RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7044
(68 letters)
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 54.6 bits (132), Expect = 8e-12
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
Q++ ++++ N +KL+I+ +++ G Y + EN G +A V +TV+
Sbjct: 47 QIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 50.8 bits (122), Expect = 2e-10
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 11 VRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ + T + R +SG Y++K +N G+DEA E+ V
Sbjct: 43 AALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 49.3 bits (118), Expect = 9e-10
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 13 SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
V + ++T + R +SG Y + + + KD A + I V+
Sbjct: 66 DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 49.7 bits (118), Expect = 1e-09
Identities = 10/49 (20%), Positives = 26/49 (53%)
Query: 13 SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+EG V + + ++ +++ GVY + +N G+D+ ++ + V+
Sbjct: 90 TEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 47.1 bits (112), Expect = 2e-08
Identities = 10/52 (19%), Positives = 20/52 (38%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ N++I N P + L + + G Y A N G++ + +
Sbjct: 60 PSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA 111
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 42.0 bits (99), Expect = 6e-07
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ + ++ Y + I + + G Y + EN+ GK EA+ +T+
Sbjct: 54 VLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 41.9 bits (98), Expect = 7e-07
Identities = 8/54 (14%), Positives = 19/54 (35%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
++ + E + Y ++ I+ +G YR + D ++ V
Sbjct: 56 AGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 109
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 43.3 bits (102), Expect = 8e-07
Identities = 8/50 (16%), Positives = 17/50 (34%)
Query: 12 RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
++ N++ + L I + G Y A N G + + +
Sbjct: 144 KNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA 193
Score = 39.0 bits (91), Expect = 2e-05
Identities = 10/55 (18%), Positives = 23/55 (41%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+G +E+ ++ L I D+ +SG Y +A + G + + + +
Sbjct: 44 TEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 40.9 bits (96), Expect = 1e-06
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 21 NVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ Y+ L + + N+G Y + A+N GKDE + +
Sbjct: 57 HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM 97
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 40.4 bits (95), Expect = 2e-06
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 13 SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+G I N T L I+D+ +++ G+Y + N G D A V I +
Sbjct: 50 EQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 41.6 bits (98), Expect = 2e-06
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
++R GN ++ V L+++ + + ++G Y A N +GKD ++ V
Sbjct: 45 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96
Score = 39.7 bits (93), Expect = 1e-05
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+++ + V L + ++ ++SG Y +A NA+G + + V
Sbjct: 139 EIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK 190
Score = 36.6 bits (85), Expect = 1e-04
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
++RS +I++ + T + I+++ + G Y+ KA N G IT+
Sbjct: 232 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 41.7 bits (98), Expect = 3e-06
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
++R GN ++ V L+++ + + ++G Y A N +GKD ++ V
Sbjct: 237 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 287
Score = 39.8 bits (93), Expect = 1e-05
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+++ + V L + ++ ++SG Y +A NA+G + + V
Sbjct: 331 EIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK 382
Score = 36.7 bits (85), Expect = 1e-04
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 11 VRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
VR N+ I L N+G Y + +N +G E ++VL
Sbjct: 519 VRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 35.9 bits (83), Expect = 2e-04
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 9 SQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
++RS +I++ + T + I+++ + G Y+ KA N G D IT+
Sbjct: 423 RELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475
Score = 34.0 bits (78), Expect = 0.001
Identities = 9/51 (17%), Positives = 22/51 (43%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
++ + N++ + L I+ + + G Y A N G + ++T+
Sbjct: 141 LLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTL 191
Score = 33.2 bits (76), Expect = 0.002
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
++RS ++ L I + + G Y KAEN+ G + + +
Sbjct: 45 KLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVI 95
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 39.7 bits (93), Expect = 9e-06
Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKN-SGVYRIKAENASGKDEADVEITV 60
+++ N+ I N + T L + ++ RK +G Y+++ N G +A +++ +
Sbjct: 143 LLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI 194
Score = 36.2 bits (84), Expect = 2e-04
Identities = 8/52 (15%), Positives = 23/52 (44%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
++ ++ + L+++ +++ GVY A N G+ E ++ +
Sbjct: 47 ELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ 98
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 39.4 bits (92), Expect = 2e-05
Identities = 10/56 (17%), Positives = 22/56 (39%)
Query: 5 FCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+++ + L+I + + G Y ++A+N+ G E V + V
Sbjct: 517 HKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 37.9 bits (88), Expect = 2e-05
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
L N+G Y + A+N G + L
Sbjct: 63 SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL 100
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 39.0 bits (90), Expect = 3e-05
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ L + N+G Y + A N G+ A + +
Sbjct: 305 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 344
Score = 29.7 bits (66), Expect = 0.040
Identities = 9/53 (16%), Positives = 15/53 (28%)
Query: 16 NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENIN 68
++ +P N AEN G+ E V++ V
Sbjct: 203 VMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQL 255
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 37.6 bits (87), Expect = 4e-05
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ L + N+G Y + A N G+ A + +
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 36.9 bits (85), Expect = 5e-05
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 18 EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ + Y +L I D +G YR + D ++ +TV
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 37.9 bits (88), Expect = 5e-05
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 10 QVRSEGNVEIVNVPYNT-KLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62
+ + + T +I + +SG Y + +N G + +D ++V I
Sbjct: 157 ALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210
Score = 33.3 bits (76), Expect = 0.002
Identities = 7/51 (13%), Positives = 18/51 (35%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+R V+ L I + + G Y ++ + + V+++
Sbjct: 43 AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 93
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 37.7 bits (87), Expect = 6e-05
Identities = 7/54 (12%), Positives = 15/54 (27%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ N+ Y ++L + + G Y N+ + V
Sbjct: 356 TDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409
Score = 33.1 bits (75), Expect = 0.003
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 26 TKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ SI K++G KA N GK A
Sbjct: 474 VQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAF 508
Score = 32.3 bits (73), Expect = 0.005
Identities = 10/55 (18%), Positives = 18/55 (32%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ + + N L+I +SGV+ A N G + V+
Sbjct: 254 KLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV 308
Score = 26.2 bits (57), Expect = 0.83
Identities = 4/36 (11%), Positives = 10/36 (27%)
Query: 16 NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK 51
++ N + N+G Y ++
Sbjct: 70 ILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSN 105
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 37.4 bits (87), Expect = 6e-05
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 11 VRSEGNVEIVNVPYNTKLSIVD-ILRKNSGVYRIKAENASGKDEADVEITVL 61
+ + G+ +++ T L + + RK++G Y + A+N G D+ VE+ V
Sbjct: 145 IDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 31.3 bits (71), Expect = 0.011
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 13 SEGNVEIVNVPY-NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
I +L I + ++ VY+++A N G + V
Sbjct: 48 DGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 7e-05
Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 20/66 (30%)
Query: 2 FDIFCPRSQVRSEGNVEIVNVPYNTKLS-IVDILRKNSGVYRIKAENASGKDEADVEITV 60
R R+ VEIVN YN + V A+G A ++
Sbjct: 1826 LQYVVERVGKRTGWLVEIVN--YNVENQQYV----------------AAGDLRA-LDTVT 1866
Query: 61 LILKEN 66
+L
Sbjct: 1867 NVLNFI 1872
Score = 26.2 bits (57), Expect = 0.85
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENIN 68
LSI ++ ++ Y + N+ VEI++ +N
Sbjct: 339 LSISNLTQEQVQDY-VNKTNSHLPAGKQVEISL------VN 372
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 37.4 bits (86), Expect = 9e-05
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 19 IVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
IV N L+I + +++ G+Y +A + G + + +
Sbjct: 713 IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 754
Score = 35.1 bits (80), Expect = 5e-04
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 13 SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
++ ++ T ++V S +Y+ +A N G+ E + V
Sbjct: 500 NKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHV 547
Score = 34.3 bits (78), Expect = 0.001
Identities = 6/42 (14%), Positives = 22/42 (52%)
Query: 21 NVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62
+ L+I+++ +++G Y + N K++ +++++
Sbjct: 376 TIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVV 417
Score = 32.4 bits (73), Expect = 0.005
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
L+I + R + G+Y A + + + V
Sbjct: 292 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 325
Score = 31.3 bits (70), Expect = 0.013
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 7 PRSQVRSEGNVEIV---NVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
P +Q SE VE+ + + L+I ++ ++G Y+ V +
Sbjct: 64 PNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQD 120
Score = 30.5 bits (68), Expect = 0.021
Identities = 5/56 (8%), Positives = 18/56 (32%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62
+ + + + + + + ++ G Y A++ K V + +
Sbjct: 606 LDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTV 661
Score = 28.2 bits (62), Expect = 0.15
Identities = 5/36 (13%), Positives = 14/36 (38%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+I + +G+ +A+ ++ + I V
Sbjct: 182 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVV 217
Score = 24.7 bits (53), Expect = 3.0
Identities = 2/22 (9%), Positives = 7/22 (31%)
Query: 39 GVYRIKAENASGKDEADVEITV 60
++ A+ V + +
Sbjct: 10 ALWLCVETRAASVGLPSVSLDL 31
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 37.2 bits (86), Expect = 9e-05
Identities = 8/56 (14%), Positives = 19/56 (33%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE 65
+R V+ L I + + G Y ++ + + V+++ E
Sbjct: 148 AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDE 203
Score = 36.4 bits (84), Expect = 2e-04
Identities = 10/56 (17%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE 65
++ + + + L I + +K++G+Y + ++ GKD++ +++ KE
Sbjct: 47 EISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKE 100
Score = 35.7 bits (82), Expect = 4e-04
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62
+I + +SG Y + +N G + +D ++V I
Sbjct: 281 FTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 37.1 bits (86), Expect = 1e-04
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 12 RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ +G+ + L I ++ ++ G Y +AEN G+D I +
Sbjct: 243 KLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 292
Score = 33.7 bits (77), Expect = 0.002
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+L ++ ++SG+Y+ AEN G A E+TV
Sbjct: 345 GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 36.9 bits (85), Expect = 1e-04
Identities = 8/34 (23%), Positives = 21/34 (61%)
Query: 27 KLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
L I + +K++G+Y + ++ GKD++ +++
Sbjct: 277 TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
Score = 32.7 bits (74), Expect = 0.003
Identities = 4/39 (10%), Positives = 18/39 (46%)
Query: 27 KLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE 65
++ + + ++ G Y + ++ + + V + + K+
Sbjct: 167 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKK 205
Score = 30.7 bits (69), Expect = 0.017
Identities = 7/47 (14%), Positives = 18/47 (38%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADV 56
+E+ + TK++ D+ + G+Y + G + +
Sbjct: 42 STEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYL 88
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 36.3 bits (84), Expect = 1e-04
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 9 SQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+G +E+ ++ L I D+ +SG Y +A + G + + + +
Sbjct: 140 GDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 34.0 bits (78), Expect = 0.001
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62
NT+L++ +I+ + G Y +A N +G+DE + V +
Sbjct: 57 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 94
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 36.4 bits (84), Expect = 2e-04
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKN-SGVYRIKAENASGKDEADVEITVLI 62
S G I+N T+L+IV++ G Y A N+ G + V +
Sbjct: 134 FEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVRV 190
Score = 26.4 bits (58), Expect = 0.62
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62
N + I ++SG Y +A+ I V
Sbjct: 54 SNMEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKA 91
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 35.4 bits (82), Expect = 2e-04
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
++ + D + +SG+Y + SG D + V
Sbjct: 53 GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNV 88
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 35.4 bits (82), Expect = 2e-04
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
Q+ + + L + L ++GVY +A NA+G+ A +TVL
Sbjct: 53 QLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 36.1 bits (83), Expect = 2e-04
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 9 SQVRSEGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ + + V + L+I + ++G + A N +G + + V
Sbjct: 659 QAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNV 711
Score = 34.1 bits (78), Expect = 0.001
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE 65
L I + +++ G+Y+ N EA E+ + +
Sbjct: 391 LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD 428
Score = 33.8 bits (77), Expect = 0.002
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
G VN + L+I + + G+Y+ A++ G E ++ V
Sbjct: 479 GQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY 525
Score = 33.8 bits (77), Expect = 0.002
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ L I D + ++SG Y N+ G + + +TV
Sbjct: 304 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 340
Score = 28.4 bits (63), Expect = 0.12
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
L + +I + N G Y +A N G + V +
Sbjct: 771 EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS 807
Score = 26.8 bits (59), Expect = 0.43
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK 64
+++ + K ++ A A G K
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQK 37
Score = 24.5 bits (53), Expect = 3.8
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 8 RSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEA-DVEITVLIL 63
Q+ S+G + V + VY A N G + DV + ++
Sbjct: 87 LRQISSDGKLVFPPFRAEDYRQEVH-----AQVYACLARNQFGSIISRDVHVRAVVA 138
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 36.0 bits (83), Expect = 3e-04
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ + ++I L+I + ++G+Y+ AEN G + E++V+
Sbjct: 335 PLLTRDRIQIEQ----GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
Score = 34.4 bits (79), Expect = 0.001
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
N L I + ++++G Y AEN+ GK+ A ++T
Sbjct: 254 HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY 293
Score = 28.3 bits (63), Expect = 0.16
Identities = 9/49 (18%), Positives = 15/49 (30%)
Query: 18 EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN 66
L I + + + G Y N + T LIL+ +
Sbjct: 149 RRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRND 197
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 35.7 bits (82), Expect = 3e-04
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
L I + +K++G+Y + ++ GKD++ +++
Sbjct: 170 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 29.9 bits (67), Expect = 0.035
Identities = 4/39 (10%), Positives = 18/39 (46%)
Query: 27 KLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE 65
++ + + ++ G Y + ++ + + V + + K+
Sbjct: 62 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKK 100
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 35.6 bits (82), Expect = 3e-04
Identities = 10/49 (20%), Positives = 26/49 (53%)
Query: 13 SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
E + + + +++L+I ++ + + Y AEN +G+ +A + + V
Sbjct: 241 EEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
Score = 29.5 bits (66), Expect = 0.055
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL 63
N L I I + + G YR + + + +I V++
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN 192
Score = 27.5 bits (61), Expect = 0.23
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 21 NVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVL 61
N ++ L+I + ++G+Y+ G EA V + +
Sbjct: 57 NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 35.6 bits (82), Expect = 3e-04
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ D + VY+ N G A+ ++VL
Sbjct: 366 GDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
Score = 34.5 bits (79), Expect = 9e-04
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+N L I ++ ++SG Y A N G + + V
Sbjct: 273 FNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK 310
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 34.6 bits (80), Expect = 3e-04
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ G ++ L I +SG+Y +N++G + ++T+
Sbjct: 46 AITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 35.3 bits (81), Expect = 4e-04
Identities = 11/62 (17%), Positives = 22/62 (35%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN 66
+ R+ N P + L + +SG Y +A+N G + ++ N
Sbjct: 150 DAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELN 209
Query: 67 IN 68
+
Sbjct: 210 VG 211
Score = 32.2 bits (73), Expect = 0.006
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL 63
++ ++ + RK++G Y G++ +V I + +L
Sbjct: 64 SSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 34.2 bits (79), Expect = 4e-04
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
Q+ + EI L + DI + + G YR K N G+D + E+ V
Sbjct: 42 QLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 35.2 bits (81), Expect = 4e-04
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
QV S+G+ V+V N L + ++ GVY A + + VE+ V
Sbjct: 286 QVLSQGSNGSVSVR-NGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKV 335
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 35.3 bits (81), Expect = 4e-04
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE 65
+ +L I +I KNSG+Y +A N++ T+ + E
Sbjct: 422 QQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAE 465
Score = 32.2 bits (73), Expect = 0.006
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ L I I N+G Y N + + ++
Sbjct: 600 QQHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638
Score = 30.3 bits (68), Expect = 0.030
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE 65
+L I +I NSG Y +A N+ T+ + E
Sbjct: 244 QQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE 287
Score = 28.4 bits (63), Expect = 0.13
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKDEAD-VEITVL 61
N L++ ++ R ++ Y +N+ + +D V + VL
Sbjct: 516 SNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL 556
Score = 27.6 bits (61), Expect = 0.29
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKDEAD-VEITVL 61
N L+++ + R + G Y +N D +D V + VL
Sbjct: 338 SNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVL 378
Score = 25.7 bits (56), Expect = 1.2
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEAD-VEITVLILKENI 67
N L++ ++ R ++ Y+ + +N +D V + VL +
Sbjct: 163 NRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAP 206
Score = 24.1 bits (52), Expect = 4.2
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 20 VNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLIL 63
+ N L I +I++ ++G Y + + +EA + V
Sbjct: 65 EIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPE 109
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 35.3 bits (81), Expect = 5e-04
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL 63
+N+ L+I+ ++G Y A + +TV L
Sbjct: 120 NGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL 168
Score = 29.9 bits (67), Expect = 0.043
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG---KDEADVEITVL 61
G+ + +++ I+ R++SG+Y +A G K ++E+ VL
Sbjct: 212 GSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL 261
Score = 25.3 bits (55), Expect = 1.9
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT 59
I +SG YR + + D +EI
Sbjct: 47 TPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIH 81
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 34.3 bits (79), Expect = 5e-04
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ L + ++ + G Y EN G + V+
Sbjct: 64 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 35.1 bits (80), Expect = 5e-04
Identities = 7/43 (16%), Positives = 13/43 (30%)
Query: 18 EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
E + +S + G Y AEN + + +
Sbjct: 370 EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Score = 32.0 bits (72), Expect = 0.007
Identities = 5/54 (9%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
S + + + ++ N + I+ + +G Y + ++ + +++
Sbjct: 85 KHSSLNCQPHFDLQNR-GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137
Score = 27.7 bits (61), Expect = 0.23
Identities = 3/35 (8%), Positives = 11/35 (31%)
Query: 26 TKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ ++ + + A N+ G + +
Sbjct: 474 SSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNS 508
Score = 24.7 bits (53), Expect = 3.3
Identities = 4/37 (10%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ + R ++G Y + + +T++
Sbjct: 289 ILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIV 322
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 34.0 bits (78), Expect = 5e-04
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ +N L+I ++ ++G Y N D+ + V
Sbjct: 58 MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 34.2 bits (79), Expect = 5e-04
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+++ + N L I+D +SG YR N G+ + V
Sbjct: 48 ELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 34.8 bits (80), Expect = 6e-04
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
NT+L++ +I+ + G Y +A N +G+DE + V
Sbjct: 244 KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283
Score = 32.5 bits (74), Expect = 0.005
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 11 VRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVL 61
+ S V + ++L+I + +++G+YR +A +A G+ EA V + +
Sbjct: 45 IISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 96
Score = 27.5 bits (61), Expect = 0.25
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 22 VPYNTKLSIVDILRKNSGVYRIKAEN-ASGKDEADVEITVLILKENI 67
+ N L I++I + + G+YR + A G+ + I ++ + I
Sbjct: 149 MLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAI 195
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 35.0 bits (80), Expect = 6e-04
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 12 RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
RS I LS+ + ++SG + K E ++I VL
Sbjct: 132 RSPRGKNIQG---GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 34.9 bits (80), Expect = 7e-04
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ L I + +++ G+Y+ N EA E+ +
Sbjct: 349 GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 33.8 bits (77), Expect = 0.001
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ L I D + ++SG Y N+ G + + +TV
Sbjct: 266 KQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 305
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 34.0 bits (78), Expect = 7e-04
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
N L I ++G Y A SG+ I V
Sbjct: 61 NGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ 97
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 34.9 bits (79), Expect = 7e-04
Identities = 8/44 (18%), Positives = 16/44 (36%)
Query: 20 VNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL 63
+ L I ++G + G+ +AD T+L +
Sbjct: 207 ASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 34.0 bits (77), Expect = 8e-04
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
Y +L I ++ + G YR++ + D I V
Sbjct: 78 YTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 34.3 bits (79), Expect = 8e-04
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+++S + +I L I + ++SG Y + A N+ G+ + E+ V
Sbjct: 143 EIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 33.5 bits (77), Expect = 0.001
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 13 SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ V+I KL+I + + NSG Y +KA N SG+ + E+ V
Sbjct: 50 TLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLV 97
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 33.4 bits (77), Expect = 8e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
L I+ R ++G Y KA N G + + + V
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 34.1 bits (78), Expect = 0.001
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
++ L I + + G Y +A N G + + V
Sbjct: 359 DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 30.3 bits (68), Expect = 0.028
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEA-DVEITVL 61
E + N +L L ++ GVY + +N GK + +++TV+
Sbjct: 254 NGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 306
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 34.4 bits (79), Expect = 0.001
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
V +IV + L I+ +++ + G Y+ AEN +G ++ ++ V
Sbjct: 352 VVIPSDYFQIVG---GSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 33.3 bits (76), Expect = 0.002
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ L I ++ +SG Y + A E+TVL
Sbjct: 274 GSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL 310
Score = 26.3 bits (58), Expect = 0.65
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEA-DVEITVL 61
L I + +SGVYR A N + + E+ +L
Sbjct: 179 LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL 213
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 34.2 bits (78), Expect = 0.001
Identities = 9/55 (16%), Positives = 22/55 (40%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ ++ + + LS+ + +++G+Y A N G A + V+
Sbjct: 226 TKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280
Score = 31.5 bits (71), Expect = 0.009
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 23 PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ L+ + KN+G YR + + V
Sbjct: 48 SPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV 85
Score = 23.8 bits (51), Expect = 5.5
Identities = 5/37 (13%), Positives = 8/37 (21%), Gaps = 1/37 (2%)
Query: 25 NTKLSIVDILRKNSGVYRIKAEN-ASGKDEADVEITV 60
I +S Y K + + V
Sbjct: 143 WRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKV 179
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 34.0 bits (78), Expect = 0.001
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 19 IVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62
+ NT+L++ +I+ + G Y +A N +G+DE + V +
Sbjct: 145 YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188
Score = 26.7 bits (59), Expect = 0.43
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62
N L I++I + + G+YR + + + +I V++
Sbjct: 56 NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 93
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1;
immunoglobulin superfamily, integrin-binding, cell
adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3
b.1.1.4 PDB: 1ij9_A 1vsc_A
Length = 202
Score = 34.0 bits (77), Expect = 0.001
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 8 RSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
R+Q+ S N ++ N + L++ + N Y A S K E +++ +
Sbjct: 36 RTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI 88
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 34.0 bits (78), Expect = 0.001
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 20 VNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
++V + L+ +L ++GVY N +G A + V
Sbjct: 401 ISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 33.1 bits (76), Expect = 0.001
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 11/55 (20%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
PR+ ++ +G ++I N+ I D +G Y A ++SG+ + V
Sbjct: 54 PRATIQEQGTLQIKNL------RISD-----TGTYTCVATSSSGETSWSAVLDVT 97
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 33.9 bits (77), Expect = 0.001
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 9 SQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
S G E + L ++ L+++SG Y NAS D+ +E+ V
Sbjct: 64 SARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVF 116
Score = 29.3 bits (65), Expect = 0.056
Identities = 9/48 (18%), Positives = 23/48 (47%)
Query: 13 SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ N + ++V T L + D+ +++G YR A + ++ ++
Sbjct: 167 DKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSI 214
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 32.8 bits (75), Expect = 0.002
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
++ + D + +SG+Y + SG D + V
Sbjct: 59 GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 33.8 bits (77), Expect = 0.002
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 19 IVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
I L + ++ + G Y EN G + VL
Sbjct: 65 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 107
Score = 33.0 bits (75), Expect = 0.003
Identities = 10/54 (18%), Positives = 22/54 (40%)
Query: 8 RSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
V + +V + +L + ++ ++ G Y +A N G E ++V
Sbjct: 164 TPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH 217
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 33.5 bits (77), Expect = 0.002
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKN-SGVYRIKAENASGKDEADVEITV 60
+ + G+ +++ T L + + + +G Y + A+N G D+ VE+ V
Sbjct: 144 LIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
Score = 32.8 bits (75), Expect = 0.003
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
L I + ++ VY+++A N G + V
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 33.3 bits (76), Expect = 0.002
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
L I +I ++ G+Y +AEN GKD+ I V
Sbjct: 161 STSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 29.5 bits (66), Expect = 0.052
Identities = 9/55 (16%), Positives = 15/55 (27%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK 64
V + N L I ++ + G Y + S + LI
Sbjct: 50 PVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPI 104
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 32.7 bits (75), Expect = 0.002
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 10 QVRSEGNVEIVNVPYNT-KLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
VR + +++ L I + +++G+Y A N +G++ +E+ V
Sbjct: 49 PVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVA 101
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 32.3 bits (74), Expect = 0.002
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
L I D L ++ G Y AENA G+ +TV
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 33.2 bits (76), Expect = 0.002
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 20 VNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ V + L+ ++ +++G+Y N+ G A + V
Sbjct: 391 IAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 32.8 bits (75), Expect = 0.002
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
L I D+ +K++G Y + A N +G + + V
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 33.3 bits (76), Expect = 0.002
Identities = 7/50 (14%), Positives = 15/50 (30%)
Query: 12 RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ + L + ++ + G Y EN G + V+
Sbjct: 62 QEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 111
Score = 31.4 bits (71), Expect = 0.010
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 18 EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+N L++ ++ ++G Y K N G+ +TVL
Sbjct: 177 SGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 33.1 bits (75), Expect = 0.003
Identities = 7/43 (16%), Positives = 13/43 (30%)
Query: 18 EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
E + +S + G Y AEN + + +
Sbjct: 370 EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Score = 32.7 bits (74), Expect = 0.004
Identities = 5/54 (9%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
S + + + ++ N + I+ + +G Y + ++ + +++
Sbjct: 85 KHSSLNCQPHFDLQNR-GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137
Score = 25.0 bits (54), Expect = 1.9
Identities = 3/45 (6%), Positives = 11/45 (24%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK 51
+ + + + R ++G Y + +
Sbjct: 271 EGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315
Score = 23.5 bits (50), Expect = 6.6
Identities = 6/55 (10%), Positives = 13/55 (23%), Gaps = 2/55 (3%)
Query: 12 RSEGNVEIVNVPYNTKLSIVDILRKN--SGVYRIKAENASGKDEADVEITVLILK 64
+ E + + + R A N G++ + L
Sbjct: 175 LCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQT 229
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 33.1 bits (75), Expect = 0.003
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 12 RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ G + V +L I + + + NA G +A++ + V
Sbjct: 254 TTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 31.9 bits (73), Expect = 0.004
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
N L+I + +++ G+Y +A + G + + +
Sbjct: 63 NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 98
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 32.8 bits (74), Expect = 0.004
Identities = 10/55 (18%), Positives = 17/55 (30%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ + N L+I +SGV+ A N G + V+
Sbjct: 233 IAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 31.9 bits (73), Expect = 0.004
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 10 QVRSEGNVEIVNVPYNT-KLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
V+S+ +++ L + ++G Y A+N +G+ V++ VL
Sbjct: 45 TVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 31.9 bits (73), Expect = 0.004
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
L I D+ ++S +KA N +G+ + + V
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 32.6 bits (74), Expect = 0.004
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL 63
T ++ + R+++G Y G +V++ +++L
Sbjct: 67 PTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105
Score = 31.5 bits (71), Expect = 0.009
Identities = 10/53 (18%), Positives = 18/53 (33%)
Query: 8 RSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
R+ N V P +L + ++G Y +A N G + +
Sbjct: 153 PKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 32.5 bits (74), Expect = 0.004
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 20 VNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL 63
+ N L I + + +Y++ + GK+ + + I
Sbjct: 60 YKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ 103
Score = 26.8 bits (59), Expect = 0.41
Identities = 4/39 (10%), Positives = 14/39 (35%)
Query: 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ + ++ S ++ A N K+ + ++
Sbjct: 141 LKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 32.4 bits (74), Expect = 0.004
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 11 VRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+S G + + + L + +++G Y A NA G D + V
Sbjct: 429 AKSNGRLTVFP---DGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 32.7 bits (74), Expect = 0.004
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 10 QVRSEGNVEIVNVPYNTK-LSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ R E + + + + L + ++ + G Y EN G + VL
Sbjct: 163 EFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 215
Score = 31.9 bits (72), Expect = 0.006
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
P V + LS+ ++ +++G Y A N+ G + VL
Sbjct: 273 PYVTVLKTAGANTTDKELEV-LSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
Score = 25.0 bits (54), Expect = 2.2
Identities = 4/44 (9%), Positives = 12/44 (27%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENIN 68
+L +++ ++SG Y + +
Sbjct: 60 PQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDD 103
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 32.3 bits (73), Expect = 0.004
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 16 NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ + +S+ + + SG Y +N G D+ + + V+
Sbjct: 166 PTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211
Score = 32.0 bits (72), Expect = 0.006
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL 63
+ +++ ++ + G Y+ K + A G +TVL+
Sbjct: 83 DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 32.1 bits (73), Expect = 0.005
Identities = 9/46 (19%), Positives = 12/46 (26%), Gaps = 1/46 (2%)
Query: 16 NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEAD-VEITV 60
+ SI +SG Y + V ITV
Sbjct: 124 GKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 24.8 bits (54), Expect = 2.4
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+SG Y + S D V +TVL
Sbjct: 50 TQPSYRFKANNNDSGEYTCQTGQTSLSDP--VHLTVL 84
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric
four-helix bundle cytokine, receptor tyrosine kinase
glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 32.2 bits (73), Expect = 0.005
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 16 NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ + + ++ LS + +N+G YR A + + V
Sbjct: 41 HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYV 85
Score = 30.7 bits (69), Expect = 0.020
Identities = 8/55 (14%), Positives = 20/55 (36%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ + + + L++ + +++G Y A N GK + V+
Sbjct: 226 TKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280
Score = 23.0 bits (49), Expect = 10.0
Identities = 5/38 (13%), Positives = 9/38 (23%), Gaps = 1/38 (2%)
Query: 25 NTKLSIVDILRKNSGVYRIKAEN-ASGKDEADVEITVL 61
+I S Y+ A + + V
Sbjct: 143 WHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQ 180
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 32.5 bits (73), Expect = 0.005
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 12 RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
RS I LS+ + ++SG + K E ++I V
Sbjct: 131 RSPRGKNIQG---GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 176
Score = 31.3 bits (70), Expect = 0.012
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 21 NVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+P + L SG + E +GK +V + V+
Sbjct: 252 KLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM 292
Score = 27.5 bits (60), Expect = 0.28
Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ + V +L +G+++ ++ G+ + I VL
Sbjct: 324 AKVSKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKVL 362
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 32.3 bits (73), Expect = 0.005
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 13 SEGNVEIVNVPYNTKLSIVDILRKN-SGVYRIKAENASGKDEADVEITV 60
SE + + ++L I ++ + G YR ++ G D+A + + V
Sbjct: 133 SESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 31.8 bits (72), Expect = 0.008
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEAD-VEITVL 61
+ N +SI + ++SG Y + E++ + ITV+
Sbjct: 123 DGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 170
Score = 26.4 bits (58), Expect = 0.69
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
N+ L+IV+ ++SG Y+ + + + + +E+
Sbjct: 50 NSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFS 85
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 30.8 bits (70), Expect = 0.009
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
L + G Y I A N G+ + V
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 31.4 bits (70), Expect = 0.010
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 35 RKNSGVYRIKAENASGKDEADVEITVL 61
R G Y +A + G+ +V + VL
Sbjct: 422 RDLEGTYLCRARSTQGEVTREVTVNVL 448
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold,
transmembrane, glycoprotein, signal, complex
(immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 31.6 bits (71), Expect = 0.011
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ KL V ++SG Y N+S + +
Sbjct: 58 HQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFV 97
Score = 25.1 bits (54), Expect = 1.7
Identities = 5/39 (12%), Positives = 15/39 (38%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL 63
+L ++++ K+ G Y A + + + +
Sbjct: 161 KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI 199
Score = 23.1 bits (49), Expect = 8.8
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 3 DIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKN-SGVYRIKAENASGKDEADVEITV 60
D E T L+I +I + + A+N G D A +++
Sbjct: 254 DPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 30.9 bits (69), Expect = 0.011
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
L+I + R + G+Y A + + + V
Sbjct: 76 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 108
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 31.2 bits (70), Expect = 0.012
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 35 RKNSGVYRIKAENASGKDEADVEITVL 61
R G Y +A + G+ +V + VL
Sbjct: 237 RDLEGTYLCRARSTQGEVTREVTVNVL 263
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 31.3 bits (70), Expect = 0.012
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENIN 68
++I + +GVY +K S A +++ N++
Sbjct: 144 TQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVD 187
Score = 27.5 bits (60), Expect = 0.26
Identities = 6/37 (16%), Positives = 18/37 (48%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
L++ D +N+G Y++ ++ + E+ ++
Sbjct: 51 TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLM 87
Score = 25.9 bits (56), Expect = 1.1
Identities = 5/50 (10%), Positives = 18/50 (36%)
Query: 16 NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE 65
+E ++ + L ++ + A+ ++ VE+ ++
Sbjct: 248 ALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRK 297
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 31.0 bits (70), Expect = 0.012
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 16 NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEAD-VEITV 60
+ +N+ I K+SG Y + S ++ V IT+
Sbjct: 127 GKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 24.1 bits (52), Expect = 4.8
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ I +SG YR + ++ D +E+ +
Sbjct: 52 QASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHI 88
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 30.9 bits (70), Expect = 0.015
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 11 VRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVL 61
+ S V + ++L+I + +++G+YR +A +A G+ EA V + +
Sbjct: 43 IISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 94
Score = 28.2 bits (63), Expect = 0.15
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62
N L I++I + + G+YR + + + +I V++
Sbjct: 150 NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 187
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 31.0 bits (69), Expect = 0.018
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
L L ++G Y N + + + V+
Sbjct: 77 EKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVV 114
Score = 24.1 bits (51), Expect = 5.1
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 22 VPYNTKLSIVDILRKNSGVY----RIKAENASGKDEADVEITVL 61
+P LS + L N+G Y + + + V+
Sbjct: 173 IPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVV 216
Score = 23.3 bits (49), Expect = 8.7
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 3 DIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGV-YRIKAENASGKDEADVEITV 60
DI + S + + LSI + ++ Y A +A G+ ++
Sbjct: 273 DITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 30.4 bits (68), Expect = 0.018
Identities = 7/61 (11%), Positives = 23/61 (37%)
Query: 8 RSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI 67
+++ + + +SI ++ +++G Y +A N ++ V ++
Sbjct: 72 GARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQA 131
Query: 68 N 68
Sbjct: 132 V 132
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 30.4 bits (68), Expect = 0.021
Identities = 6/56 (10%), Positives = 16/56 (28%)
Query: 6 CPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ G +I L + + G Y + + + ++V+
Sbjct: 47 VIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV 102
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 29.7 bits (67), Expect = 0.026
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK 64
+ L + +I ++ G Y A ++S + +++ I++
Sbjct: 56 SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 30.5 bits (68), Expect = 0.026
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 20 VNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
V T I +G Y +A N G VE+ +
Sbjct: 278 VEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319
Score = 27.4 bits (60), Expect = 0.27
Identities = 3/41 (7%), Positives = 11/41 (26%)
Query: 21 NVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
V ++ +V + + + + + V
Sbjct: 189 TVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ 229
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 30.2 bits (68), Expect = 0.028
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
L+I ++ + Y KA N+ G+ E+ V
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 30.2 bits (68), Expect = 0.029
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 28 LSIVDI-LRKNSGVYRIKAENASGKDEADVEITVL 61
L I + ++ +Y A N G+ +TVL
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVL 99
Score = 27.1 bits (60), Expect = 0.40
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 12 RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDE-ADVEITV 60
+ G ++ + L I + G Y A N++G A + V
Sbjct: 153 NNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 29.7 bits (66), Expect = 0.040
Identities = 7/57 (12%), Positives = 18/57 (31%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL 63
R + + + L I ++SG Y + + + I + ++
Sbjct: 223 GRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVV 279
Score = 29.7 bits (66), Expect = 0.049
Identities = 6/56 (10%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 8 RSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEAD-VEITVLI 62
SQ + + + +++ L++ ++ ++G Y ++ G + + + + +
Sbjct: 33 MSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFV 88
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin
fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP:
b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 29.8 bits (67), Expect = 0.042
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 19 IVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVL 61
+ N ++ L+I + ++G+Y+ G EA V + +
Sbjct: 55 VWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98
Score = 29.0 bits (65), Expect = 0.067
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
N L I I + + G YR + + + +I V+
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
>3sxn_A Enhanced intracellular surviVal protein; GNAT fold,
acetyltransferase, acetyl COA binding, transferas; HET:
COA; 2.03A {Mycobacterium smegmatis}
Length = 422
Score = 29.6 bits (66), Expect = 0.053
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 16/58 (27%)
Query: 19 IVNVPY-----------NTKLSIVDILRKNSGVYRIKAENASGK-----DEADVEITV 60
I+NVP + L + D R + G + ++ + AD+EI +
Sbjct: 316 IMNVPAALEARRYQADLDVVLDVADGFRSDGGRFALQISGGRARCTTTDAPADIEIDL 373
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 29.5 bits (66), Expect = 0.053
Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDE-ADVEITVLILKENI 67
++L + K++G Y + N + ++ V + E+
Sbjct: 64 TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESF 107
Score = 28.3 bits (63), Expect = 0.12
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEAD-VEITV 60
+ + ++ G Y N ++ VEI +
Sbjct: 164 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII 200
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 29.4 bits (65), Expect = 0.055
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
L+I + R + G+Y A + + + V
Sbjct: 173 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 29.1 bits (64), Expect = 0.081
Identities = 3/34 (8%), Positives = 12/34 (35%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ + + + G+Y + + + V+
Sbjct: 203 IKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV 236
Score = 26.0 bits (56), Expect = 0.81
Identities = 6/39 (15%), Positives = 16/39 (41%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN 66
L + D+ + + G+Y + + + + +L E
Sbjct: 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEE 124
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 28.8 bits (64), Expect = 0.097
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 21 NVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
+ N L I ++ R +SG Y + + +G + + +
Sbjct: 56 EILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDL 95
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 28.1 bits (63), Expect = 0.098
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEAD-VEITV 60
+ + ++ G Y N ++ VEI +
Sbjct: 48 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII 85
>3c9h_A ABC transporter, substrate binding protein; structural genom
MCSG, PSI-2, protein structure initiative; HET: CIT;
1.90A {Agrobacterium tumefaciens str}
Length = 355
Score = 28.7 bits (64), Expect = 0.099
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 31 VDILRKNSG--VYRIKAENASGKDEADV 56
V +G RI E +GK AD
Sbjct: 63 VHYEDMLTGEIYDRIVKETDAGKKTADF 90
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 28.6 bits (64), Expect = 0.11
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDE-ADVEITVLILKE 65
V + + + L I + G Y A N++G + + V +
Sbjct: 148 PVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV 204
Score = 28.6 bits (64), Expect = 0.11
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
L + D+ K+S Y A ++ G EA +ITV
Sbjct: 259 LELTDV--KDSANYTCVAMSSLGVIEAVAQITV 289
Score = 28.6 bits (64), Expect = 0.12
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 13 SEGNVEIVNVPYNTKLSIVDILRKN-SGVYRIKAENASGKDEADVEITVL 61
+ L I + VY A+N+ G+ ++TVL
Sbjct: 50 QRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 28.3 bits (63), Expect = 0.12
Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEAD-VEITVLIL 63
G E + ++L I + ++G Y+ + + + L
Sbjct: 57 GEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL 106
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 28.3 bits (63), Expect = 0.12
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 28 LSIVDILRK-NSGVYRIKAENASGKDEADVEITV 60
L+I +I+R +Y A N+ G D + +
Sbjct: 78 LTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 28.3 bits (63), Expect = 0.12
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 16 NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG-KDEADVEITV 60
+N+ I K+SG Y + S V+IT+
Sbjct: 127 GKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITI 172
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 28.2 bits (63), Expect = 0.13
Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 9 SQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEA-DVEITVLIL 63
S +R + ++ + L I ++ ++++G YR A+N+ G + V++ V +
Sbjct: 139 SALRENSRIAVLE---SGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191
Score = 26.6 bits (59), Expect = 0.45
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 11/57 (19%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI 62
R +R G + L+I+ + + G+Y A N G E+ + V +
Sbjct: 53 TRYSIRENGQL----------LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM 99
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 27.7 bits (62), Expect = 0.15
Identities = 6/48 (12%), Positives = 12/48 (25%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVE 57
V S + L + + ++G + K V
Sbjct: 49 TVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSKASLIVR 96
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 27.8 bits (62), Expect = 0.16
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 12 RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDE-ADVEITVLIL 63
+ + + + LS+ + R ++G Y + E+ + V +TV +
Sbjct: 46 LDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGV 98
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease,
PKD, structural genomics, KIAA1329 protein; NMR {Homo
sapiens} SCOP: b.1.3.1
Length = 123
Score = 27.4 bits (60), Expect = 0.23
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 36 KNSGVYRI--KAENASGKDEADVEITV 60
++ G+YR+ +AEN +G DEA + + V
Sbjct: 91 ESPGIYRVSVRAENTAGHDEAVLFVQV 117
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 27.4 bits (61), Expect = 0.23
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEI 58
+VR + I +V KL I D+ ++ G Y + + A +
Sbjct: 47 EVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNF 95
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 27.7 bits (61), Expect = 0.24
Identities = 8/40 (20%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 23 PYNTKLSIVDILRKNSGVYRIKAENASGKDEAD-VEITVL 61
N+ L I I R+++G Y+ + N ++ +++ ++
Sbjct: 160 QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 199
Score = 23.1 bits (49), Expect = 8.4
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 20 VNVPYNTKLSIVDILRKNSGVYRIKAENASGKDE 53
+ N L I K+ GVY + + + +
Sbjct: 65 EIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRT 98
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 27.8 bits (61), Expect = 0.24
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
++V+ ++++G YR G ++ V
Sbjct: 225 FNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV 257
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 26.9 bits (60), Expect = 0.25
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 8/52 (15%)
Query: 6 CPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVE 57
+ V EG + L I K++G Y + E + VE
Sbjct: 51 SQKYDVVCEGTM--------AMLVIRGASLKDAGEYTCEVEASKSTASLHVE 94
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 27.1 bits (60), Expect = 0.37
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADV-EITVL 61
L I + ++G Y N G+ E++V E+TVL
Sbjct: 167 LMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL 201
>2ozg_A GCN5-related N-acetyltransferase; YP_325469.1, acetyltransfe (GNAT)
family, structural genomics, joint center for struct
genomics, JCSG; HET: COA; 2.00A {Anabaena variabilis}
SCOP: d.106.1.4 d.108.1.10
Length = 396
Score = 27.0 bits (59), Expect = 0.37
Identities = 7/42 (16%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 27 KLSIVD-ILRKNSGVYRIKAENASGK----DEADVEITVLIL 63
L + D +L N G + + N + + ++++ + L
Sbjct: 311 HLEVQDDLLATNQGKFILSVANGKSEVTKGGKGELQLDIKGL 352
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 26.7 bits (59), Expect = 0.55
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEAD-VEITVL 61
+ L I + ++ G Y AEN+ G + + + V
Sbjct: 162 DGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK 199
Score = 25.9 bits (57), Expect = 0.96
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 22 VPYNTKLSIVDI----LRKNSGVYRIKAENASGKD-EADVEITVLILKE 65
+ +SI+ I ++ Y AEN G AD +T+ +
Sbjct: 57 LEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDK 105
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 26.7 bits (58), Expect = 0.57
Identities = 6/41 (14%), Positives = 14/41 (34%)
Query: 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62
L I + ++SG Y + + D+ ++
Sbjct: 178 SQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCK 218
Score = 24.4 bits (52), Expect = 3.6
Identities = 4/41 (9%), Positives = 10/41 (24%), Gaps = 1/41 (2%)
Query: 21 NVPYNTKLSIVDILRKNSG-VYRIKAENASGKDEADVEITV 60
L ++ + G Y + N + +
Sbjct: 288 GGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 25.8 bits (56), Expect = 0.88
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEAD-VEITV 60
+ +R++G + Y T L + ++ + G Y+ N G + +T+
Sbjct: 60 NYAHLRAQGGE---LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 25.8 bits (56), Expect = 1.2
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENIN 68
I + ++SG YR + D + + V I+
Sbjct: 66 KALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRID 109
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 25.0 bits (55), Expect = 1.3
Identities = 7/48 (14%), Positives = 18/48 (37%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVE 57
+V + + +L + + ++SG + + E S V+
Sbjct: 49 KVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSAFFGVTVQ 96
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 25.2 bits (54), Expect = 1.5
Identities = 4/48 (8%), Positives = 14/48 (29%)
Query: 19 IVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN 66
+ + + L++ + +G + V++ V
Sbjct: 52 VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQ 99
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 25.3 bits (54), Expect = 1.6
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 10 QVRSEGNVEIVNVPYNTKLS--IVDILRKNSGVYRIKAENASGKDEADVEIT 59
+ G + N P N I + + +SG Y+ S DV +
Sbjct: 57 SSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLE 108
Score = 24.2 bits (51), Expect = 3.8
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
+ I + ++G Y +A + S ++ + ++ VL
Sbjct: 187 VVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVL 220
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 24.3 bits (53), Expect = 2.9
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVE 57
++ S V + V +L + + +G Y +A V
Sbjct: 50 KLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFRLQVA 97
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 24.2 bits (53), Expect = 3.1
Identities = 8/48 (16%), Positives = 20/48 (41%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVE 57
++R+ G + +L+I + + +S Y A + + V+
Sbjct: 47 ELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDIGQAQSRAQLLVQ 94
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 24.4 bits (53), Expect = 3.4
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 7 PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEA-DVEITVL 61
+ V IV+ L I ++ + G Y+ A+N G E+ ++ V
Sbjct: 154 KAMSFGASSRVRIVD---GGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 23.8 bits (52), Expect = 4.2
Identities = 10/52 (19%), Positives = 20/52 (38%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
V+ +++V KL I + L ++ G Y + + A V +
Sbjct: 45 PVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVISG 96
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 24.2 bits (52), Expect = 4.3
Identities = 3/32 (9%), Positives = 11/32 (34%)
Query: 29 SIVDILRKNSGVYRIKAENASGKDEADVEITV 60
S + I + ++ ++ E+ +
Sbjct: 178 STLRINTTTNEIFYCTFRRLDPEENHTAELVI 209
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 24.2 bits (51), Expect = 4.5
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 14 EGNVEIVNVPYNTKLSIVDILR 35
GN+EI ++ +N LS + +R
Sbjct: 36 MGNLEITSIEHNRDLSFLRSVR 57
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl
ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A
{Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Length = 460
Score = 23.8 bits (52), Expect = 5.0
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 4 IFCPRSQVRSE--GNVEIVNVPYNTKLSIVDILRKNSGVYRIKA----ENASGKDE 53
IFC SQV+SE +++++++ YN V Y I ++ G +
Sbjct: 183 IFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFINFSTRPDHFIGDLK 238
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 23.7 bits (51), Expect = 5.6
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62
+++ ++ + G Y+ K + A G + + VL+
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 23.3 bits (50), Expect = 7.5
Identities = 6/44 (13%), Positives = 20/44 (45%)
Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENIN 68
+ L+I ++ + Y +++ N + + + + ++ K I
Sbjct: 59 SGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIY 102
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 23.0 bits (50), Expect = 8.1
Identities = 7/48 (14%), Positives = 16/48 (33%)
Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVE 57
+ + + EI+ L + + +G +A N V+
Sbjct: 44 PLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAANLKVK 91
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 23.1 bits (50), Expect = 8.2
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 3 DIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVE 57
D F R + + +G L D+++++ G Y++ + E VE
Sbjct: 52 DSFKARYRFKKDGKR--------HILIFSDVVQEDRGRYQVITNGGQCEAELIVE 98
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 23.4 bits (49), Expect = 8.3
Identities = 4/21 (19%), Positives = 13/21 (61%)
Query: 40 VYRIKAENASGKDEADVEITV 60
++I A+ ++G+ + +T+
Sbjct: 214 NFKIAAKYSNGEVSSKESLTL 234
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 23.1 bits (50), Expect = 8.3
Identities = 5/42 (11%), Positives = 11/42 (26%)
Query: 16 NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVE 57
I L I + ++ Y + + V+
Sbjct: 54 RYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVD 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.367
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 980,043
Number of extensions: 46761
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 250
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)