RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7045
(182 letters)
>gnl|CDD|198321 cd03212, GST_C_Metaxin1_3, C-terminal, alpha helical domain of
Metaxin 1, Metaxin 3, and similar proteins. Glutathione
S-transferase (GST) C-terminal domain family, Metaxin
subfamily, Metaxin 1-like proteins; composed of metaxins
1 and 3, and similar proteins. Mammalian metaxin (or
metaxin 1) is a component of the preprotein import
complex of the mitochondrial outer membrane. Metaxin
extends to the cytosol and is anchored to the
mitochondrial membrane through its C-terminal domain. In
mice, metaxin is required for embryonic development.
Like the murine gene, the human metaxin gene is located
downstream to the glucocerebrosidase (GBA) pseudogene
and is convergently transcribed. Inherited deficiency of
GBA results in Gaucher disease, which presents many
diverse clinical phenotypes. Alterations in the metaxin
gene, in addition to GBA mutations, may be associated
with Gaucher disease. Genome sequencing shows that a
third metaxin gene also exists in zebrafish, Xenopus,
chicken, and mammals.
Length = 137
Score = 142 bits (361), Expect = 4e-44
Identities = 62/132 (46%), Positives = 90/132 (68%), Gaps = 4/132 (3%)
Query: 12 WVDDINRMEITRPWYWKQIPFPFHFYYPGKFERKAQALISVI--HPEVEDLKLKESYILA 69
WVD+ N +E+TRPWY K +PFP +FYYPG+++R+A+ + ++ E++ + E +
Sbjct: 8 WVDEKNYVEVTRPWYAKALPFPLNFYYPGRYQRRAKDRLQLLRGLSELDSEEEVEKELYK 67
Query: 70 EAEACISHLATRLDRTPGPYFFGPSPSSLDALVFAYLGPLLKAPLKNNAFQNHVRAQPNL 129
+A+ C++ L+ RL +FFG P+SLDALVF YL PLLKAPL NN QNH++ PNL
Sbjct: 68 DAKECLNLLSERLGEKK--FFFGDRPTSLDALVFGYLAPLLKAPLPNNKLQNHLKGCPNL 125
Query: 130 ARFVLCICQNHF 141
+FV I QN+F
Sbjct: 126 VQFVDRILQNYF 137
>gnl|CDD|198320 cd03211, GST_C_Metaxin2, C-terminal, alpha helical domain of
Metaxin 2. Glutathione S-transferase (GST) C-terminal
domain family, Metaxin subfamily, Metaxin 2; a metaxin 1
binding protein identified through a yeast two-hybrid
system using metaxin 1 as the bait. Metaxin 2 shares
sequence similarity with metaxin 1 but does not contain
a C-terminal mitochondrial outer membrane signal-anchor
domain. It associates with mitochondrial membranes
through its interaction with metaxin 1, which is a
component of the mitochondrial preprotein import complex
of the outer membrane. The biological function of
metaxin 2 is unknown. It is likely that it also plays a
role in protein translocation into the mitochondria.
However, this has not been experimentally validated. In
a recent proteomics study, it has been shown that
metaxin 2 is overexpressed in response to
lipopolysaccharide-induced liver injury.
Length = 126
Score = 64.6 bits (158), Expect = 7e-14
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 12 WVDDINRMEITRPWYWKQIPFPFHFYYPGKFERKAQALISVIHPEVEDLKLKESYILAEA 71
W D+ E+T+P Y P+P + + +R+ + + + E
Sbjct: 7 WCDEETYNEVTKPRYGSVYPWPLNHILAYRKQREVLRKLKAL----GWSDKSLDQVFDEV 62
Query: 72 EACISHLATRLDRTPGPYFFGPSPSSLDALVFAYLGPLLKAPLKNNAFQNHVRAQPNLAR 131
E C L+ +L YFFG P+ LDALVF +L +L PL N+ V+ PNL
Sbjct: 63 EKCCQALSEKLGTNQ--YFFGDQPTELDALVFGHLFTILTTPLPNDELAAIVKKYPNLVE 120
Query: 132 FVLCI 136
F I
Sbjct: 121 FCRRI 125
>gnl|CDD|221231 pfam11801, Tom37_C, Tom37 C-terminal domain. The TOM37 protein is
one of the outer membrane proteins that make up the TOM
complex for guiding cytosolic mitochondrial beta-barrel
proteins from the cytosol across the outer mitochondrial
membrane into the intramembrane space. In conjunction
with TOM70 it guides peptides without an MTS into TOM40,
the protein that forms the passage through the outer
membrane. It has homology with Metaxin-1, also part of
the outer mitochondrial membrane beta-barrel protein
transport complex.
Length = 155
Score = 61.6 bits (150), Expect = 2e-12
Identities = 40/138 (28%), Positives = 56/138 (40%), Gaps = 26/138 (18%)
Query: 12 WVDDINRMEITRPWYWKQIPFPFHFYYPGKFERKAQAL---------------------- 49
+V+ N + TR + K +PFP + P + +A+
Sbjct: 19 YVNSKNYEKYTRKLFSKLLPFPMMYNTPLRLRSQAKERVELLGLDSRTSADDASEEAAEV 78
Query: 50 -ISVIHPEVEDLKLKESYILAEAEACISHLATRLDRTPGP--YFFGPSPSSLDALVFAYL 106
S+ H K KE +L E EA T L+ G + FG SPSS D L FAYL
Sbjct: 79 AQSLTHERQLTAKQKEKELLRE-EALNLECLTLLEELLGQWGFLFGDSPSSSDLLFFAYL 137
Query: 107 GPLLKAPLKNNAFQNHVR 124
LL L + +NH+R
Sbjct: 138 YLLLVPKLPDGFIRNHLR 155
>gnl|CDD|198302 cd03193, GST_C_Metaxin, C-terminal, alpha helical domain of Metaxin
and related proteins. Glutathione S-transferase (GST)
C-terminal domain family, Metaxin subfamily; composed of
metaxins and related proteins. Metaxin 1 is a component
of a preprotein import complex of the mitochondrial
outer membrane. It extends to the cytosol and is
anchored to the mitochondrial membrane through its
C-terminal domain. In mice, metaxin is required for
embryonic development. In humans, alterations in the
metaxin gene may be associated with Gaucher disease.
Metaxin 2 binds to metaxin 1 and may also play a role in
protein translocation into the mitochondria. Genome
sequencing shows that a third metaxin gene also exists
in zebrafish, Xenopus, chicken, and mammals. Sequence
analysis suggests that all three metaxins share a common
ancestry and that they possess similarity to GSTs. Also
included in the subfamily are uncharacterized proteins
with similarity to metaxins, including a novel GST from
Rhodococcus with toluene o-monooxygenase and
glutamylcysteine synthetase activities. Other members
are the cadmium-inducible lysosomal protein CDR-1 and
its homologs from C. elegans, and the failed axon
connections (fax) protein from Drosophila. CDR-1 is an
integral membrane protein that functions to protect
against cadmium toxicity and may also have a role in
osmoregulation to maintain salt balance in C. elegans.
The fax gene of Drosophila was identified as a genetic
modifier of Abelson (Abl) tyrosine kinase. The fax
protein is localized in cellular membranes and is
expressed in embryonic mesoderm and axons of the central
nervous system.
Length = 88
Score = 51.5 bits (124), Expect = 3e-09
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 67 ILAEAEACISHLATRLDRTPGPYFFGPSPSSLDALVFAYLGPLLKAPLKNNAFQNHVRAQ 126
I A + L+T L + FG P+S+DA VFA+L +L P + + V +
Sbjct: 20 IYELALEDLEALSTLLGDKK--FLFGDKPTSVDATVFAHLASILYPPEDSPLLRVLVASS 77
Query: 127 PNLARFV 133
PNL +
Sbjct: 78 PNLVEYC 84
>gnl|CDD|221307 pfam11907, DUF3427, Domain of unknown function (DUF3427). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and archaea. This domain is
typically between 243 to 275 amino acids in length. This
domain is found associated with pfam04851, pfam00271.
Length = 266
Score = 31.5 bits (72), Expect = 0.17
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 47 QALISVIHPEVEDL-KLKESYILAEAEACISHLATRLDRTPGPYFFGPSPSSLDALVFAY 105
+ L+ +EDL KL E+Y + E I +A L + F+ + L L
Sbjct: 20 KELLKNDFISIEDLKKLLEAYNIDVDEETIQSVARMLSLS----FWDKAGYPLLELGGYS 75
Query: 106 LGPLLKAPLKNNAFQNHVR 124
L L+N AF+ +R
Sbjct: 76 LSEEFLELLENPAFKKELR 94
>gnl|CDD|222111 pfam13410, GST_C_2, Glutathione S-transferase, C-terminal domain.
This domain is closely related to pfam00043.
Length = 69
Score = 29.3 bits (66), Expect = 0.21
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 67 ILAEAEACISHLATRLDRTPGPYFFGPSPSSLDALVFAYLGPLLKAPLKNNAFQNHVRAQ 126
LA+ E + L RL GPY G PS D + L L + +
Sbjct: 7 ALAQLERALDALEERLAD--GPYLLGDRPSLADIALAPALARLDFRGPGLDLRAGY---- 60
Query: 127 PNLARFV 133
PNL ++
Sbjct: 61 PNLRAWL 67
>gnl|CDD|234789 PRK00549, PRK00549, competence damage-inducible protein A;
Provisional.
Length = 414
Score = 29.4 bits (67), Expect = 1.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 69 AEAEACISHLATRLDRTPGPYFFGPSPSSLDALVFAYL 106
EAE I L + G YF+G SL+ +V L
Sbjct: 230 EEAEKLIDPLEEEIRDRVGDYFYGYDEDSLEEVVAKLL 267
>gnl|CDD|221234 pfam11805, DUF3326, Protein of unknown function (DUF3326). This
protein is functionally uncharacterized. It is about
300-500 amino acids in length. This family is found in
plants and bacteria.
Length = 339
Score = 29.1 bits (66), Expect = 1.3
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 43 ERKAQALISVIH-PEVEDLKLKESY-------ILAEAEACISHLATRLDRTP 86
+ A A+ V P+ D + ++Y LA AEA ISHL R + P
Sbjct: 153 KAGATAIAVVARFPDDPDSEALQAYRQGKGVDPLAGAEAVISHLLVRELQIP 204
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 28.9 bits (65), Expect = 1.4
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 57 VEDLKLKESYILAEA-EACISHLATRLDRTPGPYFFGPSPSSLDALVFAYLGPLLK 111
V++L L E AE E + T + F SP+SL L A L +
Sbjct: 317 VKEL-LHEGPYTAEEIEEILGESLTSI--------FKNSPTSLAVLKAAKHFKLHQ 363
>gnl|CDD|198286 cd00299, GST_C_family, C-terminal, alpha helical domain of the
Glutathione S-transferase family. Glutathione
S-transferase (GST) family, C-terminal alpha helical
domain; a large, diverse group of cytosolic dimeric
proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
In addition, GSTs also show GSH peroxidase activity and
are involved in the synthesis of prostaglandins and
leukotrienes. This family, also referred to as soluble
GSTs, is the largest family of GSH transferases and is
only distantly related to the mitochondrial GSTs (GSTK).
Soluble GSTs bear no structural similarity to microsomal
GSTs (MAPEG family) and display additional activities
unique to their group, such as catalyzing thiolysis,
reduction and isomerization of certain compounds. The
GST fold contains an N-terminal thioredoxin-fold domain
and a C-terminal alpha helical domain, with an active
site located in a cleft between the two domains. GSH
binds to the N-terminal domain while the hydrophobic
substrate occupies a pocket in the C-terminal domain.
Based on sequence similarity, different classes of GSTs
have been identified, which display varying tissue
distribution, substrate specificities and additional
specific activities. In humans, GSTs display
polymorphisms which may influence individual
susceptibility to diseases such as cancer, arthritis,
allergy and sclerosis. Some GST family members with
non-GST functions include glutaredoxin 2, the CLIC
subfamily of anion channels, prion protein Ure2p,
crystallins, metaxins, stringent starvation protein A,
and aminoacyl-tRNA synthetases.
Length = 100
Score = 27.8 bits (62), Expect = 1.5
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 42 FERKAQALISVIHPEVEDLKLKESYILAEAEACISHLATRLDR--TPGPYFFGPSPSSLD 99
+ + + + K+ + A + L L++ PY G S D
Sbjct: 8 ADATLAPPLVRLLYLEKVPLPKDEAAVEAAREELPALLAALEQLLAGRPYLAGDQFSLAD 67
Query: 100 ALVFAYL 106
+ L
Sbjct: 68 VALAPVL 74
>gnl|CDD|198322 cd10289, GST_C_AaRS_like, Glutathione S-transferase
C-terminal-like, alpha helical domain of various
Aminoacyl-tRNA synthetases and similar domains.
Glutathione S-transferase (GST) C-terminal domain
family, Aminoacyl-tRNA synthetase (AaRS)-like subfamily;
This model characterizes the GST_C-like domain found in
the N-terminal region of some eukaryotic AaRSs, as well
as similar domains found in proteins involved in protein
synthesis including Aminoacyl tRNA synthetase
complex-Interacting Multifunctional Protein 2 (AIMP2),
AIMP3, and eukaryotic translation Elongation Factor 1
beta (eEF1b). AaRSs comprise a family of enzymes that
catalyze the coupling of amino acids with their matching
tRNAs. This involves the formation of an aminoacyl
adenylate using ATP, followed by the transfer of the
activated amino acid to the 3'-adenosine moiety of the
tRNA. AaRSs may also be involved in translational and
transcriptional regulation, as well as in tRNA
processing. AaRSs in this subfamily include GluRS from
lower eukaryotes, as well as GluProRS, MetRS, and CysRS
from higher eukaryotes. AIMPs are non-enzymatic
cofactors that play critical roles in the assembly and
formation of a macromolecular multi-tRNA synthetase
protein complex found in higher eukaryotes. The
GST_C-like domain is involved in protein-protein
interactions, mediating the formation of aaRS complexes
such as the MetRS-Arc1p-GluRS ternary complex in lower
eukaryotes and the multi-aaRS complex in higher
eukaryotes, that act as molecular hubs for protein
synthesis. AaRSs from prokaryotes, which are active as
dimers, do not contain this GST_C-like domain.
Length = 82
Score = 27.3 bits (61), Expect = 1.6
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 76 SHLATRLDRTPGPYFFGPSPSSLDALVFAYLGPLLK--APLKNNAFQNHVR 124
S+LA+R + G S + D VF+ L P + + + F + R
Sbjct: 30 SYLASR------TFLVGYSLTLADVAVFSALYPSGQKLSDKEKKKFPHVTR 74
>gnl|CDD|226775 COG4325, COG4325, Predicted membrane protein [Function unknown].
Length = 464
Score = 28.7 bits (64), Expect = 2.0
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 80 TRLDRTPGPYFFGPSPSSLDALVFAYLGPLLKAPLKNNAFQNHVRAQPNLARFVL 134
LD G + P+ + AL F ++ ++ L + + P AR VL
Sbjct: 29 AILDYLQGAVWVIPAFGVVIALGFGFVLSMIPRTLGVAIDKLMFQGTPGDARGVL 83
>gnl|CDD|188463 TIGR03948, butyr_acet_CoA, butyryl-CoA:acetate CoA-transferase.
This enzyme represents one of at least two mechanisms
for reclaiming CoA from butyryl-CoA at the end of
butyrate biosynthesis (an important process performed by
some colonic bacteria), namely transfer of CoA to
acetate. An alternate mechanism transfers the butyrate
onto inorganic phosphate, after which butyrate kinase
transfers the phosphate onto ADP, creating ATP [Energy
metabolism, Fermentation].
Length = 445
Score = 28.3 bits (63), Expect = 2.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 44 RKAQALISVIHPEVEDLKLKES 65
+KA+ALIS+ HP+ D +KE+
Sbjct: 413 QKAEALISIAHPDFRDELIKEA 434
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 27.6 bits (62), Expect = 4.4
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 11 RWVDDINRMEITRPWYWKQIPFPFHFYYPGKFERKAQALISVIH 54
+ V +++ + + P FP Y+PG RK + I
Sbjct: 175 KAVQELSSLLSS-PSPQLLDLFPILKYFPGPHGRKLKRARKKIK 217
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 27.6 bits (62), Expect = 4.6
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 138 QNHFKKTYQGKSKALLPVLYVPLTLPRA 165
QN+FKK Y+G+ +A+ YV L +P+
Sbjct: 150 QNYFKKLYEGELRAVHKPQYVDL-IPKV 176
>gnl|CDD|198297 cd03188, GST_C_Beta, C-terminal, alpha helical domain of Class Beta
Glutathione S-transferases. Glutathione S-transferase
(GST) C-terminal domain family, Class Beta subfamily;
GSTs are cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins, and products of
oxidative stress. The GST fold contains an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain, with an active site located in a cleft between
the two domains. GSH binds to the N-terminal domain
while the hydrophobic substrate occupies a pocket in the
C-terminal domain. Unlike mammalian GSTs which detoxify
a broad range of compounds, the bacterial class Beta
GSTs exhibit GSH conjugating activity with a narrow
range of substrates. In addition to GSH conjugation,
they are involved in the protection against oxidative
stress and are able to bind antibiotics and reduce the
antimicrobial activity of beta-lactam drugs,
contributing to antibiotic resistance. The structure of
the Proteus mirabilis enzyme reveals that the cysteine
in the active site forms a covalent bond with GSH. One
member of this subfamily is a GST from Burkholderia
xenovorans LB400 that is encoded by the bphK gene and is
part of the biphenyl catabolic pathway.
Length = 113
Score = 26.1 bits (58), Expect = 6.0
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 72 EACISHLATRLDRTPGPYFFGPSPSSLDALVFAYLG-----PLLKAPLKN-NAFQNHVRA 125
E +++L +L GPY G S DA +F L L + + A+ V A
Sbjct: 48 ERRLAYLDAQLAG--GPYLLGDQFSVADAYLFVVLRWARAVGLDLSDWPHLAAYLARVAA 105
Query: 126 QPNLAR 131
+P +
Sbjct: 106 RPAVQA 111
>gnl|CDD|184514 PRK14110, PRK14110, F0F1 ATP synthase subunit gamma; Provisional.
Length = 291
Score = 27.0 bits (60), Expect = 6.1
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 11/47 (23%)
Query: 44 RKAQALISVIHPEVEDLKLKESYILAEAEACISHLATRLDRTPGPYF 90
RKAQ L+ P E L Y L IS LA +DR P
Sbjct: 35 RKAQELLYASRPYSEKL-----YEL------ISDLAAHIDRESHPLL 70
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional.
Length = 737
Score = 26.8 bits (60), Expect = 7.4
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 49 LISVIHPEVEDLKLKESYILAEAEACISHLAT 80
L++ + E+++L E YI A+ E S LAT
Sbjct: 392 LLAKSYDELDELF--ERYIWADPEDVRSKLAT 421
>gnl|CDD|198341 cd10308, GST_C_eEF1b_like, Glutathione S-transferase
C-terminal-like, alpha helical domain of eukaryotic
translation Elongation Factor 1 beta. Glutathione
S-transferase (GST) C-terminal domain family, eukaryotic
translation Elongation Factor 1 beta (eEF1b) subfamily;
eEF1b is a component of the eukaryotic translation
elongation factor-1 (EF1) complex which plays a central
role in the elongation cycle during protein
biosynthesis. EF1 consists of two functionally distinct
units, EF1A and EF1B. EF1A catalyzes the GTP-dependent
binding of aminoacyl-tRNA to the ribosomal A site
concomitant with the hydrolysis of GTP. The resulting
inactive EF1A:GDP complex is recycled to the active GTP
form by the guanine-nucleotide exchange factor EF1B, a
complex composed of at least two subunits, alpha and
gamma. Metazoan EFB1 contain a third subunit, beta.
eEF1b contains a GST_C-like alpha helical domain at the
N-terminal region and a C-terminal guanine nucleotide
exchange domain. The GST_C-like domain likely functions
as a protein-protein interaction domain, similar to the
function of the GST_C-like domains of EF1Bgamma and
various aminoacyl-tRNA synthetases (aaRSs) from higher
eukaryotes.
Length = 82
Score = 25.5 bits (56), Expect = 7.6
Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 20/91 (21%)
Query: 41 KFERKAQALISVIHPEVEDLKLKESYILAEAEACISHLATRLDRTPGPYFFGPSPSSLDA 100
L+ + + LK EA +LA R Y G SPS D
Sbjct: 4 LATESKHKLLLGVSLDGSFADLKTD---KGLEALNEYLADR------SYISGYSPSQADV 54
Query: 101 LVFAYLGPLLKAPLKNNAFQNHVRAQPNLAR 131
VF L KAP +A + P+LAR
Sbjct: 55 EVFDKLK---KAP---DATKF-----PHLAR 74
>gnl|CDD|201501 pfam00912, Transgly, Transglycosylase. The penicillin-binding
proteins are bifunctional proteins consisting of
transglycosylase and transpeptidase in the N- and
C-terminus respectively. The transglycosylase domain
catalyzes the polymerisation of murein glycan chains.
Length = 177
Score = 26.0 bits (58), Expect = 9.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 89 YFFGPSPSSLDALVFAYLGPLLKAPLKNNAFQNHVRA 125
+FG PS L A L L AP + N +N RA
Sbjct: 129 AYFGKPPSDLTLAEAALLAGLPPAPSRYNPLRNPERA 165
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.448
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,469,758
Number of extensions: 856090
Number of successful extensions: 886
Number of sequences better than 10.0: 1
Number of HSP's gapped: 882
Number of HSP's successfully gapped: 26
Length of query: 182
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 91
Effective length of database: 6,901,388
Effective search space: 628026308
Effective search space used: 628026308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (25.4 bits)