RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7045
         (182 letters)



>d2i9ia1 c.51.6.1 (A:51-271) Hypothetical protein HP0492
          {Helicobacter pylori [TaxId: 210]}
          Length = 221

 Score = 26.4 bits (58), Expect = 1.8
 Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 29 QIPFPFHFYYP--GKFERKAQALISVIHPEVEDLKLKESYI 67
          +   P  F YP       +   ++ ++ P ++     + YI
Sbjct: 8  EHVTPLDFNYPIHIVQAPQNHHVVGILTPRIQVSDNLKPYI 48


>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase
           oxygenase subunit TouA {Pseudomonas stutzeri [TaxId:
           316]}
          Length = 491

 Score = 25.6 bits (56), Expect = 3.7
 Identities = 5/27 (18%), Positives = 14/27 (51%)

Query: 4   VTQQVQGRWVDDINRMEITRPWYWKQI 30
           + + +  ++   +  + + +PWYW Q 
Sbjct: 293 MLEWIVAQFERQLLDLGLDKPWYWDQF 319


>d2d3qa1 d.58.4.14 (A:4-442) Decolorizing peroxidase DyP {Geotrichum
           candidum [TaxId: 27317]}
          Length = 439

 Score = 25.5 bits (55), Expect = 4.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 87  GPYFFGPSPSSLDALVFA 104
           G YFF PS S+L A + A
Sbjct: 422 GEYFFLPSISALTATIAA 439


>d1oe8a1 a.45.1.1 (A:85-207) Class alpha GST {Blood fluke
           (Schistosoma haematobium) [TaxId: 6185]}
          Length = 123

 Score = 24.6 bits (53), Expect = 5.8
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 19/94 (20%)

Query: 54  HPEVEDLKLKESYILAEAEACISHLATRLDRTPGPYFFGPSPSSLDALVFAYLG------ 107
            PE E  K+ +  +  +    +  +   L  + G    G   +  D ++ A +       
Sbjct: 31  KPEEEKQKIIKEILNGKVPVLLDIICESLKASTGKLAVGDKVTLADLVLIAVIDHVTDLD 90

Query: 108 --------PLLKAPLKNNAFQNHVRAQPNLARFV 133
                   P +    + N   +     P LA+++
Sbjct: 91  KEFLTGKYPEIHK-HRENLLASS----PRLAKYL 119


>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase
           MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 177

 Score = 24.4 bits (52), Expect = 7.5
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 60  LKLKESYILAEAEACISHLATRLDRTPGPYFFGPSPSSLDALVFAYLGPLLKAPLKNNAF 119
           L LK+ Y   E +  +  L  R+ +    + FG   S      FA    L+    K+   
Sbjct: 12  LILKKFYTNDEWKNKLDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMR--LMHLGFKSYFV 69

Query: 120 QNHVRAQPNLARFVLCICQNHF 141
                        ++ I  +  
Sbjct: 70  GETTTPSYEKDDLLILISGSGR 91


>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome
           remodeling ATPase ISWI {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 128

 Score = 23.9 bits (52), Expect = 7.9
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 9/54 (16%)

Query: 15  DINRMEITRPWYWKQIPFPFHFYY----PGKFERKAQALISVIHPEVEDLKLKE 64
           +  R  I     ++     F ++       + +R+   LI++I  E  +L+ KE
Sbjct: 76  EELRAAIRASPQFR-----FDWFIKSRTALELQRRCNTLITLIERENIELEEKE 124


>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit
           {Methylococcus capsulatus [TaxId: 414]}
          Length = 512

 Score = 24.4 bits (53), Expect = 9.2
 Identities = 5/26 (19%), Positives = 10/26 (38%)

Query: 4   VTQQVQGRWVDDINRMEITRPWYWKQ 29
           V +   G W+  + +  +  P   K 
Sbjct: 295 VYEDWGGIWIGRLGKYGVESPRSLKD 320


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.448 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 712,484
Number of extensions: 31471
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 9
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.3 bits)