++..+.. +. ......|.|.+++.+|+|.|.|.|.|..|..++.+.|
T Consensus 34 i~W~~~~~~~~~--~~----~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 34 LVWTRVGGGLPS--RA----MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred EEEEECCCcCCC--cc----cccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 789999977642 21 1123479999999999999999999999999998876
No 91
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.18 E-value=1.2e-10 Score=58.54 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=36.5
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeE-EEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEA-DVEI 58 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~-~~~l 58 (68)
+.|+|||.++.. +. ....+.|.|.++ .|+|.|.|.|.|.+|...+ .+.|
T Consensus 31 I~W~k~g~~l~~--~~----~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 31 ILWWQGGSPLGD--PP----APSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred EEEEECCEECCC--CC----CCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence 789999999974 11 122357999887 4789999999999997654 4443
No 92
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.16 E-value=1.9e-10 Score=60.34 Aligned_cols=57 Identities=12% Similarity=0.111 Sum_probs=43.7
Q ss_pred eEEEeCCEEeccCCC-----EEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGN-----VEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~-----~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+.|+|+|.++..... .++... ...|-|.+++.+|+|.|+|++.|...-....+.|+|
T Consensus 43 v~WyK~~~~~~~~~~~~~~~~Ri~~~--~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 43 LMWYKSSGDGEEPIEIIFDGVRMSKE--EDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEEEECCCCCCCCCcccccceeEEEe--CCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEEC
Confidence 689999876654331 123222 347999999999999999999999988888887765
No 93
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.14 E-value=3.1e-10 Score=66.51 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=40.4
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
++|+|||++|..+.++.+. .+...|.|.+++.+|+|.|+|.|....+..
T Consensus 166 I~WyKng~~l~~~~r~~~~--~~~~~L~I~~V~~~DsG~YtC~a~~~~~g~ 214 (227)
T PHA02826 166 LTWYKNGNIVLYTDRIQLR--NNNSTLVIKSATHDDSGIYTCNLRFNKNSN 214 (227)
T ss_pred EEEEECCEECCCCCCEEEe--CCCCEEEECcCCHHhCEEEEEEEEEeECCE
Confidence 7899999999866776554 344589999999999999999999876433
No 94
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.12 E-value=3.2e-10 Score=58.09 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=32.5
Q ss_pred EEEEEcCCCCCCCEEEEEEEE-cCCcceeEEEEEEEEc
Q psy7044 26 TKLSIVDILRKNSGVYRIKAE-NASGKDEADVEITVLI 62 (68)
Q Consensus 26 ~~l~I~~~~~~d~G~Y~c~a~-n~~g~~~~~~~l~V~~ 62 (68)
..|.|.+++++|+|.|.|.|. |..+...+.++|.|.+
T Consensus 53 ~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~~ 90 (91)
T cd05871 53 RGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVIE 90 (91)
T ss_pred CeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEec
Confidence 359999999999999999998 6777778889999875
No 95
>KOG4221|consensus
Probab=99.11 E-value=3.7e-10 Score=77.29 Aligned_cols=66 Identities=23% Similarity=0.253 Sum_probs=52.8
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCCC
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENIN 68 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~~ 68 (68)
.|.|++||++|.-.. +++... +.+.|.|.+++..|+|.|+|+|.|......++++|.|..+|.+++
T Consensus 268 ~v~Wlrng~~i~~ds-~rivl~-g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~ 333 (1381)
T KOG4221|consen 268 SVKWLRNGEKISVDS-YRIVLV-GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTK 333 (1381)
T ss_pred ceEEeeCCeeeeecc-eEEEEe-cccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCC
Confidence 378999999998433 444433 345799999999999999999999777777788888999898764
No 96
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.10 E-value=1.6e-10 Score=57.70 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=30.1
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA 48 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~ 48 (68)
+.|+|||.+|.. ....|.|.++ ++|+|.|+|.|.|.
T Consensus 33 ~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 33 TQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred EEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 689999998842 1246899999 99999999999986
No 97
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.10 E-value=2.2e-10 Score=59.40 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=37.5
Q ss_pred eEEEeCCEEe--ccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 2 FDIFCPRSQV--RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 2 ~~W~k~g~~l--~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
+.|+|++.++ ....+..+.. ....|.|.+++.+|+|.|.|.|+|.+...
T Consensus 36 ~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 36 YRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred EEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 6899999875 3334433322 23479999999999999999999998765
No 98
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.09 E-value=2.6e-10 Score=57.48 Aligned_cols=50 Identities=22% Similarity=0.170 Sum_probs=38.1
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEIT 59 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~ 59 (68)
+.|+|+|..+.. ....+.|.|.+++.+|+|.|.|.|.|..|.. +..+.|.
T Consensus 32 ~~w~k~g~~~~~--------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~ 82 (83)
T cd05753 32 VTYYRDGKAKKY--------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSIT 82 (83)
T ss_pred EEEEECCeEccc--------cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEE
Confidence 689999987752 1123579999999999999999999999954 3334443
No 99
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.09 E-value=1.5e-09 Score=55.94 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=40.5
Q ss_pred eEEEeC--------CEEeccCCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCP--------RSQVRSEGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~--------g~~l~~~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+.|++. +......+|+.+... .....|.|.+++.+|+|.|.|.+.+..+. ...+.|.|
T Consensus 29 v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~-~~~~~l~v 95 (95)
T cd07701 29 LQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPVK-TSKAYLTV 95 (95)
T ss_pred EEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecCc-cEEEEEEC
Confidence 679763 333333467665332 34578999999999999999999985443 67777664
No 100
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.08 E-value=5.8e-10 Score=51.81 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=35.9
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG 50 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g 50 (68)
+.|++++..+. . ... .......|.|.+++..|+|.|+|.+.|..|
T Consensus 19 v~W~~~~~~~~-~-~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 19 ITWLKDGKPLP-E-SNR--LSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred EEEEECCEECC-C-CCE--EecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 68999999887 2 222 233456899999999999999999999876
No 101
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.07 E-value=1.4e-09 Score=55.23 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=42.3
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
.+.|++||.++..++++.....+ |.|.+++.+|+|.|.|.+. +.|..+..+.+.+.
T Consensus 26 ~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~l~ 81 (85)
T cd05872 26 SPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQQLVASYSLN 81 (85)
T ss_pred cEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCeEEEEEEEEE
Confidence 37899999999876666544322 7799999999999999976 77877665554443
No 102
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.07 E-value=1.5e-09 Score=66.28 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=43.7
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL 63 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~ 63 (68)
+.|+|+|.... +. . ..+..+.|.|.+++.+|+|.|+|.|.|..|...+++.|.|...
T Consensus 63 i~W~K~g~~~~---~~-~-~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~ 119 (326)
T PHA02785 63 ILWEKRGADND---RI-I-PIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSV 119 (326)
T ss_pred EEEEECCCccc---eE-E-EccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEec
Confidence 78999985422 11 1 1223345779999999999999999999998888898888754
No 103
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=99.03 E-value=3.8e-09 Score=54.39 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=33.7
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+...|.|.+++.+|+|.|.|.+.|..+..++.+.|.|
T Consensus 63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 4578999999999999999999999998888888876
No 104
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.02 E-value=2.5e-09 Score=62.73 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK 64 (68)
Q Consensus 25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p 64 (68)
...|.|.+++++|+|.|+|.|.|..|..+..+.|.|...+
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~ 136 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGT 136 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCC
Confidence 3579999999999999999999999998999999886543
No 105
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.95 E-value=1.1e-08 Score=53.47 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=47.2
Q ss_pred eEEEeCCEEeccCCC--EEEEE---eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGN--VEIVN---VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~--~~~~~---~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
+.|.+++.++..... +..+. ..+.+.|.+..++.+|+|.|+|.|.|+.+..+.++.|.|.
T Consensus 36 ~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 36 QQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred eEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence 689999998753322 22221 1245889999999999999999999999999999999874
No 106
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.93 E-value=2.4e-08 Score=51.57 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=39.5
Q ss_pred eEEEeCCEEe--------ccCCCEEEEEeC-CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCPRSQV--------RSEGNVEIVNVP-YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l--------~~~~~~~~~~~~-~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+.|+|++..+ ....++.+.... ....|.|.+++.+|+|.|+|.+.. .-...+.+.|.|
T Consensus 29 v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t-~~~~~~~~~~~v 95 (95)
T cd05882 29 LQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT-MPVRTAKATVTV 95 (95)
T ss_pred EEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-eccccEEEEEEC
Confidence 7898887543 123455543333 357899999999999999999988 224455555543
No 107
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.92 E-value=1.8e-08 Score=51.51 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=33.3
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEc-CCcceeEEEEEEEE
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAEN-ASGKDEADVEITVL 61 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n-~~g~~~~~~~l~V~ 61 (68)
+...|.|.+++.+|+|.|.|.+.+ +.|..+..+.|.|+
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTVL 98 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEeC
Confidence 456899999999999999999875 77889999998874
No 108
>KOG4222|consensus
Probab=98.92 E-value=2.2e-09 Score=73.25 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=50.5
Q ss_pred eEEEeCCEEec--cCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcCCcCC
Q psy7044 2 FDIFCPRSQVR--SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLILKENI 67 (68)
Q Consensus 2 ~~W~k~g~~l~--~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~p~~~ 67 (68)
+.|.|+|+++. ..+++.+.. ...|.|.++..+|.|.|.|+|.|.+|.+ +..++|.|.++|.+.
T Consensus 164 vSw~Kdg~pl~~~~~~~~~lis---gG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~ 229 (1281)
T KOG4222|consen 164 VSWVKDGKPLDHYDVPIIALIS---GGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFW 229 (1281)
T ss_pred ceeecCCCccccccceeEEEec---CCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccc
Confidence 68999999997 323333222 2369999999999999999999999976 567999999999764
No 109
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.91 E-value=1.3e-08 Score=62.27 Aligned_cols=52 Identities=10% Similarity=0.135 Sum_probs=38.2
Q ss_pred eEEEeCCEEeccC-----CCEEEEEeC--------CeEEEEEcCCCCCCCEEEEEEEEcCCccee
Q psy7044 2 FDIFCPRSQVRSE-----GNVEIVNVP--------YNTKLSIVDILRKNSGVYRIKAENASGKDE 53 (68)
Q Consensus 2 ~~W~k~g~~l~~~-----~~~~~~~~~--------~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~ 53 (68)
+.|+|||.+|... .++...... ....|.|.+++.+|+|.|+|.|.|..|...
T Consensus 255 v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 255 VFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred EEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 6899999998642 133322211 135799999999999999999999996543
No 110
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.91 E-value=1.7e-08 Score=51.63 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=33.0
Q ss_pred CCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 15 GNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 15 ~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.|+.+... .....|.|.+++.+|+|.|.|.+.+... .++.+.|+|
T Consensus 50 ~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~v 95 (95)
T cd05717 50 NRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV-QTAKATVTV 95 (95)
T ss_pred CcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC-ceEEEEEEC
Confidence 46655322 2346799999999999999999998764 466666654
No 111
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.90 E-value=1.8e-08 Score=50.22 Aligned_cols=55 Identities=11% Similarity=0.066 Sum_probs=37.8
Q ss_pred eEEEeCCEEeccCCC-EEEEEeC----CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEE
Q psy7044 2 FDIFCPRSQVRSEGN-VEIVNVP----YNTKLSIVDILRKNSGVYRIKAENASGKDEADV 56 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~-~~~~~~~----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~ 56 (68)
++|+++|+++..... ......+ ..+.|.|......|.|.|+|.|.|.........
T Consensus 17 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~ 76 (82)
T cd05759 17 IIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKET 76 (82)
T ss_pred EEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEE
Confidence 789999999874321 1111111 135788988888899999999999987554333
No 112
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.89 E-value=6.5e-09 Score=52.30 Aligned_cols=51 Identities=6% Similarity=0.057 Sum_probs=37.6
Q ss_pred CeEEEeCCEEeccCCCEEEEEe---CCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNV---PYNTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~---~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
.+.|||||++|..... ..... ...+.|.|.....+|.+.|+|.|.|+++..
T Consensus 16 ~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 16 TLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred eEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 3789999999974221 00000 123469999999999999999999999965
No 113
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.88 E-value=8.9e-09 Score=50.30 Aligned_cols=49 Identities=31% Similarity=0.454 Sum_probs=37.7
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG-KDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V 60 (68)
+.|++++.++..+.. . |.|.+++..|+|.|+|.|.|..+ ..+..+.|.|
T Consensus 31 ~~w~~~~~~~~~~~~--------~--~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 31 VQWYKNGSPINSSQN--------G--LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEEEETTEEEEEESS--------E--EEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeeeeeeeeeeeeee--------e--eeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 689999888763222 1 77899999999999999999776 4466677765
No 114
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.86 E-value=8.2e-09 Score=53.30 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCCCCEEEEEEEEcCCccee
Q psy7044 23 PYNTKLSIVDILRKNSGVYRIKAENASGKDE 53 (68)
Q Consensus 23 ~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~ 53 (68)
.+...|.|.+++.+|+|.|.|.+.|..+..+
T Consensus 62 ~g~~~L~I~~l~~sDsgtY~C~v~~~~~~~~ 92 (94)
T cd07690 62 QGSFPLIIKNLKIEDSDTYICEVEDKKEEVE 92 (94)
T ss_pred CCeEEEEECCCCHHHCEEEEEEECCccceEE
Confidence 3456799999999999999999999988654
No 115
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.81 E-value=6.1e-09 Score=49.45 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=30.9
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCe--EEEEEcCCCCCCCEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYN--TKLSIVDILRKNSGVYRIKA 45 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~--~~l~I~~~~~~d~G~Y~c~a 45 (68)
+.|++++..+.............. ..|.|.+++.+|+|.|+|.|
T Consensus 19 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 19 VTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred EEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 689999987764333322222221 13999999999999999986
No 116
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.75 E-value=2.9e-08 Score=53.95 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=36.4
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044 27 KLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE 65 (68)
Q Consensus 27 ~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~ 65 (68)
+|.|.+++..|+|.|.|.+.|..|..+..+.|.|..+|.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~ 40 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPR 40 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCc
Confidence 689999999999999999999999999999999998775
No 117
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.73 E-value=2.3e-07 Score=47.88 Aligned_cols=40 Identities=15% Similarity=0.360 Sum_probs=33.2
Q ss_pred eCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEE
Q psy7044 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVL 61 (68)
Q Consensus 22 ~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~ 61 (68)
......|.|.+++.+|+|.|.|.+.+..|.. ...+.|.|.
T Consensus 57 ~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~vy 97 (97)
T cd05775 57 SQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHIY 97 (97)
T ss_pred cCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEeC
Confidence 3445789999999999999999999998854 777777763
No 118
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.72 E-value=6e-08 Score=50.48 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=37.7
Q ss_pred CCEEEEE-eCCeEEEEEcCCCCCCCEEEEEEEEc-CCcceeEEEEEEEE
Q psy7044 15 GNVEIVN-VPYNTKLSIVDILRKNSGVYRIKAEN-ASGKDEADVEITVL 61 (68)
Q Consensus 15 ~~~~~~~-~~~~~~l~I~~~~~~d~G~Y~c~a~n-~~g~~~~~~~l~V~ 61 (68)
+|+.+.. ..+..+|.|.+++.+|.|.|.|.+.| +.|..++.+.|.|.
T Consensus 51 ~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 51 ERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTVY 99 (99)
T ss_pred CcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence 4554432 12346899999999999999999999 88889999999884
No 119
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.68 E-value=2.4e-07 Score=48.01 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=37.3
Q ss_pred CCEEEE-EeCCeEEEEEcCCCCCCCEEEEEEE-EcCCcceeEEEEEEEE
Q psy7044 15 GNVEIV-NVPYNTKLSIVDILRKNSGVYRIKA-ENASGKDEADVEITVL 61 (68)
Q Consensus 15 ~~~~~~-~~~~~~~l~I~~~~~~d~G~Y~c~a-~n~~g~~~~~~~l~V~ 61 (68)
+|+.+. .......|.|.+++.+|.|.|.|.+ ..+.|..+++..|.|+
T Consensus 48 ~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 48 GRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTVL 96 (96)
T ss_pred CcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEEC
Confidence 355543 1233568999999999999999996 6889999999999874
No 120
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.67 E-value=2e-07 Score=48.99 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=29.6
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEE
Q psy7044 26 TKLSIVDILRKNSGVYRIKAENASG-KDEADVEITV 60 (68)
Q Consensus 26 ~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V 60 (68)
.+|.|+++++.|+|.|+|.+.|..+ ...+...|.|
T Consensus 70 gSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 70 GSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred CcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence 3799999999999999999999884 6677777654
No 121
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.67 E-value=2e-07 Score=48.33 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=36.9
Q ss_pred CCEEEEE--eCCeEEEEEcCCCCCCCEEEEEEEEc-CCcceeEEEEEEEE
Q psy7044 15 GNVEIVN--VPYNTKLSIVDILRKNSGVYRIKAEN-ASGKDEADVEITVL 61 (68)
Q Consensus 15 ~~~~~~~--~~~~~~l~I~~~~~~d~G~Y~c~a~n-~~g~~~~~~~l~V~ 61 (68)
+|+++.. ......|.|.+++.+|+|.|.|.+.+ +.|..++.+.|.|.
T Consensus 51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V~ 100 (100)
T cd05888 51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTVW 100 (100)
T ss_pred CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEeC
Confidence 3555542 22356799999999999999999998 77877888888873
No 122
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.65 E-value=1.3e-07 Score=49.13 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=35.5
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~ 62 (68)
+...|.|.+++.+|+|.|.|.+.|..+..+..+.|.|.+
T Consensus 66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEE
Confidence 567899999999999999999999988889999999875
No 123
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.61 E-value=9.3e-08 Score=49.50 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=36.1
Q ss_pred eEEEeCCEE-eccCCCEEEEEeCCeEEEEEcCCCCCCCE-EEEEEEEcCCcce
Q psy7044 2 FDIFCPRSQ-VRSEGNVEIVNVPYNTKLSIVDILRKNSG-VYRIKAENASGKD 52 (68)
Q Consensus 2 ~~W~k~g~~-l~~~~~~~~~~~~~~~~l~I~~~~~~d~G-~Y~c~a~n~~g~~ 52 (68)
+.|++++.. +....|+.+. . ...|.|.+++..|+| .|.|.|.|.+...
T Consensus 36 i~W~~~~~~~i~~~~Ri~~~--~-~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 36 IYWMNSDLLHITQDERVSMG--Q-NGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred EEEECCCCccccccccEEEC--C-CceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 689988765 3444555432 2 257999999999999 8999999998644
No 124
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.60 E-value=2.4e-07 Score=48.11 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=35.4
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~ 62 (68)
+...|.|.+++.+|+|.|.|.+.+..+..+..+.|.|.+
T Consensus 66 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 66 LDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred CcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEE
Confidence 356899999999999999999999999999999998865
No 125
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.60 E-value=3.4e-07 Score=46.21 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=28.5
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEE
Q psy7044 26 TKLSIVDILRKNSGVYRIKAENASG-KDEADVEITV 60 (68)
Q Consensus 26 ~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V 60 (68)
..|.|.+++.+|+|.|.|.+....| .....+.|.|
T Consensus 57 ~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~v 92 (92)
T cd05741 57 GSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLRV 92 (92)
T ss_pred ceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEEC
Confidence 6799999999999999999998886 3455555543
No 126
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.56 E-value=1e-06 Score=44.51 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=43.1
Q ss_pred CeEEEeCCEEeccCCCEEEEEeC---CeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVP---YNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI 62 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~---~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~ 62 (68)
.|.|+|+|+++............ ..+.|.+.....+|...|+|.|.|++-.. +.+..|.|..
T Consensus 16 ~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 16 TIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 37899999999753221111112 24679998888889999999999988743 5556666653
No 127
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.55 E-value=1.5e-06 Score=45.80 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~ 62 (68)
+...|.|.+++.+|+|.|.|.+.......+..+.|.|.+
T Consensus 70 ~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 70 GDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred CcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 457899999999999999999999888889999998875
No 128
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.55 E-value=1.3e-06 Score=46.62 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEE
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEIT 59 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~ 59 (68)
+..+|.|.+++.+|.|.|+|.+.|.-+.. ...+.|.
T Consensus 78 ~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~ 115 (116)
T cd05879 78 KDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY 115 (116)
T ss_pred CeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence 45689999999999999999999998844 3445544
No 129
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.51 E-value=6.9e-07 Score=47.44 Aligned_cols=47 Identities=26% Similarity=0.426 Sum_probs=38.5
Q ss_pred CEEEEE---eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044 16 NVEIVN---VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62 (68)
Q Consensus 16 ~~~~~~---~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~ 62 (68)
|+.+.. ..+...|.|.+++.+|+|.|.|.+.+.....+....|.|.+
T Consensus 61 R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 61 RVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred eEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 555544 33567899999999999999999998888888888888764
No 130
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.51 E-value=4.2e-06 Score=44.83 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=35.9
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~ 62 (68)
+..+|.|.+++.+|+|.|.|.+.+.....+..+.|.|.+
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 567899999999999999999999999999999998875
No 131
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.51 E-value=1.5e-06 Score=46.08 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=34.6
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~ 62 (68)
+...|.|.+++.+|+|.|.|.+.......+..+.|.|.+
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 467899999999999999999999777788899998864
No 132
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.44 E-value=1.9e-06 Score=44.75 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=28.7
Q ss_pred CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044 15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASG 50 (68)
Q Consensus 15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g 50 (68)
.|+.+... .....|.|.+++.+|+|.|.|.+.+..+
T Consensus 57 ~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~ 94 (109)
T cd04983 57 GRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSESGG 94 (109)
T ss_pred CcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 56655443 3567899999999999999999998754
No 133
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.43 E-value=1.1e-06 Score=45.25 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=29.4
Q ss_pred CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044 15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENASG 50 (68)
Q Consensus 15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~g 50 (68)
.|+.+.... +...|.|.+++.+|+|.|.|.+.+..+
T Consensus 54 ~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 54 GRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 455555444 567899999999999999999998886
No 134
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.41 E-value=8.9e-07 Score=45.08 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=32.2
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA 48 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~ 48 (68)
+.|+|+|...... . .........|.|.+++++|+|.|+|...|.
T Consensus 32 f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 32 YRLYREGSTFAVK-K--PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred EEEEECCCCcccc-c--cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 5688888764421 1 112233567999999999999999999987
No 135
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.41 E-value=7.3e-06 Score=42.39 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=28.8
Q ss_pred cCCCEEEEE-eCCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044 13 SEGNVEIVN-VPYNTKLSIVDILRKNSGVYRIKAENAS 49 (68)
Q Consensus 13 ~~~~~~~~~-~~~~~~l~I~~~~~~d~G~Y~c~a~n~~ 49 (68)
..+|+.+.. ......|.|.+++.+|.|.|.|.+....
T Consensus 48 ~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p 85 (95)
T cd05881 48 KDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTDP 85 (95)
T ss_pred CCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEccc
Confidence 457887665 3345679999999999999999987533
No 136
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.36 E-value=4.5e-06 Score=38.37 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=36.3
Q ss_pred CeEEEeCCEEeccCCC----EEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044 1 MFDIFCPRSQVRSEGN----VEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK 51 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~----~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~ 51 (68)
.+.|++++........ ...........|.|.+++..|.|.|.|.+.+..+.
T Consensus 14 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 68 (74)
T cd00096 14 TITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT 68 (74)
T ss_pred cEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcCc
Confidence 3689999887753321 11112234567999999999999999999988743
No 137
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.36 E-value=7.4e-07 Score=42.72 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044 23 PYNTKLSIVDILRKNSGVYRIKAEN 47 (68)
Q Consensus 23 ~~~~~l~I~~~~~~d~G~Y~c~a~n 47 (68)
...+.|.|.++..+|.|.|+|.|+|
T Consensus 51 ~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 51 SSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred ceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3456899999999999999999988
No 138
>KOG4194|consensus
Probab=98.29 E-value=1.6e-06 Score=57.24 Aligned_cols=63 Identities=14% Similarity=0.215 Sum_probs=51.9
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE 65 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~ 65 (68)
+..|+|+++||--.++... .++...|.+.+....|+|.|+|...|..|.....+.+.|+.++.
T Consensus 738 r~~W~k~d~pil~t~rh~f--~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~ 800 (873)
T KOG4194|consen 738 RLEWFKEDKPILITERHTF--PDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKK 800 (873)
T ss_pred cccccCCCCceEEeecccC--CCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCC
Confidence 4679999999875565443 46667899999999999999999999999998888777776654
No 139
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.29 E-value=1e-05 Score=40.44 Aligned_cols=51 Identities=6% Similarity=0.015 Sum_probs=34.2
Q ss_pred CeEEEeCCEEeccCCCEEEEE-eC----CeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVN-VP----YNTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~-~~----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
.+.|+++|++|.... ..... .+ -.+.|.+......+.+.|+|.|.|+....
T Consensus 16 ~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 16 TIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred eEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 378999999997432 11111 11 12356676666667789999999999864
No 140
>PHA02633 hypothetical protein; Provisional
Probab=98.27 E-value=5.4e-06 Score=39.73 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=36.6
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK 64 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p 64 (68)
...-|-|-++..+|+|.|.|...|+.-....++.|.|..++
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 44468899999999999999999999999999999998765
No 141
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.27 E-value=1e-05 Score=46.38 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=36.5
Q ss_pred CCEE-EEEeCCeEEEEEcCCCCCCCEEEEEEEE-cCCc-ceeEEEEEEEEc
Q psy7044 15 GNVE-IVNVPYNTKLSIVDILRKNSGVYRIKAE-NASG-KDEADVEITVLI 62 (68)
Q Consensus 15 ~~~~-~~~~~~~~~l~I~~~~~~d~G~Y~c~a~-n~~g-~~~~~~~l~V~~ 62 (68)
+|++ +......+.|.|++++++|+|.|.|... -+.| ..+.++-|+|..
T Consensus 73 ~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 73 NKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred CeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEc
Confidence 3555 3444456789999999999999999865 5567 778888888765
No 142
>KOG4221|consensus
Probab=98.24 E-value=4.5e-06 Score=58.09 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=48.3
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcCC
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLILK 64 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~p 64 (68)
+.|.||+++|..+.++.+.. ...|.|.+++..|.|.|+|.++|..-+. +..++|+|...|
T Consensus 172 i~w~kn~~pl~~~~r~i~lp---sG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~ 232 (1381)
T KOG4221|consen 172 IMWLKNDQPLPLDSRVIVLP---SGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDP 232 (1381)
T ss_pred eEEecccccccCCCcEEEcC---CCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCc
Confidence 68999999998766665433 2379999999999999999999988865 556888887444
No 143
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.23 E-value=2.1e-05 Score=39.52 Aligned_cols=51 Identities=4% Similarity=-0.041 Sum_probs=35.3
Q ss_pred CeEEEeCCEEeccCCCEEEEEe-CC-----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNV-PY-----NTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~-~~-----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
.++|++||++|..... .+... ++ .+.|.+......+...|+|.|.++....
T Consensus 16 ~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 16 NIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 3789999999874332 22222 21 2456666666778899999999998755
No 144
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=98.20 E-value=1.1e-05 Score=42.50 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI 62 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~ 62 (68)
..-.|.|+.++..|+|.|.+.+.|..|.. ...+.|.|+|
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVFD 108 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVFD 108 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE-
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEeeC
Confidence 33479999999999999999999999966 6678888875
No 145
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.18 E-value=6.2e-06 Score=42.32 Aligned_cols=38 Identities=18% Similarity=0.340 Sum_probs=32.9
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEE-cCCcceeEEEEEEEE
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAE-NASGKDEADVEITVL 61 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~-n~~g~~~~~~~l~V~ 61 (68)
....|.|.+++.+|+|.|.|... .+.|..+..+-|+|.
T Consensus 59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v~ 97 (97)
T cd05846 59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTVY 97 (97)
T ss_pred CccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEEC
Confidence 45679999999999999999976 778888888888874
No 146
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.16 E-value=6.7e-06 Score=41.62 Aligned_cols=50 Identities=10% Similarity=0.038 Sum_probs=35.0
Q ss_pred eEEEeCCEEeccCCC-E-EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044 2 FDIFCPRSQVRSEGN-V-EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGK 51 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~-~-~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~ 51 (68)
++|++||.++..... . .....++ .+.|.|......|.|.|+|.|.+....
T Consensus 32 i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 32 VTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred EEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 789999999975432 1 1112222 235777777777999999999998875
No 147
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.16 E-value=1.3e-05 Score=41.60 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=26.8
Q ss_pred CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044 15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA 48 (68)
Q Consensus 15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~ 48 (68)
.++.+........|.|.+++.+|+|.|.|.+.+.
T Consensus 60 ~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 60 SRFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred CCEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence 3565544445668999999999999999998764
No 148
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.14 E-value=7e-06 Score=43.52 Aligned_cols=36 Identities=11% Similarity=0.328 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEcCCccee--EEEEEE
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAENASGKDE--ADVEIT 59 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~--~~~~l~ 59 (68)
+...|.|.+++.+|+|.|.|.+.|..+... ..+.|.
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 77 RDASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred CceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 356799999999999999999999887532 345544
No 149
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.13 E-value=9.6e-06 Score=42.37 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=27.4
Q ss_pred CCEEEEEeC-CeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044 15 GNVEIVNVP-YNTKLSIVDILRKNSGVYRIKAENASG 50 (68)
Q Consensus 15 ~~~~~~~~~-~~~~l~I~~~~~~d~G~Y~c~a~n~~g 50 (68)
+++.+.... ....|.|.+++.+|+|.|.|.+.+..+
T Consensus 60 ~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~~~ 96 (110)
T cd05899 60 DRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSLGGG 96 (110)
T ss_pred CceEEECcCCCccEEEECCCChhhCEEEEEEeeCCCC
Confidence 455544332 457899999999999999999987643
No 150
>KOG4222|consensus
Probab=98.13 E-value=4e-06 Score=58.04 Aligned_cols=63 Identities=21% Similarity=0.153 Sum_probs=52.5
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI 67 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~ 67 (68)
+.|.|++-.+. -.++.+... ...|.|.+++..|.|.|.|.|+|.+|.-++.+.|+|..+|++.
T Consensus 257 Vrwkk~~~~~P-~~ry~i~~d--~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~ 319 (1281)
T KOG4222|consen 257 VRWKKDDPSLP-RSRYSILDD--TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFG 319 (1281)
T ss_pred eeeeccCCCCC-ccceeeeec--cccccccccCCCcccceeeeccccccccccccceEEecCcccc
Confidence 56888777766 345665443 3479999999999999999999999999999999999999874
No 151
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.09 E-value=2.9e-05 Score=39.85 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=33.3
Q ss_pred CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcC-CcceeEEEEEEE
Q psy7044 15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENA-SGKDEADVEITV 60 (68)
Q Consensus 15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~-~g~~~~~~~l~V 60 (68)
.++.+... .....|.|.+++.+|+|.|.|.+... .......+.|.|
T Consensus 66 ~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 66 GRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp TTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred eeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 34444443 23678999999999999999999987 334456666665
No 152
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.08 E-value=3.5e-05 Score=38.76 Aligned_cols=51 Identities=6% Similarity=0.015 Sum_probs=35.3
Q ss_pred eEEEeCCEEeccCCCEEEEEeC-----CeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVP-----YNTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~-----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
++|+|||+++............ ..+.|.+......+...|+|.|.|+....
T Consensus 17 itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~ 72 (83)
T cd05884 17 IRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNA 72 (83)
T ss_pred EEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCC
Confidence 7899999998643222111111 13468887777788999999999988764
No 153
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.05 E-value=1.6e-05 Score=42.01 Aligned_cols=35 Identities=11% Similarity=0.317 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCCCCEEEEEEEEcCCccee--EEEEEE
Q psy7044 25 NTKLSIVDILRKNSGVYRIKAENASGKDE--ADVEIT 59 (68)
Q Consensus 25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~--~~~~l~ 59 (68)
...|.|.+++.+|+|.|.|.+.|.-+... ..+.|.
T Consensus 79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 115 (116)
T cd05715 79 DASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR 115 (116)
T ss_pred eeEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence 46799999999999999999998877432 345554
No 154
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.04 E-value=2.1e-05 Score=41.33 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=27.4
Q ss_pred CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044 15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENA 48 (68)
Q Consensus 15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~ 48 (68)
.|+.+.... ....|.|.+++.+|+|.|.|.+...
T Consensus 64 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 64 NKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWES 99 (116)
T ss_pred CCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEecC
Confidence 466666555 5678999999999999999988643
No 155
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.95 E-value=5.2e-05 Score=38.82 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=28.3
Q ss_pred CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044 15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA 48 (68)
Q Consensus 15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~ 48 (68)
+++.+........|.|.+++.+|+|.|-|.+.+.
T Consensus 52 ~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 52 DRFSGSKSGNTASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred CCEEEEccCCEEEEEECCCChhhCEEEEEEEccC
Confidence 4677666666778999999999999999988754
No 156
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.94 E-value=5.2e-05 Score=39.26 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=30.0
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEE-cCCcceeEEEEEE
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAE-NASGKDEADVEIT 59 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~-n~~g~~~~~~~l~ 59 (68)
....|.|.+++.+|+|.|+|... -+.|..++.+.|.
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~~ 94 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEVV 94 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEEE
Confidence 34689999999999999999986 5688888877753
No 157
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.83 E-value=5.2e-05 Score=38.83 Aligned_cols=45 Identities=11% Similarity=0.134 Sum_probs=28.8
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAE 46 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~ 46 (68)
+.|+|+|.....-.............+.|..++..|+|.|.|...
T Consensus 31 f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 31 FILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred EEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 578898865331000000112234578999999999999999865
No 158
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.75 E-value=0.00018 Score=38.18 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044 22 VPYNTKLSIVDILRKNSGVYRIKAENA 48 (68)
Q Consensus 22 ~~~~~~l~I~~~~~~d~G~Y~c~a~n~ 48 (68)
..+...|.|.+++.+|+|.|.|.++..
T Consensus 76 ~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 76 GKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred CCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 345678999999999999999988765
No 159
>PHA03376 BARF1; Provisional
Probab=97.75 E-value=0.00042 Score=40.29 Aligned_cols=31 Identities=10% Similarity=0.016 Sum_probs=25.5
Q ss_pred eCCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 22 ~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
..+.-.|.|.+++.+|.|.|+|..+-.....
T Consensus 83 ~~gnvsLvI~~l~lSDdGtY~C~fQkge~~~ 113 (221)
T PHA03376 83 SANTFFLVVTAANISHDGNYLCRMKLGETEV 113 (221)
T ss_pred cCCeEEEEEEeeeecCCceEEEEEEcCCCce
Confidence 3567789999999999999999988655433
No 160
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=97.67 E-value=9.3e-05 Score=44.49 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=36.0
Q ss_pred eEEEeC-CEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044 2 FDIFCP-RSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENAS 49 (68)
Q Consensus 2 ~~W~k~-g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~ 49 (68)
+.|... |+.|.....+.++.++ .|.+.+...+++|.|+|.++-..
T Consensus 15 y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 15 YLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred eEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence 679875 6677765677776554 59999999999999999998666
No 161
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.60 E-value=0.00012 Score=35.56 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=23.7
Q ss_pred CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEE
Q psy7044 15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIK 44 (68)
Q Consensus 15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~ 44 (68)
+|+.+... .+...|.|.+++.+|+|.|.|.
T Consensus 49 ~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 49 GRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 45555544 4567899999999999999995
No 162
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.59 E-value=0.00024 Score=37.08 Aligned_cols=50 Identities=6% Similarity=-0.004 Sum_probs=32.9
Q ss_pred eEEEeCCEEeccCCCEEE---EEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 2 FDIFCPRSQVRSEGNVEI---VNVPYNTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~---~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
+.|+|++++|.... ... ......++|.+.-...+|.-.|+|.|++..+..
T Consensus 36 i~W~rG~~~l~~~~-~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~ 88 (100)
T cd05755 36 VVLLRGNETLSRQP-FGDNTKSPVNAPATITITVDREDHGANFSCETELDLRPE 88 (100)
T ss_pred EEEeeCCEEcccce-eccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence 68999999997421 111 011124567777555555559999999988765
No 163
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.58 E-value=0.00018 Score=35.18 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=32.1
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
+.|+| |.++.... ...|.+-+...+-.|.|.|.++| .+....|.|.
T Consensus 19 i~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVy 64 (69)
T cd07691 19 ITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVY 64 (69)
T ss_pred EEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEE
Confidence 78999 66554211 34688889999999999999877 3344445554
No 164
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.55 E-value=0.0014 Score=34.71 Aligned_cols=50 Identities=2% Similarity=-0.066 Sum_probs=29.9
Q ss_pred eEEEeCCEEeccCCCEEEEEeCC-----eEEEEEcCCCCCCCE-EEEEEEEcCCcce
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPY-----NTKLSIVDILRKNSG-VYRIKAENASGKD 52 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~-----~~~l~I~~~~~~d~G-~Y~c~a~n~~g~~ 52 (68)
++|+|||+++.....-.....++ .+.|.+.. ...|.| .|+|.+.......
T Consensus 40 v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l~~ 95 (111)
T cd05772 40 VKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTLQA 95 (111)
T ss_pred EEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCCCC
Confidence 68999999987422111111222 34466664 444444 5999999876543
No 165
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.47 E-value=0.0012 Score=32.26 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=31.5
Q ss_pred eEEEeCCEEeccCCC-EEE-EEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044 2 FDIFCPRSQVRSEGN-VEI-VNVPY----NTKLSIVDILRKNSGVYRIKAENASG 50 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~-~~~-~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g 50 (68)
++|+|||+++..+.. ... ...++ .+.|.|......+...|+|.+..+..
T Consensus 18 v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~ 72 (75)
T smart00407 18 VTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL 72 (75)
T ss_pred EEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence 689999998653211 111 11222 23577777777888999999987654
No 166
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.43 E-value=0.00074 Score=35.48 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=26.8
Q ss_pred CCEEEEE--eCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044 15 GNVEIVN--VPYNTKLSIVDILRKNSGVYRIKAENA 48 (68)
Q Consensus 15 ~~~~~~~--~~~~~~l~I~~~~~~d~G~Y~c~a~n~ 48 (68)
+|+.+.. ..+...|.|.+++.+|+|.|.|.+...
T Consensus 59 ~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 59 GRYSVNFQKAQKSISLTISALQLEDSAKYFCALSTL 94 (116)
T ss_pred CeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEECC
Confidence 5666653 244678999999999999999998853
No 167
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.43 E-value=0.00036 Score=36.26 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=24.7
Q ss_pred CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044 16 NVEIVNVPYNTKLSIVDILRKNSGVYRIKAEN 47 (68)
Q Consensus 16 ~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n 47 (68)
++.+........|.|.+++.+|+|.|-|.+.+
T Consensus 59 rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 59 RFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred eEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence 34443444566799999999999999998764
No 168
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.33 E-value=0.0011 Score=33.79 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=26.8
Q ss_pred CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044 15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENAS 49 (68)
Q Consensus 15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~ 49 (68)
.|+.+... .+...|+|.+++.+|+|.|.|.+.+..
T Consensus 51 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 51 GRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred CCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 45555422 346789999999999999999887654
No 169
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.31 E-value=0.00061 Score=35.46 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044 23 PYNTKLSIVDILRKNSGVYRIKAEN 47 (68)
Q Consensus 23 ~~~~~l~I~~~~~~d~G~Y~c~a~n 47 (68)
.....|+|.+++.+|+|.|-|...+
T Consensus 69 ~~~~~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 69 SSRYRLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred CCEEEEEECCCCHHHCEEEEEeEcC
Confidence 3456799999999999999998764
No 170
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.29 E-value=0.0045 Score=31.70 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~ 62 (68)
+...|.+.++...|+|.++|.+.-..-...+.+.|.|++
T Consensus 49 ~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl~ 87 (88)
T cd07694 49 DKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVLA 87 (88)
T ss_pred CccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEEe
Confidence 345789999999999999999975544556777777653
No 171
>KOG1480|consensus
Probab=97.26 E-value=0.00016 Score=48.93 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=43.5
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVL 61 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~ 61 (68)
+.|+|++..+++.+++.... .+-|.|..+...|+|.|+|.|.|-++.. ...+.+.|.
T Consensus 162 ~~w~k~e~~~~pd~n~~~~~---d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 162 VEWLKNEVVIDPDANVIRAS---DHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred hhccccCCCCCccccchhhh---cCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 57999999998755554332 3458999999999999999999999966 444555443
No 172
>KOG3515|consensus
Probab=97.14 E-value=0.00072 Score=45.73 Aligned_cols=64 Identities=17% Similarity=0.083 Sum_probs=48.7
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE 65 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~ 65 (68)
+.|.+++.++..-..-..........+.+.++.+.|.|.|.|.|.|..|.+.+...+.+...|.
T Consensus 434 ~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~ 497 (741)
T KOG3515|consen 434 FYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPH 497 (741)
T ss_pred hhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCc
Confidence 5799999888754443333333344555778999999999999999999999998887776654
No 173
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.01 E-value=0.0039 Score=31.66 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=27.8
Q ss_pred eEEEeCCEEeccCC---CEEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 2 FDIFCPRSQVRSEG---NVEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 2 ~~W~k~g~~l~~~~---~~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
++|+++|..+..+. .+. .+.++ .+.|.|. ..+...|+|.+.+.....
T Consensus 33 v~W~~~g~~~~~~~~~~~~~-~~~d~ty~~~s~l~v~---~~~~~~ytC~V~H~~~~~ 86 (93)
T cd07698 33 VTWLRDGEDSVDDVESGEIL-PNGDGTYQLWVTLEVP---PEDKARYSCRVEHSGLKE 86 (93)
T ss_pred EEEEECCEECcccccccceE-ECCCCeEEEEEEEEEC---CCCCCEEEEEEEeCCCCC
Confidence 68999997543221 111 12222 2245555 448899999998877643
No 174
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.85 E-value=0.012 Score=30.32 Aligned_cols=32 Identities=6% Similarity=0.053 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEE
Q psy7044 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADV 56 (68)
Q Consensus 25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~ 56 (68)
.+.|.+.-...+|.-.|+|.+.|.........
T Consensus 58 ~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~ 89 (95)
T cd05719 58 TSEYRLVPSREANGKELTCVVSHPTLQEPQRF 89 (95)
T ss_pred EEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence 35788887778888999999999987554443
No 175
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.79 E-value=0.015 Score=29.80 Aligned_cols=48 Identities=17% Similarity=0.138 Sum_probs=28.7
Q ss_pred eEEEeCCEEeccCC-CEE-EEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 2 FDIFCPRSQVRSEG-NVE-IVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 2 ~~W~k~g~~l~~~~-~~~-~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
+.|++||+++..+. ... ..+.++ .+.|.+. ..+...|+|.+.-+....
T Consensus 33 v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l~~ 86 (94)
T cd05766 33 VKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSSLQE 86 (94)
T ss_pred EEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCCCCC
Confidence 68999999987431 111 122222 2234444 346779999998877653
No 176
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.74 E-value=0.0045 Score=29.99 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=23.2
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA 48 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~ 48 (68)
+.|.+|+..+...+. .+...+-. +++|.|+|.+.+.
T Consensus 21 i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 21 IKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred ceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence 679999866653222 22333333 8899999998644
No 177
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.73 E-value=0.0099 Score=30.73 Aligned_cols=51 Identities=10% Similarity=0.012 Sum_probs=31.8
Q ss_pred eEEEeCCEEeccCCC--EEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 2 FDIFCPRSQVRSEGN--VEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~--~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
+.|++||+++..+.. ......++ .+.|.+......+...|+|.+..+....
T Consensus 36 v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l~~ 92 (100)
T cd07699 36 VQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGLSS 92 (100)
T ss_pred EEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCCCC
Confidence 689999999863210 01122122 2356676666566889999998776543
No 178
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.69 E-value=0.019 Score=29.50 Aligned_cols=51 Identities=8% Similarity=0.005 Sum_probs=31.4
Q ss_pred eEEEeCCEEeccCCC--EEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 2 FDIFCPRSQVRSEGN--VEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~--~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
++|++||+++..+.. ......++ .+.|.+....-.+...|+|.+..+....
T Consensus 33 vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~ 89 (94)
T cd05847 33 VEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF 89 (94)
T ss_pred EEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence 689999999742210 01111121 2356677555557789999998877653
No 179
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.57 E-value=0.0086 Score=31.73 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=25.0
Q ss_pred CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044 15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAEN 47 (68)
Q Consensus 15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n 47 (68)
+|+.+.... ....|+|.+++.+|+|.|-|.+..
T Consensus 63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 63 GRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred CcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 355554433 345799999999999999998765
No 180
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.55 E-value=0.031 Score=28.72 Aligned_cols=46 Identities=4% Similarity=0.104 Sum_probs=27.5
Q ss_pred eEEEeCCEEeccCCC-EEE-EEeCC-e---EEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044 2 FDIFCPRSQVRSEGN-VEI-VNVPY-N---TKLSIVDILRKNSGVYRIKAENASGK 51 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~-~~~-~~~~~-~---~~l~I~~~~~~d~G~Y~c~a~n~~g~ 51 (68)
++|+|||+++. +.. ..+ .+.++ . +.|.+. ..+...|+|.+.-....
T Consensus 34 v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~l~ 85 (93)
T cd05770 34 IRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNSMS 85 (93)
T ss_pred EEEEECCEECC-CcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECCCC
Confidence 68999999986 321 111 12222 1 234444 56778899999875543
No 181
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.52 E-value=0.02 Score=29.43 Aligned_cols=47 Identities=9% Similarity=0.010 Sum_probs=27.9
Q ss_pred eEEEeCCEEeccCCC-EE-EEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044 2 FDIFCPRSQVRSEGN-VE-IVNVPY----NTKLSIVDILRKNSGVYRIKAENASGK 51 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~-~~-~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~ 51 (68)
++|++||.++..+.. .. ..+.++ .+.|.+.. .+...|+|.+.-....
T Consensus 34 v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~l~ 86 (94)
T cd05767 34 VTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWGLE 86 (94)
T ss_pred EEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCCCC
Confidence 689999999864211 11 112222 23466653 4566999999876543
No 182
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.51 E-value=0.01 Score=30.88 Aligned_cols=51 Identities=8% Similarity=-0.021 Sum_probs=30.3
Q ss_pred eEEEeCCEEeccCCCEE--EEEe---CC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 2 FDIFCPRSQVRSEGNVE--IVNV---PY----NTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~--~~~~---~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
++|++||+++....... .... ++ .+.|.|......+...|+|.+.-+....
T Consensus 35 v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l~~ 94 (102)
T cd05768 35 VKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEALPL 94 (102)
T ss_pred EEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCCCc
Confidence 68999999986432111 1111 12 2356665444456678999998766543
No 183
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.44 E-value=0.013 Score=29.01 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=29.8
Q ss_pred eEEEeCCEEeccCCCE--EEEEeCCe----EEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044 2 FDIFCPRSQVRSEGNV--EIVNVPYN----TKLSIVDILRKNSGVYRIKAENASGK 51 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~--~~~~~~~~----~~l~I~~~~~~d~G~Y~c~a~n~~g~ 51 (68)
+.|+++|..+...... .....++. +.|.+. ..+...|+|.+..+...
T Consensus 27 v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 27 VTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp EEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred EEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 7899999998743221 11123332 346665 56666899999887664
No 184
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=96.40 E-value=0.04 Score=29.72 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044 26 TKLSIVDILRKNSGVYRIKAENASGK 51 (68)
Q Consensus 26 ~~l~I~~~~~~d~G~Y~c~a~n~~g~ 51 (68)
+.|.+......+...|+|.+.+....
T Consensus 108 s~L~v~~~~~~~g~~ytC~V~H~~l~ 133 (139)
T cd05771 108 SHLTLEPGTEDAGATYTCRVSHVSLE 133 (139)
T ss_pred EEEEecCCccCCCCEEEEEEEcCCCC
Confidence 56888877777888999999887654
No 185
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.31 E-value=0.043 Score=28.30 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=25.6
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044 26 TKLSIVDILRKNSGVYRIKAENASGKDEADVEI 58 (68)
Q Consensus 26 ~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l 58 (68)
+.|.+.....+|.-.|+|+|+|+.......+.+
T Consensus 59 S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 59 SEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred EEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 468887777788999999999998765554443
No 186
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.27 E-value=0.018 Score=31.48 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=36.8
Q ss_pred eEEEeCCEEecc--C-CCEE---------E-EEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCPRSQVRS--E-GNVE---------I-VNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~--~-~~~~---------~-~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
+.|..+|+.+-. + .+.. + ....+..+|.+...+.- .|.|+|.+.......+..+.|.+
T Consensus 49 VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 49 VKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVTELSREGETTIELKY 119 (130)
T ss_dssp EEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEEecCCCceEEEEEEE
Confidence 689999887641 1 1110 1 00123445777775555 89999999999888888888876
No 187
>PHA02982 hypothetical protein; Provisional
Probab=96.07 E-value=0.021 Score=33.85 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=30.1
Q ss_pred EEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 17 VEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 17 ~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
+.+.-+...|+|+|+++..+..|.|+|.|.-..+..
T Consensus 91 y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~ 126 (251)
T PHA02982 91 YALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKE 126 (251)
T ss_pred EEEEEeccceeEEeccCCcccCCceEEEEecCCCch
Confidence 445566778999999999999999999999877644
No 188
>PHA03042 CD47-like protein; Provisional
Probab=95.99 E-value=0.04 Score=33.64 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=35.3
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
+.|..||+.+-.... .+.++|.....+. -.|.|+|.|.+..-.-...+.|.-.
T Consensus 53 V~Wkf~~~~If~~n~------tn~aSL~~~f~~~-l~GNYTCEv~~l~n~gk~~IeLk~~ 105 (286)
T PHA03042 53 INWKFNNKVIFKKNN------TNTSSLKFNFSKN-LSGNYTCEAINKFNKIKNTIELQYV 105 (286)
T ss_pred EEEEeCCeeEEEecC------CcceEEEEecccc-CCCceeEEEeecccCccEEEEEEEE
Confidence 689999988753222 1235677765444 4899999999876655666666543
No 189
>PHA03283 envelope glycoprotein E; Provisional
Probab=95.97 E-value=0.056 Score=35.64 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=35.9
Q ss_pred CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044 23 PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK 64 (68)
Q Consensus 23 ~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p 64 (68)
...+.|.|.+++..++|.|+.-..|..+..+..+.|.|.+++
T Consensus 131 ~~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~ 172 (542)
T PHA03283 131 PERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPP 172 (542)
T ss_pred CCCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCC
Confidence 445789999999999999999999988877888888887743
No 190
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.88 E-value=0.02 Score=29.61 Aligned_cols=46 Identities=7% Similarity=-0.104 Sum_probs=25.5
Q ss_pred eEEEeCCEEeccCCC-E-EEEEeCC---eEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044 2 FDIFCPRSQVRSEGN-V-EIVNVPY---NTKLSIVDILRKNSGVYRIKAENAS 49 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~-~-~~~~~~~---~~~l~I~~~~~~d~G~Y~c~a~n~~ 49 (68)
++|.+||+++..+.. . .+.+.+. .+.|.+...+. ...|+|.+.-..
T Consensus 35 v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~--~~~ysC~V~H~g 85 (96)
T cd07697 35 VHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSL--GKKFRCIYKHEG 85 (96)
T ss_pred EEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhC--CCeEEEEEEECC
Confidence 689999999763311 0 1112221 23466664332 344999998744
No 191
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=95.87 E-value=0.066 Score=26.55 Aligned_cols=51 Identities=6% Similarity=0.048 Sum_probs=32.4
Q ss_pred eEEEeCCEEeccCCCEEE-EEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 2 FDIFCPRSQVRSEGNVEI-VNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~-~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
++|+.++.++........ ....+ .+.|.+......+...++|.|.|+....
T Consensus 32 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 32 ITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp EEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred EEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 789999988821111111 11111 2468887666678899999999987653
No 192
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=95.66 E-value=0.085 Score=28.13 Aligned_cols=53 Identities=9% Similarity=0.058 Sum_probs=32.3
Q ss_pred eEEEeCCEEeccCCC---EEEEEeCC----eEEEEEcCCCCCC-CEEEEEEEEcCCcceeE
Q psy7044 2 FDIFCPRSQVRSEGN---VEIVNVPY----NTKLSIVDILRKN-SGVYRIKAENASGKDEA 54 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~---~~~~~~~~----~~~l~I~~~~~~d-~G~Y~c~a~n~~g~~~~ 54 (68)
+.|++||+++..+.. ......++ .+.|.|...+-.+ .-.|+|.+.-.......
T Consensus 37 V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~~ 97 (115)
T cd05769 37 LSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDTD 97 (115)
T ss_pred EEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccce
Confidence 689999999874321 11221111 3457777554433 67899999877665543
No 193
>KOG4597|consensus
Probab=95.00 E-value=0.042 Score=35.98 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=33.2
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044 26 TKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62 (68)
Q Consensus 26 ~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~ 62 (68)
..|.|-+....|+|-|+|.|.|.+|.....+.+.+..
T Consensus 257 cql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 257 CQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSSVK 293 (560)
T ss_pred eeEEEcchhhcCCCceeeccccccceeeccceeeeec
Confidence 4699999999999999999999999998888877653
No 194
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.73 E-value=0.27 Score=25.28 Aligned_cols=52 Identities=4% Similarity=-0.112 Sum_probs=27.2
Q ss_pred eEEEeCCEEec-cCCCEEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCccee
Q psy7044 2 FDIFCPRSQVR-SEGNVEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDE 53 (68)
Q Consensus 2 ~~W~k~g~~l~-~~~~~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~ 53 (68)
++|+|||.... ........+.++ .+.|.+....-.+.-.|+|.+..+.....
T Consensus 34 v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~~p 90 (96)
T cd07696 34 VTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLPTP 90 (96)
T ss_pred EEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCCCC
Confidence 68999974332 111111111222 23455554443445689999988765443
No 195
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=94.03 E-value=0.37 Score=24.11 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCEEEEEEE-EcCCcceeEEEEEEEE
Q psy7044 27 KLSIVDILRKNSGVYRIKA-ENASGKDEADVEITVL 61 (68)
Q Consensus 27 ~l~I~~~~~~d~G~Y~c~a-~n~~g~~~~~~~l~V~ 61 (68)
.+........|+|.+.|.| .|..-..+....|.|.
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v~ 79 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILVL 79 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEcC
Confidence 4667778889999999999 7777777777777664
No 196
>PHA03286 envelope glycoprotein E; Provisional
Probab=93.78 E-value=0.31 Score=31.85 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=32.3
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI 62 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~ 62 (68)
..+.|+|.+++...+|.|+.-..|..|.. +..+.|.|.+
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~ 164 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSG 164 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEec
Confidence 34679999999999999999999998865 5667777753
No 197
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.71 E-value=0.16 Score=26.08 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=25.8
Q ss_pred eEEEeCCEEeccCCCE--EEEE-eCC---eEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044 2 FDIFCPRSQVRSEGNV--EIVN-VPY---NTKLSIVDILRKNSGVYRIKAENAS 49 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~--~~~~-~~~---~~~l~I~~~~~~d~G~Y~c~a~n~~ 49 (68)
++|+|||++ ..+... .+.. ++. .+.|.+...+-...-.|+|.++...
T Consensus 35 vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 35 FTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred EEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 689999998 422100 1111 121 2345555433223667999998765
No 198
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.12 E-value=0.18 Score=26.32 Aligned_cols=49 Identities=6% Similarity=-0.037 Sum_probs=27.2
Q ss_pred eEEEeCCEEeccCCCEEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGK 51 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~ 51 (68)
+.|.++|.+ ...........++ .+.|.+..-.-.....|+|.+..+...
T Consensus 39 V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l~ 91 (99)
T cd04986 39 FTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEGD 91 (99)
T ss_pred EEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCcc
Confidence 789999876 2100001111122 235666644445556699999887764
No 199
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=92.84 E-value=0.76 Score=26.11 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT 59 (68)
Q Consensus 25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~ 59 (68)
.-.|.|++.+..|+|.|-++++=........+.+.
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~ 157 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLS 157 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECCCCCCcEEEEe
Confidence 45699999999999999999986665544444443
No 200
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=92.36 E-value=0.77 Score=23.00 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=28.9
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEA 54 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~ 54 (68)
+.|+-||+.+..... ...+.+. ....|.|++.+....|....
T Consensus 45 ~~W~vdg~~~g~~~~--------~~~~~~~---~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 45 VYWFVDGEPLGTTQP--------GHQLFWQ---PDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred EEEEECCEEcccCCC--------CCeEEeC---CCCCeeEEEEEEcCCCCEEE
Confidence 689999999943222 1233444 46789999999998886544
No 201
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=92.22 E-value=0.7 Score=22.25 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=36.2
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
..|+++|+.+.. -.+.+. ...-....-+.......|.+++.+..+.|..=....+.|
T Consensus 9 H~W~~~g~~~~~-i~l~i~-g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 9 HRWYKNGKLVAR-IPLPIS-GGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEECCEEEEE-EEEecc-CCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 469999988762 112222 111233444455568999999999999998766555544
No 202
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=91.19 E-value=0.062 Score=34.77 Aligned_cols=38 Identities=34% Similarity=0.406 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044 25 NTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI 62 (68)
Q Consensus 25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~ 62 (68)
.+.|.|.+++..|+|.|+....|..|.. +..+.|.|..
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp ---------------------------------------
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 3569999999999999999999888855 5557777765
No 203
>KOG3515|consensus
Probab=90.53 E-value=0.22 Score=34.31 Aligned_cols=62 Identities=13% Similarity=0.099 Sum_probs=45.3
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEEEcCCcCC
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG-KDEADVEITVLILKENI 67 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V~~~p~~~ 67 (68)
.+.|++.++.+. .+... .-...|......++.-++|-|.|.|..| .......+.|..+|-.+
T Consensus 39 ~~eW~h~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~ 101 (741)
T KOG3515|consen 39 DVEWYHSTSGEH--GRYAT---IADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACL 101 (741)
T ss_pred ceEEEecCcccc--ccccc---ccCCceeeecchhhhhhhhhhhhcccccCceecceeeccccCcccc
Confidence 368999988877 33222 1234688888899999999999999988 44667777777777543
No 204
>PHA03282 envelope glycoprotein E; Provisional
Probab=90.11 E-value=1.6 Score=28.94 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=18.3
Q ss_pred EEEEcCCCCCCCEEEEEEEE
Q psy7044 27 KLSIVDILRKNSGVYRIKAE 46 (68)
Q Consensus 27 ~l~I~~~~~~d~G~Y~c~a~ 46 (68)
+|.|.++..+|+|.|.+.+.
T Consensus 125 tl~l~~a~~~DsG~Y~L~~~ 144 (540)
T PHA03282 125 TLVLREARETDSGMYVLSVS 144 (540)
T ss_pred eEEEeeccccCCceEEEEec
Confidence 59999999999999999964
No 205
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=89.31 E-value=1.1 Score=24.01 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=19.8
Q ss_pred CCeEEEEEcCCCCCCCEEEEEEE
Q psy7044 23 PYNTKLSIVDILRKNSGVYRIKA 45 (68)
Q Consensus 23 ~~~~~l~I~~~~~~d~G~Y~c~a 45 (68)
.+.-.|.+.+++..|++.|-|..
T Consensus 71 ~ntv~L~l~~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 71 NEQVNFTLQNLRANQTDIYFCKI 93 (115)
T ss_pred CCEEEEEEcCCCHHHCeEEEEEe
Confidence 44567999999999999999964
No 206
>PHA03290 envelope glycoprotein I; Provisional
Probab=88.06 E-value=3.2 Score=26.36 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAENASG 50 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g 50 (68)
..-.|.|.+....|+|.|-+++.=..-
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ldga 153 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLDHS 153 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeCCC
Confidence 345799999999999999999885544
No 207
>PHA03289 envelope glycoprotein I; Provisional
Probab=88.01 E-value=2.7 Score=26.59 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.-.|.|.+....|+|.|-++++=.......-+.+.+
T Consensus 121 gvLL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv 156 (352)
T PHA03289 121 GLLLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSV 156 (352)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCccCceEEEEE
Confidence 347999999999999999999876664434444433
No 208
>PHA03281 envelope glycoprotein E; Provisional
Probab=87.98 E-value=1.8 Score=29.23 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=31.6
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEEEcCC
Q psy7044 26 TKLSIVDILRKNSGVYRIKAENASG-KDEADVEITVLILK 64 (68)
Q Consensus 26 ~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V~~~p 64 (68)
+.|.|.+++...+|.|+.-+....| .-.+.+.|.|.+++
T Consensus 298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~ 337 (642)
T PHA03281 298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDE 337 (642)
T ss_pred CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCc
Confidence 4799999999999999998887767 34667788887644
No 209
>PHA03292 envelope glycoprotein I; Provisional
Probab=87.19 E-value=3.4 Score=26.70 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT 59 (68)
Q Consensus 25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~ 59 (68)
.-.|.|.+....|+|.|-++++=.......-+.|.
T Consensus 127 ~vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~ls 161 (413)
T PHA03292 127 NVLLNITGPQPADSGAYILRVKLDHAPTADVFGLS 161 (413)
T ss_pred ceEEEeCCCCcccceeEEEEEEeCCCccCceeEEE
Confidence 45799999999999999999987766443333333
No 210
>PHA03291 envelope glycoprotein I; Provisional
Probab=87.18 E-value=3.5 Score=26.44 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
..-.|.|.+....|+|.|-+++.=.......-+.|.+.
T Consensus 127 ~~vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~ 164 (401)
T PHA03291 127 RQPLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLA 164 (401)
T ss_pred cceEEEecCCCcccceeEEEEEEeCCCcccceEEEeee
Confidence 34579999999999999999999887776666666655
No 211
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=85.43 E-value=3.4 Score=21.01 Aligned_cols=44 Identities=2% Similarity=0.036 Sum_probs=31.5
Q ss_pred CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044 1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAE 46 (68)
Q Consensus 1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~ 46 (68)
.+-|..|+..++ ++++... .+..+.+++.+.....+-.|.|...
T Consensus 39 ~I~Wkln~~~iP-~~qy~~i-n~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 39 QIVWKLNGEKIP-GSQYRVI-NDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp CEEEECSSCEST-CGCEEEE-STTEEEEEESS--SSEEEEEEEEEC
T ss_pred eEEEEECCEECC-hhHccee-CCeEEEEEEccCCCCCceEEEEEEc
Confidence 367999999666 5666543 4566899999999998888888754
No 212
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=84.65 E-value=3.4 Score=21.67 Aligned_cols=47 Identities=11% Similarity=0.110 Sum_probs=25.5
Q ss_pred eEEEeCCEEeccCCCEE---EEE-eCCeEEEEEcCCCCCCCE-EEEEEEEcCC
Q psy7044 2 FDIFCPRSQVRSEGNVE---IVN-VPYNTKLSIVDILRKNSG-VYRIKAENAS 49 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~---~~~-~~~~~~l~I~~~~~~d~G-~Y~c~a~n~~ 49 (68)
+.|+++...+....-.. ... ......+++.-. ++|.| .|.|.|.=..
T Consensus 35 v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l 86 (99)
T cd07689 35 IELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHI 86 (99)
T ss_pred EEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEee
Confidence 57888777665322110 000 112345666654 66666 9999987433
No 213
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=83.35 E-value=0.72 Score=30.01 Aligned_cols=31 Identities=29% Similarity=0.318 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEcCCcceeE
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEA 54 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~ 54 (68)
..|+|+|.++.-...|.|+|.|.-.--..++
T Consensus 344 k~STLTIkka~I~N~GCY~~~a~~g~~~~ec 374 (500)
T PHA02914 344 KNSTLTIKKAHINNAGCYEAQAFMGKFKEEC 374 (500)
T ss_pred hhceEEeeeEEEEcCCceEEEEecCcchhhh
Confidence 3678999999999999999998755444343
No 214
>KOG0613|consensus
Probab=82.84 E-value=0.54 Score=34.09 Aligned_cols=60 Identities=17% Similarity=0.016 Sum_probs=45.5
Q ss_pred eEEEeCCEEeccCC--CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEG--NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 2 ~~W~k~g~~l~~~~--~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
+.|++++.....+. -..+..+...+.+.|..+...+.+.|.|.|.|..|.........|.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs 428 (1205)
T KOG0613|consen 367 AQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVS 428 (1205)
T ss_pred heeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcc
Confidence 46777776665443 3455566677889999999999999999999999987666555544
No 215
>PHA03189 UL14 tegument protein; Provisional
Probab=82.22 E-value=9.1 Score=24.24 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=22.4
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 28 l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
|+++ +.-+-+|.|.|.+.|+.-.--.+..+.|.
T Consensus 136 LtF~-v~t~taG~Y~CvLrN~tHglv~~rf~ivt 168 (348)
T PHA03189 136 LTFR-VSTSTAGMYECVLRNETHGLVLQRFVIVT 168 (348)
T ss_pred EEEE-EEecccceEEEEeccccceeeeEEeeeee
Confidence 4443 66778999999999987655444444443
No 216
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=78.03 E-value=2.7 Score=21.83 Aligned_cols=27 Identities=7% Similarity=-0.036 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 26 TKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 26 ~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
+.|.+......|.-.++|.+..+.-..
T Consensus 61 S~~~l~p~r~d~G~~vtC~V~H~al~~ 87 (97)
T cd07704 61 SEYIWVPSRHANGHPLTCVVSHPALQQ 87 (97)
T ss_pred EEEEEEeCHHHCCcEEEEEEeCcccCC
Confidence 467777777789999999999886643
No 217
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=75.48 E-value=17 Score=24.05 Aligned_cols=39 Identities=5% Similarity=0.016 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCCCCEEEEEEEE-cCCcceeEEEEEEEEcC
Q psy7044 25 NTKLSIVDILRKNSGVYRIKAE-NASGKDEADVEITVLIL 63 (68)
Q Consensus 25 ~~~l~I~~~~~~d~G~Y~c~a~-n~~g~~~~~~~l~V~~~ 63 (68)
...+.+.|.+..|-|.|+|+-. |..-.-...+.|.|..+
T Consensus 80 eYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVmPK 119 (500)
T PHA02914 80 EYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKAPK 119 (500)
T ss_pred eeEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEccc
Confidence 3457888999999999999876 33334456677776543
No 218
>PHA03282 envelope glycoprotein E; Provisional
Probab=75.20 E-value=7.7 Score=25.94 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCCCCEEEEEEEE-cCCcceeEEEEEE
Q psy7044 23 PYNTKLSIVDILRKNSGVYRIKAE-NASGKDEADVEIT 59 (68)
Q Consensus 23 ~~~~~l~I~~~~~~d~G~Y~c~a~-n~~g~~~~~~~l~ 59 (68)
++...|.+.|+..+++|.|-|++. |.+=.+..-+.|.
T Consensus 330 ~n~VdL~F~nAp~saSGLYVfVl~yNGHVeAW~YtlVS 367 (540)
T PHA03282 330 GHTVNLQLRDASEASGGLYVCVVYVNGHVHAWGHVVIS 367 (540)
T ss_pred CCccceEecCCCcccCceEEEEEEECCeeeeeEEEEEe
Confidence 444479999999999999999987 6665665544433
No 219
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=71.05 E-value=15 Score=25.79 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=27.9
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
+.|+-||.+|....+-+ -..-...+.|.|++.+.-+.|..
T Consensus 685 ~~W~lng~~l~~~~~~~-----------~~~w~~~~~G~~~ltVid~~G~~ 724 (733)
T COG4953 685 IYWFLNGEPLGEASRNR-----------PVTWKPEDAGYYKLTVIDASGRS 724 (733)
T ss_pred eEEEeCCcCccccccCC-----------cceeccCCCCeEEEEEEccCCce
Confidence 67999999997532211 11123567999999999999965
No 220
>PHA03286 envelope glycoprotein E; Provisional
Probab=69.14 E-value=18 Score=24.10 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=25.5
Q ss_pred EEEEcCCCCCCCEEEEEEEE-cCCcceeEEEEEE
Q psy7044 27 KLSIVDILRKNSGVYRIKAE-NASGKDEADVEIT 59 (68)
Q Consensus 27 ~l~I~~~~~~d~G~Y~c~a~-n~~g~~~~~~~l~ 59 (68)
.|.+.|+..+++|.|-|++. |.+=.+..-..|.
T Consensus 308 nL~f~nA~~s~SGLYVfVl~yNGH~eAWtYtlvS 341 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVALYNGRPLAWTYVYLS 341 (492)
T ss_pred ceeecCCCcccCceEEEEEEECCcceeeeEEEEe
Confidence 48999999999999999986 6666665544443
No 221
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=66.97 E-value=9.9 Score=18.25 Aligned_cols=14 Identities=14% Similarity=0.598 Sum_probs=8.5
Q ss_pred EEEEEcCCCCCCCE
Q psy7044 26 TKLSIVDILRKNSG 39 (68)
Q Consensus 26 ~~l~I~~~~~~d~G 39 (68)
.-|++-+++..+.|
T Consensus 50 qNLTLinVt~~~~G 63 (63)
T PF02440_consen 50 QNLTLINVTKTYNG 63 (63)
T ss_pred CeEEEEEecccccC
Confidence 34666666666554
No 222
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=65.79 E-value=6 Score=25.92 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCCCEEEEEEEE-cCCcceeEEEEE
Q psy7044 23 PYNTKLSIVDILRKNSGVYRIKAE-NASGKDEADVEI 58 (68)
Q Consensus 23 ~~~~~l~I~~~~~~d~G~Y~c~a~-n~~g~~~~~~~l 58 (68)
.+...|.+.++..+++|.|-|++. |.+=.+..-..|
T Consensus 266 ~~~~~l~f~~a~~~~sGLYv~V~~~nghv~aW~yt~v 302 (439)
T PF02480_consen 266 SNGVDLQFTNAPESASGLYVFVVYYNGHVEAWTYTLV 302 (439)
T ss_dssp TTSSSEEESS--GGG-EEEEEEEEETTEEEEEEEEEE
T ss_pred CCCcceEecCCCcccCceEEEEEEECCeeeeeEEEEE
Confidence 455569999999999999999987 555455444433
No 223
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=65.75 E-value=14 Score=17.58 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=18.2
Q ss_pred CCCCEEEEEE--EEcCCcceeEEEEEEE
Q psy7044 35 RKNSGVYRIK--AENASGKDEADVEITV 60 (68)
Q Consensus 35 ~~d~G~Y~c~--a~n~~g~~~~~~~l~V 60 (68)
-...|.|++. +.|..|.......+.|
T Consensus 51 y~~~G~y~v~l~v~n~~g~~~~~~~i~v 78 (79)
T smart00089 51 YTKPGTYTVTLTVTNAVGSASATVTVVV 78 (79)
T ss_pred eCCCcEEEEEEEEEcCCCcEEEEEEEEE
Confidence 3467888776 5688886666666655
No 224
>PHA03283 envelope glycoprotein E; Provisional
Probab=65.51 E-value=24 Score=23.96 Aligned_cols=39 Identities=13% Similarity=0.045 Sum_probs=28.3
Q ss_pred EEeCCeEEEEEcCCCCCCCEEEEEEEE-cCCcceeEEEEE
Q psy7044 20 VNVPYNTKLSIVDILRKNSGVYRIKAE-NASGKDEADVEI 58 (68)
Q Consensus 20 ~~~~~~~~l~I~~~~~~d~G~Y~c~a~-n~~g~~~~~~~l 58 (68)
...++...|.+.++..+++|.|-|++. |.+=.+..-..|
T Consensus 309 ~~~~~~v~L~f~nap~~~SGLYVfVv~yNgHveAW~Ytll 348 (542)
T PHA03283 309 QPAQNRVDLLFKNAPASASGLYVFVLLYNGHPEAWTYTLL 348 (542)
T ss_pred eecCCCcceEeccCCcccCceEEEEEEECCeeeeeEEEEE
Confidence 334455679999999999999999987 655555544433
No 225
>PHA03269 envelope glycoprotein C; Provisional
Probab=64.59 E-value=30 Score=23.50 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=28.5
Q ss_pred EEEEEcCCCCCCCEEEEEEEEc---CCcceeEEEEEEEEcCC
Q psy7044 26 TKLSIVDILRKNSGVYRIKAEN---ASGKDEADVEITVLILK 64 (68)
Q Consensus 26 ~~l~I~~~~~~d~G~Y~c~a~n---~~g~~~~~~~l~V~~~p 64 (68)
-.|.|++++..+.|.|.-.+.+ .....+..+.|.+...|
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~P 330 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRP 330 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCC
Confidence 3599999999999999987653 22344566677776666
No 226
>KOG0859|consensus
Probab=63.73 E-value=23 Score=21.09 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=26.6
Q ss_pred EeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 10 ~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
.|+.+.+.+++...+.+.+++. .+|.=.|-|+|.+.+|..
T Consensus 35 klp~~~n~k~tYs~d~y~Fh~l---~~dg~tylcvadds~gR~ 74 (217)
T KOG0859|consen 35 KLPSSSNSKFTYSCDGYTFHYL---VEDGLTYLCVADDSAGRQ 74 (217)
T ss_pred hCCCCCCCceEEecCCeEEEEE---EeCCeEEEEEEecccccc
Confidence 3443334345555555555555 788899999999999864
No 227
>PHA03273 envelope glycoprotein C; Provisional
Probab=61.17 E-value=36 Score=22.82 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=27.1
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCccee--EEEEEEEEcCC
Q psy7044 26 TKLSIVDILRKNSGVYRIKAENASGKDE--ADVEITVLILK 64 (68)
Q Consensus 26 ~~l~I~~~~~~d~G~Y~c~a~n~~g~~~--~~~~l~V~~~p 64 (68)
-.|+|+.++....|.|+-...+..|... ..+.|...-+|
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~P 238 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAP 238 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCC
Confidence 3599999999999999988767655443 33444334444
No 228
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=61.00 E-value=17 Score=23.19 Aligned_cols=18 Identities=6% Similarity=-0.180 Sum_probs=12.9
Q ss_pred CCCCCCEEEEEEEEcCCc
Q psy7044 33 ILRKNSGVYRIKAENASG 50 (68)
Q Consensus 33 ~~~~d~G~Y~c~a~n~~g 50 (68)
+...+...|+|.+.-+..
T Consensus 288 v~~~~~~~Y~C~V~Hsgl 305 (338)
T PHA02865 288 VPTDMSNQIVCVVFHSTL 305 (338)
T ss_pred eCCCCCCCcEEEEEeCCC
Confidence 445577779999887654
No 229
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=55.20 E-value=19 Score=20.85 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=19.8
Q ss_pred CCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044 23 PYNTKLSIVDILRKNSGVYRIKAE 46 (68)
Q Consensus 23 ~~~~~l~I~~~~~~d~G~Y~c~a~ 46 (68)
++.-.+++..++.+-+|.|+|...
T Consensus 90 gG~i~mt~hQVN~DGaGP~~C~iD 113 (184)
T PF11327_consen 90 GGSISMTIHQVNADGAGPFTCDID 113 (184)
T ss_pred CCEEEEEEEEecCCCCcCeEEEEC
Confidence 344568899999999999999874
No 230
>KOG0613|consensus
Probab=55.03 E-value=1.6 Score=31.91 Aligned_cols=52 Identities=10% Similarity=-0.083 Sum_probs=34.3
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCccee
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDE 53 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~ 53 (68)
..|+.+|..+..+...++..+...+.+.|...=+.+.|.|...+-|..|...
T Consensus 221 ~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~ 272 (1205)
T KOG0613|consen 221 ERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQR 272 (1205)
T ss_pred hhhhhcccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhc
Confidence 4688888888877666666555555666666666666666666555555443
No 231
>PHA03281 envelope glycoprotein E; Provisional
Probab=54.35 E-value=33 Score=23.61 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCCCCEEEEEEEE-cCCcceeEEEEEE
Q psy7044 23 PYNTKLSIVDILRKNSGVYRIKAE-NASGKDEADVEIT 59 (68)
Q Consensus 23 ~~~~~l~I~~~~~~d~G~Y~c~a~-n~~g~~~~~~~l~ 59 (68)
.+...|.+.++..+++|.|-|++. |..=.+..-..|.
T Consensus 472 ~n~vdL~F~nApasaSGLYVfVl~yNGHVeAWtYtlvS 509 (642)
T PHA03281 472 DGGSALKFVDAAESLSGLYVFIIHFNGHVEAVAYTVVS 509 (642)
T ss_pred CCCcceEeccCCcccCceEEEEEEECCeeeeeEEEEEe
Confidence 445569999999999999999987 6555555544443
No 232
>PHA03240 envelope glycoprotein M; Provisional
Probab=53.12 E-value=5.1 Score=24.08 Aligned_cols=29 Identities=24% Similarity=0.254 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
..+.|.|.+++.+|.|.|.-...-..|.+
T Consensus 103 ~NstL~i~~vn~sd~~nYcr~k~~~~g~~ 131 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCRKKCPPKGDC 131 (258)
T ss_pred ccceEEEEEEeecCcchhhhccCCCCCCc
Confidence 45789999999999999988776666665
No 233
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=51.20 E-value=38 Score=18.74 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=14.5
Q ss_pred CCCCEEEEEE--EEcCCcce-eEEEEEEEEc
Q psy7044 35 RKNSGVYRIK--AENASGKD-EADVEITVLI 62 (68)
Q Consensus 35 ~~d~G~Y~c~--a~n~~g~~-~~~~~l~V~~ 62 (68)
....|.|+.. +.|..|.. +....+.|.|
T Consensus 79 ~~~gG~y~~~VeLCN~~GCS~S~~~~V~VaD 109 (133)
T PF08329_consen 79 VTKGGRYQMQVELCNADGCSTSAPVEVVVAD 109 (133)
T ss_dssp E-S-EEEEEEEEEEETTEEEE---EEEEEE-
T ss_pred ecCCCEEEEEEEEECCCCcccCCCEEEEEeC
Confidence 3466666554 66999943 4556666665
No 234
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=50.97 E-value=12 Score=18.36 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=19.2
Q ss_pred EEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 29 SIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 29 ~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
.|..++..|.|.|.+.+.+.-|..
T Consensus 44 ~v~~ve~~~~g~yev~~~~~dG~~ 67 (83)
T PF13670_consen 44 QVREVEFDDDGCYEVEARDKDGKK 67 (83)
T ss_pred ceEEEEEcCCCEEEEEEEECCCCE
Confidence 567777877888999988888864
No 235
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=49.10 E-value=24 Score=18.27 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=13.6
Q ss_pred EEEEEcCCCCCCCEEEEEEEE
Q psy7044 26 TKLSIVDILRKNSGVYRIKAE 46 (68)
Q Consensus 26 ~~l~I~~~~~~d~G~Y~c~a~ 46 (68)
.-+.+.++.....|.|.+.+.
T Consensus 32 ~~~~~~~Vd~~~~g~y~~~~~ 52 (125)
T PF03422_consen 32 DWIEYNNVDVPEAGTYTLTIR 52 (125)
T ss_dssp TEEEEEEEEESSSEEEEEEEE
T ss_pred CEEEEEEEeeCCCceEEEEEE
Confidence 346666677777777766544
No 236
>KOG1026|consensus
Probab=47.51 E-value=11 Score=26.58 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=27.5
Q ss_pred CCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044 34 LRKNSGVYRIKAENASGKDEADVEITVLILK 64 (68)
Q Consensus 34 ~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p 64 (68)
+..+.|.|++.++|..|...+.....+...|
T Consensus 336 ~h~~~~~~~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 336 PHSHNGNYTLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred cccccCcceeeecccCccccccCcCccccCC
Confidence 6778999999999999999998888877776
No 237
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=47.50 E-value=61 Score=19.40 Aligned_cols=45 Identities=11% Similarity=0.067 Sum_probs=25.1
Q ss_pred eEEEeCCEEeccCC---CEEEEEeC---CeEEEEE-cCCCCCCCEEEEEEEE
Q psy7044 2 FDIFCPRSQVRSEG---NVEIVNVP---YNTKLSI-VDILRKNSGVYRIKAE 46 (68)
Q Consensus 2 ~~W~k~g~~l~~~~---~~~~~~~~---~~~~l~I-~~~~~~d~G~Y~c~a~ 46 (68)
+.|+.||.++.... ...+-..+ ..+.|++ .+.....--..+|.+.
T Consensus 9 ~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~ 60 (211)
T PF02124_consen 9 FRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVT 60 (211)
T ss_pred EEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEE
Confidence 68999999987321 11222222 1345777 3444445556777765
No 238
>PHA03270 envelope glycoprotein C; Provisional
Probab=43.84 E-value=98 Score=20.77 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEcCC
Q psy7044 27 KLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLILK 64 (68)
Q Consensus 27 ~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~~p 64 (68)
.|.|++++....|.|+-...+..+.. ...+.|..+-.|
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~P 222 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRP 222 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCC
Confidence 49999999999999999988766633 344555555555
No 239
>KOG3611|consensus
Probab=43.69 E-value=55 Score=23.21 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=24.2
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEEEc
Q psy7044 27 KLSIVDILRKNSGVYRIKAENASG-KDEADVEITVLI 62 (68)
Q Consensus 27 ~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V~~ 62 (68)
.+.+..++..|+|.|.|.+....- .......+.+.+
T Consensus 613 ~lll~~~q~~~~G~y~c~~~e~~~~~~~~~~~~~~~~ 649 (737)
T KOG3611|consen 613 GLVLLSVQKLDGGTYPCYADESSFVSTVISVNLHVAR 649 (737)
T ss_pred ceeEEEEeeccCcccccccccCccccceEEEeeeecC
Confidence 367778889999999998875443 334444544443
No 240
>TIGR02073 PBP_1c penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function.
Probab=43.53 E-value=1.2e+02 Score=21.49 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=26.2
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
+.|+-||++|...... ..+... ....|.|++.+....|..
T Consensus 680 ~~W~~dg~~~~~~~~~--------~~~~~~---~~~~G~~~l~v~d~~G~~ 719 (727)
T TIGR02073 680 LYWFLDGKLLGEALPK--------QSILWW---PPAPGFYRLSVVDDDGRI 719 (727)
T ss_pred eEEEECCEEecccCCC--------Cceeec---CCCCeeEEEEEEeCCCCE
Confidence 6799999888642210 112222 347899999999999864
No 241
>PRK11240 penicillin-binding protein 1C; Provisional
Probab=43.10 E-value=1.2e+02 Score=21.62 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=25.6
Q ss_pred eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
+-||-||..+.. . ...+.+. ....|.|++.+..+.|..
T Consensus 727 ~~W~~d~~~~~~-~---------~~~~~~~---~~~~G~~~l~v~d~~G~~ 764 (772)
T PRK11240 727 RWWFLNGEPLTE-R---------GRNVTLH---LTDPGRYQLLVMDESGQI 764 (772)
T ss_pred EEEEECCEEccC-C---------Ccceeec---cCCCccEEEEEECCCCCE
Confidence 568888888841 1 0122232 457899999999999965
No 242
>PHA02935 Hypothetical protein; Provisional
Probab=37.66 E-value=92 Score=18.85 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=34.2
Q ss_pred EEEeCCEEec--cCCCEE-------EEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEE
Q psy7044 3 DIFCPRSQVR--SEGNVE-------IVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITV 60 (68)
Q Consensus 3 ~W~k~g~~l~--~~~~~~-------~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V 60 (68)
.|+-+++.+. ..++.. -+..-..+-|.|.+..-+|+|.|+=..+-.-|.. ..+..+.|
T Consensus 70 swyyndkvialatedrtsgyissfikrvnisltclnisslryedsgsykgvshlkdgvivtttmnisv 137 (349)
T PHA02935 70 SWYYNDKVIALATEDRTSGYISSFIKRVNISLTCLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISV 137 (349)
T ss_pred eeeecCEEEEEeeccccccHHHHHHhhheeeEEEeeccceeeccCCcccCchhhcCceEEEEEEEEEE
Confidence 5999988765 222210 0001122358899999999999998766666633 33344433
No 243
>PF15025 DUF4524: Domain of unknown function (DUF4524)
Probab=37.20 E-value=80 Score=17.82 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=26.8
Q ss_pred eccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044 11 VRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAE 46 (68)
Q Consensus 11 l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~ 46 (68)
...++.++++..++...|........-+=.|.|.+.
T Consensus 112 ~~~~G~v~i~S~dg~A~l~L~~~~~~ftV~f~~kvs 147 (148)
T PF15025_consen 112 RDQDGSVEISSLDGHAYLCLSPSQQEFTVKFLCKVS 147 (148)
T ss_pred ECCCCeEEEEEeCCcEEEEEcccCCEEEEEEEEEec
Confidence 345677888888888888888777777777777654
No 244
>PHA03271 envelope glycoprotein C; Provisional
Probab=36.86 E-value=1.3e+02 Score=20.23 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEcCC
Q psy7044 25 NTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLILK 64 (68)
Q Consensus 25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~~p 64 (68)
.-.|.|+++.-.++|.|.....+..-.. +....+.+...|
T Consensus 206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RP 247 (490)
T PHA03271 206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRP 247 (490)
T ss_pred eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecC
Confidence 3469999999999998877766544322 333444444444
No 245
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=35.95 E-value=33 Score=16.95 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=12.9
Q ss_pred CCCCCCCEEEEEEEEcC
Q psy7044 32 DILRKNSGVYRIKAENA 48 (68)
Q Consensus 32 ~~~~~d~G~Y~c~a~n~ 48 (68)
+.+.+-+-.|.|+|.|.
T Consensus 56 ~~kED~stDYAcIa~~k 72 (74)
T PF05083_consen 56 DLKEDPSTDYACIAKNK 72 (74)
T ss_pred ccccCCCcCeeeeeccC
Confidence 33666778899999885
No 246
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=33.58 E-value=74 Score=16.36 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=16.8
Q ss_pred CCCCCCEEEEEEEEcCCc-ceeEEEE
Q psy7044 33 ILRKNSGVYRIKAENASG-KDEADVE 57 (68)
Q Consensus 33 ~~~~d~G~Y~c~a~n~~g-~~~~~~~ 57 (68)
+....+|.|.+...+..| .-.-.+.
T Consensus 79 L~~~~~G~Y~l~i~~~~g~~l~G~F~ 104 (106)
T PF11589_consen 79 LNGLPSGEYTLEITNGNGTYLYGEFT 104 (106)
T ss_dssp -TTS-SEEEEEEEEECTC-EEEEEEE
T ss_pred eCCCCCccEEEEEEeCCCCEEEEEEE
Confidence 445679999999999988 4444443
No 247
>COG5475 Uncharacterized small protein [Function unknown]
Probab=33.07 E-value=62 Score=15.29 Aligned_cols=28 Identities=11% Similarity=0.283 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCcceeEE
Q psy7044 26 TKLSIVDILRKNSGVYRIKAENASGKDEAD 55 (68)
Q Consensus 26 ~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~ 55 (68)
..++|.....+ |-|.|.--|..|...+.
T Consensus 18 P~Mtvs~~ss~--Gmy~C~Wf~g~g~~~~~ 45 (60)
T COG5475 18 PRMTVSGYSSD--GMYECRWFDGYGVKREA 45 (60)
T ss_pred ceEEEeccccC--CeEEEEEecCCCccccc
Confidence 45666655443 99999999999965443
No 248
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=32.92 E-value=62 Score=15.27 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=14.7
Q ss_pred CCCEEEEEE--EEcCCcceeE-EEEEE
Q psy7044 36 KNSGVYRIK--AENASGKDEA-DVEIT 59 (68)
Q Consensus 36 ~d~G~Y~c~--a~n~~g~~~~-~~~l~ 59 (68)
...|.|.+. +.|..|.... +..+.
T Consensus 54 ~~~G~y~v~l~v~d~~g~~~~~~~~V~ 80 (81)
T cd00146 54 TKPGTYTVTLTVTNAVGSSSTKTTTVV 80 (81)
T ss_pred CCCcEEEEEEEEEeCCCCEEEEEEEEE
Confidence 467888665 5577765544 44443
No 249
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=32.17 E-value=74 Score=15.97 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=18.5
Q ss_pred CCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 37 NSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 37 d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
-++.|.+.+....+.+...+.+.+.
T Consensus 19 ~~~~y~i~v~~~~~~D~l~v~vE~~ 43 (96)
T PF14535_consen 19 VSPEYQIVVTREGGLDELTVRVELR 43 (96)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEES
T ss_pred CCCcEEEEEEcCCCCcEEEEEEEEC
Confidence 3579999999888877766665543
No 250
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=31.55 E-value=76 Score=15.90 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=17.9
Q ss_pred CCEEEEEE--EEcCCc-ceeEEEEEEEEcCCc
Q psy7044 37 NSGVYRIK--AENASG-KDEADVEITVLILKE 65 (68)
Q Consensus 37 d~G~Y~c~--a~n~~g-~~~~~~~l~V~~~p~ 65 (68)
+.|.|.+. |.+..| .....+.|.|.+.++
T Consensus 65 ~~g~~~i~v~a~D~~g~~~~~~f~i~V~~~~~ 96 (97)
T smart00736 65 DVGSLSLKVTATDSSGASASDTFTITVVNTND 96 (97)
T ss_pred CCcEEEEEEEEEECCCCEEEEEEEEEEeCCCC
Confidence 45666554 667776 446667777766543
No 251
>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.14 E-value=8.6 Score=19.86 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=14.9
Q ss_pred eEEEeCCEEeccCCCEEEE
Q psy7044 2 FDIFCPRSQVRSEGNVEIV 20 (68)
Q Consensus 2 ~~W~k~g~~l~~~~~~~~~ 20 (68)
++|+|+..+|..+++++.-
T Consensus 10 ~~wfk~E~~l~~g~~vrff 28 (95)
T COG4841 10 LKWFKEELDLEEGNKVRFF 28 (95)
T ss_pred HHHHHHhcCCCCCCEEEEE
Confidence 4699999999988777643
No 252
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=29.74 E-value=75 Score=15.26 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=13.3
Q ss_pred CEEE--EEEEEcCCcc-eeEEEEEE
Q psy7044 38 SGVY--RIKAENASGK-DEADVEIT 59 (68)
Q Consensus 38 ~G~Y--~c~a~n~~g~-~~~~~~l~ 59 (68)
-|.| ++.|...+|. +.+++.|.
T Consensus 56 ~G~t~V~ytA~D~~GN~a~C~f~V~ 80 (81)
T PF02494_consen 56 VGTTTVTYTATDAAGNSATCSFTVT 80 (81)
T ss_pred eceEEEEEEEEECCCCEEEEEEEEE
Confidence 3555 4568888884 35555544
No 253
>PF01067 Calpain_III: Calpain large subunit, domain III; InterPro: IPR022682 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. This entry represents domain III. It is found in association with PF00648 from PFAM. The function of the domain III and I are currently unknown. Domain II is a cysteine protease and domain IV is a calcium binding domain. Calpains are believed to participate in intracellular signaling pathways mediated by calcium ions. ; PDB: 1QXP_B 2QFE_A 1DF0_A 1U5I_A 3DF0_A 3BOW_A 1KFU_L 1KFX_L.
Probab=29.65 E-value=96 Score=16.46 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=18.1
Q ss_pred CCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044 37 NSGVYRIKAENASGKDEADVEITVLI 62 (68)
Q Consensus 37 d~G~Y~c~a~n~~g~~~~~~~l~V~~ 62 (68)
+.|.|.++...-.-.....+.|.|..
T Consensus 115 ~~G~YvIVPsT~~~~~~g~F~L~v~s 140 (147)
T PF01067_consen 115 PPGTYVIVPSTYEPGQEGEFTLRVFS 140 (147)
T ss_dssp -SEEEEEEEEESSTT--EEEEEEEEE
T ss_pred CCCCEEEEEecCCCCCeeeEEEEEEE
Confidence 67889999887766667788888764
No 254
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=28.50 E-value=57 Score=15.26 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=13.5
Q ss_pred CCCCEEEEEEEEcCCcce
Q psy7044 35 RKNSGVYRIKAENASGKD 52 (68)
Q Consensus 35 ~~d~G~Y~c~a~n~~g~~ 52 (68)
.+.+..|-|.++|..|..
T Consensus 7 kdssnsflctvqnkng~~ 24 (65)
T PF13220_consen 7 KDSSNSFLCTVQNKNGDQ 24 (65)
T ss_pred ecCCCceEEEEecccHhH
Confidence 345667889999998854
No 255
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=28.32 E-value=77 Score=14.90 Aligned_cols=32 Identities=16% Similarity=0.343 Sum_probs=18.4
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044 27 KLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61 (68)
Q Consensus 27 ~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~ 61 (68)
.+.|.++.. |.|.+.+.-........-.+.+.
T Consensus 39 ~f~~~~l~~---g~Y~l~v~~~g~~~~~~~~v~v~ 70 (82)
T PF13620_consen 39 RFSFEGLPP---GTYTLRVSAPGYQPQTQENVTVT 70 (82)
T ss_dssp EEEEEEE-S---EEEEEEEEBTTEE-EEEEEEEES
T ss_pred eEEEEccCC---EeEEEEEEECCcceEEEEEEEEe
Confidence 455665544 99999987666555443344443
No 256
>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes. These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.
Probab=28.20 E-value=87 Score=15.50 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=19.0
Q ss_pred CCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044 36 KNSGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 36 ~d~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.-.|.|.+.+....|..+....+.+
T Consensus 55 ~~~g~~~i~V~~~~G~~Sn~~~f~~ 79 (81)
T cd00604 55 VAPGNYNISVTTVDGVTSNGYNFEV 79 (81)
T ss_pred CCCCceEEEEEECCCcccCcEeEEE
Confidence 4678999999988887766655554
No 257
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=27.46 E-value=85 Score=22.99 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 24 YNTKLSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
+.+.+.++++..+.+|.+++-++|.+..+
T Consensus 375 g~s~vYv~~L~t~~~~~vkl~ve~aaipr 403 (912)
T TIGR02171 375 GKSSVYVRNLNASGSGLVKLPVENAAIPR 403 (912)
T ss_pred CCceEEEEehhccCCCceEeecccccccc
Confidence 56779999999999999999999887754
No 258
>KOG1428|consensus
Probab=27.42 E-value=1.6e+02 Score=23.97 Aligned_cols=49 Identities=14% Similarity=0.027 Sum_probs=37.5
Q ss_pred CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044 14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK 64 (68)
Q Consensus 14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p 64 (68)
++++-++..++ .+.-.+=++.-.|.|++.+.-......+..+|.|.++|
T Consensus 2095 se~m~ir~nnd--~~y~~nWTP~a~G~Y~l~~tiDG~eId~~~eVkVkd~P 2143 (3738)
T KOG1428|consen 2095 SENMLIRVNND--GTYCANWTPGAIGLYTLHVTIDGIEIDAGLEVKVKDPP 2143 (3738)
T ss_pred cccceEEecCC--CceecccCCccceeEEEEEEecceeeccceEEEeccCC
Confidence 34555544432 35567788999999999998888888899999999987
No 259
>KOG3348|consensus
Probab=27.12 E-value=99 Score=15.81 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=17.6
Q ss_pred EEEEEEEEcCCcceeEEEEEEEEc
Q psy7044 39 GVYRIKAENASGKDEADVEITVLI 62 (68)
Q Consensus 39 G~Y~c~a~n~~g~~~~~~~l~V~~ 62 (68)
+.+.|.+....|.+...+.+.|..
T Consensus 17 ~p~~v~V~D~SgGCG~~F~v~IvS 40 (85)
T KOG3348|consen 17 EPEHVEVQDVSGGCGSMFDVVIVS 40 (85)
T ss_pred CceEEEEEEcCCCccceEEEEEEc
Confidence 457777888888887777777654
No 260
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=27.01 E-value=90 Score=15.44 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=16.8
Q ss_pred CCEEEEEEEEcCCcceeEEEEE
Q psy7044 37 NSGVYRIKAENASGKDEADVEI 58 (68)
Q Consensus 37 d~G~Y~c~a~n~~g~~~~~~~l 58 (68)
..|.|.+.+.+..|..+....+
T Consensus 58 ~aG~~~V~V~~~~G~~Sn~~~f 79 (81)
T cd02849 58 PAGNYDVTVKTADGATSNGYNF 79 (81)
T ss_pred CCceEEEEEEeCCCcccCcEee
Confidence 5899999999888876655443
No 261
>PHA02811 putative host range protein; Provisional
Probab=24.20 E-value=1.3e+02 Score=17.75 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=19.7
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 28 LSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 28 l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
|.|+++++-+.-.|.|...-..-..
T Consensus 16 iaLKnv~L~kGdSYGC~I~Lk~~~~ 40 (197)
T PHA02811 16 LALKNVELLKGDSYGCTINIKVNQQ 40 (197)
T ss_pred ccccccccccCCccCeEEEEEeCCc
Confidence 6788999999999999887555543
No 262
>KOG3141|consensus
Probab=24.19 E-value=2e+02 Score=18.29 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=19.7
Q ss_pred EEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEE
Q psy7044 3 DIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKA 45 (68)
Q Consensus 3 ~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a 45 (68)
.|.++|..+. +.+-.-+....+.+...+. ..|-|.|.+
T Consensus 75 ~w~k~G~ri~----~TiL~v~d~~Vi~~~t~E~-~~g~~avqV 112 (310)
T KOG3141|consen 75 LWDKDGERIP----VTILQVDDNHVIKYITPEA-KGGYFAVQV 112 (310)
T ss_pred hhccCCCEEE----EEEEEEecceEEEEechhh-cCCeEEEEe
Confidence 4888887765 3333334444444443332 455566553
No 263
>PF03287 Pox_C7_F8A: Poxvirus C7/F8A protein; InterPro: IPR004967 This family includes Poxvirus C7 and F8A proteins.; GO: 0016032 viral reproduction
Probab=23.70 E-value=1.5e+02 Score=16.79 Aligned_cols=25 Identities=8% Similarity=0.153 Sum_probs=19.7
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044 28 LSIVDILRKNSGVYRIKAENASGKD 52 (68)
Q Consensus 28 l~I~~~~~~d~G~Y~c~a~n~~g~~ 52 (68)
+.+++++....-.|.|...-..-..
T Consensus 16 ialkn~~L~kGdsYGC~I~lk~~~~ 40 (149)
T PF03287_consen 16 IALKNVELHKGDSYGCTIKLKSKET 40 (149)
T ss_pred eeeceeecccCcccCEEEEEEeCCc
Confidence 6789999999999999887555433
No 264
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=23.63 E-value=52 Score=11.40 Aligned_cols=10 Identities=0% Similarity=-0.064 Sum_probs=6.4
Q ss_pred eEEEeCCEEe
Q psy7044 2 FDIFCPRSQV 11 (68)
Q Consensus 2 ~~W~k~g~~l 11 (68)
..|++..+||
T Consensus 6 ~~wlFEtqpl 15 (16)
T PF08043_consen 6 TRWLFETQPL 15 (16)
T ss_pred eEEEeecccC
Confidence 4577776665
No 265
>KOG0200|consensus
Probab=23.59 E-value=78 Score=21.60 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCCCEEEEEEEEc
Q psy7044 25 NTKLSIVDILRKNSGVYRIKAEN 47 (68)
Q Consensus 25 ~~~l~I~~~~~~d~G~Y~c~a~n 47 (68)
...+.+..+...+.|.|+|.+.|
T Consensus 12 ~~~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 12 HWFLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred cceEEEEEEEecCCccEEEEEec
Confidence 34678888899999999999999
No 266
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=23.33 E-value=90 Score=14.00 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=19.4
Q ss_pred CCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044 32 DILRKNSGVYRIKAENASGKDEADVEITVLIL 63 (68)
Q Consensus 32 ~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~ 63 (68)
.+...|.=.|++.+.|....... .+.|.|.
T Consensus 7 ~~~~Gd~v~Yti~v~N~g~~~a~--~v~v~D~ 36 (53)
T TIGR01451 7 VATIGDTITYTITVTNNGNVPAT--NVVVTDI 36 (53)
T ss_pred ccCCCCEEEEEEEEEECCCCceE--eEEEEEc
Confidence 45677888899999998654433 3444443
No 267
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=22.88 E-value=1.3e+02 Score=16.67 Aligned_cols=38 Identities=11% Similarity=0.201 Sum_probs=19.6
Q ss_pred CEEeccCCCEEEEEeCCeE---EEEEcCCCCCCCEEEEEEEE
Q psy7044 8 RSQVRSEGNVEIVNVPYNT---KLSIVDILRKNSGVYRIKAE 46 (68)
Q Consensus 8 g~~l~~~~~~~~~~~~~~~---~l~I~~~~~~d~G~Y~c~a~ 46 (68)
|+|+. +..+.++.....+ .-++......+.|.|...++
T Consensus 14 G~pv~-g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~e 54 (134)
T PF08400_consen 14 GKPVP-GCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVE 54 (134)
T ss_pred CCcCC-CCEEEEEEccCchheEEEEEEEEEcCCCceEEEEec
Confidence 45555 3344443333222 23445556667888877654
No 268
>smart00604 MD MD domain.
Probab=22.70 E-value=1.6e+02 Score=16.63 Aligned_cols=22 Identities=14% Similarity=0.451 Sum_probs=12.6
Q ss_pred CEEEEEEEEcCCcceeEEEEEEE
Q psy7044 38 SGVYRIKAENASGKDEADVEITV 60 (68)
Q Consensus 38 ~G~Y~c~a~n~~g~~~~~~~l~V 60 (68)
.|.|++.+.+. |..++++.|++
T Consensus 6 ~G~w~l~v~s~-~s~~C~l~vR~ 27 (145)
T smart00604 6 PGTWTITVRAN-GSNSCTISVRS 27 (145)
T ss_pred CceEEEEEecC-CCCCEEEEEEe
Confidence 58888888766 22224444443
No 269
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=22.64 E-value=1e+02 Score=14.50 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=22.6
Q ss_pred EcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044 30 IVDILRKNSGVYRIKAENASGKDEADVEITVLIL 63 (68)
Q Consensus 30 I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~ 63 (68)
...+...|.-.|++.+.|.....-.. +.+.|.
T Consensus 34 ~~~~~~Gd~v~ytitvtN~G~~~a~n--v~v~D~ 65 (76)
T PF01345_consen 34 PSTANPGDTVTYTITVTNTGPAPATN--VVVTDT 65 (76)
T ss_pred CCcccCCCEEEEEEEEEECCCCeeEe--EEEEEc
Confidence 45677889999999999976665333 444443
No 270
>smart00720 calpain_III calpain_III.
Probab=21.49 E-value=1.4e+02 Score=15.95 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=16.3
Q ss_pred CCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044 37 NSGVYRIKAENASGKDEADVEITVLI 62 (68)
Q Consensus 37 d~G~Y~c~a~n~~g~~~~~~~l~V~~ 62 (68)
+.|.|.++...-.-.....+.|.|..
T Consensus 111 ~~G~Y~iVPsT~~p~~~g~F~LrV~s 136 (143)
T smart00720 111 PPGEYVIVPSTFEPNQEGDFLLRVFS 136 (143)
T ss_pred CCCCEEEEEeecCCCCccCEEEEEEe
Confidence 44667777665555556666666654
No 271
>PF15096 G6B: G6B family
Probab=21.38 E-value=1e+02 Score=18.32 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=17.4
Q ss_pred CCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044 33 ILRKNSGVYRIKAENASGKDEADVEITVLI 62 (68)
Q Consensus 33 ~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~ 62 (68)
....|+|.|-|+-. -..++...|.|.+
T Consensus 81 Ls~GDSGTFfCkGr---~e~ESRT~LhVLG 107 (224)
T PF15096_consen 81 LSAGDSGTFFCKGR---QEEESRTVLHVLG 107 (224)
T ss_pred hhcCCccceEecCc---ccccceeeeeeec
Confidence 34789999999822 1335556666763
No 272
>PF04668 Tsg: Twisted gastrulation (Tsg) protein conserved region; InterPro: IPR006761 Tsg was identified in Drosophila melanogaster as being required to specify the dorsal-most structures in the embryo, for example the amnioserosa. Biochemical experiments have revealed three key properties of Tsg: it can synergistically inhibit Dpp/BMP action in both D. melanogaster and vertebrates by forming a tripartite complete between itself, SOG/chordin and a BMP ligand; Tsg seems to enhance the Tld/BMP-1-mediated cleavage rate of SOG/chordin and may change the preference of site utilisation; Tsg can promote the dissociation of chordin cysteine-rich-containing fragments from the ligand to inhibit BMP signalling [, ].
Probab=21.35 E-value=47 Score=18.42 Aligned_cols=8 Identities=13% Similarity=0.297 Sum_probs=6.2
Q ss_pred eEEEeCCE
Q psy7044 2 FDIFCPRS 9 (68)
Q Consensus 2 ~~W~k~g~ 9 (68)
+.||+||.
T Consensus 102 YRWFHdgC 109 (132)
T PF04668_consen 102 YRWFHDGC 109 (132)
T ss_pred ceeeccch
Confidence 57999884
No 273
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=21.28 E-value=67 Score=19.00 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=12.7
Q ss_pred CCCCCCEEEEEEEEcC
Q psy7044 33 ILRKNSGVYRIKAENA 48 (68)
Q Consensus 33 ~~~~d~G~Y~c~a~n~ 48 (68)
....++|.|.|.+.+-
T Consensus 46 l~knh~Gk~vC~LC~T 61 (222)
T COG5246 46 LSKNHTGKYVCLLCKT 61 (222)
T ss_pred hhhcCCCcEEeeeecc
Confidence 4567899999998764
No 274
>KOG0227|consensus
Probab=20.40 E-value=37 Score=20.19 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=11.5
Q ss_pred CCCCCCEEEEEEEEc
Q psy7044 33 ILRKNSGVYRIKAEN 47 (68)
Q Consensus 33 ~~~~d~G~Y~c~a~n 47 (68)
.-+.+.|.|.|.+.+
T Consensus 46 ~mkNh~G~yeCkLCl 60 (222)
T KOG0227|consen 46 FMKNHLGKYECKLCL 60 (222)
T ss_pred hhhccCcceeehhhh
Confidence 346789999998764
Done!