BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7047
(469 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FO8|A Chain A, Crystal Structure Of N-Acetylglucosaminyltransferase I
Length = 343
Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/332 (56%), Positives = 238/332 (71%), Gaps = 23/332 (6%)
Query: 100 IAIVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQP 159
I I+VIAC+R TV RCLD L+ YRPS E FPIIVSQDC HE T VI SY + V I+QP
Sbjct: 4 IPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQP 63
Query: 160 NQQDIAVPPKEKKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGT 219
+ +IAV P +KF+GY+KIARHY WAL Q+F+ FN+ A+V+EDDL++APDFFEYF T
Sbjct: 64 DLSNIAVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQAT 123
Query: 220 YPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRTDFFPGLGWMLTKDLWDEISVKWPR 279
YPLL +DP+LWCVSAWNDNGK ++D+S +LLYRTDFFPGLGW+L +LW E+ KWP+
Sbjct: 124 YPLLKADPSLWCVSAWNDNGKEQMVDSSKPELLYRTDFFPGLGWLLLAELWAELEPKWPK 183
Query: 280 SYWDDWIRQPEQRKDRACIRPEISRTRTFSAGSISPVVTKLPMKVSFYTRTFGKIGVSNG 339
++WDDW+R+PEQRK RAC+RPEISR T TFG+ GVS+G
Sbjct: 184 AFWDDWMRRPEQRKGRACVRPEISR-----------------------TMTFGRKGVSHG 220
Query: 340 MYFDKHLKFIHLNDHFVPFTKLNLTYLLRENYDVEYVKLVYSLPTVTYDDLKMNTIKHDG 399
+FD+HLKFI LN FVPFT+L+L+YL +E YD +++ VY P + + ++ N K G
Sbjct: 221 QFFDQHLKFIKLNQQFVPFTQLDLSYLQQEAYDRDFLARVYGAPQLQVEKVRTNDRKELG 280
Query: 400 AVRIAYYTKDQFRRNAKFLGLMDDFRSGVPRT 431
VR+ Y +D F+ AK LG+MDD +SGVPR
Sbjct: 281 EVRVQYTGRDSFKAFAKALGVMDDLKSGVPRA 312
>pdb|2AM3|A Chain A, Crystal Structure Of N-Acetylglucosaminyltransferase I In
Complex With Udp-Glucose
pdb|2AM4|A Chain A, Crystal Structure Of N-acetylglucosaminyltransferase I In
Complex With Udp-2-deoxy-2-fluoro-glucose
pdb|2AM5|A Chain A, Crystal Structure Of N-Acetylglucosaminyltransferase I In
Complex With Udp
pdb|2APC|A Chain A, Crystal Structure Of N-acetylglucosaminyltransferase I In
Complex With Udp-glcnac Phosphonate
Length = 342
Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/332 (56%), Positives = 238/332 (71%), Gaps = 23/332 (6%)
Query: 100 IAIVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQP 159
I I+VIAC+R TV RCLD L+ YRPS E FPIIVSQDC HE T VI SY + V I+QP
Sbjct: 3 IPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQP 62
Query: 160 NQQDIAVPPKEKKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGT 219
+ +IAV P +KF+GY+KIARHY WAL Q+F+ FN+ A+V+EDDL++APDFFEYF T
Sbjct: 63 DLSNIAVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQAT 122
Query: 220 YPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRTDFFPGLGWMLTKDLWDEISVKWPR 279
YPLL +DP+LWCVSAWNDNGK ++D+S +LLYRTDFFPGLGW+L +LW E+ KWP+
Sbjct: 123 YPLLKADPSLWCVSAWNDNGKEQMVDSSKPELLYRTDFFPGLGWLLLAELWAELEPKWPK 182
Query: 280 SYWDDWIRQPEQRKDRACIRPEISRTRTFSAGSISPVVTKLPMKVSFYTRTFGKIGVSNG 339
++WDDW+R+PEQRK RAC+RPEISR T TFG+ GVS+G
Sbjct: 183 AFWDDWMRRPEQRKGRACVRPEISR-----------------------TMTFGRKGVSHG 219
Query: 340 MYFDKHLKFIHLNDHFVPFTKLNLTYLLRENYDVEYVKLVYSLPTVTYDDLKMNTIKHDG 399
+FD+HLKFI LN FVPFT+L+L+YL +E YD +++ VY P + + ++ N K G
Sbjct: 220 QFFDQHLKFIKLNQQFVPFTQLDLSYLQQEAYDRDFLARVYGAPQLQVEKVRTNDRKELG 279
Query: 400 AVRIAYYTKDQFRRNAKFLGLMDDFRSGVPRT 431
VR+ Y +D F+ AK LG+MDD +SGVPR
Sbjct: 280 EVRVQYTGRDSFKAFAKALGVMDDLKSGVPRA 311
>pdb|1FOA|A Chain A, Crystal Structure Of N-acetylglucosaminyltransferase I
pdb|1FO9|A Chain A, Crystal Structure Of N-Acetylglucosaminyltransferase I
Length = 348
Score = 387 bits (993), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/332 (56%), Positives = 238/332 (71%), Gaps = 23/332 (6%)
Query: 100 IAIVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQP 159
I I+VIAC+R TV RCLD L+ YRPS E FPIIVSQDC HE T VI SY + V I+QP
Sbjct: 9 IPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQP 68
Query: 160 NQQDIAVPPKEKKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGT 219
+ +IAV P +KF+GY+KIARHY WAL Q+F+ FN+ A+V+EDDL++APDFFEYF T
Sbjct: 69 DLSNIAVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQAT 128
Query: 220 YPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRTDFFPGLGWMLTKDLWDEISVKWPR 279
YPLL +DP+LWCVSAWNDNGK ++D+S +LLYRTDFFPGLGW+L +LW E+ KWP+
Sbjct: 129 YPLLKADPSLWCVSAWNDNGKEQMVDSSKPELLYRTDFFPGLGWLLLAELWAELEPKWPK 188
Query: 280 SYWDDWIRQPEQRKDRACIRPEISRTRTFSAGSISPVVTKLPMKVSFYTRTFGKIGVSNG 339
++WDDW+R+PEQRK RAC+RPEISR T TFG+ GVS+G
Sbjct: 189 AFWDDWMRRPEQRKGRACVRPEISR-----------------------TMTFGRKGVSHG 225
Query: 340 MYFDKHLKFIHLNDHFVPFTKLNLTYLLRENYDVEYVKLVYSLPTVTYDDLKMNTIKHDG 399
+FD+HLKFI LN FVPFT+L+L+YL +E YD +++ VY P + + ++ N K G
Sbjct: 226 QFFDQHLKFIKLNQQFVPFTQLDLSYLQQEAYDRDFLARVYGAPQLQVEKVRTNDRKELG 285
Query: 400 AVRIAYYTKDQFRRNAKFLGLMDDFRSGVPRT 431
VR+ Y +D F+ AK LG+MDD +SGVPR
Sbjct: 286 EVRVQYTGRDSFKAFAKALGVMDDLKSGVPRA 317
>pdb|2K4J|A Chain A, Arsr Dna Binding Domain
Length = 115
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 71 QKKRALEKAEQENMQVVINNEKFHYSKDAIAIVVIACNRVTVSRCLDLLI-KYRPSVEKF 129
+KK L +AE E + ++I+ + + +S+++IAI + N + ++ +D++I + R +EK
Sbjct: 37 EKKLDLTRAEYEILSLLISKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEKN 96
Query: 130 P 130
P
Sbjct: 97 P 97
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 21 SHYVFLGRSNNEFSNNIGDV-DKALSDLSADINSELEIHNLMMESVQQSIVQKKRALEKA 79
SH + R+N + +N++G++ ++LS ++ + ++ E+ + + Q ALE A
Sbjct: 361 SHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETA 420
Query: 80 EQENMQVVINNEKFHYSKDAIAIVVIACNR 109
+ ++++ H + AI VV NR
Sbjct: 421 RK-----AMDDQALHLALGAIFAVVAEANR 445
>pdb|2XRG|A Chain A, Crystal Structure Of Autotaxin (Enpp2) In Complex With The
Ha155 Boronic Acid Inhibitor
Length = 862
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 239 GKPTLIDTSSSDLLYRTDFFPGLGWMLTKDLWDEISVKWPRSYWDDWIRQPEQRKDRACI 298
G+P ++ +S D+LY TDF G + LW ++ S + PE + C+
Sbjct: 599 GRPAVLYRTSYDILYHTDFESGYSEIFLMPLWTSYTI----SKQAEVSSIPEHLTN--CV 652
Query: 299 RPEISRTRTFSAGSIS 314
RP++ + FS ++
Sbjct: 653 RPDVRVSPGFSQNCLA 668
>pdb|3NKM|A Chain A, Crystal Structure Of Mouse Autotaxin
pdb|3NKN|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
14:0-Lpa
pdb|3NKO|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
16:0-Lpa
pdb|3NKP|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:1-Lpa
pdb|3NKQ|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:3-Lpa
pdb|3NKR|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
22:6-Lpa
Length = 831
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 239 GKPTLIDTSSSDLLYRTDFFPGLGWMLTKDLWDEISVKWPRSYWDDWIRQPEQRKDRACI 298
G+P ++ +S D+LY TDF G + LW ++ S + PE + C+
Sbjct: 560 GRPAVLYRTSYDILYHTDFESGYSEIFLMPLWTSYTI----SKQAEVSSIPEHLTN--CV 613
Query: 299 RPEISRTRTFSAGSIS 314
RP++ + FS ++
Sbjct: 614 RPDVRVSPGFSQNCLA 629
>pdb|2XR9|A Chain A, Crystal Structure Of Autotaxin (Enpp2)
Length = 827
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 239 GKPTLIDTSSSDLLYRTDFFPGLGWMLTKDLWDEISVKWPRSYWDDWIRQPEQRKDRACI 298
G+P ++ +S D+LY TDF G + LW ++ S + PE + C+
Sbjct: 564 GRPAVLYRTSYDILYHTDFESGYSEIFLMPLWTSYTI----SKQAEVSSIPEHLTN--CV 617
Query: 299 RPEISRTRTFSAGSIS 314
RP++ + FS ++
Sbjct: 618 RPDVRVSPGFSQNCLA 633
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 39 DVDKALSDLSADI---NSELEIHNLMMESVQQSIVQKKRALEKAEQENMQVVINNEKFHY 95
DVDKAL +L D+ + LE+ + + E ++Q +V KK V I +K
Sbjct: 51 DVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKK------------VRIGTDKGKI 98
Query: 96 SKDAIAIVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQN 151
++A+ V + SR +DL+ + R + EK +I+ N T I N
Sbjct: 99 IEEAVKEAV--SEILETSRRIDLIEEIRKA-EKPYVIMFVGFNGSGKTTTIAKLAN 151
>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 18/116 (15%)
Query: 39 DVDKALSDLSADI---NSELEIHNLMMESVQQSIVQKKRALEKAEQENMQVVINNEKFHY 95
DVDKAL +L D+ + LE+ + + E ++Q +V KK V I +K
Sbjct: 51 DVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKK------------VRIGTDKGKI 98
Query: 96 SKDAIAIVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQN 151
++A+ V + SR +DL+ + R + EK +I N T I N
Sbjct: 99 IEEAVKEAV--SEILETSRRIDLIEEIRKA-EKPYVIXFVGFNGSGKTTTIAKLAN 151
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 320 LPMKVSFYTRTFGKIGVSNGMYFDKHLKFIHLNDHFVPFTKLNLTYLLRENYDVEYVKLV 379
+PM ++ YT+ + +KH + I ++HF K +L L +EN ++YVK +
Sbjct: 25 MPMAINLYTK----------IEAEKHGEVILYSEHFGEERKFSLNDLRKENSWIDYVKGI 74
Query: 380 Y 380
+
Sbjct: 75 F 75
>pdb|1B35|B Chain B, Cricket Paralysis Virus (Crpv)
Length = 255
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 321 PMKVSFYTRTFGKIGVSNGMYFDKHLKFIHLNDHFVPFTKLNLTYLLRENYDVEYVKLVY 380
P++ YT F ++ +SN MY DK F+ L V ++N + ++Y+
Sbjct: 77 PVEKQLYTANFPEVLISNAMYQDKLKGFVGLRATLVVKVQVNSQPFQQGRLMLQYIPYAQ 136
Query: 381 SLP 383
+P
Sbjct: 137 YMP 139
>pdb|3MXN|A Chain A, Crystal Structure Of The Rmi Core Complex
pdb|4DAY|A Chain A, Crystal Structure Of The Rmi Core Complex With Mm2 Peptide
From Fancm
Length = 157
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 107 CNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIK 147
C R + C + I + PS+ K ++ QD N E N+ K
Sbjct: 113 CQRDLIDLCCLMTISFNPSLSKAMVLALQDVNMEHLENLKK 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,235,403
Number of Sequences: 62578
Number of extensions: 599234
Number of successful extensions: 1704
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1691
Number of HSP's gapped (non-prelim): 15
length of query: 469
length of database: 14,973,337
effective HSP length: 102
effective length of query: 367
effective length of database: 8,590,381
effective search space: 3152669827
effective search space used: 3152669827
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)