Query psy7047
Match_columns 469
No_of_seqs 227 out of 354
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 16:45:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03071 GNT-I: GNT-I family; 100.0 4E-116 9E-121 912.2 24.8 426 9-468 1-434 (434)
2 KOG1413|consensus 100.0 2E-103 4E-108 788.6 27.6 393 37-469 15-411 (411)
3 cd02514 GT13_GLCNAC-TI GT13_GL 100.0 5.9E-99 1E-103 766.2 28.6 329 99-457 1-333 (334)
4 PF05060 MGAT2: N-acetylglucos 99.1 5.3E-09 1.1E-13 108.2 18.2 213 87-306 19-288 (356)
5 cd04186 GT_2_like_c Subfamily 98.9 1.3E-08 2.8E-13 89.0 12.5 127 102-274 1-128 (166)
6 cd04196 GT_2_like_d Subfamily 98.9 4.4E-08 9.5E-13 89.8 15.0 181 102-306 2-202 (214)
7 cd04185 GT_2_like_b Subfamily 98.9 4E-08 8.6E-13 90.5 13.3 135 102-275 1-138 (202)
8 cd06433 GT_2_WfgS_like WfgS an 98.8 6.7E-08 1.4E-12 86.9 13.8 174 102-302 2-189 (202)
9 cd06423 CESA_like CESA_like is 98.8 4.1E-08 8.8E-13 84.6 11.4 150 102-275 1-171 (180)
10 PF00535 Glycos_transf_2: Glyc 98.8 4.5E-08 9.8E-13 84.6 9.9 100 102-222 2-105 (169)
11 cd06420 GT2_Chondriotin_Pol_N 98.7 2.2E-07 4.8E-12 83.6 13.0 163 102-300 1-174 (182)
12 cd02520 Glucosylceramide_synth 98.7 2.7E-07 5.8E-12 85.6 12.9 165 99-306 2-175 (196)
13 cd04184 GT2_RfbC_Mx_like Myxoc 98.6 5.1E-07 1.1E-11 82.6 13.4 179 99-302 2-196 (202)
14 cd00761 Glyco_tranf_GTA_type G 98.6 5.2E-07 1.1E-11 75.8 12.1 129 102-279 1-133 (156)
15 cd06439 CESA_like_1 CESA_like_ 98.6 7.4E-07 1.6E-11 84.8 13.1 115 97-234 28-144 (251)
16 cd02510 pp-GalNAc-T pp-GalNAc- 98.6 9.4E-07 2E-11 87.6 13.9 181 102-307 2-224 (299)
17 cd06421 CESA_CelA_like CESA_Ce 98.5 1.3E-06 2.8E-11 81.5 12.5 115 99-234 2-120 (234)
18 PRK11204 N-glycosyltransferase 98.5 1.1E-06 2.3E-11 91.3 12.9 115 97-235 53-171 (420)
19 PRK10018 putative glycosyl tra 98.5 2.3E-06 5.1E-11 85.8 14.6 191 97-313 4-212 (279)
20 cd04195 GT2_AmsE_like GT2_AmsE 98.5 2.1E-06 4.5E-11 78.7 12.4 162 102-288 2-183 (201)
21 cd06434 GT2_HAS Hyaluronan syn 98.4 1.9E-06 4.1E-11 80.9 11.7 109 100-236 2-114 (235)
22 cd02526 GT2_RfbF_like RfbF is 98.4 3.9E-06 8.5E-11 78.8 12.2 177 102-303 1-200 (237)
23 cd04192 GT_2_like_e Subfamily 98.4 2.8E-06 6.1E-11 78.7 10.9 100 102-219 1-106 (229)
24 cd02525 Succinoglycan_BP_ExoA 98.4 4.5E-06 9.8E-11 78.3 12.4 112 100-235 2-117 (249)
25 cd06427 CESA_like_2 CESA_like_ 98.4 5.8E-06 1.3E-10 79.1 13.0 117 99-235 2-122 (241)
26 KOG2791|consensus 98.3 1.7E-05 3.8E-10 81.6 16.2 219 98-342 117-385 (455)
27 TIGR03111 glyc2_xrt_Gpos1 puta 98.3 8.6E-06 1.9E-10 86.2 14.0 118 97-236 48-169 (439)
28 PF13641 Glyco_tranf_2_3: Glyc 98.3 1.1E-06 2.5E-11 82.1 6.5 154 99-274 2-175 (228)
29 cd06438 EpsO_like EpsO protein 98.3 5.6E-06 1.2E-10 75.8 10.9 104 102-220 1-106 (183)
30 cd02522 GT_2_like_a GT_2_like_ 98.3 1.7E-05 3.6E-10 73.6 13.7 174 100-304 1-183 (221)
31 cd06442 DPM1_like DPM1_like re 98.3 9.1E-06 2E-10 75.5 11.9 113 102-236 1-117 (224)
32 cd06435 CESA_NdvC_like NdvC_li 98.3 1.1E-05 2.3E-10 76.1 12.0 111 102-234 2-119 (236)
33 cd04179 DPM_DPG-synthase_like 98.2 1.3E-05 2.9E-10 72.0 11.3 116 102-238 1-120 (185)
34 cd06437 CESA_CaSu_A2 Cellulose 98.2 1.6E-05 3.4E-10 75.3 12.2 114 99-235 2-123 (232)
35 PRK10063 putative glycosyl tra 98.2 1.8E-05 3.8E-10 77.7 12.7 114 99-235 2-119 (248)
36 PRK10073 putative glycosyl tra 98.2 2.8E-05 6E-10 79.5 13.3 102 97-220 5-110 (328)
37 PRK14583 hmsR N-glycosyltransf 98.1 2.9E-05 6.2E-10 82.2 13.5 115 97-235 74-192 (444)
38 PRK11498 bcsA cellulose syntha 98.1 2.4E-05 5.3E-10 89.5 12.7 176 98-299 260-460 (852)
39 TIGR03472 HpnI hopanoid biosyn 98.1 4.7E-05 1E-09 78.7 13.6 117 97-235 40-162 (373)
40 cd04187 DPM1_like_bac Bacteria 98.0 4.4E-05 9.5E-10 69.2 11.0 106 102-229 1-111 (181)
41 cd06436 GlcNAc-1-P_transferase 98.0 5.7E-05 1.2E-09 70.2 11.9 114 102-234 1-124 (191)
42 TIGR01556 rhamnosyltran L-rham 98.0 6.4E-05 1.4E-09 73.7 11.9 175 105-307 1-200 (281)
43 COG1216 Predicted glycosyltran 98.0 5.7E-05 1.2E-09 75.8 10.9 120 97-238 2-124 (305)
44 TIGR03469 HonB hopene-associat 97.9 0.00011 2.3E-09 76.5 12.8 109 96-220 38-158 (384)
45 PLN02726 dolichyl-phosphate be 97.9 0.00012 2.7E-09 70.3 12.3 105 96-219 7-117 (243)
46 cd06913 beta3GnTL1_like Beta 1 97.9 8.6E-05 1.9E-09 69.6 10.0 181 102-303 1-205 (219)
47 cd04188 DPG_synthase DPG_synth 97.8 0.00024 5.3E-09 66.2 11.1 99 102-219 1-106 (211)
48 cd02511 Beta4Glucosyltransfera 97.7 0.00022 4.7E-09 68.3 10.4 95 100-221 2-97 (229)
49 COG0463 WcaA Glycosyltransfera 97.7 0.00029 6.3E-09 59.5 9.7 99 97-215 2-102 (291)
50 TIGR03030 CelA cellulose synth 97.7 0.00021 4.6E-09 80.5 11.3 179 98-300 131-350 (713)
51 cd04190 Chitin_synth_C C-termi 97.7 0.00017 3.6E-09 69.9 8.6 98 102-236 1-111 (244)
52 PRK13915 putative glucosyl-3-p 97.6 0.00052 1.1E-08 69.9 11.1 122 97-235 30-153 (306)
53 PTZ00260 dolichyl-phosphate be 97.3 0.0028 6E-08 65.2 11.9 122 95-236 67-202 (333)
54 PRK05454 glucosyltransferase M 97.1 0.006 1.3E-07 68.9 13.7 120 93-234 119-256 (691)
55 cd04191 Glucan_BSP_ModH Glucan 97.1 0.0083 1.8E-07 59.6 12.8 113 100-234 1-131 (254)
56 PRK10714 undecaprenyl phosphat 97.0 0.0061 1.3E-07 62.4 11.3 103 99-220 7-115 (325)
57 PF10111 Glyco_tranf_2_2: Glyc 96.7 0.025 5.4E-07 56.4 12.9 116 102-234 2-128 (281)
58 PF01755 Glyco_transf_25: Glyc 96.6 0.021 4.5E-07 53.5 10.6 111 100-224 2-114 (200)
59 PRK14716 bacteriophage N4 adso 96.5 0.022 4.7E-07 62.3 11.8 185 97-299 65-280 (504)
60 COG1215 Glycosyltransferases, 96.3 0.05 1.1E-06 56.2 12.4 159 97-275 53-231 (439)
61 PRK11234 nfrB bacteriophage N4 95.3 0.14 2.9E-06 58.6 11.5 109 97-220 62-180 (727)
62 PRK15489 nfrB bacteriophage N4 94.9 0.22 4.8E-06 56.7 11.7 108 98-220 71-188 (703)
63 KOG2978|consensus 93.1 0.3 6.6E-06 47.6 7.1 103 100-221 5-114 (238)
64 cd06532 Glyco_transf_25 Glycos 92.9 0.47 1E-05 42.1 7.7 95 102-211 2-98 (128)
65 PF04666 Glyco_transf_54: N-Ac 92.3 0.93 2E-05 46.7 9.9 125 99-225 53-199 (297)
66 COG3306 Glycosyltransferase in 90.5 0.7 1.5E-05 46.5 6.7 110 100-223 3-114 (255)
67 PF01501 Glyco_transf_8: Glyco 90.1 1.4 3E-05 41.6 8.1 126 103-234 2-133 (250)
68 cd04194 GT8_A4GalT_like A4GalT 89.2 2.5 5.4E-05 41.0 9.4 120 103-233 3-129 (248)
69 cd00505 Glyco_transf_8 Members 86.5 5.6 0.00012 38.8 10.0 110 100-217 1-117 (246)
70 COG2943 MdoH Membrane glycosyl 86.2 12 0.00027 41.7 13.1 113 99-233 145-275 (736)
71 PF13712 Glyco_tranf_2_5: Glyc 79.2 7 0.00015 38.1 7.3 49 178-233 41-90 (217)
72 PF03214 RGP: Reversibly glyco 78.1 2.3 4.9E-05 44.6 3.7 114 104-233 13-126 (348)
73 PF09258 Glyco_transf_64: Glyc 77.6 6.4 0.00014 39.3 6.7 93 102-221 3-101 (247)
74 KOG4179|consensus 76.6 18 0.00038 39.4 9.8 112 102-225 294-408 (568)
75 PLN02523 galacturonosyltransfe 75.2 81 0.0018 35.5 14.7 114 98-213 247-394 (559)
76 PRK15171 lipopolysaccharide 1, 69.8 33 0.00072 35.7 9.9 124 98-233 24-154 (334)
77 TIGR02251 HIF-SF_euk Dullard-l 67.0 11 0.00024 34.9 5.2 43 103-151 38-80 (162)
78 PF13506 Glyco_transf_21: Glyc 66.9 10 0.00022 35.5 5.0 45 187-235 22-67 (175)
79 cd06431 GT8_LARGE_C LARGE cata 61.4 46 0.00099 33.9 8.8 125 100-233 3-133 (280)
80 PF06103 DUF948: Bacterial pro 60.6 28 0.00061 29.0 6.0 38 33-70 31-68 (90)
81 KOG2977|consensus 60.3 27 0.0006 36.3 6.9 58 93-150 62-126 (323)
82 cd06430 GT8_like_2 GT8_like_2 58.9 70 0.0015 33.3 9.7 106 103-217 5-118 (304)
83 PLN02718 Probable galacturonos 56.2 2.9E+02 0.0063 31.6 14.5 114 100-216 314-438 (603)
84 TIGR00112 proC pyrroline-5-car 55.4 77 0.0017 31.2 9.1 116 100-222 44-168 (245)
85 TIGR02209 ftsL_broad cell divi 53.8 57 0.0012 26.6 6.7 35 37-71 26-60 (85)
86 PRK06568 F0F1 ATP synthase sub 52.3 76 0.0016 29.8 8.0 53 7-70 7-59 (154)
87 cd06429 GT8_like_1 GT8_like_1 51.1 1.6E+02 0.0034 29.7 10.6 116 101-218 2-136 (257)
88 PF13632 Glyco_trans_2_3: Glyc 48.4 19 0.00042 32.8 3.4 103 199-306 2-122 (193)
89 KOG3738|consensus 47.3 35 0.00076 37.1 5.5 180 98-307 124-346 (559)
90 PF01762 Galactosyl_T: Galacto 47.0 1.3E+02 0.0028 28.2 8.8 88 185-273 69-163 (195)
91 PF10828 DUF2570: Protein of u 45.2 86 0.0019 27.5 6.8 34 36-69 26-59 (110)
92 COG4741 Predicted secreted end 42.9 2E+02 0.0043 27.6 9.0 25 86-110 97-124 (175)
93 PRK05759 F0F1 ATP synthase sub 41.5 87 0.0019 28.4 6.6 24 5-28 5-28 (156)
94 cd04181 NTP_transferase NTP_tr 41.3 2.2E+02 0.0048 26.2 9.4 95 96-217 20-117 (217)
95 PF00430 ATP-synt_B: ATP synth 41.0 78 0.0017 27.5 6.0 21 8-28 3-23 (132)
96 PRK14471 F0F1 ATP synthase sub 40.9 1.5E+02 0.0031 27.4 8.0 23 6-28 10-32 (164)
97 PF06667 PspB: Phage shock pro 40.8 1.1E+02 0.0023 25.7 6.3 16 7-22 11-26 (75)
98 PF14584 DUF4446: Protein of u 40.6 86 0.0019 29.4 6.4 33 39-71 43-75 (151)
99 cd02537 GT8_Glycogenin Glycoge 40.3 2.4E+02 0.0053 27.5 9.9 104 103-217 4-111 (240)
100 PF07507 WavE: WavE lipopolysa 39.1 2.1E+02 0.0046 29.8 9.6 117 109-238 18-143 (311)
101 PRK13461 F0F1 ATP synthase sub 38.2 1.1E+02 0.0023 28.2 6.7 28 1-28 1-29 (159)
102 PRK00888 ftsB cell division pr 38.2 1.4E+02 0.003 26.2 7.0 34 37-70 29-62 (105)
103 PRK14872 rod shape-determining 38.0 79 0.0017 33.4 6.3 27 195-221 194-220 (337)
104 PRK13460 F0F1 ATP synthase sub 37.3 93 0.002 29.1 6.2 23 6-28 18-40 (173)
105 TIGR02976 phageshock_pspB phag 37.1 66 0.0014 26.9 4.5 15 10-24 9-23 (75)
106 PRK08475 F0F1 ATP synthase sub 36.9 99 0.0022 29.0 6.3 22 7-28 25-46 (167)
107 PF03142 Chitin_synth_2: Chiti 36.1 63 0.0014 36.1 5.5 38 195-235 201-238 (527)
108 COG1442 RfaJ Lipopolysaccharid 36.1 4E+02 0.0088 28.0 11.2 158 100-272 3-169 (325)
109 PRK14472 F0F1 ATP synthase sub 34.9 1E+02 0.0023 28.8 6.1 23 6-28 20-42 (175)
110 PRK06569 F0F1 ATP synthase sub 34.4 2.1E+02 0.0046 27.1 7.9 23 6-28 12-34 (155)
111 PRK15396 murein lipoprotein; P 34.2 2.8E+02 0.0061 23.4 7.8 36 36-71 26-61 (78)
112 PF04977 DivIC: Septum formati 34.2 79 0.0017 25.1 4.5 30 39-68 21-50 (80)
113 PLN03180 reversibly glycosylat 33.8 11 0.00024 39.7 -0.7 17 195-211 93-109 (346)
114 PRK09039 hypothetical protein; 33.1 85 0.0018 33.0 5.7 64 8-71 26-89 (343)
115 PF05377 FlaC_arch: Flagella a 32.9 2E+02 0.0044 22.8 6.3 45 38-82 3-47 (55)
116 PRK12491 pyrroline-5-carboxyla 32.3 2.4E+02 0.0053 28.3 8.7 114 100-221 64-187 (272)
117 PF03031 NIF: NLI interacting 32.0 60 0.0013 29.1 3.9 43 103-151 32-74 (159)
118 PRK13454 F0F1 ATP synthase sub 31.0 2.6E+02 0.0057 26.5 8.2 20 8-27 35-54 (181)
119 PRK09174 F0F1 ATP synthase sub 30.9 2.4E+02 0.0053 27.5 8.1 23 6-28 55-77 (204)
120 PRK13455 F0F1 ATP synthase sub 30.5 1.7E+02 0.0038 27.5 6.9 21 8-28 30-50 (184)
121 PF00483 NTP_transferase: Nucl 30.4 2.2E+02 0.0048 27.0 7.7 108 107-233 28-139 (248)
122 COG5353 Uncharacterized protei 30.3 63 0.0014 30.6 3.7 35 1-36 1-37 (161)
123 cd06432 GT8_HUGT1_C_like The C 30.1 4.5E+02 0.0098 26.1 10.0 95 112-214 16-114 (248)
124 PRK13453 F0F1 ATP synthase sub 29.9 1.4E+02 0.0031 27.9 6.2 21 7-27 21-41 (173)
125 PF04999 FtsL: Cell division p 28.4 1.2E+02 0.0026 25.5 4.9 33 39-71 39-71 (97)
126 PRK14473 F0F1 ATP synthase sub 27.4 1.8E+02 0.0038 26.9 6.2 23 6-28 10-32 (164)
127 COG0711 AtpF F0F1-type ATP syn 26.9 3.5E+02 0.0075 25.2 8.1 22 7-28 9-30 (161)
128 PRK09173 F0F1 ATP synthase sub 25.9 3.7E+02 0.0079 24.6 8.0 20 7-26 4-23 (159)
129 PF12804 NTP_transf_3: MobA-li 25.5 4.6E+02 0.01 23.0 8.8 100 107-233 22-122 (160)
130 PRK05450 3-deoxy-manno-octulos 23.6 6.4E+02 0.014 24.0 9.6 91 107-220 25-116 (245)
131 PRK06231 F0F1 ATP synthase sub 22.8 2.2E+02 0.0048 27.7 6.2 22 7-28 51-72 (205)
132 PRK08476 F0F1 ATP synthase sub 22.6 5.6E+02 0.012 23.3 8.4 21 7-27 10-30 (141)
133 TIGR02976 phageshock_pspB phag 22.3 3.1E+02 0.0067 22.9 6.1 17 6-22 10-26 (75)
134 PRK09458 pspB phage shock prot 21.5 2.7E+02 0.0059 23.4 5.5 9 10-18 14-22 (75)
135 PF13974 YebO: YebO-like prote 21.2 2.4E+02 0.0052 24.0 5.2 7 11-17 9-15 (80)
136 CHL00118 atpG ATP synthase CF0 21.1 3.1E+02 0.0066 25.3 6.5 19 9-27 27-45 (156)
137 PF13974 YebO: YebO-like prote 20.7 3.9E+02 0.0084 22.8 6.3 10 19-28 11-20 (80)
138 KOG2571|consensus 20.4 4.8E+02 0.011 31.1 9.1 47 185-234 428-476 (862)
139 TIGR02250 FCP1_euk FCP1-like p 20.2 2.8E+02 0.006 25.7 6.0 45 102-152 53-97 (156)
No 1
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=100.00 E-value=4.3e-116 Score=912.20 Aligned_cols=426 Identities=49% Similarity=0.905 Sum_probs=266.7
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCcccC-------CChhhHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy7047 9 ICALSLSLWVFVSHYVFLGRSNNEFS-------NNIGDVDKALSDLSADINSELEIHNLMMESVQQSIVQKKRALEKAEQ 81 (469)
Q Consensus 9 ~~~~~~~~w~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (469)
|||++|++|+++..|+++.++.+... ....+|.+.+.+++.+.+.+++..+..+..+.+...+-+...+..+.
T Consensus 1 ~~A~l~~~~~~i~lf~~~s~~~~~~~~~~~~~~~~~~ql~~~I~~~~~~~e~~l~le~~~l~~~~~~~~~~~~~~~~~~~ 80 (434)
T PF03071_consen 1 WGAALFFIWIFILLFFLWSRYADRLNAAIESENKCTSQLEKEIDQIAQQQEAILELEKKQLKRLEEELRQLRDRVEDLEE 80 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceehHHHHHHHHHHHHhccCCCccchhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 68999999999999999998665321 22334555666666555555544442222222211111111112222
Q ss_pred ccccccccCCccCCCCCcceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcceEeecCC
Q psy7047 82 ENMQVVINNEKFHYSKDAIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPN 160 (469)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~d 160 (469)
... ......++...+||||||||||+ |+|||++|++++|++++|||+|||||+++++.+++++|++++++|+|++
T Consensus 81 ~~~----~~~~~~~~~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~~y~~~v~~i~~~~ 156 (434)
T PF03071_consen 81 KKQ----PKTNSKNKEPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIKSYGDQVTYIQHPD 156 (434)
T ss_dssp --------------------EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHHGGGGGSEEEE-S-
T ss_pred ccc----cccccccCCCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHHHhhhhheeeecCC
Confidence 211 12234556779999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCccccccccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCCCCC
Q psy7047 161 QQDIAVPPKEKKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWNDNGK 240 (469)
Q Consensus 161 ~~~i~~~~~~k~~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNdnG~ 240 (469)
.+++.+.++++++.+|++||+||+|||++||+.++|++||||||||++|||||+||++++++|++|++|||||||||||+
T Consensus 157 ~~~i~~~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawNdnG~ 236 (434)
T PF03071_consen 157 FSPITIPPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWNDNGK 236 (434)
T ss_dssp -S-----TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES--TT-B
T ss_pred cCCceeCcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEccccCCc
Confidence 98898889888999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCcceeecCCCCccccccchhhHHHhhcCCCCCCccchhccccccCCCceeeeCccccccccCCCCCcccccC
Q psy7047 241 PTLIDTSSSDLLYRTDFFPGLGWMLTKDLWDEISVKWPRSYWDDWIRQPEQRKDRACIRPEISRTRTFSAGSISPVVTKL 320 (469)
Q Consensus 241 ~~~vd~~d~~~lyRsdffPglGWmtwrr~W~El~pkWP~~~WD~w~r~~~~r~gr~cI~PeisRt~~~s~~~~~~~~~~~ 320 (469)
.+.++..+|+.+||+||||||||||||++|+|++|+||+++||||||+|++||||+||+||||||+
T Consensus 237 ~~~~~~~~~~~lyRsdffpglGWml~r~~w~el~~~Wp~~~WDdwmR~~~~rkgR~cIrPeisRt~-------------- 302 (434)
T PF03071_consen 237 EHFVDDSRPSLLYRSDFFPGLGWMLTRELWDELEPKWPKAFWDDWMRQPEQRKGRQCIRPEISRTY-------------- 302 (434)
T ss_dssp GGGS-TT-TT-EEEESS---SSEEEEHHHHHHHGGG--SS-HHHHHTSHHHHTT-EEEEESSBSEE--------------
T ss_pred cccccCCCccceEecccCCchHHHhhHHHHHhhcccCCCCCchhhhcCccccCCCceeeccCCCcc--------------
Confidence 999876679999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccccccccccchhhhhcccccCCccccCCcCcccccchhhhHHHHHHHHhcCCCcchhhhhhcccCCCce
Q psy7047 321 PMKVSFYTRTFGKIGVSNGMYFDKHLKFIHLNDHFVPFTKLNLTYLLRENYDVEYVKLVYSLPTVTYDDLKMNTIKHDGA 400 (469)
Q Consensus 321 ni~~~~~~~~fG~~g~s~g~~f~~~l~~i~ln~~~v~f~~~dl~~l~~~~Yd~~~~~~v~~a~~~~~~~~~~~~~~~~~~ 400 (469)
|||+.|+|+|+||++||++|++|+++|+|+++||+||++++||+.+.++|++|++++++++........++
T Consensus 303 ---------~fg~~G~s~g~~f~~~l~~i~ln~~~v~~~~~dl~yl~~~~Yd~~~~~~v~~a~~v~~~~~~~~~~~~~~~ 373 (434)
T PF03071_consen 303 ---------HFGKKGVSNGQFFDKYLKKIKLNTEFVDFTKMDLSYLLKDNYDKEFKKEVYSAPPVDSSDLITFAFSTSGD 373 (434)
T ss_dssp ---------E--SSSSS-THHHHHTGGGB-B--S---GGGS--GGGSHHHHHHHHHHHHHHS-B--HHHHHTT--TT-SE
T ss_pred ---------ccCcCCcchHHHHHHHHhhccccCCcccceeCCHHHhhhhhhHHHHHHHHhcCcccchhhhccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988776667789
Q ss_pred EEEEeCCHHHHHHHHhHcCCcccCCCCCCCcceeeEEEeecCCCCCCCceEEeecCCCcccCCCCCCC
Q psy7047 401 VRIAYYTKDQFRRNAKFLGLMDDFRSGVPRTVRTSALLQTNGKHPNCGRDILVKMKPKYEAEKPDVTY 468 (469)
Q Consensus 401 v~i~Y~~~~~~~~~a~~l~l~~d~k~gvpR~~Y~Gvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (469)
|||+|+++++|+++|++||||+|+|+|||||||+|||+|++. |+||||+ |+..|.+||++|
T Consensus 374 vri~Y~~~~~~~~~a~~l~im~d~k~GvpRtaY~GVV~~~~~-----g~rv~lv--p~~~~~~y~~~w 434 (434)
T PF03071_consen 374 VRIQYSSQPDFKRIAKKLGIMDDWKSGVPRTAYKGVVTFFYK-----GRRVFLV--PPYSWSGYDPSW 434 (434)
T ss_dssp EEEE--SHHHHHHHHHHTT----EETTEETT-BTTBEEEEET-----TEEEEEE----TT--S--TT-
T ss_pred EEEEECChHHHHHHHHhCCchhhccCCCcccccceEEEEEEC-----CEEEEEE--CCcchhhcCCCC
Confidence 999999999999999999999999999999999999999997 9998876 666689999999
No 2
>KOG1413|consensus
Probab=100.00 E-value=1.7e-103 Score=788.57 Aligned_cols=393 Identities=45% Similarity=0.790 Sum_probs=360.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhhhccccccccCCccCCCCCcceEEEEecCChh-HHH
Q psy7047 37 IGDVDKALSDLSADINSELEIHN-LMMESVQQSIVQKKRALEKAEQENMQVVINNEKFHYSKDAIAIVVIACNRVT-VSR 114 (469)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPVlV~a~NRPd-l~R 114 (469)
..++.+.+..++..+..|.|.+. .+-+.+++..+++ . +.+. ....++.+.++++|||||+||||+ |++
T Consensus 15 l~~~~~~~~~~~~~~~~e~e~~~~q~~~~~~~~ra~~------~-~~~~---~~~~p~~~~~~v~pvvVf~csR~~~lr~ 84 (411)
T KOG1413|consen 15 LSKLIESANLCESVIRLEKEEQSRQIAEADHKIRANR------V-ALED---LIQIPLKNWPPVIPVVVFACSRADALRR 84 (411)
T ss_pred HHHhhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhh------c-cCcc---cccCcccCCCCceeEEEEecCcHHHHHH
Confidence 66788889999999888877643 3333333333322 1 1111 122337888999999999999999 999
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcceEeecC--CCCCccCCccccccccchhhhhhHHHHHHHhhh
Q psy7047 115 CLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQP--NQQDIAVPPKEKKFKGYFKIARHYGWALNQMFY 192 (469)
Q Consensus 115 tLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~--d~~~i~~~~~~k~~~~y~~Ia~Hyk~aLs~vF~ 192 (469)
|++.|+.++|++++|||||||||.++++.+++++|+..+.+++|+ +..++.++++++++.+|++||+||+|||+++|-
T Consensus 85 ~v~kll~yrPsaekfpiiVSQD~~~e~vk~~~~~~g~~v~~i~~~~h~~~ei~v~~~~~k~~~Yy~IarHYkwAL~q~F~ 164 (411)
T KOG1413|consen 85 HVKKLLEYRPSAEKFPIIVSQDCEKEAVKKKLLSYGSDVSHIQHPMHLKDEISVPPRHKKFNAYYKIARHYKWALNQLFI 164 (411)
T ss_pred HHHHHHHhCcchhhcCEEEeccCCcHHHHHHHHHhccchhhhcCccccccccccCCcccccchhHHHHHHHHHHHhhHHh
Confidence 999999999999999999999999999999999999999999999 668899999999999999999999999999999
Q ss_pred hccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCCCCCCcccCCCCCcceeecCCCCccccccchhhHHH
Q psy7047 193 EFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRTDFFPGLGWMLTKDLWDE 272 (469)
Q Consensus 193 ~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNdnG~~~~vd~~d~~~lyRsdffPglGWmtwrr~W~E 272 (469)
.++++++||+||||.++||||+||..+..+++.|++|||+|||||||++..|+...|+.+||||||||||||+++++|+|
T Consensus 165 ~~~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcvsaWNDNGk~~~Id~~~~~~lYRtDFFpGLGWml~~~~W~E 244 (411)
T KOG1413|consen 165 VFRESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCVSAWNDNGKKQTIDSTRPSLLYRTDFFPGLGWMLTKKLWEE 244 (411)
T ss_pred hcCCceeEEecchhhhhhHHHHHHHHHHHHHhcCCceEEeeeeccCCCcccccccccchhhhccccccchHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred hhcCCCCCCccchhccccccCCCceeeeCccccccccCCCCCcccccCCcccccccccccccccccccchhhhhcccccC
Q psy7047 273 ISVKWPRSYWDDWIRQPEQRKDRACIRPEISRTRTFSAGSISPVVTKLPMKVSFYTRTFGKIGVSNGMYFDKHLKFIHLN 352 (469)
Q Consensus 273 l~pkWP~~~WD~w~r~~~~r~gr~cI~PeisRt~~~s~~~~~~~~~~~ni~~~~~~~~fG~~g~s~g~~f~~~l~~i~ln 352 (469)
++|+||.++||||||.|++||||+||+||||||+ +||++|+|.||||++||++|++|
T Consensus 245 Lsp~wP~~fWDDWmr~pe~rK~R~cIRPEiSRTm-----------------------tyg~~G~S~GQfFsd~L~~IK~n 301 (411)
T KOG1413|consen 245 LSPKWPVAFWDDWMRIPENRKGRQCIRPEISRTM-----------------------TYGKKGSSEGQFFSDYLEKIKAN 301 (411)
T ss_pred hCCCCcccchhhhhhchhhhccccccChHhhhhh-----------------------hcccccccccccHHHHHHHhhhh
Confidence 9999999999999999999999999999999998 99999999999999999999999
Q ss_pred CccccCCcCcccccchhhhHHHHHHHHhcCCCcchhhhhhcccCCCceEEEEeCCHHHHHHHHhHcCCcccCCCCCCCcc
Q psy7047 353 DHFVPFTKLNLTYLLRENYDVEYVKLVYSLPTVTYDDLKMNTIKHDGAVRIAYYTKDQFRRNAKFLGLMDDFRSGVPRTV 432 (469)
Q Consensus 353 ~~~v~f~~~dl~~l~~~~Yd~~~~~~v~~a~~~~~~~~~~~~~~~~~~v~i~Y~~~~~~~~~a~~l~l~~d~k~gvpR~~ 432 (469)
+.+|+|+++||+||.+++|++.+...|++|++++++++.....+..+.|||+|++..+|.++|+.||+|+|+|+||||||
T Consensus 302 ~~~v~fs~i~l~ylqk~~y~~~~~~~I~~ar~id~e~~~~~~~k~~~~vrI~Y~~~~e~~r~ak~l~lm~d~k~GvpRta 381 (411)
T KOG1413|consen 302 DQQVKFSKIDLSYLQKSNYDKLFSIEIMRARPIDLEKLILDRDKSEGDVRIQYTNIMEFSRVAKELGLMHDLKKGVPRTA 381 (411)
T ss_pred hhhccccccchHhhhhhhhhhHHHHHHHhcCcccHHHhhhhhhccccceeEEecchHHHHHHHHHhccHHHHhccCcccc
Confidence 99999999999999999999999999999999999998877666667799999999999999999999999999999999
Q ss_pred eeeEEEeecCCCCCCCceEEeecCCCcccCCCCCCCC
Q psy7047 433 RTSALLQTNGKHPNCGRDILVKMKPKYEAEKPDVTYS 469 (469)
Q Consensus 433 Y~Gvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (469)
|.|||+|++. |+||||+++++ +++||+.||
T Consensus 382 Y~GiVt~~in-----~~Rv~Lvp~~s--~~~y~~~ws 411 (411)
T KOG1413|consen 382 YIGIVTFLIN-----GRRVFLVPPVS--VMGYDISWS 411 (411)
T ss_pred cceEEEEEEc-----ceEEEecCCcc--ccccCCCCC
Confidence 9999999987 89988776666 889999997
No 3
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=100.00 E-value=5.9e-99 Score=766.17 Aligned_cols=329 Identities=53% Similarity=0.966 Sum_probs=311.1
Q ss_pred cceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcceEeecCCCCCccCCccccccccch
Q psy7047 99 AIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYF 177 (469)
Q Consensus 99 ~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~y~ 177 (469)
++||||+|||||+ |+|||+||++++|+.++++|||+|||+++++.++++.|+.++++|+|++.++.+..+.+ ++.+|+
T Consensus 1 ~~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~-~~~~y~ 79 (334)
T cd02514 1 VIPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGDGVTHIQHPPISIKNVNPPH-KFQGYY 79 (334)
T ss_pred CcCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhccccEEEEcccccccccCccc-ccchhh
Confidence 4899999999999 99999999999999999999999999999999999999777889999988766655444 788999
Q ss_pred hhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCCCCCCcccCCCCCcceeecCC
Q psy7047 178 KIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRTDF 257 (469)
Q Consensus 178 ~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNdnG~~~~vd~~d~~~lyRsdf 257 (469)
+|++||+|||+++|+.+++++||||||||++|||||+||+++|++|++|++|||||||||||+...++.. ++++||++|
T Consensus 80 ~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~NdnG~~~~~~~~-~~~lyrs~f 158 (334)
T cd02514 80 RIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWNDNGKEHFVDDT-PSLLYRTDF 158 (334)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeeccCCcccccCCC-cceEEEecC
Confidence 9999999999999997789999999999999999999999999999999999999999999998775332 889999999
Q ss_pred CCccccccchhhHHHhhcCCCCCCccchhccccccCCCceeeeCccccccccCCCCCcccccCCcccccccccccccccc
Q psy7047 258 FPGLGWMLTKDLWDEISVKWPRSYWDDWIRQPEQRKDRACIRPEISRTRTFSAGSISPVVTKLPMKVSFYTRTFGKIGVS 337 (469)
Q Consensus 258 fPglGWmtwrr~W~El~pkWP~~~WD~w~r~~~~r~gr~cI~PeisRt~~~s~~~~~~~~~~~ni~~~~~~~~fG~~g~s 337 (469)
||||||||||++|+|++|+||..+||+|||.|++||||+||+||||||+ |||++|+|
T Consensus 159 f~glGWml~r~~W~e~~~~wp~~~WD~w~R~~~~rkgr~cirPeisRt~-----------------------~~g~~g~s 215 (334)
T cd02514 159 FPGLGWMLTRKLWKELEPKWPKAFWDDWMRLPEQRKGRECIRPEISRTY-----------------------HFGKKGVS 215 (334)
T ss_pred CCchHHHHHHHHHHHhCCCCCCCChHHhhcchhhhcCCccccCCcchhe-----------------------eccccccc
Confidence 9999999999999999999999999999999999999999999999999 99999999
Q ss_pred cccchhhhhcccccCCccccCCcCcccccchhhhHHHHHHHHhcCCCcchhhh---hhcccCCCceEEEEeCCHHHHHHH
Q psy7047 338 NGMYFDKHLKFIHLNDHFVPFTKLNLTYLLRENYDVEYVKLVYSLPTVTYDDL---KMNTIKHDGAVRIAYYTKDQFRRN 414 (469)
Q Consensus 338 ~g~~f~~~l~~i~ln~~~v~f~~~dl~~l~~~~Yd~~~~~~v~~a~~~~~~~~---~~~~~~~~~~v~i~Y~~~~~~~~~ 414 (469)
+||||++||++|+||+++|+|.++||+||.+++||+.++++|++|++++++++ .+..++..+++||+|+++.+|+++
T Consensus 216 ~g~f~~~~l~~i~ln~~~v~~~~~dl~~l~~~~y~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~ 295 (334)
T cd02514 216 NGQFFDKYLKKIKLNTVFVVFTKLDLSYLKKDNYDKEFHRLVYGAVVLDHEKNPCELSFVPDTEGKVRVVYTGRDDFKTW 295 (334)
T ss_pred cchHHHHHhhcccccccccccccCCHHHHhHHHHHHHHHHHHhcCcccchhcccchhhcCcCCCCCEEEEECCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997 355667888999999999999999
Q ss_pred HhHcCCcccCCCCCCCcceeeEEEeecCCCCCCCceEEeecCC
Q psy7047 415 AKFLGLMDDFRSGVPRTVRTSALLQTNGKHPNCGRDILVKMKP 457 (469)
Q Consensus 415 a~~l~l~~d~k~gvpR~~Y~Gvv~~~~~~~~~~~~~~~~~~~~ 457 (469)
|++||+|+|+|+|||||+|+|||+|++. |+||||.++|
T Consensus 296 a~~~~~~~~~k~g~~R~~y~gvv~~~~~-----~~~v~lv~~~ 333 (334)
T cd02514 296 AKAFGVMDDLKDGVPRTAYKGIVRFFFK-----GNRVFLVPPP 333 (334)
T ss_pred HHHhCcccccccCCcccceeEEEEEEEC-----CEEEEEeCCC
Confidence 9999999999999999999999999997 9999998876
No 4
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=99.08 E-value=5.3e-09 Score=108.17 Aligned_cols=213 Identities=23% Similarity=0.348 Sum_probs=140.0
Q ss_pred cccCCccCCC-CCcceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhh-hcceEeec-----
Q psy7047 87 VINNEKFHYS-KDAIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQ-NQVHLIQQ----- 158 (469)
Q Consensus 87 ~~~~~~~~~~-~~~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~-~~i~~i~~----- 158 (469)
+.+..++.+- ...+.|||-+.|||+ |+..|+||.+++. .++.-|++|.|+..+|..+++++.. .++.-|-.
T Consensus 19 v~N~~~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~-I~~~llifSHd~~~~ein~~v~~I~Fc~v~QIf~P~S~q 97 (356)
T PF05060_consen 19 VLNEDKFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARG-IEEALLIFSHDFYSEEINDLVQSIDFCRVMQIFYPYSIQ 97 (356)
T ss_pred eehhhhcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhC-ccceEEEEeccCChHHHHHHHHhCCcceeEEEecccchh
Confidence 4455566553 356778888999999 9999999999964 6778999999999999999998854 23321211
Q ss_pred ----------CCCCCccCC--------ccc---------cccccchhhhhhHHHHHHHhhhhc-----cccEEEEEccCc
Q psy7047 159 ----------PNQQDIAVP--------PKE---------KKFKGYFKIARHYGWALNQMFYEF-----NFSTAIVIEDDL 206 (469)
Q Consensus 159 ----------~d~~~i~~~--------~~~---------k~~~~y~~Ia~Hyk~aLs~vF~~~-----~~~~vIILEDDL 206 (469)
|+-|+..+. +.+ -+-..+-.+..|.=|-++.||+.+ .-+.||.||||=
T Consensus 98 l~p~~FPG~dP~DCpr~i~k~~a~~~~C~na~~pD~yGhyRea~~tq~KHHWWWk~n~Vf~~l~~~~~~~g~v~fLEEDh 177 (356)
T PF05060_consen 98 LYPNEFPGQDPNDCPRDIKKEDALKLGCNNAEYPDSYGHYREAKFTQIKHHWWWKLNFVFDGLEETRNHNGWVLFLEEDH 177 (356)
T ss_pred hCCCCCCCCCcccccccccHhHHHhccCCCCCCccccCCcccccchhhhHHHHHHHHHHHHhhhhhccCCceEEEEeccc
Confidence 222321111 100 001123345667779999999965 246899999999
Q ss_pred ccCchHHHHHHhhhhhhcC---CCCeeEEecCCC-CCCCcccCCCCCcce----eecCCCCccccccchhhHHHhhc---
Q psy7047 207 DIAPDFFEYFLGTYPLLIS---DPTLWCVSAWND-NGKPTLIDTSSSDLL----YRTDFFPGLGWMLTKDLWDEISV--- 275 (469)
Q Consensus 207 vvSPDFf~Yf~~~L~ly~~---D~sI~~ISAwNd-nG~~~~vd~~d~~~l----yRsdffPglGWmtwrr~W~El~p--- 275 (469)
-++|||+.-+..+..+-.+ +-.|.+..+|.- ++.. .++..+ +.+ ..+-.|-|+.|+.|+.+..
T Consensus 178 yv~pD~l~~l~~~~~~~~~~cp~c~~~sLG~y~~~~~~~-----~~~~~v~~~~W~S-skHNmGmAfNRs~W~kI~~ca~ 251 (356)
T PF05060_consen 178 YVAPDFLHVLRLMIKLKKSECPDCDILSLGTYDKSNGYQ-----SDPNKVEVTPWIS-SKHNMGMAFNRSTWNKIKSCAD 251 (356)
T ss_pred ccchhHHHHHHHHHHHhhhcCCCCCEEeccCCccccccc-----cccceeeeecccc-ccccceeEecHHHHHHHHHHHH
Confidence 9999999877776665543 344566666662 2221 122222 222 2457999999999997754
Q ss_pred ---CCCCCCccchhcc---ccccCCCceeeeCccccc
Q psy7047 276 ---KWPRSYWDDWIRQ---PEQRKDRACIRPEISRTR 306 (469)
Q Consensus 276 ---kWP~~~WD~w~r~---~~~r~gr~cI~PeisRt~ 306 (469)
.+..-.||-=|.. +...+.-..++|..||+.
T Consensus 252 ~FC~yDDYNWDwSL~~ls~~cl~~~~kvL~~~~PRV~ 288 (356)
T PF05060_consen 252 EFCTYDDYNWDWSLQHLSQRCLPSPLKVLVPKGPRVF 288 (356)
T ss_pred HhCCCCCCCchHHHHHHHhhccCCccEEEEEccCcEE
Confidence 3455556543333 223455688999999999
No 5
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.94 E-value=1.3e-08 Score=88.95 Aligned_cols=127 Identities=18% Similarity=0.348 Sum_probs=93.0
Q ss_pred EEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcceEeecCCCCCccCCccccccccchhhh
Q psy7047 102 IVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFKIA 180 (469)
Q Consensus 102 VlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~y~~Ia 180 (469)
|++.+|||++ +.++|+||.++.. ....|+|..||+..++.+.++.+...+.++.++.. .+++
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~--~~~~iiivdd~s~~~~~~~~~~~~~~~~~~~~~~~---------------~g~~ 63 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTY--PDFEVIVVDNASTDGSVELLRELFPEVRLIRNGEN---------------LGFG 63 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccC--CCeEEEEEECCCCchHHHHHHHhCCCeEEEecCCC---------------cChH
Confidence 6899999999 9999999999864 34679999999998888888776544444443221 1234
Q ss_pred hhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCCCCCCcccCCCCCcceeecCCCCc
Q psy7047 181 RHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRTDFFPG 260 (469)
Q Consensus 181 ~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNdnG~~~~vd~~d~~~lyRsdffPg 260 (469)
. |++..+.....+.+++++||+.++|+++.-+.+. +..++.+..+++. ..|
T Consensus 64 ~----a~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~---~~~~~~~~~~~~~----------------------~~~ 114 (166)
T cd04186 64 A----GNNQGIREAKGDYVLLLNPDTVVEPGALLELLDA---AEQDPDVGIVGPK----------------------VSG 114 (166)
T ss_pred H----HhhHHHhhCCCCEEEEECCCcEECccHHHHHHHH---HHhCCCceEEEcc----------------------Cce
Confidence 3 4444455447999999999999999998766654 5667777777765 345
Q ss_pred cccccchhhHHHhh
Q psy7047 261 LGWMLTKDLWDEIS 274 (469)
Q Consensus 261 lGWmtwrr~W~El~ 274 (469)
-+++..|+.|+++.
T Consensus 115 ~~~~~~~~~~~~~~ 128 (166)
T cd04186 115 AFLLVRREVFEEVG 128 (166)
T ss_pred eeEeeeHHHHHHcC
Confidence 66777777787653
No 6
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.90 E-value=4.4e-08 Score=89.78 Aligned_cols=181 Identities=18% Similarity=0.181 Sum_probs=114.7
Q ss_pred EEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc----ceEeecCCCCCccCCccccccccc
Q psy7047 102 IVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ----VHLIQQPNQQDIAVPPKEKKFKGY 176 (469)
Q Consensus 102 VlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~----i~~i~~~d~~~i~~~~~~k~~~~y 176 (469)
|+|.+|||++ |.++|+||+++... .++|+|..||+.+++.++++.+..+ +.++.. +++
T Consensus 2 IvIp~yn~~~~l~~~l~sl~~q~~~--~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~-----------~~~---- 64 (214)
T cd04196 2 VLMATYNGEKYLREQLDSILAQTYK--NDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRN-----------GKN---- 64 (214)
T ss_pred EEEEecCcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeC-----------CCC----
Confidence 7899999999 99999999998533 5789999999999999999888643 111111 111
Q ss_pred hhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCC----CCCCCccc--C-CCC-
Q psy7047 177 FKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWN----DNGKPTLI--D-TSS- 248 (469)
Q Consensus 177 ~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwN----dnG~~~~v--d-~~d- 248 (469)
.+.+...+.|+.. -+.+.++++++|..+.|+.+.-+.+. +..++...++.+.- .++..... . ...
T Consensus 65 ~G~~~~~n~g~~~----~~g~~v~~ld~Dd~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (214)
T cd04196 65 LGVARNFESLLQA----ADGDYVFFCDQDDIWLPDKLERLLKA---FLKDDKPLLVYSDLELVDENGNPIGESFFEYQKI 137 (214)
T ss_pred ccHHHHHHHHHHh----CCCCEEEEECCCcccChhHHHHHHHH---HhcCCCceEEecCcEEECCCCCCccccccccccc
Confidence 2345544455432 37899999999999999988655554 45666666666521 11111100 0 000
Q ss_pred -----CcceeecCCCCccccccchhhHHHhhcCCCC--CCccchhccccccCCCceeeeCccccc
Q psy7047 249 -----SDLLYRTDFFPGLGWMLTKDLWDEISVKWPR--SYWDDWIRQPEQRKDRACIRPEISRTR 306 (469)
Q Consensus 249 -----~~~lyRsdffPglGWmtwrr~W~El~pkWP~--~~WD~w~r~~~~r~gr~cI~PeisRt~ 306 (469)
...++....++|-+.|++|++++++.+.-+. .+.|.++.....+.|+-...|+..-.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 202 (214)
T cd04196 138 KPGTSFNNLLFQNVVTGCTMAFNRELLELALPFPDADVIMHDWWLALLASAFGKVVFLDEPLILY 202 (214)
T ss_pred CCccCHHHHHHhCccCCceeeEEHHHHHhhccccccccccchHHHHHHHHHcCceEEcchhHHHH
Confidence 0112233456778899999999987654443 344444444445566666677654443
No 7
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.86 E-value=4e-08 Score=90.49 Aligned_cols=135 Identities=18% Similarity=0.292 Sum_probs=94.2
Q ss_pred EEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc--ceEeecCCCCCccCCccccccccchh
Q psy7047 102 IVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ--VHLIQQPNQQDIAVPPKEKKFKGYFK 178 (469)
Q Consensus 102 VlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~--i~~i~~~d~~~i~~~~~~k~~~~y~~ 178 (469)
|+|.+||+++ +.+||+||+++... .++|+|..||+.+.+.++++.+... +.++.++. |. +
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q~~~--~~eiiivD~~s~d~t~~~~~~~~~~~~i~~~~~~~-----------n~----g 63 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQTRP--PDHIIVIDNASTDGTAEWLTSLGDLDNIVYLRLPE-----------NL----G 63 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhccCC--CceEEEEECCCCcchHHHHHHhcCCCceEEEECcc-----------cc----c
Confidence 6889999999 99999999998533 4579999999999999999988643 23333321 22 2
Q ss_pred hhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCCCCCCcccCCCCCcceeecCCC
Q psy7047 179 IARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRTDFF 258 (469)
Q Consensus 179 Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNdnG~~~~vd~~d~~~lyRsdff 258 (469)
.+...+.|++.+. ...++.+++++||+.+.|++++=+.+. ++ ++.+.++.+.-.. .+.
T Consensus 64 ~~~~~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~---~~-~~~~~~~~~~~~~--------~~~--------- 121 (202)
T cd04185 64 GAGGFYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAY---AD-KDNPQFLAPLVLD--------PDG--------- 121 (202)
T ss_pred hhhHHHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHH---Hh-cCCceEecceeEc--------CCC---------
Confidence 3333344555544 236899999999999999988655554 44 6666666542111 011
Q ss_pred CccccccchhhHHHhhc
Q psy7047 259 PGLGWMLTKDLWDEISV 275 (469)
Q Consensus 259 PglGWmtwrr~W~El~p 275 (469)
+..|++..|+.|+++..
T Consensus 122 ~~~~~~~~~~~~~~~g~ 138 (202)
T cd04185 122 SFVGVLISRRVVEKIGL 138 (202)
T ss_pred ceEEEEEeHHHHHHhCC
Confidence 45788999999997753
No 8
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.84 E-value=6.7e-08 Score=86.92 Aligned_cols=174 Identities=13% Similarity=0.125 Sum_probs=112.3
Q ss_pred EEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcceEeecCCCCCccCCccccccccchhhh
Q psy7047 102 IVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFKIA 180 (469)
Q Consensus 102 VlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~y~~Ia 180 (469)
|+|.+||+++ +.+||++|+++... .++|+|..||+..++.+.++++..++..+.+.. + .+.+
T Consensus 2 ivi~~~n~~~~l~~~l~sl~~q~~~--~~evivvDd~s~d~~~~~~~~~~~~~~~~~~~~-----------~----~g~~ 64 (202)
T cd06433 2 IITPTYNQAETLEETIDSVLSQTYP--NIEYIVIDGGSTDGTVDIIKKYEDKITYWISEP-----------D----KGIY 64 (202)
T ss_pred EEEeccchHHHHHHHHHHHHhCCCC--CceEEEEeCCCCccHHHHHHHhHhhcEEEEecC-----------C----cCHH
Confidence 7899999999 99999999988542 378999999999999999998875432222211 1 2345
Q ss_pred hhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCC----CCCCcccC---CCCCccee
Q psy7047 181 RHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWND----NGKPTLID---TSSSDLLY 253 (469)
Q Consensus 181 ~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNd----nG~~~~vd---~~d~~~ly 253 (469)
..++.|+.. .+.+.++++++|+.+.|+.+.-+. ..+..++.+.+|+|.-. ++...... ......+.
T Consensus 65 ~a~n~~~~~----a~~~~v~~ld~D~~~~~~~~~~~~---~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (202)
T cd06433 65 DAMNKGIAL----ATGDIIGFLNSDDTLLPGALLAVV---AAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFLDKFLL 137 (202)
T ss_pred HHHHHHHHH----cCCCEEEEeCCCcccCchHHHHHH---HHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchhhhHHh
Confidence 555556654 368999999999999998875544 33445566655655321 22111100 00111334
Q ss_pred ecCCCCccccccchhhHHHhhcCCCC-----CCccchhccccccCCCce-eeeCc
Q psy7047 254 RTDFFPGLGWMLTKDLWDEISVKWPR-----SYWDDWIRQPEQRKDRAC-IRPEI 302 (469)
Q Consensus 254 RsdffPglGWmtwrr~W~El~pkWP~-----~~WD~w~r~~~~r~gr~c-I~Pei 302 (469)
...++++-|++..|++|+++.. |+. ..||.|+|. .+.|..- ..|+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~-f~~~~~~~~D~~~~~r~--~~~g~~~~~~~~~ 189 (202)
T cd06433 138 YGMPICHQATFFRRSLFEKYGG-FDESYRIAADYDLLLRL--LLAGKIFKYLPEV 189 (202)
T ss_pred hcCcccCcceEEEHHHHHHhCC-CchhhCchhhHHHHHHH--HHcCCceEecchh
Confidence 4557778899999999998753 332 246666665 4455444 44444
No 9
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.82 E-value=4.1e-08 Score=84.56 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=100.7
Q ss_pred EEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc----ceEeecCCCCCccCCccccccccc
Q psy7047 102 IVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ----VHLIQQPNQQDIAVPPKEKKFKGY 176 (469)
Q Consensus 102 VlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~----i~~i~~~d~~~i~~~~~~k~~~~y 176 (469)
|+|.+|||++ +.+||++|+++.. ..+.|+|..||+..++.+.++.+... +..+.+.. +
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~~--~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-----------~---- 63 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALDY--PKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKE-----------N---- 63 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCCC--CceEEEEEeCCCccchHHHHHHHhccccceEEEEEecc-----------c----
Confidence 6889999999 9999999999743 35689999999998888888887542 22222211 1
Q ss_pred hhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCCCCCCc--ccCC------CC
Q psy7047 177 FKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWNDNGKPT--LIDT------SS 248 (469)
Q Consensus 177 ~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNdnG~~~--~vd~------~d 248 (469)
.+.+...+.|+..+ +.+.++++++|..++|++++-| +..+..++.+.++++.-...... .... ..
T Consensus 64 ~g~~~~~n~~~~~~----~~~~i~~~D~D~~~~~~~l~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 136 (180)
T cd06423 64 GGKAGALNAGLRHA----KGDIVVVLDADTILEPDALKRL---VVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLS 136 (180)
T ss_pred CCchHHHHHHHHhc----CCCEEEEECCCCCcChHHHHHH---HHHhccCCCeeeEeeeEEEecCcCcceeccchheecc
Confidence 23455445555543 7999999999999999988766 33345577787777665432221 0000 00
Q ss_pred Cc--------ceeecCCCCccccccchhhHHHhhc
Q psy7047 249 SD--------LLYRTDFFPGLGWMLTKDLWDEISV 275 (469)
Q Consensus 249 ~~--------~lyRsdffPglGWmtwrr~W~El~p 275 (469)
.. ...+..+++|.+++..|++|+++..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~gg 171 (180)
T cd06423 137 IFRLGRRAQSALGGVLVLSGAFGAFRREALREVGG 171 (180)
T ss_pred eeeeeeehhheecceeecCchHHHHHHHHHHHhCC
Confidence 00 1122345678889999999998765
No 10
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.77 E-value=4.5e-08 Score=84.63 Aligned_cols=100 Identities=21% Similarity=0.394 Sum_probs=73.3
Q ss_pred EEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhh---hcceEeecCCCCCccCCccccccccch
Q psy7047 102 IVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQ---NQVHLIQQPNQQDIAVPPKEKKFKGYF 177 (469)
Q Consensus 102 VlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~---~~i~~i~~~d~~~i~~~~~~k~~~~y~ 177 (469)
|+|.+||+++ |.++|+||+++. ...+.|+|..||+..++.++++++. ..+.++.++.. .
T Consensus 2 vvip~~n~~~~l~~~l~sl~~q~--~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n---------------~ 64 (169)
T PF00535_consen 2 VVIPTYNEAEYLERTLESLLKQT--DPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPEN---------------L 64 (169)
T ss_dssp EEEEESS-TTTHHHHHHHHHHHS--GCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCC---------------S
T ss_pred EEEEeeCCHHHHHHHHHHHhhcc--CCCEEEEEecccccccccccccccccccccccccccccc---------------c
Confidence 8999999999 999999999993 3456899999999989999999985 35666665431 2
Q ss_pred hhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhh
Q psy7047 178 KIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPL 222 (469)
Q Consensus 178 ~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~l 222 (469)
+.+..++.|+.. ...+.+++++||..+.|++++-+-+.+..
T Consensus 65 g~~~~~n~~~~~----a~~~~i~~ld~D~~~~~~~l~~l~~~~~~ 105 (169)
T PF00535_consen 65 GFSAARNRGIKH----AKGEYILFLDDDDIISPDWLEELVEALEK 105 (169)
T ss_dssp HHHHHHHHHHHH------SSEEEEEETTEEE-TTHHHHHHHHHHH
T ss_pred cccccccccccc----cceeEEEEeCCCceEcHHHHHHHHHHHHh
Confidence 455544455554 35569999999999999988666665554
No 11
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=98.72 E-value=2.2e-07 Score=83.59 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=98.9
Q ss_pred EEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc----ceEeecCCCCCccCCccccccccc
Q psy7047 102 IVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ----VHLIQQPNQQDIAVPPKEKKFKGY 176 (469)
Q Consensus 102 VlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~----i~~i~~~d~~~i~~~~~~k~~~~y 176 (469)
|||.+||+++ +++||+||+++.. ..++|+|..||+...+.+.++.+... +.++.+++ .+
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~--~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~----------~~---- 64 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSI--LPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQED----------EG---- 64 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccC--CCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCC----------cc----
Confidence 6899999999 9999999999852 34689999999999888888877541 22222211 01
Q ss_pred hhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCCCCCCcccCCCCCcceeecC
Q psy7047 177 FKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRTD 256 (469)
Q Consensus 177 ~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNdnG~~~~vd~~d~~~lyRsd 256 (469)
.+.+...+.|+ +....+.+++|++|+.++|+|++-+.+.+ ++.+. +.|-........ .. .
T Consensus 65 ~~~~~~~n~g~----~~a~g~~i~~lD~D~~~~~~~l~~~~~~~-----~~~~~-v~g~~~~~~~~~------~~----~ 124 (182)
T cd06420 65 FRKAKIRNKAI----AAAKGDYLIFIDGDCIPHPDFIADHIELA-----EPGVF-LSGSRVLLNEKL------TE----R 124 (182)
T ss_pred hhHHHHHHHHH----HHhcCCEEEEEcCCcccCHHHHHHHHHHh-----CCCcE-Eecceeeccccc------ce----e
Confidence 13343333344 33378999999999999999988665544 33343 333222111110 00 2
Q ss_pred CCCccccccchhhHHHhh---cC---CCCCCccchhccccccCCCceeee
Q psy7047 257 FFPGLGWMLTKDLWDEIS---VK---WPRSYWDDWIRQPEQRKDRACIRP 300 (469)
Q Consensus 257 ffPglGWmtwrr~W~El~---pk---WP~~~WD~w~r~~~~r~gr~cI~P 300 (469)
.+.|-+.+.+|+.|.+.. +. |-...+|.++|--...-...++.|
T Consensus 125 ~~~~~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~~~ 174 (182)
T cd06420 125 GIRGCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLKF 174 (182)
T ss_pred EeccceEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEEEecc
Confidence 344566778888887532 22 223355566655322223466665
No 12
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=98.69 E-value=2.7e-07 Score=85.62 Aligned_cols=165 Identities=14% Similarity=0.209 Sum_probs=105.5
Q ss_pred cceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc-----ceEeecCCCCCccCCccccc
Q psy7047 99 AIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ-----VHLIQQPNQQDIAVPPKEKK 172 (469)
Q Consensus 99 ~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~-----i~~i~~~d~~~i~~~~~~k~ 172 (469)
.+-|+|.+||... +.++|++|+++.. ..++|+|..||+.+++.+.++.+..+ +.++.+. ++
T Consensus 2 ~vsviip~~n~~~~l~~~L~sl~~q~~--~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-----------~~ 68 (196)
T cd02520 2 GVSILKPLCGVDPNLYENLESFFQQDY--PKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGG-----------EK 68 (196)
T ss_pred CeEEEEecCCCCccHHHHHHHHHhccC--CCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecC-----------Cc
Confidence 4789999999999 9999999999753 23789999999998888888776532 2222221 11
Q ss_pred cccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCCCCCCcccCCCCCcce
Q psy7047 173 FKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLL 252 (469)
Q Consensus 173 ~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNdnG~~~~vd~~d~~~l 252 (469)
.+...+ +. +++..+.....+.++++++|+.++|++++.+.+.+ .++.+.+|+|.
T Consensus 69 ~g~~~~-~~----~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~----~~~~~~~v~~~----------------- 122 (196)
T cd02520 69 VGINPK-VN----NLIKGYEEARYDILVISDSDISVPPDYLRRMVAPL----MDPGVGLVTCL----------------- 122 (196)
T ss_pred CCCCHh-HH----HHHHHHHhCCCCEEEEECCCceEChhHHHHHHHHh----hCCCCCeEEee-----------------
Confidence 111011 11 33334443478999999999999999998777654 36778888876
Q ss_pred eecCCCCccccccchhhHHHhhc--CCCCC-CccchhccccccCCCceeeeCccccc
Q psy7047 253 YRTDFFPGLGWMLTKDLWDEISV--KWPRS-YWDDWIRQPEQRKDRACIRPEISRTR 306 (469)
Q Consensus 253 yRsdffPglGWmtwrr~W~El~p--kWP~~-~WD~w~r~~~~r~gr~cI~PeisRt~ 306 (469)
+..|-+.|+.|++|+++.. ..+.. ..|.++-....++|..+.+..-..+.
T Consensus 123 ----~~~g~~~~~r~~~~~~~ggf~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~~~~ 175 (196)
T cd02520 123 ----CAFGKSMALRREVLDAIGGFEAFADYLAEDYFLGKLIWRLGYRVVLSPYVVMQ 175 (196)
T ss_pred ----cccCceeeeEHHHHHhccChHHHhHHHHHHHHHHHHHHHcCCeEEEcchheec
Confidence 2344566777777776532 11111 23333333346667555544444444
No 13
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.65 E-value=5.1e-07 Score=82.59 Aligned_cols=179 Identities=16% Similarity=0.218 Sum_probs=107.0
Q ss_pred cceEEEEecCCh-h-HHHHHHHHHhcCCCCCCCcEEEEeCCCChh-HHHHHHhhhh---cceEeecCCCCCccCCccccc
Q psy7047 99 AIAIVVIACNRV-T-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEA-TTNVIKSYQN---QVHLIQQPNQQDIAVPPKEKK 172 (469)
Q Consensus 99 ~iPVlV~a~NRP-d-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e-~~~vv~~y~~---~i~~i~~~d~~~i~~~~~~k~ 172 (469)
.+-|++.+||+. + +.+||+||+++.. ..++|+|..||+... +..+++.+.. ++.++.++. +
T Consensus 2 ~vsiii~~~n~~~~~l~~~l~sl~~q~~--~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 68 (202)
T cd04184 2 LISIVMPVYNTPEKYLREAIESVRAQTY--PNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREE-----------N 68 (202)
T ss_pred eEEEEEecccCcHHHHHHHHHHHHhCcC--CCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEccc-----------C
Confidence 477999999999 9 9999999999753 236899999998764 4555665542 233333211 1
Q ss_pred cccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCC----CCCCc--ccCC
Q psy7047 173 FKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWND----NGKPT--LIDT 246 (469)
Q Consensus 173 ~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNd----nG~~~--~vd~ 246 (469)
.+.+. |++..+.....+.++++++|+.+.||++.-+.+.+ +.++.+..|.+.-. ++... ....
T Consensus 69 ----~g~~~----a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 137 (202)
T cd04184 69 ----GGISA----ATNSALELATGEFVALLDHDDELAPHALYEVVKAL---NEHPDADLIYSDEDKIDEGGKRSEPFFKP 137 (202)
T ss_pred ----CCHHH----HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHH---HhCCCCCEEEccHHhccCCCCEeccccCC
Confidence 12343 44555554578999999999999999997666654 34555444322111 11100 0000
Q ss_pred CCCcceeecCCCCccccccchhhHHHhh---cCCC-CCCccchhccccccCCCceeeeCc
Q psy7047 247 SSSDLLYRTDFFPGLGWMLTKDLWDEIS---VKWP-RSYWDDWIRQPEQRKDRACIRPEI 302 (469)
Q Consensus 247 ~d~~~lyRsdffPglGWmtwrr~W~El~---pkWP-~~~WD~w~r~~~~r~gr~cI~Pei 302 (469)
.-....+....+.+-+.+..|++|+++. +... ...||.|+|... ...+.+..|++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~r~~~~~iggf~~~~~~~eD~~l~~rl~~-~g~~~~~~~~~ 196 (202)
T cd04184 138 DWSPDLLLSQNYIGHLLVYRRSLVRQVGGFREGFEGAQDYDLVLRVSE-HTDRIAHIPRV 196 (202)
T ss_pred CCCHHHhhhcCCccceEeEEHHHHHHhCCCCcCcccchhHHHHHHHHh-ccceEEEccHh
Confidence 0011122233345567788999999764 3322 236888887722 23356777764
No 14
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.63 E-value=5.2e-07 Score=75.81 Aligned_cols=129 Identities=20% Similarity=0.303 Sum_probs=88.4
Q ss_pred EEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc---ceEeecCCCCCccCCccccccccch
Q psy7047 102 IVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ---VHLIQQPNQQDIAVPPKEKKFKGYF 177 (469)
Q Consensus 102 VlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~---i~~i~~~d~~~i~~~~~~k~~~~y~ 177 (469)
|++.+||++. +..+|++++++.. ....++|..|++.+++.+.+++.... +..+.++. + .
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~----~ 63 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTY--PNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEE-----------N----Q 63 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCc--cceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecC-----------C----C
Confidence 6889999999 9999999999863 23579999999988888887776532 22222211 0 1
Q ss_pred hhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCCCCCCcccCCCCCcceeecCC
Q psy7047 178 KIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRTDF 257 (469)
Q Consensus 178 ~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNdnG~~~~vd~~d~~~lyRsdf 257 (469)
+.+..++.|+... +.+.++++++|..+.|+++..+ +..+..++...++.+.
T Consensus 64 g~~~~~~~~~~~~----~~d~v~~~d~D~~~~~~~~~~~---~~~~~~~~~~~~v~~~---------------------- 114 (156)
T cd00761 64 GLAAARNAGLKAA----RGEYILFLDADDLLLPDWLERL---VAELLADPEADAVGGP---------------------- 114 (156)
T ss_pred ChHHHHHHHHHHh----cCCEEEEECCCCccCccHHHHH---HHHHhcCCCceEEecc----------------------
Confidence 2344334444443 6899999999999999999876 3444555656555554
Q ss_pred CCccccccchhhHHHhhcCCCC
Q psy7047 258 FPGLGWMLTKDLWDEISVKWPR 279 (469)
Q Consensus 258 fPglGWmtwrr~W~El~pkWP~ 279 (469)
.++|..++.|+++....+.
T Consensus 115 ---~~~~~~~~~~~~~~~~~~~ 133 (156)
T cd00761 115 ---GNLLFRRELLEEIGGFDEA 133 (156)
T ss_pred ---chheeeHHHHHHhCCcchH
Confidence 5666777777766554443
No 15
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=98.59 E-value=7.4e-07 Score=84.79 Aligned_cols=115 Identities=21% Similarity=0.342 Sum_probs=83.1
Q ss_pred CCcceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc-ceEeecCCCCCccCCccccccc
Q psy7047 97 KDAIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ-VHLIQQPNQQDIAVPPKEKKFK 174 (469)
Q Consensus 97 ~~~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~-i~~i~~~d~~~i~~~~~~k~~~ 174 (469)
.+.+.|+|.+||+.. +.++|++|+++......++|+|..||+.+++.++++++... +.++.... +.
T Consensus 28 ~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~i~~~~-----------~~- 95 (251)
T cd06439 28 LPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKLLRFPE-----------RR- 95 (251)
T ss_pred CCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEEEEcCC-----------CC-
Confidence 446899999999999 99999999998655445789999999999999999988643 44443321 11
Q ss_pred cchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEec
Q psy7047 175 GYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSA 234 (469)
Q Consensus 175 ~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISA 234 (469)
+.+. |++..+.....+.++++++|+.+.|++++=+. ..++ ++.+.+|++
T Consensus 96 ---g~~~----a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~---~~~~-~~~~~~v~~ 144 (251)
T cd06439 96 ---GKAA----ALNRALALATGEIVVFTDANALLDPDALRLLV---RHFA-DPSVGAVSG 144 (251)
T ss_pred ---ChHH----HHHHHHHHcCCCEEEEEccccCcCHHHHHHHH---HHhc-CCCccEEEe
Confidence 1222 44444444467999999999999999886544 4444 456666554
No 16
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=98.57 E-value=9.4e-07 Score=87.65 Aligned_cols=181 Identities=12% Similarity=0.113 Sum_probs=109.9
Q ss_pred EEEEecCCh-h-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhh-----hhcceEeecCCCCCccCCccccccc
Q psy7047 102 IVVIACNRV-T-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSY-----QNQVHLIQQPNQQDIAVPPKEKKFK 174 (469)
Q Consensus 102 VlV~a~NRP-d-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y-----~~~i~~i~~~d~~~i~~~~~~k~~~ 174 (469)
|+|.+||++ + |.+||+||+++.+....++|+|..||+.+++.+.+.++ ...++++..+. |
T Consensus 2 IIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~-----------n-- 68 (299)
T cd02510 2 VIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKK-----------R-- 68 (299)
T ss_pred EEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCC-----------C--
Confidence 899999999 9 99999999998654434689999999998887776442 12344444321 1
Q ss_pred cchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecC--------CCCCCCc----
Q psy7047 175 GYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAW--------NDNGKPT---- 242 (469)
Q Consensus 175 ~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAw--------NdnG~~~---- 242 (469)
.+.++..+.|+.. ...+.+++|++|+++.|++++- ++..+..++........ ...+...
T Consensus 69 --~G~~~a~N~g~~~----A~gd~i~fLD~D~~~~~~wL~~---ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~ 139 (299)
T cd02510 69 --EGLIRARIAGARA----ATGDVLVFLDSHCEVNVGWLEP---LLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARG 139 (299)
T ss_pred --CCHHHHHHHHHHH----ccCCEEEEEeCCcccCccHHHH---HHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeE
Confidence 2345444455554 3689999999999999999855 44444555554322211 1111100
Q ss_pred ----------ccC------CCCCcceeecCCCCccccccchhhHHHhh---cCCC---CCCccchhccccccCCCce-ee
Q psy7047 243 ----------LID------TSSSDLLYRTDFFPGLGWMLTKDLWDEIS---VKWP---RSYWDDWIRQPEQRKDRAC-IR 299 (469)
Q Consensus 243 ----------~vd------~~d~~~lyRsdffPglGWmtwrr~W~El~---pkWP---~~~WD~w~r~~~~r~gr~c-I~ 299 (469)
... ..++...+++..++|-.-|+.|+.|+++. +... ....|.++|- ...|..+ ..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~--~~~G~~i~~~ 217 (299)
T cd02510 140 GFDWSLHFKWLPLPEEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKV--WQCGGSIEIV 217 (299)
T ss_pred EecccceeccccCCHHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHH--HHcCCeEEEe
Confidence 000 00112335566677777889999999763 3322 2345556655 4455544 45
Q ss_pred eCcccccc
Q psy7047 300 PEISRTRT 307 (469)
Q Consensus 300 PeisRt~~ 307 (469)
|+ +++.|
T Consensus 218 p~-a~v~H 224 (299)
T cd02510 218 PC-SRVGH 224 (299)
T ss_pred ec-cEEEE
Confidence 66 45554
No 17
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=98.52 E-value=1.3e-06 Score=81.51 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=81.7
Q ss_pred cceEEEEecCCh-h-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc--ceEeecCCCCCccCCccccccc
Q psy7047 99 AIAIVVIACNRV-T-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ--VHLIQQPNQQDIAVPPKEKKFK 174 (469)
Q Consensus 99 ~iPVlV~a~NRP-d-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~--i~~i~~~d~~~i~~~~~~k~~~ 174 (469)
.+-|++.+||++ + ++++|+||+++....++++|+|..||+.+++.++++.+..+ +.++.... +-
T Consensus 2 ~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~-----------~~- 69 (234)
T cd06421 2 TVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYLTRPD-----------NR- 69 (234)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceEEEeCC-----------CC-
Confidence 478999999985 7 99999999998655444789999999999999999988642 12222211 10
Q ss_pred cchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEec
Q psy7047 175 GYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSA 234 (469)
Q Consensus 175 ~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISA 234 (469)
+ .-+...+.|+.. .+++.++++++|..+.||++.-+.+. +.+++.+.++++
T Consensus 70 ~--~~~~~~n~~~~~----a~~d~i~~lD~D~~~~~~~l~~l~~~---~~~~~~~~~v~~ 120 (234)
T cd06421 70 H--AKAGNLNNALAH----TTGDFVAILDADHVPTPDFLRRTLGY---FLDDPKVALVQT 120 (234)
T ss_pred C--CcHHHHHHHHHh----CCCCEEEEEccccCcCccHHHHHHHH---HhcCCCeEEEec
Confidence 1 112222334433 37999999999999999987655554 455688888876
No 18
>PRK11204 N-glycosyltransferase; Provisional
Probab=98.51 E-value=1.1e-06 Score=91.30 Aligned_cols=115 Identities=19% Similarity=0.275 Sum_probs=85.6
Q ss_pred CCcceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc---ceEeecCCCCCccCCccccc
Q psy7047 97 KDAIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ---VHLIQQPNQQDIAVPPKEKK 172 (469)
Q Consensus 97 ~~~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~---i~~i~~~d~~~i~~~~~~k~ 172 (469)
.+.+.|+|.+||+.+ +.+||+||+++... .++|+|..||+.+++.++++++..+ +.++...+ |
T Consensus 53 ~p~vsViIp~yne~~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~-----------n 119 (420)
T PRK11204 53 YPGVSILVPCYNEGENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAE-----------N 119 (420)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCC-----------C
Confidence 356899999999999 99999999987533 4689999999999998888877533 33333211 1
Q ss_pred cccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecC
Q psy7047 173 FKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAW 235 (469)
Q Consensus 173 ~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAw 235 (469)
.+.+. |++..++..+++.++++++|..+.||++..+.+ .++.|+.+.+|+|-
T Consensus 120 ----~Gka~----aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~---~~~~~~~v~~v~g~ 171 (420)
T PRK11204 120 ----QGKAN----ALNTGAAAARSEYLVCIDGDALLDPDAAAYMVE---HFLHNPRVGAVTGN 171 (420)
T ss_pred ----CCHHH----HHHHHHHHcCCCEEEEECCCCCCChhHHHHHHH---HHHhCCCeEEEECC
Confidence 12243 344434434799999999999999999866654 45679999999874
No 19
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.50 E-value=2.3e-06 Score=85.83 Aligned_cols=191 Identities=14% Similarity=0.176 Sum_probs=109.9
Q ss_pred CCcceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCCh--hHHHHHHhhh-hcceEeecCCCCCccCCccccc
Q psy7047 97 KDAIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHE--ATTNVIKSYQ-NQVHLIQQPNQQDIAVPPKEKK 172 (469)
Q Consensus 97 ~~~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~--e~~~vv~~y~-~~i~~i~~~d~~~i~~~~~~k~ 172 (469)
.+.+-|++.+||+++ +.++|+||+++.. ..++|+|..||+.. .+.+.++.+. .++.++.++. |
T Consensus 4 ~p~VSVIip~yN~~~~l~~~l~Svl~Qt~--~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~~-----------n 70 (279)
T PRK10018 4 NPLISIYMPTWNRQQLAIRAIKSVLRQDY--SNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHNDI-----------N 70 (279)
T ss_pred CCEEEEEEEeCCCHHHHHHHHHHHHhCCC--CCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECCC-----------C
Confidence 456899999999999 9999999999853 34789999999973 2233334333 2344444321 1
Q ss_pred cccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCe-eEEec-CCCCC----CCcccC-
Q psy7047 173 FKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTL-WCVSA-WNDNG----KPTLID- 245 (469)
Q Consensus 173 ~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI-~~ISA-wNdnG----~~~~vd- 245 (469)
.+.+...+.||. ....+.+++|++|....|+.++=+-+.+.. .+.. ++.+. .-..| ......
T Consensus 71 ----~G~~~a~N~gi~----~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (279)
T PRK10018 71 ----SGACAVRNQAIM----LAQGEYITGIDDDDEWTPNRLSVFLAHKQQ---LVTHAFLYANDYVCQGEVYSQPASLPL 139 (279)
T ss_pred ----CCHHHHHHHHHH----HcCCCEEEEECCCCCCCccHHHHHHHHHHh---CCCccEEEccceeecCcccccccccCC
Confidence 234443334444 347899999999999999998755444332 1111 11111 00011 100000
Q ss_pred -CC---CCcceeecCCCCccccccchhhHH--HhhcCCCC-CCccchhccccccCCCceeeeCccccccccCCCC
Q psy7047 246 -TS---SSDLLYRTDFFPGLGWMLTKDLWD--EISVKWPR-SYWDDWIRQPEQRKDRACIRPEISRTRTFSAGSI 313 (469)
Q Consensus 246 -~~---d~~~lyRsdffPglGWmtwrr~W~--El~pkWP~-~~WD~w~r~~~~r~gr~cI~PeisRt~~~s~~~~ 313 (469)
.. ....+++..+.+... ++++.... .+.+..+. ..||.|+|-- .+-|+.+..|+...++|...||+
T Consensus 140 ~p~~~~~~~~~~~~n~ig~~~-~~~~~~~~~~~fd~~~~~~eDydlwlrl~-~~~~~~~~~~~~l~~y~~~~~s~ 212 (279)
T PRK10018 140 YPKSPYSRRLFYKRNIIGNQV-FTWAWRFKECLFDTELKAAQDYDIFLRMV-VEYGEPWKVEEATQILHINHGEM 212 (279)
T ss_pred CCCCCCCHHHHHHhcCcCcee-eehhhhhhhcccCCCCCccccHHHHHHHH-HhcCceEeeccceEEEEcCCCCc
Confidence 00 011233344444433 44443333 23455553 5899999983 23455666899888887766665
No 20
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.47 E-value=2.1e-06 Score=78.67 Aligned_cols=162 Identities=12% Similarity=0.145 Sum_probs=99.7
Q ss_pred EEEEecCCh--h-HHHHHHHHHhcCCCCCCCcEEEEeCCC-ChhHHHHHHhhhhc--ceEeecCCCCCccCCcccccccc
Q psy7047 102 IVVIACNRV--T-VSRCLDLLIKYRPSVEKFPIIVSQDCN-HEATTNVIKSYQNQ--VHLIQQPNQQDIAVPPKEKKFKG 175 (469)
Q Consensus 102 VlV~a~NRP--d-l~RtLesLlk~rp~~~~~~LiVsqDG~-~~e~~~vv~~y~~~--i~~i~~~d~~~i~~~~~~k~~~~ 175 (469)
|++.+||+. + +.+||+||+++... .+.|+|..||+ .+.+.+++++|..+ +.++..+. |
T Consensus 2 viip~~n~~~~~~l~~~l~Sl~~q~~~--~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~-----------n--- 65 (201)
T cd04195 2 VLMSVYIKEKPEFLREALESILKQTLP--PDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEK-----------N--- 65 (201)
T ss_pred EEEEccccchHHHHHHHHHHHHhcCCC--CcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCc-----------c---
Confidence 788999985 6 99999999998532 35799999998 55677888887542 33443321 1
Q ss_pred chhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCC----CCCCcccCCCCCc-
Q psy7047 176 YFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWND----NGKPTLIDTSSSD- 250 (469)
Q Consensus 176 y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNd----nG~~~~vd~~d~~- 250 (469)
.+++.-.+.|+. .-+.+.++++++|+.+.|++++-+-+ .+++++.+..++|.-. ++....... .+.
T Consensus 66 -~G~~~a~N~g~~----~a~gd~i~~lD~Dd~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 136 (201)
T cd04195 66 -RGLGKALNEGLK----HCTYDWVARMDTDDISLPDRFEKQLD---FIEKNPEIDIVGGGVLEFDSDGNDIGKRR-LPTS 136 (201)
T ss_pred -ccHHHHHHHHHH----hcCCCEEEEeCCccccCcHHHHHHHH---HHHhCCCeEEEcccEEEECCCCCeecccc-CCCC
Confidence 133433333443 23689999999999999998855544 4556766655555432 221111000 010
Q ss_pred ------ceeecCCCCccccccchhhHHHhhc---CCCCCCccchhcc
Q psy7047 251 ------LLYRTDFFPGLGWMLTKDLWDEISV---KWPRSYWDDWIRQ 288 (469)
Q Consensus 251 ------~lyRsdffPglGWmtwrr~W~El~p---kWP~~~WD~w~r~ 288 (469)
...+...+.+-+.+..|++++++.. ......|+.|+|-
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~rr~~~~~~g~~~~~~~~eD~~~~~r~ 183 (201)
T cd04195 137 HDDILKFARRRSPFNHPTVMFRKSKVLAVGGYQDLPLVEDYALWARM 183 (201)
T ss_pred HHHHHHHhccCCCCCChHHhhhHHHHHHcCCcCCCCCchHHHHHHHH
Confidence 0112334455678899999986432 2223467777775
No 21
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=98.45 E-value=1.9e-06 Score=80.85 Aligned_cols=109 Identities=15% Similarity=0.251 Sum_probs=77.6
Q ss_pred ceEEEEecCCh-h-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhh--cceEeecCCCCCccCCcccccccc
Q psy7047 100 IAIVVIACNRV-T-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQN--QVHLIQQPNQQDIAVPPKEKKFKG 175 (469)
Q Consensus 100 iPVlV~a~NRP-d-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~--~i~~i~~~d~~~i~~~~~~k~~~~ 175 (469)
+-|+|.+||++ + +.+||++|+++. .+.|+|..||+.+++.+.+..... .+.++.. . +
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~----~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~~~-~-----------~--- 62 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQK----PLEIIVVTDGDDEPYLSILSQTVKYGGIFVITV-P-----------H--- 62 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCC----CCEEEEEeCCCChHHHHHHHhhccCCcEEEEec-C-----------C---
Confidence 56999999999 8 999999999985 357999999999887776533221 1222211 0 1
Q ss_pred chhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCC
Q psy7047 176 YFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWN 236 (469)
Q Consensus 176 y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwN 236 (469)
.+.+. |++..+...+.+.++++++|+.+.|+++ ..++..++ ++.+.+|++-.
T Consensus 63 -~g~~~----a~n~g~~~a~~d~v~~lD~D~~~~~~~l---~~l~~~~~-~~~v~~v~~~~ 114 (235)
T cd06434 63 -PGKRR----ALAEGIRHVTTDIVVLLDSDTVWPPNAL---PEMLKPFE-DPKVGGVGTNQ 114 (235)
T ss_pred -CChHH----HHHHHHHHhCCCEEEEECCCceeChhHH---HHHHHhcc-CCCEeEEcCce
Confidence 11232 3443344347999999999999999986 56666666 88999998743
No 22
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.39 E-value=3.9e-06 Score=78.80 Aligned_cols=177 Identities=14% Similarity=0.167 Sum_probs=102.8
Q ss_pred EEEEecCCh-h-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhh-hhcceEeecCCCCCccCCccccccccchh
Q psy7047 102 IVVIACNRV-T-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSY-QNQVHLIQQPNQQDIAVPPKEKKFKGYFK 178 (469)
Q Consensus 102 VlV~a~NRP-d-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y-~~~i~~i~~~d~~~i~~~~~~k~~~~y~~ 178 (469)
++|.+||+. + +.+||+||+++ . ..|+|..||+.+.+... .++ ...+.++..+. | .+
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q-~----~~iivvDn~s~~~~~~~-~~~~~~~i~~i~~~~-----------n----~G 59 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ-V----DKVVVVDNSSGNDIELR-LRLNSEKIELIHLGE-----------N----LG 59 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc-C----CEEEEEeCCCCccHHHH-hhccCCcEEEEECCC-----------c----ee
Confidence 478899999 9 99999999987 2 36888888877655444 333 23344444322 1 23
Q ss_pred hhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCC--CCCCcc--c-C--------
Q psy7047 179 IARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWND--NGKPTL--I-D-------- 245 (469)
Q Consensus 179 Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNd--nG~~~~--v-d-------- 245 (469)
.+.-++.|+...-. .+++.++++++|..+.|+++.-+......++.++.+.++++--. ++.... . .
T Consensus 60 ~~~a~N~g~~~a~~-~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (237)
T cd02526 60 IAKALNIGIKAALE-NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQ 138 (237)
T ss_pred hHHhhhHHHHHHHh-CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceec
Confidence 44434445554322 15799999999999999999887533445667777766654211 111000 0 0
Q ss_pred CCCCcceeecCCCCccccccchhhHHHhhcCCCC------CCccchhccccccCC-CceeeeCcc
Q psy7047 246 TSSSDLLYRTDFFPGLGWMLTKDLWDEISVKWPR------SYWDDWIRQPEQRKD-RACIRPEIS 303 (469)
Q Consensus 246 ~~d~~~lyRsdffPglGWmtwrr~W~El~pkWP~------~~WD~w~r~~~~r~g-r~cI~Peis 303 (469)
..........+...+-|-+..|++++++.. |+. ...|.++|- .++| +....|++-
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~rr~~~~~~gg-fd~~~~~~~eD~d~~~r~--~~~G~~~~~~~~~~ 200 (237)
T cd02526 139 KEGEEGLKEVDFLITSGSLISLEALEKVGG-FDEDLFIDYVDTEWCLRA--RSKGYKIYVVPDAV 200 (237)
T ss_pred ccccCCceEeeeeeccceEEcHHHHHHhCC-CCHHHcCccchHHHHHHH--HHcCCcEEEEcCeE
Confidence 000011122333345577888999987643 322 134444444 5666 455666654
No 23
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.38 E-value=2.8e-06 Score=78.66 Aligned_cols=100 Identities=17% Similarity=0.257 Sum_probs=69.2
Q ss_pred EEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhh-----hcceEeecCCCCCccCCcccccccc
Q psy7047 102 IVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQ-----NQVHLIQQPNQQDIAVPPKEKKFKG 175 (469)
Q Consensus 102 VlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~-----~~i~~i~~~d~~~i~~~~~~k~~~~ 175 (469)
|+|.+||+++ +.+||+||+++......++|+|..||+.+++.++++ +. .++.++.... ..+
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~---------~~~--- 67 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSR---------VSI--- 67 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccC---------ccc---
Confidence 6899999999 999999999986544457899999999888888776 22 1233332211 011
Q ss_pred chhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhh
Q psy7047 176 YFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGT 219 (469)
Q Consensus 176 y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~ 219 (469)
.+.+. |++..+.....+.++++++|..++||+++-+.+.
T Consensus 68 -~g~~~----a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~ 106 (229)
T cd04192 68 -SGKKN----ALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAF 106 (229)
T ss_pred -chhHH----HHHHHHHHhcCCEEEEECCCcccCHHHHHHHHHH
Confidence 12333 3333334347899999999999999988665543
No 24
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=98.38 E-value=4.5e-06 Score=78.26 Aligned_cols=112 Identities=14% Similarity=0.193 Sum_probs=78.1
Q ss_pred ceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc---ceEeecCCCCCccCCcccccccc
Q psy7047 100 IAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ---VHLIQQPNQQDIAVPPKEKKFKG 175 (469)
Q Consensus 100 iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~---i~~i~~~d~~~i~~~~~~k~~~~ 175 (469)
+-|+|.+||+++ +.++|++|+++......++|+|..||+.+++.+.++.+..+ +.++..+ +
T Consensus 2 ~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~----------~----- 66 (249)
T cd02525 2 VSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNP----------K----- 66 (249)
T ss_pred EEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCC----------C-----
Confidence 579999999999 99999999987543356789999999999998888887643 2222211 1
Q ss_pred chhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecC
Q psy7047 176 YFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAW 235 (469)
Q Consensus 176 y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAw 235 (469)
.+.+.-.+.|+.. .+.+.+++++||+.+.|++++-+.+ .++ ++.+.++.|.
T Consensus 67 -~~~~~a~N~g~~~----a~~d~v~~lD~D~~~~~~~l~~~~~---~~~-~~~~~~v~~~ 117 (249)
T cd02525 67 -RIQSAGLNIGIRN----SRGDIIIRVDAHAVYPKDYILELVE---ALK-RTGADNVGGP 117 (249)
T ss_pred -CCchHHHHHHHHH----hCCCEEEEECCCccCCHHHHHHHHH---HHh-cCCCCEEecc
Confidence 0123323344443 3799999999999999999876665 333 3344445443
No 25
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=98.36 E-value=5.8e-06 Score=79.11 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=82.5
Q ss_pred cceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc--ceEeecCCCCCccCCcccccccc
Q psy7047 99 AIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ--VHLIQQPNQQDIAVPPKEKKFKG 175 (469)
Q Consensus 99 ~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~--i~~i~~~d~~~i~~~~~~k~~~~ 175 (469)
.+-|+|.+||..+ +.++|+||+++......++|+|..||+.+++.++++.+... +.++..+ ..++
T Consensus 2 ~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~---------~~~~--- 69 (241)
T cd06427 2 VYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVP---------PSQP--- 69 (241)
T ss_pred eEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEec---------CCCC---
Confidence 4789999999999 99999999987533345689999999999999999887531 2221111 1111
Q ss_pred chhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhc-CCCCeeEEecC
Q psy7047 176 YFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLI-SDPTLWCVSAW 235 (469)
Q Consensus 176 y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~-~D~sI~~ISAw 235 (469)
.+.+. |++..+...+.+.++++++|+.+.||++. +++..++ .++.+.++++.
T Consensus 70 -~G~~~----a~n~g~~~a~gd~i~~~DaD~~~~~~~l~---~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 70 -RTKPK----ACNYALAFARGEYVVIYDAEDAPDPDQLK---KAVAAFARLDDKLACVQAP 122 (241)
T ss_pred -CchHH----HHHHHHHhcCCCEEEEEcCCCCCChHHHH---HHHHHHHhcCCCEEEEeCc
Confidence 12333 44445554578999999999999999986 4444444 45888888764
No 26
>KOG2791|consensus
Probab=98.33 E-value=1.7e-05 Score=81.56 Aligned_cols=219 Identities=21% Similarity=0.343 Sum_probs=136.2
Q ss_pred CcceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhh-hcceEeec-----------C--CCC
Q psy7047 98 DAIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQ-NQVHLIQQ-----------P--NQQ 162 (469)
Q Consensus 98 ~~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~-~~i~~i~~-----------~--d~~ 162 (469)
..+-++|-+-|||. |+-++|||.+.++ .+..-|++|.||..++..+.|+... .+|.-|-. | +.+
T Consensus 117 ~~~vlV~qVHnRp~Ylr~lveSlrk~kG-I~~tLlifSHD~~~~eiN~~I~~i~Fc~V~QiF~Pys~qlypt~FPG~~p~ 195 (455)
T KOG2791|consen 117 DRVVLVLQVHNRPQYLRVLVESLRKVKG-ISETLLIFSHDGYFEEINRIIESIKFCQVKQIFSPYSPQLYPTSFPGVTPN 195 (455)
T ss_pred ceEEEEEEEcCcHHHHHHHHHHHHhccC-ccceEEEEeccchHHHHHHHHhhcccceeEEEecCCCcccccCcCCCCCch
Confidence 35667777899999 9999999999976 5567899999999999888888754 22211111 0 111
Q ss_pred CccC--C--------c----cccccccch-----hhhhhHHHHHHHhhhhc-----cccEEEEEccCcccCchHHHHHHh
Q psy7047 163 DIAV--P--------P----KEKKFKGYF-----KIARHYGWALNQMFYEF-----NFSTAIVIEDDLDIAPDFFEYFLG 218 (469)
Q Consensus 163 ~i~~--~--------~----~~k~~~~y~-----~Ia~Hyk~aLs~vF~~~-----~~~~vIILEDDLvvSPDFf~Yf~~ 218 (469)
+++. + . .-.+++.|+ .+..|.=|-++.||+.. ..+.+.+||+|--++|||++-+..
T Consensus 196 DCp~kmkk~~a~k~~C~n~ssPD~yGnyR~ak~~q~KHHWWWkmnfVwd~ve~~~~~~g~iLflEEDH~LaPdayhv~~~ 275 (455)
T KOG2791|consen 196 DCPNKMKKGDAAKGHCENNSSPDQYGNYRSAKIVQLKHHWWWKMNFVWDGVEETKGHEGHILFLEEDHFLAPDAYHVIQT 275 (455)
T ss_pred hcccccccchhhhcCCcCCCCcccccCccchhhhhhhhhhhHhHHHHHHHHHHhccCCceEEEEecccccChhHHHHHHH
Confidence 1111 0 0 001233332 35567778999999843 357899999999999999998876
Q ss_pred hhhhh-cCCCCeeEEecCCCCCCCcc-cCCCCCcceeecCCCCccccccchhhHHHhhc------CCCCCCcc--chhcc
Q psy7047 219 TYPLL-ISDPTLWCVSAWNDNGKPTL-IDTSSSDLLYRTDFFPGLGWMLTKDLWDEISV------KWPRSYWD--DWIRQ 288 (469)
Q Consensus 219 ~L~ly-~~D~sI~~ISAwNdnG~~~~-vd~~d~~~lyRsdffPglGWmtwrr~W~El~p------kWP~~~WD--~w~r~ 288 (469)
+-.+= +.-|.-+.+|-=-+...... -|..+....+-+ ++..|-++.|.+|+.+.. +|..=.|| .|--.
T Consensus 276 l~~lkp~~Cp~C~~~sLg~y~s~sryGqD~~~v~~w~s~--~hNmG~al~rn~wqki~~c~~~FC~~DDYNWDwtl~~~~ 353 (455)
T KOG2791|consen 276 LTRLKPAKCPDCFAASLGPYDSKSRYGQDEGLVSLWASR--MHNMGYALNRNVWQKIHQCAREFCFFDDYNWDWTLWATV 353 (455)
T ss_pred HHhcCcccCCcceeeecccccccccccccccceeehhhh--cccchhhhhHHHHHHHHHhHHhhcccccCCcceeehhhh
Confidence 54322 12333333332111000000 011122233333 567999999999996644 45555454 22211
Q ss_pred -ccccCCCceeeeCccccccccCCCCCcccccCCcccccccccccccccccccch
Q psy7047 289 -PEQRKDRACIRPEISRTRTFSAGSISPVVTKLPMKVSFYTRTFGKIGVSNGMYF 342 (469)
Q Consensus 289 -~~~r~gr~cI~PeisRt~~~s~~~~~~~~~~~ni~~~~~~~~fG~~g~s~g~~f 342 (469)
+.--+-=..|+|.++|+. |||+=|.|++.-.
T Consensus 354 ~~clp~~~~vl~~~~pr~~-----------------------H~GdCG~H~~~~c 385 (455)
T KOG2791|consen 354 FPCLPSPVYVLRGPRPRAV-----------------------HFGDCGLHQGRGC 385 (455)
T ss_pred ccccCcceEEeecCCCceE-----------------------EecccccccCCCC
Confidence 444455578999999999 8999999987433
No 27
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=98.31 E-value=8.6e-06 Score=86.21 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=85.6
Q ss_pred CCcceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc---ceEeecCCCCCccCCccccc
Q psy7047 97 KDAIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ---VHLIQQPNQQDIAVPPKEKK 172 (469)
Q Consensus 97 ~~~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~---i~~i~~~d~~~i~~~~~~k~ 172 (469)
.+.+.|+|.+||..+ +.+||++|+++.......+|+|..||+.+++.++++++..+ +..... +++
T Consensus 48 ~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~-----------~~~ 116 (439)
T TIGR03111 48 LPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYM-----------NSD 116 (439)
T ss_pred CCCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEe-----------CCC
Confidence 356899999999999 99999999998654445679999999999998887766432 211111 011
Q ss_pred cccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCC
Q psy7047 173 FKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWN 236 (469)
Q Consensus 173 ~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwN 236 (469)
.+.+. |++..++....+.+++++.|..+.||+++- +++.+++|+.+.+++|.-
T Consensus 117 ----~Gka~----AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~---l~~~f~~~~~v~~v~g~~ 169 (439)
T TIGR03111 117 ----QGKAK----ALNAAIYNSIGKYIIHIDSDGKLHKDAIKN---MVTRFENNPDIHAMTGVI 169 (439)
T ss_pred ----CCHHH----HHHHHHHHccCCEEEEECCCCCcChHHHHH---HHHHHHhCCCeEEEEeEE
Confidence 12344 444444444688999999999999999854 455566899999888754
No 28
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=98.30 E-value=1.1e-06 Score=82.12 Aligned_cols=154 Identities=23% Similarity=0.407 Sum_probs=82.0
Q ss_pred cceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHH----hhhh-cceEeecCCCCCccCCccccc
Q psy7047 99 AIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIK----SYQN-QVHLIQQPNQQDIAVPPKEKK 172 (469)
Q Consensus 99 ~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~----~y~~-~i~~i~~~d~~~i~~~~~~k~ 172 (469)
.+.|+|.+||+++ +.++|++|+++.. ..++|+|..|++.+++.+.++ .+.. .+.++..+. +
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~~--~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~---------~-- 68 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQDY--PRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPR---------N-- 68 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSHH--HTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE---------------
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCCC--CCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCC---------C--
Confidence 4789999999999 9999999998742 447899999998877655444 3432 334444321 0
Q ss_pred cccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCC--CCCCcccCCCC--
Q psy7047 173 FKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWND--NGKPTLIDTSS-- 248 (469)
Q Consensus 173 ~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNd--nG~~~~vd~~d-- 248 (469)
. +-..-++ |++..+....++.+++++||..+.|+++.-+.+.+ .++.+.+|.+... ++........+
T Consensus 69 ~-g~~~k~~----a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 139 (228)
T PF13641_consen 69 P-GPGGKAR----ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAF----ADPGVGAVGGPVFPDNDRNWLTRLQDLF 139 (228)
T ss_dssp H-HHHHHHH----HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHH----HBSS--EEEEEEEETTCCCEEEE-TT--
T ss_pred C-CcchHHH----HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHH----HhCCCCeEeeeEeecCCCCHHHHHHHHH
Confidence 0 1012233 44444444469999999999999999987666655 6778887776542 22111000000
Q ss_pred ----------CcceeecCCCCccccccchhhHHHhh
Q psy7047 249 ----------SDLLYRTDFFPGLGWMLTKDLWDEIS 274 (469)
Q Consensus 249 ----------~~~lyRsdffPglGWmtwrr~W~El~ 274 (469)
...-....++.|-|-+..|++++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~~~~g 175 (228)
T PF13641_consen 140 FARWHLRFRSGRRALGVAFLSGSGMLFRRSALEEVG 175 (228)
T ss_dssp S-EETTTS-TT-B----S-B--TEEEEEHHHHHHH-
T ss_pred HhhhhhhhhhhhcccceeeccCcEEEEEHHHHHHhC
Confidence 00112234455677888888888764
No 29
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=98.30 E-value=5.6e-06 Score=75.81 Aligned_cols=104 Identities=14% Similarity=0.218 Sum_probs=73.3
Q ss_pred EEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcceEeecCCCCCccCCccccccccchhhh
Q psy7047 102 IVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFKIA 180 (469)
Q Consensus 102 VlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~y~~Ia 180 (469)
|+|.+||.++ +.+||++|+++......+.|+|-.||+.+++.++++.+...+ +.... ..+ .+.+
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~~~~~--~~~~~---------~~~----~gk~ 65 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAAGATV--LERHD---------PER----RGKG 65 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHcCCeE--EEeCC---------CCC----CCHH
Confidence 6889999999 999999999876433456899999999999999988876442 11111 001 1223
Q ss_pred hhHHHHHHHhhh-hccccEEEEEccCcccCchHHHHHHhhh
Q psy7047 181 RHYGWALNQMFY-EFNFSTAIVIEDDLDIAPDFFEYFLGTY 220 (469)
Q Consensus 181 ~Hyk~aLs~vF~-~~~~~~vIILEDDLvvSPDFf~Yf~~~L 220 (469)
...+.|+..+-. .-+++.+++++.|+.+.|+++.-+.+.+
T Consensus 66 ~aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~ 106 (183)
T cd06438 66 YALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARF 106 (183)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHH
Confidence 323345544321 1158999999999999999998887765
No 30
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.28 E-value=1.7e-05 Score=73.61 Aligned_cols=174 Identities=17% Similarity=0.213 Sum_probs=101.4
Q ss_pred ceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcceEeecCCCCCccCCccccccccchh
Q psy7047 100 IAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFK 178 (469)
Q Consensus 100 iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~y~~ 178 (469)
+-|++.+||++. +.++|+||+++.. ..+.|+|..||+.+++.+.+++. .+.++..+ . +
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~--~~~evivvdd~s~d~~~~~~~~~--~~~~~~~~-----------~------g 59 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNP--LPLEIIVVDGGSTDGTVAIARSA--GVVVISSP-----------K------G 59 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccC--CCcEEEEEeCCCCccHHHHHhcC--CeEEEeCC-----------c------C
Confidence 358999999999 9999999999854 45689999999988888877773 22222211 0 1
Q ss_pred hhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCCCCCCcc---cCCCC-Ccceee
Q psy7047 179 IARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWNDNGKPTL---IDTSS-SDLLYR 254 (469)
Q Consensus 179 Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNdnG~~~~---vd~~d-~~~lyR 254 (469)
.+.-.+.|+.. ...+.++++++|+.+.|++++=+ +.....+..+.+.......+.... ..... ....+.
T Consensus 60 ~~~a~n~g~~~----a~~~~i~~~D~D~~~~~~~l~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (221)
T cd02522 60 RARQMNAGAAA----ARGDWLLFLHADTRLPPDWDAAI---IETLRADGAVAGAFRLRFDDPGPRLRLLELGANLRSRLF 132 (221)
T ss_pred HHHHHHHHHHh----ccCCEEEEEcCCCCCChhHHHHH---HHHhhcCCcEEEEEEeeecCCccchhhhhhcccceeccc
Confidence 22222234433 35799999999999999998765 333444444433322222111110 00000 001111
Q ss_pred cCCCCccccccchhhHHHhhcCCCC----CCccchhccccccCCCceeeeCccc
Q psy7047 255 TDFFPGLGWMLTKDLWDEISVKWPR----SYWDDWIRQPEQRKDRACIRPEISR 304 (469)
Q Consensus 255 sdffPglGWmtwrr~W~El~pkWP~----~~WD~w~r~~~~r~gr~cI~PeisR 304 (469)
...+.+-|-+..|+.|+++.. |+. ..+|.++| ..+.|.....|....
T Consensus 133 ~~~~~~~~~~~r~~~~~~~G~-fd~~~~~ED~d~~~r--~~~~G~~~~~~~~~~ 183 (221)
T cd02522 133 GLPYGDQGLFIRRELFEELGG-FPELPLMEDVELVRR--LRRRGRPALLPSPVT 183 (221)
T ss_pred CCCcCCceEEEEHHHHHHhCC-CCccccccHHHHHHH--HHhCCCEEEcCceee
Confidence 122334577888999987643 322 24555555 466776666654433
No 31
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.28 E-value=9.1e-06 Score=75.53 Aligned_cols=113 Identities=19% Similarity=0.282 Sum_probs=77.7
Q ss_pred EEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc---ceEeecCCCCCccCCccccccccch
Q psy7047 102 IVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ---VHLIQQPNQQDIAVPPKEKKFKGYF 177 (469)
Q Consensus 102 VlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~---i~~i~~~d~~~i~~~~~~k~~~~y~ 177 (469)
|+|.+||+++ |.++|++|.++.. ...++|+|..||+.+++.++++.+..+ +..+.+. ++ .
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~-~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~~-----------~n----~ 64 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALK-GIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRP-----------GK----R 64 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhc-CCCeEEEEEeCCCCCChHHHHHHHHHhCCceEEEecC-----------CC----C
Confidence 6889999999 9999999999753 234689999999998898888888642 2223221 11 1
Q ss_pred hhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCC
Q psy7047 178 KIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWN 236 (469)
Q Consensus 178 ~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwN 236 (469)
+.+.-.+.|+.. ...+.++++++|+.++|+++.-+.+.+ .+.+..+.+-+.+.
T Consensus 65 G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~~~l~~l~~~~--~~~~~~~v~g~~~~ 117 (224)
T cd06442 65 GLGSAYIEGFKA----ARGDVIVVMDADLSHPPEYIPELLEAQ--LEGGADLVIGSRYV 117 (224)
T ss_pred ChHHHHHHHHHH----cCCCEEEEEECCCCCCHHHHHHHHHHH--hcCCCCEEEEeeee
Confidence 234433344443 356899999999999999997766653 34455554443333
No 32
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=98.26 E-value=1.1e-05 Score=76.12 Aligned_cols=111 Identities=20% Similarity=0.272 Sum_probs=74.2
Q ss_pred EEEEecCCh-h-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHH-HHHHhh----hhcceEeecCCCCCccCCccccccc
Q psy7047 102 IVVIACNRV-T-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATT-NVIKSY----QNQVHLIQQPNQQDIAVPPKEKKFK 174 (469)
Q Consensus 102 VlV~a~NRP-d-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~-~vv~~y----~~~i~~i~~~d~~~i~~~~~~k~~~ 174 (469)
|+|.+||.+ + +.++|++|+++.. ..++|+|..||+.+++. ++++.+ ..++.++...+ +.
T Consensus 2 iiip~~ne~~~~l~~~l~sl~~q~~--~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~-----------~~- 67 (236)
T cd06435 2 IHVPCYEEPPEMVKETLDSLAALDY--PNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEP-----------LP- 67 (236)
T ss_pred eeEeeCCCcHHHHHHHHHHHHhCCC--CCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCC-----------CC-
Confidence 789999996 8 9999999998753 23689999999887653 344333 33343333211 11
Q ss_pred cchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEec
Q psy7047 175 GYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSA 234 (469)
Q Consensus 175 ~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISA 234 (469)
|+ -+...+.|+...-. +++.++++++|+.++|+++..+... ++ ++.+.+|++
T Consensus 68 G~--~~~a~n~g~~~a~~--~~d~i~~lD~D~~~~~~~l~~l~~~---~~-~~~~~~v~~ 119 (236)
T cd06435 68 GA--KAGALNYALERTAP--DAEIIAVIDADYQVEPDWLKRLVPI---FD-DPRVGFVQA 119 (236)
T ss_pred CC--chHHHHHHHHhcCC--CCCEEEEEcCCCCcCHHHHHHHHHH---hc-CCCeeEEec
Confidence 11 12223445554332 4899999999999999999876654 44 578888876
No 33
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.22 E-value=1.3e-05 Score=72.01 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=80.2
Q ss_pred EEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcce---EeecCCCCCccCCccccccccch
Q psy7047 102 IVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVH---LIQQPNQQDIAVPPKEKKFKGYF 177 (469)
Q Consensus 102 VlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~---~i~~~d~~~i~~~~~~k~~~~y~ 177 (469)
|+|.+||+++ +.+||++|.++......+.|+|..||+.+++.++++.+..+.. ++... ++ .
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~-----------~n----~ 65 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLS-----------RN----F 65 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEcc-----------CC----C
Confidence 6899999999 9999999999854233568999999999899999988875431 12221 11 2
Q ss_pred hhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCCC
Q psy7047 178 KIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWNDN 238 (469)
Q Consensus 178 ~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNdn 238 (469)
+.+...+.|+.. ..-+.++++++|..++|++++-+-+.+ ...+..+.+......+
T Consensus 66 G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~~~l~~l~~~~--~~~~~~~v~g~~~~~~ 120 (185)
T cd04179 66 GKGAAVRAGFKA----ARGDIVVTMDADLQHPPEDIPKLLEKL--LEGGADVVIGSRFVRG 120 (185)
T ss_pred CccHHHHHHHHH----hcCCEEEEEeCCCCCCHHHHHHHHHHH--hccCCcEEEEEeecCC
Confidence 345444445544 345899999999999999987665542 3445555555544444
No 34
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=98.22 E-value=1.6e-05 Score=75.29 Aligned_cols=114 Identities=18% Similarity=0.272 Sum_probs=75.4
Q ss_pred cceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhh-------cceEeecCCCCCccCCccc
Q psy7047 99 AIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQN-------QVHLIQQPNQQDIAVPPKE 170 (469)
Q Consensus 99 ~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~-------~i~~i~~~d~~~i~~~~~~ 170 (469)
.+-|+|.+||..+ +.++|+||+++........|+|..| +.+++.++++++.. ++.++.+.+
T Consensus 2 ~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~---------- 70 (232)
T cd06437 2 MVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRAD---------- 70 (232)
T ss_pred ceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCC----------
Confidence 4779999999999 9999999998754344456777665 66667777665532 222222211
Q ss_pred cccccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecC
Q psy7047 171 KKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAW 235 (469)
Q Consensus 171 k~~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAw 235 (469)
+ .|+ -+. |++..+...+++.+++++.|+.+.||+++-+.. .+ .|+.+.+|++.
T Consensus 71 -~-~G~--k~~----a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~---~~-~~~~v~~v~~~ 123 (232)
T cd06437 71 -R-TGY--KAG----ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPP---YF-ADPKLGFVQTR 123 (232)
T ss_pred -C-CCC--chH----HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhh---hh-cCCCeEEEecc
Confidence 1 111 122 333333334799999999999999999876443 33 47889999883
No 35
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.21 E-value=1.8e-05 Score=77.74 Aligned_cols=114 Identities=11% Similarity=0.144 Sum_probs=79.4
Q ss_pred cceEEEEecCChh-HHHHHHHHHhcC-CCCCCCcEEEEeCCCChhHHHHHHhhhh--cceEeecCCCCCccCCccccccc
Q psy7047 99 AIAIVVIACNRVT-VSRCLDLLIKYR-PSVEKFPIIVSQDCNHEATTNVIKSYQN--QVHLIQQPNQQDIAVPPKEKKFK 174 (469)
Q Consensus 99 ~iPVlV~a~NRPd-l~RtLesLlk~r-p~~~~~~LiVsqDG~~~e~~~vv~~y~~--~i~~i~~~d~~~i~~~~~~k~~~ 174 (469)
.+.|++.+||.++ +.+||+||+++. .....++|+|..||+.+++.++++.+.. ++.++.+++
T Consensus 2 ~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~~i~~i~~~~-------------- 67 (248)
T PRK10063 2 LLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIFNLRFVSEPD-------------- 67 (248)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccCCEEEEECCC--------------
Confidence 5789999999999 999999998642 1223568999999999999999999863 244444322
Q ss_pred cchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecC
Q psy7047 175 GYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAW 235 (469)
Q Consensus 175 ~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAw 235 (469)
.+++. |++..+.....+.+++|+.|....|+.++++.++ .+..+...+++++
T Consensus 68 --~G~~~----A~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~~~~~---~~~~~~~~v~g~~ 119 (248)
T PRK10063 68 --NGIYD----AMNKGIAMAQGRFALFLNSGDIFHQDAANFVRQL---KMQKDNAMIIGDA 119 (248)
T ss_pred --CCHHH----HHHHHHHHcCCCEEEEEeCCcccCcCHHHHHHHH---HhCCCCeEEEeee
Confidence 13343 3443334346899999997777789988776665 2344455555554
No 36
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.15 E-value=2.8e-05 Score=79.51 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=77.2
Q ss_pred CCcceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhh---cceEeecCCCCCccCCccccc
Q psy7047 97 KDAIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQN---QVHLIQQPNQQDIAVPPKEKK 172 (469)
Q Consensus 97 ~~~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~---~i~~i~~~d~~~i~~~~~~k~ 172 (469)
.+.+-|+|.+||+++ +.+||+||+++.. ..++|+|..||+.+++.+++++|.. ++.++.+++
T Consensus 5 ~p~vSVIIP~yN~~~~L~~~l~Sl~~Qt~--~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi~~~n------------ 70 (328)
T PRK10073 5 TPKLSIIIPLYNAGKDFRAFMESLIAQTW--TALEIIIVNDGSTDNSVEIAKHYAENYPHVRLLHQAN------------ 70 (328)
T ss_pred CCeEEEEEeccCCHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEECCC------------
Confidence 356999999999999 9999999999854 3468999999999999999988864 344443321
Q ss_pred cccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhh
Q psy7047 173 FKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTY 220 (469)
Q Consensus 173 ~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L 220 (469)
.+++...+.||.. ...+.++++++|..+.|++++-+.+.+
T Consensus 71 ----~G~~~arN~gl~~----a~g~yi~flD~DD~~~p~~l~~l~~~~ 110 (328)
T PRK10073 71 ----AGVSVARNTGLAV----ATGKYVAFPDADDVVYPTMYETLMTMA 110 (328)
T ss_pred ----CChHHHHHHHHHh----CCCCEEEEECCCCccChhHHHHHHHHH
Confidence 1344433445543 467999999999999999987665543
No 37
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=98.14 E-value=2.9e-05 Score=82.22 Aligned_cols=115 Identities=14% Similarity=0.183 Sum_probs=84.6
Q ss_pred CCcceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc---ceEeecCCCCCccCCccccc
Q psy7047 97 KDAIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ---VHLIQQPNQQDIAVPPKEKK 172 (469)
Q Consensus 97 ~~~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~---i~~i~~~d~~~i~~~~~~k~ 172 (469)
.+.+.|+|.+||.+. +.+||++++++... .++|+|..||+.+++.++++++..+ +.++.... |
T Consensus 74 ~p~vsViIP~yNE~~~i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~-----------n 140 (444)
T PRK14583 74 HPLVSILVPCFNEGLNARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLAH-----------N 140 (444)
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeCC-----------C
Confidence 457999999999999 99999999987533 4789999999999888888776532 33222111 1
Q ss_pred cccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecC
Q psy7047 173 FKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAW 235 (469)
Q Consensus 173 ~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAw 235 (469)
.+-+...+.|+ ..-+++.+++++.|..+.||++..+.+. +.+|+++.+|+|-
T Consensus 141 ----~Gka~AlN~gl----~~a~~d~iv~lDAD~~~~~d~L~~lv~~---~~~~~~~g~v~g~ 192 (444)
T PRK14583 141 ----QGKAIALRMGA----AAARSEYLVCIDGDALLDKNAVPYLVAP---LIANPRTGAVTGN 192 (444)
T ss_pred ----CCHHHHHHHHH----HhCCCCEEEEECCCCCcCHHHHHHHHHH---HHhCCCeEEEEcc
Confidence 12233233344 3247999999999999999999877654 4568999999873
No 38
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=98.09 E-value=2.4e-05 Score=89.47 Aligned_cols=176 Identities=16% Similarity=0.158 Sum_probs=118.6
Q ss_pred CcceEEEEecCCh-h-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcceEeecCCCCCccCCcccccccc
Q psy7047 98 DAIAIVVIACNRV-T-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKG 175 (469)
Q Consensus 98 ~~iPVlV~a~NRP-d-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~ 175 (469)
+.+-|+|-+||-+ + +++++.++++.....++++|+|..||+++++.+.+++++ +.++..++..
T Consensus 260 P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~~--v~yI~R~~n~------------- 324 (852)
T PRK11498 260 PTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEVG--VKYIARPTHE------------- 324 (852)
T ss_pred CcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHCC--cEEEEeCCCC-------------
Confidence 5799999999999 5 789999999876556678999999999999999998875 4555543310
Q ss_pred chhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecC----CCCCCCc-c---cCC-
Q psy7047 176 YFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAW----NDNGKPT-L---IDT- 246 (469)
Q Consensus 176 y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAw----NdnG~~~-~---vd~- 246 (469)
.+-+. +|+......+.+.+++++-|.++.|||+. .+...+..|++|.+|.+- |..+... . ...
T Consensus 325 -~gKAG----nLN~aL~~a~GEyIavlDAD~ip~pdfL~---~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~~~ 396 (852)
T PRK11498 325 -HAKAG----NINNALKYAKGEFVAIFDCDHVPTRSFLQ---MTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTP 396 (852)
T ss_pred -cchHH----HHHHHHHhCCCCEEEEECCCCCCChHHHH---HHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhhcc
Confidence 01122 33443443478999999999999999984 556667789999999863 2211100 0 000
Q ss_pred CCCcce----------eecCCCCccccccchhhHHHhhcCCCC----CCccchhccccccCCCceee
Q psy7047 247 SSSDLL----------YRTDFFPGLGWMLTKDLWDEISVKWPR----SYWDDWIRQPEQRKDRACIR 299 (469)
Q Consensus 247 ~d~~~l----------yRsdffPglGWmtwrr~W~El~pkWP~----~~WD~w~r~~~~r~gr~cI~ 299 (469)
.....+ +...++.|=+-+..|++++|+.. |+. .++|-++|. .++|-.+.+
T Consensus 397 ~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGG-fd~~titED~dlslRL--~~~Gyrv~y 460 (852)
T PRK11498 397 NEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGG-IAVETVTEDAHTSLRL--HRRGYTSAY 460 (852)
T ss_pred cchhHHHHHHHhHHHhhcccccccceeeeEHHHHHHhcC-CCCCccCccHHHHHHH--HHcCCEEEE
Confidence 011112 23345666677888999998743 443 366666766 567776664
No 39
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=98.09 E-value=4.7e-05 Score=78.73 Aligned_cols=117 Identities=12% Similarity=0.249 Sum_probs=81.9
Q ss_pred CCcceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc-----ceEeecCCCCCccCCccc
Q psy7047 97 KDAIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ-----VHLIQQPNQQDIAVPPKE 170 (469)
Q Consensus 97 ~~~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~-----i~~i~~~d~~~i~~~~~~ 170 (469)
.+.+-|++-+||..+ +.+||+||+++... .++|+|..|++.+.+.++++++..+ +..+..+..
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~Sl~~q~Yp--~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~--------- 108 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLASFCRQDYP--GFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARR--------- 108 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHHHHHhcCCC--CeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCC---------
Confidence 456899999999999 99999999998643 3789998898888777887776532 333322110
Q ss_pred cccccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecC
Q psy7047 171 KKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAW 235 (469)
Q Consensus 171 k~~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAw 235 (469)
.+.-.+.+ ++.+....-+++.++++++|+.++||+++-+.+. ++ |+.+.+|++.
T Consensus 109 --~G~~~K~~-----~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~---~~-~~~v~~V~~~ 162 (373)
T TIGR03472 109 --HGPNRKVS-----NLINMLPHARHDILVIADSDISVGPDYLRQVVAP---LA-DPDVGLVTCL 162 (373)
T ss_pred --CCCChHHH-----HHHHHHHhccCCEEEEECCCCCcChhHHHHHHHH---hc-CCCcceEecc
Confidence 00001222 3444444447999999999999999999755443 43 7889888874
No 40
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.04 E-value=4.4e-05 Score=69.22 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=74.6
Q ss_pred EEEEecCChh-HHHHHHHHHhcCC-CCCCCcEEEEeCCCChhHHHHHHhhhhc---ceEeecCCCCCccCCccccccccc
Q psy7047 102 IVVIACNRVT-VSRCLDLLIKYRP-SVEKFPIIVSQDCNHEATTNVIKSYQNQ---VHLIQQPNQQDIAVPPKEKKFKGY 176 (469)
Q Consensus 102 VlV~a~NRPd-l~RtLesLlk~rp-~~~~~~LiVsqDG~~~e~~~vv~~y~~~---i~~i~~~d~~~i~~~~~~k~~~~y 176 (469)
|++.+||+++ +.++|++|.++.. ....++|+|..||+.+++.++++.+..+ +.++.+.. +
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~-----------n---- 65 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSR-----------N---- 65 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecC-----------C----
Confidence 6899999999 9999999987532 1235689999999999998888888643 33333311 1
Q ss_pred hhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCe
Q psy7047 177 FKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTL 229 (469)
Q Consensus 177 ~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI 229 (469)
.+.++..+.|+ .....+.++++++|..++|+++.-+-+. ++.+..+
T Consensus 66 ~G~~~a~n~g~----~~a~~d~i~~~D~D~~~~~~~l~~l~~~---~~~~~~~ 111 (181)
T cd04187 66 FGQQAALLAGL----DHARGDAVITMDADLQDPPELIPEMLAK---WEEGYDV 111 (181)
T ss_pred CCcHHHHHHHH----HhcCCCEEEEEeCCCCCCHHHHHHHHHH---HhCCCcE
Confidence 23444333344 3346799999999999999988766665 4555554
No 41
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=98.04 E-value=5.7e-05 Score=70.18 Aligned_cols=114 Identities=20% Similarity=0.323 Sum_probs=77.0
Q ss_pred EEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHH-hhh-hcceEeecCCCCCccCCccccccccchh
Q psy7047 102 IVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIK-SYQ-NQVHLIQQPNQQDIAVPPKEKKFKGYFK 178 (469)
Q Consensus 102 VlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~-~y~-~~i~~i~~~d~~~i~~~~~~k~~~~y~~ 178 (469)
|+|.+||..+ +.+||++|+++. ..+.|+|..||+.+++.++++ ... .++..+.++. . +++ .+
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~---~~~eIivvdd~S~D~t~~~~~~~~~~~~v~~i~~~~------~--~~~----~G 65 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNK---PNFLVLVIDDASDDDTAGIVRLAITDSRVHLLRRHL------P--NAR----TG 65 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCC---CCeEEEEEECCCCcCHHHHHhheecCCcEEEEeccC------C--cCC----CC
Confidence 6889999999 999999999985 346899999999999988887 221 2344444311 0 001 11
Q ss_pred hhhhHHHHHHHhhhh-------ccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEec
Q psy7047 179 IARHYGWALNQMFYE-------FNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSA 234 (469)
Q Consensus 179 Ia~Hyk~aLs~vF~~-------~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISA 234 (469)
-+.-.++|+..+... ...+.+++++.|..+.|++|+.+.+.+ .|+.+.+|.+
T Consensus 66 k~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~----~~~~v~~v~~ 124 (191)
T cd06436 66 KGDALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF----SDPRVAGTQS 124 (191)
T ss_pred HHHHHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh----cCCceEEEee
Confidence 233334455544321 123689999999999999998766543 3788877654
No 42
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=97.99 E-value=6.4e-05 Score=73.70 Aligned_cols=175 Identities=15% Similarity=0.151 Sum_probs=101.0
Q ss_pred EecCC-hh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChh--HHHHHHhhhhcceEeecCCCCCccCCccccccccchhhh
Q psy7047 105 IACNR-VT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEA--TTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFKIA 180 (469)
Q Consensus 105 ~a~NR-Pd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e--~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~y~~Ia 180 (469)
++||| ++ |+++|+||+++. ..|+|..||+..+ +.+..+.+ .++.++..+ +| .++|
T Consensus 1 Vtyn~~~~~l~~~l~sl~~q~-----~~iiVVDN~S~~~~~~~~~~~~~-~~i~~i~~~-----------~N----~G~a 59 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPKQV-----DRIIAVDNSPHSDQPLKNARLRG-QKIALIHLG-----------DN----QGIA 59 (281)
T ss_pred CccCccHHHHHHHHHHHHhcC-----CEEEEEECcCCCcHhHHHHhccC-CCeEEEECC-----------CC----cchH
Confidence 48999 57 999999999872 3699999997532 33333333 345555432 22 2456
Q ss_pred hhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCC-CeeEEecCCCCCC-Cccc---C----------
Q psy7047 181 RHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDP-TLWCVSAWNDNGK-PTLI---D---------- 245 (469)
Q Consensus 181 ~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~-sI~~ISAwNdnG~-~~~v---d---------- 245 (469)
.-++.|+..+.+ .+++.+++++||..+.|++++-+. +.+++++ .+.++++--.++. .... .
T Consensus 60 ~a~N~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (281)
T TIGR01556 60 GAQNQGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQW---KLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQIS 135 (281)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHH---HHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeec
Confidence 666677777654 368999999999999999886544 4455454 6766665321110 0000 0
Q ss_pred CCCCcceeecCCCCccccccchhhHHHhhcCCCC-----CCccchhccccccCCC-ceeeeCcccccc
Q psy7047 246 TSSSDLLYRTDFFPGLGWMLTKDLWDEISVKWPR-----SYWDDWIRQPEQRKDR-ACIRPEISRTRT 307 (469)
Q Consensus 246 ~~d~~~lyRsdffPglGWmtwrr~W~El~pkWP~-----~~WD~w~r~~~~r~gr-~cI~PeisRt~~ 307 (469)
.........+++..+-|.+..|++++++..--+. ..+|-++|. ...|- .+..|++- +.|
T Consensus 136 ~~~~~~~~~~~~~~~sg~li~~~~~~~iG~fde~~fi~~~D~e~~~R~--~~~G~~i~~~~~~~-~~H 200 (281)
T TIGR01556 136 LDGLTTPQKTSFLISSGCLITREVYQRLGMMDEELFIDHVDTEWSLRA--QNYGIPLYIDPDIV-LEH 200 (281)
T ss_pred ccccCCceeccEEEcCcceeeHHHHHHhCCccHhhcccchHHHHHHHH--HHCCCEEEEeCCEE-EEE
Confidence 0001112233444455789999999976431111 122333443 45564 55577654 443
No 43
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=97.95 E-value=5.7e-05 Score=75.84 Aligned_cols=120 Identities=18% Similarity=0.267 Sum_probs=86.9
Q ss_pred CCcceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhh-hhcceEeecCCCCCccCCccccccc
Q psy7047 97 KDAIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSY-QNQVHLIQQPNQQDIAVPPKEKKFK 174 (469)
Q Consensus 97 ~~~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y-~~~i~~i~~~d~~~i~~~~~~k~~~ 174 (469)
.+.+.|++++|||++ +..||++|.++..... .+++.++|+..++.+.++.. ...+.+++..+ |++
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~--~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~-----------NlG 68 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYPDD--VIVVVDNGSTDGSLEALKARFFPNVRLIENGE-----------NLG 68 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCCCc--EEEEccCCCCCCCHHHHHhhcCCcEEEEEcCC-----------Ccc
Confidence 457899999999999 9999999999965432 34456668888887777775 34566666533 332
Q ss_pred cchhhhhhHHHHHHHhhhhcc-ccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCCC
Q psy7047 175 GYFKIARHYGWALNQMFYEFN-FSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWNDN 238 (469)
Q Consensus 175 ~y~~Ia~Hyk~aLs~vF~~~~-~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNdn 238 (469)
.|...+.|+...+. + ++.+++|-+|.++.||++ ++++...+.++.++++.+.-.+
T Consensus 69 ----~agg~n~g~~~a~~--~~~~~~l~LN~D~~~~~~~l---~~ll~~~~~~~~~~~~~~~i~~ 124 (305)
T COG1216 69 ----FAGGFNRGIKYALA--KGDDYVLLLNPDTVVEPDLL---EELLKAAEEDPAAGVVGPLIRN 124 (305)
T ss_pred ----chhhhhHHHHHHhc--CCCcEEEEEcCCeeeChhHH---HHHHHHHHhCCCCeEeeeeEec
Confidence 34333345555554 3 338999999999999998 7888888899988888776554
No 44
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=97.93 E-value=0.00011 Score=76.46 Aligned_cols=109 Identities=16% Similarity=0.268 Sum_probs=75.1
Q ss_pred CCCcceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhh------cceEeecCCCCCccCCc
Q psy7047 96 SKDAIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQN------QVHLIQQPNQQDIAVPP 168 (469)
Q Consensus 96 ~~~~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~------~i~~i~~~d~~~i~~~~ 168 (469)
..+.+-|+|.+||..+ +.+||++|+++.... .++|+|..||+.+++.++++++.. ++.+++..+.
T Consensus 38 ~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~------- 109 (384)
T TIGR03469 38 AWPAVVAVVPARNEADVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPL------- 109 (384)
T ss_pred CCCCEEEEEecCCcHhHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCC-------
Confidence 3456899999999999 999999999875322 468999999999999999888753 2333322110
Q ss_pred cccccccchhhhhhHHHHHHHhhhhcc-----ccEEEEEccCcccCchHHHHHHhhh
Q psy7047 169 KEKKFKGYFKIARHYGWALNQMFYEFN-----FSTAIVIEDDLDIAPDFFEYFLGTY 220 (469)
Q Consensus 169 ~~k~~~~y~~Ia~Hyk~aLs~vF~~~~-----~~~vIILEDDLvvSPDFf~Yf~~~L 220 (469)
..+. .+-+ +|+++...... .+.++++++|+.+.||+++-+-+.+
T Consensus 110 -~~g~---~Gk~----~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~ 158 (384)
T TIGR03469 110 -PPGW---SGKL----WAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARA 158 (384)
T ss_pred -CCCC---cchH----HHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 0011 1112 24444444333 8999999999999999986555444
No 45
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=97.93 E-value=0.00012 Score=70.34 Aligned_cols=105 Identities=21% Similarity=0.306 Sum_probs=74.1
Q ss_pred CCCcceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc-----ceEeecCCCCCccCCcc
Q psy7047 96 SKDAIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ-----VHLIQQPNQQDIAVPPK 169 (469)
Q Consensus 96 ~~~~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~-----i~~i~~~d~~~i~~~~~ 169 (469)
+.+.+-|+|.+||..+ +..++++|.+.......++|+|..||+.+++.++++++..+ +..+.+
T Consensus 7 ~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~----------- 75 (243)
T PLN02726 7 GAMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPR----------- 75 (243)
T ss_pred CCceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEec-----------
Confidence 3457999999999999 99999999875333336789999999999999988886532 222222
Q ss_pred ccccccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhh
Q psy7047 170 EKKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGT 219 (469)
Q Consensus 170 ~k~~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~ 219 (469)
.+|. +.+. |++..+.....+.+++++.|+.+.|++++-+-+.
T Consensus 76 ~~n~----G~~~----a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~ 117 (243)
T PLN02726 76 PGKL----GLGT----AYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKK 117 (243)
T ss_pred CCCC----CHHH----HHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHH
Confidence 1111 2233 4444444346899999999999999998755543
No 46
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=97.87 E-value=8.6e-05 Score=69.63 Aligned_cols=181 Identities=12% Similarity=0.141 Sum_probs=102.0
Q ss_pred EEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc-----ceEeecCCCCCccCCcccccccc
Q psy7047 102 IVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ-----VHLIQQPNQQDIAVPPKEKKFKG 175 (469)
Q Consensus 102 VlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~-----i~~i~~~d~~~i~~~~~~k~~~~ 175 (469)
|+|.+||+.+ |.+||+||+++... ..++|+|..||+.+++.+++++|..+ +.++.+... ..++
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~--- 69 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFE-GTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHN-------SPSP--- 69 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEeccc-------CCCC---
Confidence 6899999999 99999999998643 24689999999999999998887543 222211110 0001
Q ss_pred chhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCC---CCCCcc---cC-CCC
Q psy7047 176 YFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWND---NGKPTL---ID-TSS 248 (469)
Q Consensus 176 y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNd---nG~~~~---vd-~~d 248 (469)
.+++. |.+..+..-+.+.+++|++|..+.|+.+.-+- ..+.+++.....++... ++.... .. ...
T Consensus 70 -~G~~~----a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 141 (219)
T cd06913 70 -KGVGY----AKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQY---EAALQHPNSIIGCQVRRIPEDSTERYTRWINTLTR 141 (219)
T ss_pred -ccHHH----HHHHHHHhcCCCEEEEECCCccCChhHHHHHH---HHHHhCCCcEEEEEEEecCcccchhhHHHHHhcCH
Confidence 12332 33333443468999999999999999876433 33333443333333322 111110 00 000
Q ss_pred Cccee--ecC---CCCccccccchhhHHHhhc---CCC--CCCccchhccccccCCC-ceeeeCcc
Q psy7047 249 SDLLY--RTD---FFPGLGWMLTKDLWDEISV---KWP--RSYWDDWIRQPEQRKDR-ACIRPEIS 303 (469)
Q Consensus 249 ~~~ly--Rsd---ffPglGWmtwrr~W~El~p---kWP--~~~WD~w~r~~~~r~gr-~cI~Peis 303 (469)
..... .+. ..+..+||..|++|+++.. ... ...||.|+|- .++|. -.-.|+.-
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~g~f~~~~~~~~eD~~l~~r~--~~~g~~i~~~~~~~ 205 (219)
T cd06913 142 EQLLTQVYTSHGPTVIMPTWFCSREWFSHVGPFDEGGKGVPEDLLFFYEH--LRKGGGVYRVDRCL 205 (219)
T ss_pred HHHHHHHHhhcCCccccccceeehhHHhhcCCccchhccchhHHHHHHHH--HHcCCceEEEccee
Confidence 00000 011 1122358889999987542 221 1468888886 33443 34455543
No 47
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=97.77 E-value=0.00024 Score=66.21 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=71.3
Q ss_pred EEEEecCChh-HHHHHHHHHhcCC--CCCCCcEEEEeCCCChhHHHHHHhhhhcc----eEeecCCCCCccCCccccccc
Q psy7047 102 IVVIACNRVT-VSRCLDLLIKYRP--SVEKFPIIVSQDCNHEATTNVIKSYQNQV----HLIQQPNQQDIAVPPKEKKFK 174 (469)
Q Consensus 102 VlV~a~NRPd-l~RtLesLlk~rp--~~~~~~LiVsqDG~~~e~~~vv~~y~~~i----~~i~~~d~~~i~~~~~~k~~~ 174 (469)
|+|.+||..+ +.++|++|+++.. ....++|+|..||+.+.+.++++.+..+. .++.+.. |
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~-----------n-- 67 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPK-----------N-- 67 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEccc-----------C--
Confidence 6889999999 9999999998631 12357899999999999999988885331 2333211 1
Q ss_pred cchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhh
Q psy7047 175 GYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGT 219 (469)
Q Consensus 175 ~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~ 219 (469)
.+.+. |++..+.....+.+++++.|....|+++.-+.+.
T Consensus 68 --~G~~~----a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~ 106 (211)
T cd04188 68 --RGKGG----AVRAGMLAARGDYILFADADLATPFEELEKLEEA 106 (211)
T ss_pred --CCcHH----HHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 12333 4444444446799999999999999999766655
No 48
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=97.73 E-value=0.00022 Score=68.25 Aligned_cols=95 Identities=20% Similarity=0.289 Sum_probs=71.9
Q ss_pred ceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcceEeecCCCCCccCCccccccccchh
Q psy7047 100 IAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFK 178 (469)
Q Consensus 100 iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~y~~ 178 (469)
+-|+|.+||..+ +.+||+||..+. .+|+|..||+.+.+.++++.++.++ +.+ .+ .+
T Consensus 2 isvii~~~Ne~~~l~~~l~sl~~~~-----~eiivvD~gStD~t~~i~~~~~~~v--~~~-~~---------------~g 58 (229)
T cd02511 2 LSVVIITKNEERNIERCLESVKWAV-----DEIIVVDSGSTDRTVEIAKEYGAKV--YQR-WW---------------DG 58 (229)
T ss_pred EEEEEEeCCcHHHHHHHHHHHhccc-----CEEEEEeCCCCccHHHHHHHcCCEE--EEC-CC---------------CC
Confidence 679999999999 999999998661 2699999999999999999886443 333 11 12
Q ss_pred hhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhh
Q psy7047 179 IARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYP 221 (469)
Q Consensus 179 Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ 221 (469)
.+...++|+.. ...+.+++|+.|..++|++++-+.+.+.
T Consensus 59 ~~~~~n~~~~~----a~~d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 59 FGAQRNFALEL----ATNDWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred hHHHHHHHHHh----CCCCEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 34434455544 4678999999999999999986666543
No 49
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.71 E-value=0.00029 Score=59.53 Aligned_cols=99 Identities=18% Similarity=0.197 Sum_probs=68.5
Q ss_pred CCcceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcc-eEeecCCCCCccCCccccccc
Q psy7047 97 KDAIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQV-HLIQQPNQQDIAVPPKEKKFK 174 (469)
Q Consensus 97 ~~~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i-~~i~~~d~~~i~~~~~~k~~~ 174 (469)
.+.+-|++.+||++. +.++|+|++++.... +.|+|..||+.+++.++++.+.... ..+.. ....+
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t~~~~~~~~~~~~~~~~~---------~~~~~-- 68 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYKD--FEIIVVDDGSTDGTTEIAIEYGAKDVRVIRL---------INERN-- 68 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhcc--eEEEEEeCCCCCChHHHHHHHhhhcceEEEe---------ecccC--
Confidence 356889999999999 999999999986543 5699999999999999999987542 11111 00111
Q ss_pred cchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHH
Q psy7047 175 GYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEY 215 (469)
Q Consensus 175 ~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Y 215 (469)
.+++. |++..+.....+.+..++.|.. .|+-+..
T Consensus 69 --~g~~~----~~~~~~~~~~~~~~~~~d~d~~-~~~~~~~ 102 (291)
T COG0463 69 --GGLGA----ARNAGLEYARGDYIVFLDADDQ-HPPELIP 102 (291)
T ss_pred --CChHH----HHHhhHHhccCCEEEEEccCCC-CCHHHHH
Confidence 12333 3333333224488999999999 7777766
No 50
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=97.70 E-value=0.00021 Score=80.50 Aligned_cols=179 Identities=16% Similarity=0.245 Sum_probs=107.8
Q ss_pred CcceEEEEecCChh--HHHHHHHHHhcCCCCCCCcEEEEeCCCChhH--------------HHHHHhhhh--cceEeecC
Q psy7047 98 DAIAIVVIACNRVT--VSRCLDLLIKYRPSVEKFPIIVSQDCNHEAT--------------TNVIKSYQN--QVHLIQQP 159 (469)
Q Consensus 98 ~~iPVlV~a~NRPd--l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~--------------~~vv~~y~~--~i~~i~~~ 159 (469)
+.+-|+|.+||.+. +++||+++++.....+++.|+|..||+.+++ .+.++++.. .+.++..+
T Consensus 131 P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~r~ 210 (713)
T TIGR03030 131 PTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITRP 210 (713)
T ss_pred CeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEECC
Confidence 47889999999984 6789999998765556788999999964432 122333221 24444433
Q ss_pred CCCCccCCccccccccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecC----
Q psy7047 160 NQQDIAVPPKEKKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAW---- 235 (469)
Q Consensus 160 d~~~i~~~~~~k~~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAw---- 235 (469)
+. .. .+ +. +|+......+.+.+++++.|.++.|||+ .++...+..|+.|.+|.+=
T Consensus 211 ~n-----------~~--~K-Ag----nLN~al~~a~gd~Il~lDAD~v~~pd~L---~~~v~~f~~dp~v~~Vqtp~~f~ 269 (713)
T TIGR03030 211 RN-----------VH--AK-AG----NINNALKHTDGELILIFDADHVPTRDFL---QRTVGWFVEDPKLFLVQTPHFFV 269 (713)
T ss_pred CC-----------CC--CC-hH----HHHHHHHhcCCCEEEEECCCCCcChhHH---HHHHHHHHhCCCEEEEeCCeecc
Confidence 21 00 01 22 3333334347899999999999999998 5666677789999998652
Q ss_pred CCCCCCcccC-----CCCCcce----------eecCCCCccccccchhhHHHhhcCCC----CCCccchhccccccCCCc
Q psy7047 236 NDNGKPTLID-----TSSSDLL----------YRTDFFPGLGWMLTKDLWDEISVKWP----RSYWDDWIRQPEQRKDRA 296 (469)
Q Consensus 236 NdnG~~~~vd-----~~d~~~l----------yRsdffPglGWmtwrr~W~El~pkWP----~~~WD~w~r~~~~r~gr~ 296 (469)
|.+....... ......+ +...++.|-+-+..|++.+++.. |+ ..+.+-++|- .++|-.
T Consensus 270 ~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGG-f~~~~vtED~~l~~rL--~~~G~~ 346 (713)
T TIGR03030 270 SPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGG-IAGETVTEDAETALKL--HRRGWN 346 (713)
T ss_pred CCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCC-CCCCCcCcHHHHHHHH--HHcCCe
Confidence 2111110000 0000011 12345667788899999998753 33 2345555554 567766
Q ss_pred eeee
Q psy7047 297 CIRP 300 (469)
Q Consensus 297 cI~P 300 (469)
+++=
T Consensus 347 ~~y~ 350 (713)
T TIGR03030 347 SAYL 350 (713)
T ss_pred EEEe
Confidence 5543
No 51
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=97.67 E-value=0.00017 Score=69.93 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=70.6
Q ss_pred EEEEecCCh-h-HHHHHHHHHhcCCC--------CCCCcEEEEeCCCChhHHHHHHhhhhcceEeecCCCCCccCCcccc
Q psy7047 102 IVVIACNRV-T-VSRCLDLLIKYRPS--------VEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEK 171 (469)
Q Consensus 102 VlV~a~NRP-d-l~RtLesLlk~rp~--------~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k 171 (469)
|+|-+||-+ + +.++|+||+++... ..+..|+|..||+.+ .+ .+
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d----------------~~---------~g-- 53 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK----------------KN---------RG-- 53 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc----------------cc---------Cc--
Confidence 689999995 7 99999999998754 457899999999876 00 00
Q ss_pred ccccchhhhhhHHH---HHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCC
Q psy7047 172 KFKGYFKIARHYGW---ALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWN 236 (469)
Q Consensus 172 ~~~~y~~Ia~Hyk~---aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwN 236 (469)
+... ..| ++......-+.+.+++++.|..+.||++..+.+. +..||.+.+|+|.-
T Consensus 54 ------k~~~-~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~---~~~~p~vg~v~g~~ 111 (244)
T cd04190 54 ------KRDS-QLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKA---MDKDPEIGGVCGEI 111 (244)
T ss_pred ------chHH-HHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHH---HHhCCCEEEEEeee
Confidence 1111 122 3333222237999999999999999999776544 45689999998753
No 52
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=97.58 E-value=0.00052 Score=69.87 Aligned_cols=122 Identities=18% Similarity=0.200 Sum_probs=81.5
Q ss_pred CCcceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcceEeecCCCCCccCCcccccccc
Q psy7047 97 KDAIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKG 175 (469)
Q Consensus 97 ~~~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~ 175 (469)
.+.+-|+|.+||..+ +.++|++|.++........|+|..||+.+.+.+++++++.++ +.+... +. ....|
T Consensus 30 ~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v--~~~~~~--~~--~~~~n--- 100 (306)
T PRK13915 30 GRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARV--VSREEI--LP--ELPPR--- 100 (306)
T ss_pred CCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchh--hcchhh--hh--ccccC---
Confidence 457899999999999 999999999864212235899999999999999999886442 111100 00 00111
Q ss_pred chhhhhhHHHHHHHhhhhccccEEEEEccCcc-cCchHHHHHHhhhhhhcCCCCeeEEecC
Q psy7047 176 YFKIARHYGWALNQMFYEFNFSTAIVIEDDLD-IAPDFFEYFLGTYPLLISDPTLWCVSAW 235 (469)
Q Consensus 176 y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLv-vSPDFf~Yf~~~L~ly~~D~sI~~ISAw 235 (469)
.+.+. |+..-+.....+.+++++.|+. ..|+++ .+++..+..++.+..+.|+
T Consensus 101 -~Gkg~----A~~~g~~~a~gd~vv~lDaD~~~~~p~~l---~~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 101 -PGKGE----ALWRSLAATTGDIVVFVDADLINFDPMFV---PGLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred -CCHHH----HHHHHHHhcCCCEEEEEeCccccCCHHHH---HHHHHHHHhCCCceEEEEE
Confidence 12222 3333344346899999999996 899986 4555555567777666664
No 53
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=97.26 E-value=0.0028 Score=65.18 Aligned_cols=122 Identities=19% Similarity=0.148 Sum_probs=82.9
Q ss_pred CCCCcceEEEEecCChh-HHHHHHHHHhcCC------CCCCCcEEEEeCCCChhHHHHHHhhhhc-------ceEeecCC
Q psy7047 95 YSKDAIAIVVIACNRVT-VSRCLDLLIKYRP------SVEKFPIIVSQDCNHEATTNVIKSYQNQ-------VHLIQQPN 160 (469)
Q Consensus 95 ~~~~~iPVlV~a~NRPd-l~RtLesLlk~rp------~~~~~~LiVsqDG~~~e~~~vv~~y~~~-------i~~i~~~d 160 (469)
.+.+.+-|+|.+||..+ +.++|+++.++-. ....++|+|-.||+.+.+.++++++..+ +.++.++.
T Consensus 67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 34567999999999999 9999999987421 1224689999999999999999888633 33343321
Q ss_pred CCCccCCccccccccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCC
Q psy7047 161 QQDIAVPPKEKKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWN 236 (469)
Q Consensus 161 ~~~i~~~~~~k~~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwN 236 (469)
|. +.+.-++.|+.. -..+.+++++.|....|+.++-+.+.+.-++ ++.+..|.|.-
T Consensus 147 -----------N~----G~~~A~~~Gi~~----a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~-~~~~dvV~GsR 202 (333)
T PTZ00260 147 -----------NK----GKGGAVRIGMLA----SRGKYILMVDADGATDIDDFDKLEDIMLKIE-QNGLGIVFGSR 202 (333)
T ss_pred -----------CC----ChHHHHHHHHHH----ccCCEEEEEeCCCCCCHHHHHHHHHHHHHhh-ccCCceEEeec
Confidence 11 223223334432 3678999999999999999877766655433 33455555543
No 54
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=97.12 E-value=0.006 Score=68.92 Aligned_cols=120 Identities=11% Similarity=0.117 Sum_probs=78.5
Q ss_pred cCCCCCcceEEEEecCCh-----h-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHH--------HHHhhhh--cceEe
Q psy7047 93 FHYSKDAIAIVVIACNRV-----T-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTN--------VIKSYQN--QVHLI 156 (469)
Q Consensus 93 ~~~~~~~iPVlV~a~NRP-----d-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~--------vv~~y~~--~i~~i 156 (469)
..+..+.+.|++-+||=. + ++.+++||.+... ...+.++|-+||.++++.. ..++++. ++.+.
T Consensus 119 ~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~-~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr 197 (691)
T PRK05454 119 PPPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGH-GAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYR 197 (691)
T ss_pred CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCC-CCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 344456899999999988 4 7788888887633 3468899999999887532 2333421 33333
Q ss_pred ecCCCCCccCCccccccccchhhhhhHHHHHHHhhhh--ccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEec
Q psy7047 157 QQPNQQDIAVPPKEKKFKGYFKIARHYGWALNQMFYE--FNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSA 234 (469)
Q Consensus 157 ~~~d~~~i~~~~~~k~~~~y~~Ia~Hyk~aLs~vF~~--~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISA 234 (469)
+..++. ++| +- .|...+.. -+|+++||++-|-.++|||+. .+...+++||++..|.+
T Consensus 198 ~R~~n~-------~~K-------aG----Nl~~~~~~~~~~~eyivvLDADs~m~~d~L~---~lv~~m~~dP~vGlVQt 256 (691)
T PRK05454 198 RRRRNV-------GRK-------AG----NIADFCRRWGGAYDYMVVLDADSLMSGDTLV---RLVRLMEANPRAGLIQT 256 (691)
T ss_pred ECCcCC-------Ccc-------HH----HHHHHHHhcCCCcCEEEEEcCCCCCCHHHHH---HHHHHHhhCcCEEEEeC
Confidence 222210 111 11 22222322 168999999999999999985 45556678999999985
No 55
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=97.07 E-value=0.0083 Score=59.57 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=72.8
Q ss_pred ceEEEEecCChh--HHHHHHHHHh----cCCCCCCCcEEEEeCCCChhHHH--------HHHhhhh--cceEeecCCCCC
Q psy7047 100 IAIVVIACNRVT--VSRCLDLLIK----YRPSVEKFPIIVSQDCNHEATTN--------VIKSYQN--QVHLIQQPNQQD 163 (469)
Q Consensus 100 iPVlV~a~NRPd--l~RtLesLlk----~rp~~~~~~LiVsqDG~~~e~~~--------vv~~y~~--~i~~i~~~d~~~ 163 (469)
+.|++-+||=+. +..+|++..+ +.+ ...+.|+|.+||.+.+... .++.+.. ++.++..++
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~-~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~--- 76 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGL-ADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRE--- 76 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCC-cCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCC---
Confidence 468999999995 8999998876 322 2347899999998865321 2333432 223233221
Q ss_pred ccCCccccccccchhhhhhHHHHHHHhhhh--ccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEec
Q psy7047 164 IAVPPKEKKFKGYFKIARHYGWALNQMFYE--FNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSA 234 (469)
Q Consensus 164 i~~~~~~k~~~~y~~Ia~Hyk~aLs~vF~~--~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISA 234 (469)
+++. +.+ +|...... -+++.++|++-|..+.|||+.. +.+.+..||.|..|.+
T Consensus 77 ------~~g~----Kag-----~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~---~v~~~~~~~~vg~vq~ 131 (254)
T cd04191 77 ------NTGR----KAG-----NIADFCRRWGSRYDYMVVLDADSLMSGDTIVR---LVRRMEANPRAGIIQT 131 (254)
T ss_pred ------CCCc----cHH-----HHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHH---HHHHHHhCCCEEEEeC
Confidence 1111 111 33333332 2689999999999999999955 4555567999999974
No 56
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=96.99 E-value=0.0061 Score=62.44 Aligned_cols=103 Identities=11% Similarity=0.186 Sum_probs=72.1
Q ss_pred cceEEEEecCChh-HHHHHHHHHhcC-CCCCCCcEEEEeCCCChhHHHHHHhhhh----cceEeecCCCCCccCCccccc
Q psy7047 99 AIAIVVIACNRVT-VSRCLDLLIKYR-PSVEKFPIIVSQDCNHEATTNVIKSYQN----QVHLIQQPNQQDIAVPPKEKK 172 (469)
Q Consensus 99 ~iPVlV~a~NRPd-l~RtLesLlk~r-p~~~~~~LiVsqDG~~~e~~~vv~~y~~----~i~~i~~~d~~~i~~~~~~k~ 172 (469)
.+-|+|.+||..+ +.+++++|.+.- .....++|+|..||+.+.+.++++++.. ++..+.+ ++|
T Consensus 7 ~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~-----------~~n 75 (325)
T PRK10714 7 KVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILL-----------NRN 75 (325)
T ss_pred eEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEe-----------CCC
Confidence 5889999999999 999999987531 1123468999999999999888877642 2222221 112
Q ss_pred cccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhh
Q psy7047 173 FKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTY 220 (469)
Q Consensus 173 ~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L 220 (469)
+ +.+. |+..-+.....+.+++++.|+...|+.+.-|-+.+
T Consensus 76 ~----G~~~----A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~ 115 (325)
T PRK10714 76 Y----GQHS----AIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKA 115 (325)
T ss_pred C----CHHH----HHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 1 2233 44444443478999999999999999987777665
No 57
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=96.73 E-value=0.025 Score=56.41 Aligned_cols=116 Identities=20% Similarity=0.271 Sum_probs=72.9
Q ss_pred EEEEecCCh------h-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc--ce-EeecCCCCCccCCcccc
Q psy7047 102 IVVIACNRV------T-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ--VH-LIQQPNQQDIAVPPKEK 171 (469)
Q Consensus 102 VlV~a~NRP------d-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~--i~-~i~~~d~~~i~~~~~~k 171 (469)
|+|-+.+|- + ++.+|++|.+..+ ...+.|+|..||+..+..+.+++.... .. ++.+.+..
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~-~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~--------- 71 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQS-DPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNG--------- 71 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCC-CCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCC---------
Confidence 566777777 4 6666899888654 356789999999887765555554432 12 34432211
Q ss_pred ccccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHh-hhhhhcCCCCeeEEec
Q psy7047 172 KFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLG-TYPLLISDPTLWCVSA 234 (469)
Q Consensus 172 ~~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~-~L~ly~~D~sI~~ISA 234 (469)
...+.++-.+.|+.. -+.+.+++++-||.++|+|+.-+.+ +..+-++...+.+..+
T Consensus 72 ---~~f~~a~arN~g~~~----A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~ 128 (281)
T PF10111_consen 72 ---EPFSRAKARNIGAKY----ARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPC 128 (281)
T ss_pred ---CCcCHHHHHHHHHHH----cCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 012445433334433 4789999999999999999988877 2223334445555443
No 58
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=96.57 E-value=0.021 Score=53.53 Aligned_cols=111 Identities=21% Similarity=0.298 Sum_probs=70.1
Q ss_pred ceEEEEecCCh-h-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcceEeecCCCCCccCCccccccccch
Q psy7047 100 IAIVVIACNRV-T-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYF 177 (469)
Q Consensus 100 iPVlV~a~NRP-d-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~y~ 177 (469)
+||.||.=.|- + ..+..+.+.+... .+..+=+.||......+....|..... ... ......+++ ++|+
T Consensus 2 ~ki~vInL~~~~~Rr~~~~~~~~~~~~---~~e~~~Avdg~~l~~~~~~~~~~~~~~---~~~-~~~~lt~gE--iGC~- 71 (200)
T PF01755_consen 2 IKIYVINLDRSTERRERIQQQLAKLGI---NFEFFDAVDGRDLSEDELFRRYDPELF---KKR-YGRPLTPGE--IGCA- 71 (200)
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHcCC---ceEEEEeecccccchHHHHHHhhhhhh---hcc-ccccCCcce--Eeeh-
Confidence 57888886665 5 7777777776632 467888899987665444455532211 100 011222333 4554
Q ss_pred hhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhc
Q psy7047 178 KIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLI 224 (469)
Q Consensus 178 ~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~ 224 (469)
.+|++ +...+.+ -+.+.++|||||..++++|-+.+++++....
T Consensus 72 --lSH~~-~w~~~v~-~~~~~~lIlEDDv~~~~~f~~~l~~~~~~~~ 114 (200)
T PF01755_consen 72 --LSHIK-AWQRIVD-SGLEYALILEDDVIFDPDFKEFLEEILSHIP 114 (200)
T ss_pred --hhHHH-HHHHHHH-cCCCeEEEEeccccccccHHHHHHHHHhhcc
Confidence 34543 3444443 2679999999999999999998888877766
No 59
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=96.53 E-value=0.022 Score=62.29 Aligned_cols=185 Identities=17% Similarity=0.172 Sum_probs=104.2
Q ss_pred CCcceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhh---cceEeecCCCCCccCCccccc
Q psy7047 97 KDAIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQN---QVHLIQQPNQQDIAVPPKEKK 172 (469)
Q Consensus 97 ~~~iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~---~i~~i~~~d~~~i~~~~~~k~ 172 (469)
.+.+.|+|-|||=.+ +.++|++++.... .+++.|+|..|++.+++.++++.... ++..+..+..+ +.
T Consensus 65 ~p~vaIlIPA~NE~~vI~~~l~s~L~~ld-Y~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~g-----p~--- 135 (504)
T PRK14716 65 EKRIAIFVPAWREADVIGRMLEHNLATLD-YENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDG-----PT--- 135 (504)
T ss_pred CCceEEEEeccCchhHHHHHHHHHHHcCC-CCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCC-----CC---
Confidence 456899999999999 9999999765421 14568999999998888777776542 23222221111 10
Q ss_pred cccchhhhhhHHHHHHHhhh--h---ccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEe--cCCCCCCCccc-
Q psy7047 173 FKGYFKIARHYGWALNQMFY--E---FNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVS--AWNDNGKPTLI- 244 (469)
Q Consensus 173 ~~~y~~Ia~Hyk~aLs~vF~--~---~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~IS--AwNdnG~~~~v- 244 (469)
+=+.-.++|+..++. . .+++.+++++=|..++||++..|++.++ |..+.++. +.|.+......
T Consensus 136 -----~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~----~~~~VQ~pv~~~~~~~~~~~ag 206 (504)
T PRK14716 136 -----SKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLP----RHDFVQLPVFSLPRDWGEWVAG 206 (504)
T ss_pred -----CHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcC----CCCEEecceeccCCchhHHHHH
Confidence 012223345554432 1 1468999999999999999999887643 44332221 12221110000
Q ss_pred CCCCCc------------ceeecCCCCccccccchhhHHHhhc-----CCCCC--CccchhccccccCCCceee
Q psy7047 245 DTSSSD------------LLYRTDFFPGLGWMLTKDLWDEISV-----KWPRS--YWDDWIRQPEQRKDRACIR 299 (469)
Q Consensus 245 d~~d~~------------~lyRsdffPglGWmtwrr~W~El~p-----kWP~~--~WD~w~r~~~~r~gr~cI~ 299 (469)
...+.. .+-......|-|=+.+|++-+++.. .|+.. ..|.=+-....++|..|++
T Consensus 207 ~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y 280 (504)
T PRK14716 207 TYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIF 280 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 000000 0111111235677888888888721 26543 2333333345778888776
No 60
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.30 E-value=0.05 Score=56.23 Aligned_cols=159 Identities=14% Similarity=0.148 Sum_probs=100.4
Q ss_pred CCcceEEEEecCChh--HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcce-EeecCCCCCccCCcccccc
Q psy7047 97 KDAIAIVVIACNRVT--VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVH-LIQQPNQQDIAVPPKEKKF 173 (469)
Q Consensus 97 ~~~iPVlV~a~NRPd--l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~-~i~~~d~~~i~~~~~~k~~ 173 (469)
.+.+-|+|-+||=+. +.+|+++++++.... .+++|..||+.+++.+.+++++.+.. .++.. .. .+++
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~----~~---~~~~- 122 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILEELGAEYGPNFRVI----YP---EKKN- 122 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHHHHHhhcCcceEEE----ec---cccC-
Confidence 478999999999885 999999999997433 57999999999999999998875431 11110 00 0000
Q ss_pred ccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCC-CC--------CCccc
Q psy7047 174 KGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWND-NG--------KPTLI 244 (469)
Q Consensus 174 ~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNd-nG--------~~~~v 244 (469)
.+-+. |++..+....++-|++++-|-.+.|||+. ++.+.+++++.+.+++.-.. ++ ....+
T Consensus 123 ---~gK~~----al~~~l~~~~~d~V~~~DaD~~~~~d~l~---~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~ 192 (439)
T COG1215 123 ---GGKAG----ALNNGLKRAKGDVVVILDADTVPEPDALR---ELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAI 192 (439)
T ss_pred ---ccchH----HHHHHHhhcCCCEEEEEcCCCCCChhHHH---HHHhhhcCCCeeEEeCCceeeecCChhhhcchhcch
Confidence 11122 45555554569999999999999999995 55566666666644443311 11 10000
Q ss_pred CC--------CCCcceeecCCCCccccccchhhHHHhhc
Q psy7047 245 DT--------SSSDLLYRTDFFPGLGWMLTKDLWDEISV 275 (469)
Q Consensus 245 d~--------~d~~~lyRsdffPglGWmtwrr~W~El~p 275 (469)
.. ......-...+.+|.+=+..|++.++...
T Consensus 193 ~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g~ 231 (439)
T COG1215 193 EYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVGG 231 (439)
T ss_pred hhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhCC
Confidence 00 00011112345677778888888888773
No 61
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=95.29 E-value=0.14 Score=58.59 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=70.6
Q ss_pred CCcceEEEEecCChh-HHHHHHHHHh-cCCCCCCCcEEEEeCCCChhHHHHHHhhhhc---ceEeecCCCCCccCCcccc
Q psy7047 97 KDAIAIVVIACNRVT-VSRCLDLLIK-YRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ---VHLIQQPNQQDIAVPPKEK 171 (469)
Q Consensus 97 ~~~iPVlV~a~NRPd-l~RtLesLlk-~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~---i~~i~~~d~~~i~~~~~~k 171 (469)
.+.+.|+|-+||=.. ..+++++++. .... .+.|+|..|+++.+|.++++....+ +..+..+.. .+.
T Consensus 62 ~~~vsIlVPa~nE~~vi~~~i~~ll~~ldYP--~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~-----g~~-- 132 (727)
T PRK11234 62 EKPLAIMVPAWNETGVIGNMAELAATTLDYE--NYHIFVGTYPNDPATQADVDAVCARFPNVHKVVCARP-----GPT-- 132 (727)
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHhCCCC--CeEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCC-----CCC--
Confidence 347899999999999 9999999863 3222 2689999887777777777665422 222222110 011
Q ss_pred ccccchhhhhhHHHHHHHhhhh-----ccccEEEEEccCcccCchHHHHHHhhh
Q psy7047 172 KFKGYFKIARHYGWALNQMFYE-----FNFSTAIVIEDDLDIAPDFFEYFLGTY 220 (469)
Q Consensus 172 ~~~~y~~Ia~Hyk~aLs~vF~~-----~~~~~vIILEDDLvvSPDFf~Yf~~~L 220 (469)
+=+.-.++|+..++.. ..++-+||.+=|++++||++.+++.+.
T Consensus 133 ------gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~~~~~l~ 180 (727)
T PRK11234 133 ------SKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELRLFNYLV 180 (727)
T ss_pred ------CHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHHHHHhhc
Confidence 1133344566555431 145678899999999999999776554
No 62
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=94.90 E-value=0.22 Score=56.68 Aligned_cols=108 Identities=16% Similarity=0.280 Sum_probs=71.1
Q ss_pred CcceEEEEecCChh-HHHHHHHHH-hcCCCCCCCcEEEEeCCCChhHHHHHHhhhh---cceEeecCCCCCccCCccccc
Q psy7047 98 DAIAIVVIACNRVT-VSRCLDLLI-KYRPSVEKFPIIVSQDCNHEATTNVIKSYQN---QVHLIQQPNQQDIAVPPKEKK 172 (469)
Q Consensus 98 ~~iPVlV~a~NRPd-l~RtLesLl-k~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~---~i~~i~~~d~~~i~~~~~~k~ 172 (469)
..+.|+|-|||=.+ +.+++++++ +.... .+.|+|-.+.++.+|.++++.... .+..+..++.++.
T Consensus 71 ~~vsIlVPa~nE~~VI~~~v~~ll~~ldYp--~~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~~gp~-------- 140 (703)
T PRK15489 71 QPLAIMVPAWKEYDVIAKMIENMLATLDYR--RYVIFVGTYPNDAETITEVERMRRRYKRLVRVEVPHDGPT-------- 140 (703)
T ss_pred CceEEEEeCCCcHHHHHHHHHHHHhcCCCC--CeEEEEEecCCCccHHHHHHHHhccCCcEEEEEcCCCCCC--------
Confidence 47899999999999 999999986 33322 357888654444467676666542 3334444332111
Q ss_pred cccchhhhhhHHHHHHHhhhhc-----cccEEEEEccCcccCchHHHHHHhhh
Q psy7047 173 FKGYFKIARHYGWALNQMFYEF-----NFSTAIVIEDDLDIAPDFFEYFLGTY 220 (469)
Q Consensus 173 ~~~y~~Ia~Hyk~aLs~vF~~~-----~~~~vIILEDDLvvSPDFf~Yf~~~L 220 (469)
+=++-.++|+..+|..- .++.+++.+=|-+++||+|.+|+..+
T Consensus 141 -----gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~~~~~ 188 (703)
T PRK15489 141 -----CKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYFNYLL 188 (703)
T ss_pred -----CHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHHHhhc
Confidence 11444456777665411 24458999999999999999997555
No 63
>KOG2978|consensus
Probab=93.06 E-value=0.3 Score=47.62 Aligned_cols=103 Identities=21% Similarity=0.398 Sum_probs=68.2
Q ss_pred ceEEEEecCChh-HHHHHHHHHhcCC-CCCCCcEEEEeCCCChhHHHHHHh----hhh-cceEeecCCCCCccCCccccc
Q psy7047 100 IAIVVIACNRVT-VSRCLDLLIKYRP-SVEKFPIIVSQDCNHEATTNVIKS----YQN-QVHLIQQPNQQDIAVPPKEKK 172 (469)
Q Consensus 100 iPVlV~a~NRPd-l~RtLesLlk~rp-~~~~~~LiVsqDG~~~e~~~vv~~----y~~-~i~~i~~~d~~~i~~~~~~k~ 172 (469)
=.|++-+||--. +.-++.-+.+.-+ ...+++|+|-.|++.+.+.++++. |+. +| .+.++.++
T Consensus 5 YsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i-----------~l~pR~~k 73 (238)
T KOG2978|consen 5 YSVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNI-----------LLKPRTKK 73 (238)
T ss_pred eeEEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcE-----------EEEeccCc
Confidence 357888888665 5544444444332 244678999999998888777777 442 22 22233333
Q ss_pred cccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhh
Q psy7047 173 FKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYP 221 (469)
Q Consensus 173 ~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ 221 (469)
.++..-|.-|+.. ...+.+||++-||-=+|-|..=|-++.+
T Consensus 74 ----lGLgtAy~hgl~~----a~g~fiviMDaDlsHhPk~ipe~i~lq~ 114 (238)
T KOG2978|consen 74 ----LGLGTAYIHGLKH----ATGDFIVIMDADLSHHPKFIPEFIRLQK 114 (238)
T ss_pred ----ccchHHHHhhhhh----ccCCeEEEEeCccCCCchhHHHHHHHhh
Confidence 3566666666644 3689999999999999999987766654
No 64
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=92.93 E-value=0.47 Score=42.10 Aligned_cols=95 Identities=21% Similarity=0.288 Sum_probs=52.1
Q ss_pred EEEEec-CChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcceEeecCCCCCccCCccccccccchhh
Q psy7047 102 IVVIAC-NRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFKI 179 (469)
Q Consensus 102 VlV~a~-NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~y~~I 179 (469)
|.||.- +||+ ..+..+.+.... -.+..+=..||...........+... .++.. .....+.+ .+||
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~~---~~~~~~~Avd~~~~~~~~~~~~~~~~----~~~~~-~~~l~~gE--iGC~--- 68 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAALG---LDFEFFDAVDGKDLSEEELAALYDAL----FLPRY-GRPLTPGE--IGCF--- 68 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHcC---CCeEEEeccccccCCHHHHHHHhHHH----hhhhc-CCCCChhh--HHHH---
Confidence 455554 5566 777776666652 23567778888776544433322110 00000 01122233 4454
Q ss_pred hhhHHHHHHHhhhhccccEEEEEccCcccCch
Q psy7047 180 ARHYGWALNQMFYEFNFSTAIVIEDDLDIAPD 211 (469)
Q Consensus 180 a~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPD 211 (469)
.+|++ +...+.+ -+.+.++|||||..++|+
T Consensus 69 lSH~~-~w~~~~~-~~~~~alIlEDDv~~~~~ 98 (128)
T cd06532 69 LSHYK-LWQKIVE-SNLEYALILEDDAILDPD 98 (128)
T ss_pred HHHHH-HHHHHHH-cCCCeEEEEccCcEECCC
Confidence 33443 4444443 267999999999999999
No 65
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=92.30 E-value=0.93 Score=46.67 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=67.4
Q ss_pred cceEEEEecCChh---HHHHHHHHHhcCCCCC--CCcEEEEeCCCCh-hHHH----HHHhhhhc-----ceEeecCC---
Q psy7047 99 AIAIVVIACNRVT---VSRCLDLLIKYRPSVE--KFPIIVSQDCNHE-ATTN----VIKSYQNQ-----VHLIQQPN--- 160 (469)
Q Consensus 99 ~iPVlV~a~NRPd---l~RtLesLlk~rp~~~--~~~LiVsqDG~~~-e~~~----vv~~y~~~-----i~~i~~~d--- 160 (469)
..-|-|-+-.|+. |..||.||+..-...+ ..-|+|+.=-.+. .... +...|... +.+|.-+.
T Consensus 53 ~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p~~~Y 132 (297)
T PF04666_consen 53 KLCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISPPPSYY 132 (297)
T ss_pred eEEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEecccccC
Confidence 4778888899994 9999999999754333 2344454433322 2222 23334332 23333322
Q ss_pred --CCCccCCccccccccch--hhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcC
Q psy7047 161 --QQDIAVPPKEKKFKGYF--KIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLIS 225 (469)
Q Consensus 161 --~~~i~~~~~~k~~~~y~--~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~ 225 (469)
+.......+...-.... +-.--|-..+...-+ ..++.+.||||.+.+|+|++.+...+...+.
T Consensus 133 p~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~--~~~YyL~LEDDVia~~~f~~~i~~~v~~~~~ 199 (297)
T PF04666_consen 133 PDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQN--LGDYYLQLEDDVIAAPGFLSRIKRFVEAWES 199 (297)
T ss_pred CChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHh--cCCeEEEecCCeEechhHHHHHHHHHHHhcC
Confidence 11111000000000001 111122222222222 5689999999999999999999999998775
No 66
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=90.45 E-value=0.7 Score=46.48 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=60.8
Q ss_pred ceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHh-hhhcceEeecCCCCCccCCccccccccch
Q psy7047 100 IAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKS-YQNQVHLIQQPNQQDIAVPPKEKKFKGYF 177 (469)
Q Consensus 100 iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~-y~~~i~~i~~~d~~~i~~~~~~k~~~~y~ 177 (469)
.|+-||.-.+.. -..+.+.+....+. ..|.++=..||..++..+.... +.. |..-......++| ++||
T Consensus 3 ~~~~vIsL~~s~~R~~~~~~~f~~~~~-~~f~~~~av~~~~~~~~~~~~~~~~~------~~~~~~~~ls~gE--iGC~- 72 (255)
T COG3306 3 MPIHVISLKSSQERLEHVAETFEALGG-LPFQRFDAVNGKSEDEKDLIAELDAG------HLLYEGRRLSPGE--IGCY- 72 (255)
T ss_pred cceehhhhhhhHHHHHHHHHHHhhccC-CCceEeeccCccccCHHHHhccccch------hhhhhccccCchh--HHHH-
Confidence 455566655554 33444444444332 4456666677763333222211 110 1111123344444 4565
Q ss_pred hhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhh
Q psy7047 178 KIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLL 223 (469)
Q Consensus 178 ~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly 223 (469)
.+|++ ......+ .+..++.|+|||++++.||-.+..+.+...
T Consensus 73 --lSH~~-lw~~~~~-~~~~yi~I~EDDV~l~~~f~~~l~~~~~~~ 114 (255)
T COG3306 73 --LSHLK-LWKKALE-ENLPYILILEDDVVLGEDFEEFLEDDLKLP 114 (255)
T ss_pred --HHHHH-HHHHHHh-CCCCeEEEecccccccccHHHHHHHHHhhh
Confidence 45654 2222222 267899999999999999999999988875
No 67
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=90.09 E-value=1.4 Score=41.57 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=69.4
Q ss_pred EEEecCCh--h-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcc---eEeecCCCCCccCCccccccccc
Q psy7047 103 VVIACNRV--T-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQV---HLIQQPNQQDIAVPPKEKKFKGY 176 (469)
Q Consensus 103 lV~a~NRP--d-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i---~~i~~~d~~~i~~~~~~k~~~~y 176 (469)
++++++.. . +.-++.||+++.+......++|..|+-.++..+.++....++ ..+..++...............+
T Consensus 2 i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (250)
T PF01501_consen 2 IVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDISMLEEFQFNSPSKRH 81 (250)
T ss_dssp EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSGGHHH--TTS-HCCTC
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchHHhhhhhhhccccccc
Confidence 45666666 4 889999999997654556688888887777666666655432 11222221110000011112233
Q ss_pred hhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEec
Q psy7047 177 FKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSA 234 (469)
Q Consensus 177 ~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISA 234 (469)
...+.++|.-+-.+|. +++++|.|+.|.++--|-=+.|. +-..+.-+.++..
T Consensus 82 ~~~~~~~rl~i~~ll~--~~drilyLD~D~lv~~dl~~lf~----~~~~~~~~~a~~~ 133 (250)
T PF01501_consen 82 FSPATFARLFIPDLLP--DYDRILYLDADTLVLGDLDELFD----LDLQGKYLAAVED 133 (250)
T ss_dssp GGGGGGGGGGHHHHST--TSSEEEEE-TTEEESS-SHHHHC-------TTSSEEEEE-
T ss_pred ccHHHHHHhhhHHHHh--hcCeEEEEcCCeeeecChhhhhc----ccchhhhcccccc
Confidence 4455555665666655 89999999999999776644443 2223445566654
No 68
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=89.22 E-value=2.5 Score=41.03 Aligned_cols=120 Identities=15% Similarity=0.256 Sum_probs=72.3
Q ss_pred EEEecCCh--h-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhh----hcceEeecCCCCCccCCcccccccc
Q psy7047 103 VVIACNRV--T-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQ----NQVHLIQQPNQQDIAVPPKEKKFKG 175 (469)
Q Consensus 103 lV~a~NRP--d-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~----~~i~~i~~~d~~~i~~~~~~k~~~~ 175 (469)
+++++|.. . +.-++.||+++.+. ....++|..||-.++..+.++... ..+..+ ..+.......+. ...
T Consensus 3 I~~~~d~~y~~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~-~i~~~~~~~~~~---~~~ 77 (248)
T cd04194 3 IVFAIDDNYAPYLAVTIKSILANNSK-RDYDFYILNDDISEENKKKLKELLKKYNSSIEFI-KIDNDDFKFFPA---TTD 77 (248)
T ss_pred EEEEecHhhHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEE-EcCHHHHhcCCc---ccc
Confidence 45667776 3 88999999998654 467899999986666666555543 233221 111110100000 111
Q ss_pred chhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEe
Q psy7047 176 YFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVS 233 (469)
Q Consensus 176 y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~IS 233 (469)
....+.-++.-+..++. +++++|.|+-|+++--|.=+.|+. ++ .+..+.++.
T Consensus 78 ~~~~~~y~rl~l~~ll~--~~~rvlylD~D~lv~~di~~L~~~--~~--~~~~~aa~~ 129 (248)
T cd04194 78 HISYATYYRLLIPDLLP--DYDKVLYLDADIIVLGDLSELFDI--DL--GDNLLAAVR 129 (248)
T ss_pred cccHHHHHHHHHHHHhc--ccCEEEEEeCCEEecCCHHHHhcC--Cc--CCCEEEEEe
Confidence 23344455666666666 799999999999998888766643 22 334455554
No 69
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=86.50 E-value=5.6 Score=38.79 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=69.6
Q ss_pred ceEEEEecCCh--h-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhh----hhcceEeecCCCCCccCCccccc
Q psy7047 100 IAIVVIACNRV--T-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSY----QNQVHLIQQPNQQDIAVPPKEKK 172 (469)
Q Consensus 100 iPVlV~a~NRP--d-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y----~~~i~~i~~~d~~~i~~~~~~k~ 172 (469)
+.|+++|++.- . +.-++.||+++.+. ...++|..|+-.++..+.++.. +.+++.+ ..+..........
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~-~~~~~~~~~~~~~-- 75 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTFKAALDNLRKLYNFNYELI-PVDILDSVDSEHL-- 75 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHHHHHHHHHHhccCceEEEE-eccccCcchhhhh--
Confidence 35777887733 4 99999999998643 5679999998666555544442 2223222 1111110000000
Q ss_pred cccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHH
Q psy7047 173 FKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFL 217 (469)
Q Consensus 173 ~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~ 217 (469)
..+...+..+|..|..++. .++++|.|+.|+++--|.=+.|+
T Consensus 76 -~~~~~~~~y~RL~i~~llp--~~~kvlYLD~D~iv~~di~~L~~ 117 (246)
T cd00505 76 -KRPIKIVTLTKLHLPNLVP--DYDKILYVDADILVLTDIDELWD 117 (246)
T ss_pred -cCccccceeHHHHHHHHhh--ccCeEEEEcCCeeeccCHHHHhh
Confidence 1234566667777777777 79999999999999988876664
No 70
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=86.17 E-value=12 Score=41.75 Aligned_cols=113 Identities=16% Similarity=0.208 Sum_probs=72.9
Q ss_pred cceEEEEecCCh-----h-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHH-HH-------HHhhh--hcceEeecCCCC
Q psy7047 99 AIAIVVIACNRV-----T-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATT-NV-------IKSYQ--NQVHLIQQPNQQ 162 (469)
Q Consensus 99 ~iPVlV~a~NRP-----d-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~-~v-------v~~y~--~~i~~i~~~d~~ 162 (469)
.++|++-+||-- . |+-+-+||.+- ...+.|++||-+|-.+.++. .+ .++-+ .+|-+-...+
T Consensus 145 rTAilmPiynEd~~rVfAgLrA~~eSla~T-g~~~~FD~FVLSDs~dpdialAEq~a~~~l~~e~~g~~~ifYRrRr~-- 221 (736)
T COG2943 145 RTAILMPIYNEDVNRVFAGLRATYESLAAT-GHAEHFDFFVLSDSRDPDIALAEQKAWAELCRELGGEGNIFYRRRRR-- 221 (736)
T ss_pred ceeEEeeccccCHHHHHHHHHHHHHHHHhh-CCcccceEEEEcCCCCchhhhhHHHHHHHHHHHhCCCCceeeehHhh--
Confidence 499999999953 4 77778888877 66789999999999887641 11 22221 1121111000
Q ss_pred CccCCccccccccchhhhhhHHHHHHHhhhhc--cccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEe
Q psy7047 163 DIAVPPKEKKFKGYFKIARHYGWALNQMFYEF--NFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVS 233 (469)
Q Consensus 163 ~i~~~~~~k~~~~y~~Ia~Hyk~aLs~vF~~~--~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~IS 233 (469)
++..+. ..|+. ..... .|++.+||+-|-+.++|=+ ..+..+++.+|...-|-
T Consensus 222 --n~~RKa------GNIaD--------fcrRwG~~Y~~MlVLDADSvMtgd~l---vrLv~~ME~~P~aGlIQ 275 (736)
T COG2943 222 --NVKRKA------GNIAD--------FCRRWGSAYSYMLVLDADSVMTGDCL---VRLVRLMEANPDAGLIQ 275 (736)
T ss_pred --hhcccc------cCHHH--------HHHHhCcccceEEEeecccccCchHH---HHHHHHHhhCCCCceee
Confidence 000000 12332 12222 6999999999999999975 67888899999877665
No 71
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=79.17 E-value=7 Score=38.08 Aligned_cols=49 Identities=14% Similarity=0.279 Sum_probs=34.2
Q ss_pred hhhhhHHHHHHHhhhhccccEEEEEccCcccC-chHHHHHHhhhhhhcCCCCeeEEe
Q psy7047 178 KIARHYGWALNQMFYEFNFSTAIVIEDDLDIA-PDFFEYFLGTYPLLISDPTLWCVS 233 (469)
Q Consensus 178 ~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvS-PDFf~Yf~~~L~ly~~D~sI~~IS 233 (469)
++++-|+.|+.. -+++.+|.|=||+.+. ++|+ ..+++.++.|+++..|.
T Consensus 41 s~~~~yN~a~~~----a~~~ylvflHqDv~i~~~~~l---~~il~~~~~~~~~G~iG 90 (217)
T PF13712_consen 41 SMAAAYNEAMEK----AKAKYLVFLHQDVFIINENWL---EDILEIFEEDPNIGMIG 90 (217)
T ss_dssp -TTTHHHHHGGG------SSEEEEEETTEE-SSHHHH---HHHHHHHHH-TTEEEEE
T ss_pred CHHHHHHHHHHh----CCCCEEEEEeCCeEEcchhHH---HHHHHHHhhCCCccEEE
Confidence 467766666655 3789999999999995 5555 77888887899987664
No 72
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=78.14 E-value=2.3 Score=44.64 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=58.1
Q ss_pred EEecCChhHHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcceEeecCCCCCccCCccccccccchhhhhhH
Q psy7047 104 VIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFKIARHY 183 (469)
Q Consensus 104 V~a~NRPdl~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~y~~Ia~Hy 183 (469)
||.--||+|.--|++- ||--+.++|||-|||.-.+.-++-+-|.-.+ ..+-+ +....+.+....|.+-++
T Consensus 13 vi~~~~~~l~~~~~~w---r~~~~~~hliiv~d~~~~~~~~~p~g~~~~~--y~~~d---i~~~lg~~~~i~~~~~a~-- 82 (348)
T PF03214_consen 13 VIPALRPNLTDFLEEW---RPFFSPYHLIIVQDPDPNEEIKVPEGFDYEV--YNRND---IERVLGAKTLIPFKGDAC-- 82 (348)
T ss_pred EeecccccHHHHHHHH---HHhhcceeEEEEeCCCccccccCCcccceee--ecHhh---HHhhcCCcccccccccch--
Confidence 3444577765555554 4445678999999998765544433332111 11111 110000111112222221
Q ss_pred HHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEe
Q psy7047 184 GWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVS 233 (469)
Q Consensus 184 k~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~IS 233 (469)
..+..+.. +.+++|.++|||.++.|++ -..++-+...-..-.++
T Consensus 83 -R~fGyL~s--~~~yivsiDDD~~P~~D~~---g~~~~~v~qh~~~~~~~ 126 (348)
T PF03214_consen 83 -RNFGYLVS--KKDYIVSIDDDCLPAKDDF---GTHIDAVAQHVENLSTP 126 (348)
T ss_pred -hhhHhhhc--ccceEEEEccccccccCCc---cceehhhhccceeeecc
Confidence 12222333 6799999999999999987 33333344444444443
No 73
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=77.61 E-value=6.4 Score=39.26 Aligned_cols=93 Identities=20% Similarity=0.336 Sum_probs=51.0
Q ss_pred EEEEe-cCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHH-HHHhhhhcceEeecCCCCCccCCccccccccchh
Q psy7047 102 IVVIA-CNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTN-VIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFK 178 (469)
Q Consensus 102 VlV~a-~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~-vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~y~~ 178 (469)
|++.+ ++|++ |.+.|..+.+. |... .|+|.=-++...... ..-..+..|.++.+...
T Consensus 3 vvi~t~~~R~~~L~~~l~~l~~~-~~l~--~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~n----------------- 62 (247)
T PF09258_consen 3 VVINTSYKRSDLLKRLLRHLASS-PSLR--KIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRN----------------- 62 (247)
T ss_dssp EEEEE-SS-HHHHHHHHHHHTTS-TTEE--EEEEEEE-TS--THHHHHT---S-EEEEEESSH-----------------
T ss_pred EEEEecccchHHHHHHHHHHHcC-CCCC--eEEEEeCCCCCCCcccccCCCCceEEEEecCCc-----------------
Confidence 67788 99999 99999999666 5443 355554444332222 11122223444433211
Q ss_pred hhhhHHHHHHHhhh---hccccEEEEEccCcccCchHHHHHHhhhh
Q psy7047 179 IARHYGWALNQMFY---EFNFSTAIVIEDDLDIAPDFFEYFLGTYP 221 (469)
Q Consensus 179 Ia~Hyk~aLs~vF~---~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ 221 (469)
.|+.-|. .+.-+.|+.++||+.++++=++|-=++-.
T Consensus 63 -------sLnnRF~p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~ 101 (247)
T PF09258_consen 63 -------SLNNRFLPDPEIETDAVLSLDDDVMLSCDELEFAFQVWR 101 (247)
T ss_dssp -------HGGGGGS--TT--SSEEEEEETTEEE-HHHHHHHHHHHC
T ss_pred -------cHHhcCcCccccCcceEEEecCCcccCHHHHHHHHHHHH
Confidence 2222222 23578999999999999999987655544
No 74
>KOG4179|consensus
Probab=76.63 E-value=18 Score=39.38 Aligned_cols=112 Identities=17% Similarity=0.229 Sum_probs=65.2
Q ss_pred EEEEe-cCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcc-eEeecCCCCCccCCccccccccchh
Q psy7047 102 IVVIA-CNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQV-HLIQQPNQQDIAVPPKEKKFKGYFK 178 (469)
Q Consensus 102 VlV~a-~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i-~~i~~~d~~~i~~~~~~k~~~~y~~ 178 (469)
|-+|- -.||+ ..|++..+-..- . ...++=+.||..-.+.++-.. +.++ -+.+.| .+..+...+| .+|+
T Consensus 294 IfmInLkRR~eRreRM~r~fde~g--I-e~~~veAvDgk~lnt~~~~~l-gv~~LpGY~DP-ys~Rplt~GE--iGCF-- 364 (568)
T KOG4179|consen 294 IFMINLKRRPERRERMLRIFDELG--I-EYSLVEAVDGKKLNTSQLEAL-GVQMLPGYRDP-YSGRPLTKGE--IGCF-- 364 (568)
T ss_pred EEEEecccChHHHHHHHHHHHHhc--c-eEEEEecccccccchhHHHhc-CceecCCccCc-ccCCcccCcc--eeee--
Confidence 33343 56788 999998887763 2 236888999987665444222 2111 111111 1112222222 5665
Q ss_pred hhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcC
Q psy7047 179 IARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLIS 225 (469)
Q Consensus 179 Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~ 225 (469)
-+||+-= ..|.+ .++++++|+|||+-..++|..=...++.-.+.
T Consensus 365 -LSHY~iW-~evV~-r~l~kvlvfEDD~RFe~~f~~rl~~lm~d~~~ 408 (568)
T KOG4179|consen 365 -LSHYNIW-KEVVD-RGLEKVLVFEDDLRFEHDFRTRLMRLMQDVDA 408 (568)
T ss_pred -hhHHHHH-HHHHH-hccceEEEecccccccHHHHHHHHHHHHHHHh
Confidence 3466521 11222 28999999999999999998776666665543
No 75
>PLN02523 galacturonosyltransferase
Probab=75.16 E-value=81 Score=35.50 Aligned_cols=114 Identities=15% Similarity=0.241 Sum_probs=75.4
Q ss_pred CcceEEEEecCChhHHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHH---Hhhh-hc--ceEeecCCC-C--CccC--
Q psy7047 98 DAIAIVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVI---KSYQ-NQ--VHLIQQPNQ-Q--DIAV-- 166 (469)
Q Consensus 98 ~~iPVlV~a~NRPdl~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv---~~y~-~~--i~~i~~~d~-~--~i~~-- 166 (469)
...+++||+=|=+...=++.|++.+.......-+.|..|+-.....+.. ..+. .. |..|.+-++ . .+++
T Consensus 247 ~l~Hy~ifSdNvlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Iedf~~ln~~~~pvlk 326 (559)
T PLN02523 247 SLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVEDYKFLNSSYVPVLR 326 (559)
T ss_pred CcceEEEecCcchhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeehhhhcccccchHHH
Confidence 4678999999977799999999999655566778888898775444432 2221 11 222332111 0 0010
Q ss_pred -------------------Ccccccc----ccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHH
Q psy7047 167 -------------------PPKEKKF----KGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFF 213 (469)
Q Consensus 167 -------------------~~~~k~~----~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf 213 (469)
.....++ ..|..++.|++.-|-.+|. +.++||.|+||+++--|-=
T Consensus 327 ~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP--~ldKVLYLD~DVVVq~DLs 394 (559)
T PLN02523 327 QLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYP--KLHRILFLDDDVVVQKDLT 394 (559)
T ss_pred hhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhc--ccCeEEEEeCCEEecCCHH
Confidence 0000111 1567889999999999998 7999999999999988764
No 76
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=69.83 E-value=33 Score=35.68 Aligned_cols=124 Identities=11% Similarity=0.224 Sum_probs=73.7
Q ss_pred CcceEEEEecCCh--h-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHH----HHHhhhhcceEeecCCCCCccCCccc
Q psy7047 98 DAIAIVVIACNRV--T-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTN----VIKSYQNQVHLIQQPNQQDIAVPPKE 170 (469)
Q Consensus 98 ~~iPVlV~a~NRP--d-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~----vv~~y~~~i~~i~~~d~~~i~~~~~~ 170 (469)
..++| +++++.- . +.-+|.||+.+.+. ....++|..||-.++..+ .++.|+.++..+. .+......-+.
T Consensus 24 ~~i~I-v~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~-id~~~~~~~~~- 99 (334)
T PRK15171 24 NSLDI-AYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYISDADKQRFSALAKQYNTRINIYL-INCERLKSLPS- 99 (334)
T ss_pred CceeE-EEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEE-eCHHHHhCCcc-
Confidence 34664 5677776 4 99999999987554 357899999987765433 3445544443222 22100000000
Q ss_pred cccccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEe
Q psy7047 171 KKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVS 233 (469)
Q Consensus 171 k~~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~IS 233 (469)
......+.=|+..+-.+|.. .+++||-|+-|+++--|.=+.++- ++ .+..+.++.
T Consensus 100 ---~~~~s~atY~Rl~ip~llp~-~~dkvLYLD~Diiv~~dl~~L~~~--dl--~~~~~aav~ 154 (334)
T PRK15171 100 ---TKNWTYATYFRFIIADYFID-KTDKVLYLDADIACKGSIKELIDL--DF--AENEIAAVV 154 (334)
T ss_pred ---cCcCCHHHHHHHHHHHhhhh-hcCEEEEeeCCEEecCCHHHHHhc--cC--CCCeEEEEE
Confidence 11234455556666676641 599999999999999888766543 11 224466554
No 77
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=67.02 E-value=11 Score=34.85 Aligned_cols=43 Identities=16% Similarity=0.266 Sum_probs=35.4
Q ss_pred EEEecCChhHHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhh
Q psy7047 103 VVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQN 151 (469)
Q Consensus 103 lV~a~NRPdl~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~ 151 (469)
-+.++.||.+...|+.|.+. ++|+|+.-|...-+..+++..+.
T Consensus 38 ~~~v~~RPgl~eFL~~l~~~------yei~I~Ts~~~~yA~~il~~ldp 80 (162)
T TIGR02251 38 PVYVFKRPHVDEFLERVSKW------YELVIFTASLEEYADPVLDILDR 80 (162)
T ss_pred EEEEEECCCHHHHHHHHHhc------CEEEEEcCCcHHHHHHHHHHHCc
Confidence 46789999999999998654 46999999998877888887763
No 78
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=66.87 E-value=10 Score=35.54 Aligned_cols=45 Identities=18% Similarity=0.403 Sum_probs=34.0
Q ss_pred HHHhhhh-ccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecC
Q psy7047 187 LNQMFYE-FNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAW 235 (469)
Q Consensus 187 Ls~vF~~-~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAw 235 (469)
|-..++. .+++.++|+++|..++||++.-+-..+ + ||.+..|++.
T Consensus 22 L~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l---~-~p~vglVt~~ 67 (175)
T PF13506_consen 22 LAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPL---A-DPGVGLVTGL 67 (175)
T ss_pred HHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHH---h-CCCCcEEEec
Confidence 3444443 589999999999999999986655544 3 5889888863
No 79
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=61.37 E-value=46 Score=33.86 Aligned_cols=125 Identities=16% Similarity=0.197 Sum_probs=68.2
Q ss_pred ceEEEEecC-ChhHHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHH-Hh---hhhcceEeecCCC-CCccCCcccccc
Q psy7047 100 IAIVVIACN-RVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVI-KS---YQNQVHLIQQPNQ-QDIAVPPKEKKF 173 (469)
Q Consensus 100 iPVlV~a~N-RPdl~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv-~~---y~~~i~~i~~~d~-~~i~~~~~~k~~ 173 (469)
++|++-+.| +|.+.-+|.||+.+. .....++|..|+-..+..+.. +. ++.++..+.-.+. +.+...+.
T Consensus 3 ~~iv~~~~~y~~~~~~~i~Sil~n~--~~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~~~~~~~~~---- 76 (280)
T cd06431 3 VAIVCAGYNASRDVVTLVKSVLFYR--RNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVSWIPN---- 76 (280)
T ss_pred EEEEEccCCcHHHHHHHHHHHHHcC--CCCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhhhhhccCcc----
Confidence 455555545 234999999999984 345789999998766543332 22 3333332221111 11110000
Q ss_pred ccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEe
Q psy7047 174 KGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVS 233 (469)
Q Consensus 174 ~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~IS 233 (469)
..|-.....++..|-.+|.. .+++||.|+-|+++--|--+-++...+ + .+..+.++.
T Consensus 77 ~~~s~~y~y~RL~ip~llp~-~~dkvLYLD~Diiv~~di~eL~~~~~~-~-~~~~~~a~v 133 (280)
T cd06431 77 KHYSGIYGLMKLVLTEALPS-DLEKVIVLDTDITFATDIAELWKIFHK-F-TGQQVLGLV 133 (280)
T ss_pred cchhhHHHHHHHHHHHhchh-hcCEEEEEcCCEEEcCCHHHHHHHhhh-c-CCCcEEEEe
Confidence 01111113346667777751 499999999999998776554444111 1 144466554
No 80
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=60.58 E-value=28 Score=29.04 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=21.2
Q ss_pred cCCChhhHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy7047 33 FSNNIGDVDKALSDLSADINSELEIHNLMMESVQQSIV 70 (469)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (469)
..+-.+++.+++.++..+++.-+...+.++++++....
T Consensus 31 ~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~ 68 (90)
T PF06103_consen 31 VNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLE 68 (90)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556666666666666666666666555443
No 81
>KOG2977|consensus
Probab=60.31 E-value=27 Score=36.29 Aligned_cols=58 Identities=24% Similarity=0.245 Sum_probs=42.4
Q ss_pred cCCCCCcceEEEEecCChh-----HHHHHHHHHhcCCC--CCCCcEEEEeCCCChhHHHHHHhhh
Q psy7047 93 FHYSKDAIAIVVIACNRVT-----VSRCLDLLIKYRPS--VEKFPIIVSQDCNHEATTNVIKSYQ 150 (469)
Q Consensus 93 ~~~~~~~iPVlV~a~NRPd-----l~RtLesLlk~rp~--~~~~~LiVsqDG~~~e~~~vv~~y~ 150 (469)
.++.+...-|+|-+||-+. +.-|++.|.+.-.. +-.+.++|..||+.+.+.+++-+|.
T Consensus 62 d~~~~~~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s 126 (323)
T KOG2977|consen 62 DSPEKMYLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFS 126 (323)
T ss_pred cChhhceeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHH
Confidence 3444557899999999884 55666666664322 2356899999999999988887766
No 82
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=58.93 E-value=70 Score=33.31 Aligned_cols=106 Identities=12% Similarity=0.208 Sum_probs=64.1
Q ss_pred EEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCC-CChhHHHHHHhhh----hcceE-eecCCCCCccCCcccc-ccc
Q psy7047 103 VVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDC-NHEATTNVIKSYQ----NQVHL-IQQPNQQDIAVPPKEK-KFK 174 (469)
Q Consensus 103 lV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG-~~~e~~~vv~~y~----~~i~~-i~~~d~~~i~~~~~~k-~~~ 174 (469)
+|.+-+|.+ +.-+|.|++.+. .....++|+.|. ..++..+..+++. ..+.+ +.. +..+..+. ...
T Consensus 5 vv~~g~~~~~~~~~lkSil~~n--~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~-----I~~P~~~~~~ws 77 (304)
T cd06430 5 VVACGERLEETLTMLKSAIVFS--QKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHP-----ITFPSGNAAEWK 77 (304)
T ss_pred EEEcCCcHHHHHHHHHHHHHhC--CCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEE-----EecCccchhhhh
Confidence 445556777 999999998875 356789999998 5555555455552 22211 111 22222210 111
Q ss_pred cchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHH
Q psy7047 175 GYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFL 217 (469)
Q Consensus 175 ~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~ 217 (469)
...+-+.-|+.-+..++. ..+++|.|+=|+++--|-=+.++
T Consensus 78 ~l~~~~~y~RL~ip~lLp--~~dkvLYLD~Dii~~~dI~eL~~ 118 (304)
T cd06430 78 KLFKPCAAQRLFLPSLLP--DVDSLLYVDTDILFLRPVEEIWS 118 (304)
T ss_pred hcccHHHHHHHHHHHHhh--hhceEEEeccceeecCCHHHHHH
Confidence 111123344556667776 78999999999999888755554
No 83
>PLN02718 Probable galacturonosyltransferase
Probab=56.24 E-value=2.9e+02 Score=31.62 Aligned_cols=114 Identities=14% Similarity=0.172 Sum_probs=70.0
Q ss_pred ceEEEEecCChhHHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHh----hhhcceEeecCC-CCCccCC------c
Q psy7047 100 IAIVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKS----YQNQVHLIQQPN-QQDIAVP------P 168 (469)
Q Consensus 100 iPVlV~a~NRPdl~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~----y~~~i~~i~~~d-~~~i~~~------~ 168 (469)
.=|++++=|-..+.=++.|++.+......+.++|..|+-..+..+.... ++..|. +...+ ...++.. .
T Consensus 314 ~Hia~~sDNvlaasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~-V~~Iddf~~lp~~~~~~lk~ 392 (603)
T PLN02718 314 YHYVVFSDNVLACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQ-ILNIDDMNVLPADYNSLLMK 392 (603)
T ss_pred eeEEEEcCCceeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEE-EEecchhccccccchhhhhh
Confidence 3355555553337778899998733334678999999987665443322 222333 23322 1111100 0
Q ss_pred cccccccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHH
Q psy7047 169 KEKKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYF 216 (469)
Q Consensus 169 ~~k~~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf 216 (469)
.+.....|..++.|++.-|-.+|. ..+++|.|++|+++--|--+-+
T Consensus 393 l~s~~~~~~S~~~y~Rl~ipellp--~l~KvLYLD~DvVV~~DL~eL~ 438 (603)
T PLN02718 393 QNSHDPRYISALNHARFYLPDIFP--GLNKIVLFDHDVVVQRDLSRLW 438 (603)
T ss_pred ccccccccccHHHHHHHHHHHHhc--ccCEEEEEECCEEecCCHHHHh
Confidence 001113466788999999999998 7999999999999988865443
No 84
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=55.35 E-value=77 Score=31.20 Aligned_cols=116 Identities=9% Similarity=0.111 Sum_probs=63.1
Q ss_pred ceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcceEeecCCCCCccCCccccccccchh
Q psy7047 100 IAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFK 178 (469)
Q Consensus 100 iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~y~~ 178 (469)
+-|+|++.+ |+ +..+++.|...- .. ..++||.=++-. ..+.-+.++....+++-.-+....+...-.-+..-..
T Consensus 44 aDiIiLaVk-P~~i~~vl~~l~~~~-~~--~~~ivS~~agi~-~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~ 118 (245)
T TIGR00112 44 ADVVFLAVK-PQDLEEVLSELKSEK-GK--DKLLISIAAGVT-LEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANAN 118 (245)
T ss_pred CCEEEEEeC-HHHHHHHHHHHhhhc-cC--CCEEEEecCCCC-HHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCC
Confidence 567888887 98 999999998632 11 248898876643 2222222332112333221111111111100100012
Q ss_pred hhhhHHHHHHHhhhhccccEEEEE-ccCcc-------cCchHHHHHHhhhhh
Q psy7047 179 IARHYGWALNQMFYEFNFSTAIVI-EDDLD-------IAPDFFEYFLGTYPL 222 (469)
Q Consensus 179 Ia~Hyk~aLs~vF~~~~~~~vIIL-EDDLv-------vSPDFf~Yf~~~L~l 222 (469)
+..+.+..+.++|+ ..+.++.+ |+++. -+|-||.+|-+++-.
T Consensus 119 ~~~~~~~~v~~lf~--~~G~~~~v~E~~~~~~talsgsgPA~~~~~~~al~~ 168 (245)
T TIGR00112 119 VSEEDRALVLALFK--AVGEVVELPEALMDAVTALSGSGPAYVFLFIEALAD 168 (245)
T ss_pred CCHHHHHHHHHHHH--hCCCEEEECHHHcchHHhhccCcHHHHHHHHHHHHH
Confidence 44456678899999 77777766 55554 368888777766543
No 85
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=53.81 E-value=57 Score=26.57 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=28.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy7047 37 IGDVDKALSDLSADINSELEIHNLMMESVQQSIVQ 71 (469)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (469)
...+..++..+++.++..-+.++.|...+..+...
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~ 60 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRH 60 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 34677888888888888888888888888887653
No 86
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=52.32 E-value=76 Score=29.85 Aligned_cols=53 Identities=9% Similarity=0.071 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCCcccCCChhhHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy7047 7 ILICALSLSLWVFVSHYVFLGRSNNEFSNNIGDVDKALSDLSADINSELEIHNLMMESVQQSIV 70 (469)
Q Consensus 7 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (469)
++|.++.|++-++++.-++|+. ++..+..=+..++.+++.-...++...++..
T Consensus 7 ~fwq~I~FlIll~ll~kfawkP-----------I~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~ 59 (154)
T PRK06568 7 SFWLAVSFVIFVYLIYRPAKKA-----------ILNSLDAKILEVQEKVLKAEKLKEDAALLFE 59 (154)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555666555653 3444444445555555444444444444433
No 87
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=51.05 E-value=1.6e+02 Score=29.66 Aligned_cols=116 Identities=13% Similarity=0.217 Sum_probs=65.5
Q ss_pred eEEEEecCChhHHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHH-Hhh---hhcceE--eecCCC-CCccCCc-----
Q psy7047 101 AIVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVI-KSY---QNQVHL--IQQPNQ-QDIAVPP----- 168 (469)
Q Consensus 101 PVlV~a~NRPdl~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv-~~y---~~~i~~--i~~~d~-~~i~~~~----- 168 (469)
+|++.+=|.-...-++.|++.+.+....+.+.|..|+-..+..+.. ... +.++.+ +....+ ......+
T Consensus 2 hiv~~~Dn~l~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 81 (257)
T cd06429 2 HVVIFSDNRLAAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQLE 81 (257)
T ss_pred CEEEEecchhHHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhhh
Confidence 4555555666644555565555443366789999999775432222 221 223332 111111 0111000
Q ss_pred -------cccccccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHh
Q psy7047 169 -------KEKKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLG 218 (469)
Q Consensus 169 -------~~k~~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~ 218 (469)
....-..+...+.+++.-|-.+|. ..+++|.|+.|+++--|.=+.++-
T Consensus 82 ~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp--~~~kvlYLD~Dviv~~dl~eL~~~ 136 (257)
T cd06429 82 SEADTSNLKQRKPEYISLLNFARFYLPELFP--KLEKVIYLDDDVVVQKDLTELWNT 136 (257)
T ss_pred ccccccccccCCccccCHHHHHHHHHHHHhh--hhCeEEEEeCCEEEeCCHHHHhhC
Confidence 000012345678888888988887 689999999999998887554443
No 88
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=48.42 E-value=19 Score=32.79 Aligned_cols=103 Identities=18% Similarity=0.185 Sum_probs=57.9
Q ss_pred EEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecCCCC-CCCcccC-CCCC-------------cceeecCCCCcccc
Q psy7047 199 AIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWNDN-GKPTLID-TSSS-------------DLLYRTDFFPGLGW 263 (469)
Q Consensus 199 vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAwNdn-G~~~~vd-~~d~-------------~~lyRsdffPglGW 263 (469)
|+++++|..+.||+|..+ .+.++ ||.+..|.+-.-. +...... ..+. ..+....+++|=|=
T Consensus 2 v~~~DaDt~~~~d~l~~~---~~~~~-~~~~~~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 77 (193)
T PF13632_consen 2 VLFLDADTRLPPDFLERL---VAALE-DPKVDAVQGPIIFRNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGM 77 (193)
T ss_pred EEEEcCCCCCChHHHHHH---HHHHh-CCCceEEEccEEecCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCcce
Confidence 789999999999998666 44566 6778777654321 1111000 0000 12334456778888
Q ss_pred ccchhhHHHhhcCCC--CC-CccchhccccccCCCceeeeCccccc
Q psy7047 264 MLTKDLWDEISVKWP--RS-YWDDWIRQPEQRKDRACIRPEISRTR 306 (469)
Q Consensus 264 mtwrr~W~El~pkWP--~~-~WD~w~r~~~~r~gr~cI~PeisRt~ 306 (469)
+..+++.+++. .|+ .. .-|..+-....++|-.+.+..-.+++
T Consensus 78 ~~r~~~l~~vg-~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~ 122 (193)
T PF13632_consen 78 LFRREALREVG-GFDDPFSIGEDMDLGFRLRRAGYRIVYVPDAIVY 122 (193)
T ss_pred eeeHHHHHHhC-cccccccccchHHHHHHHHHCCCEEEEeccccee
Confidence 88888888874 233 22 23333333345677555443333554
No 89
>KOG3738|consensus
Probab=47.27 E-value=35 Score=37.14 Aligned_cols=180 Identities=13% Similarity=0.166 Sum_probs=100.3
Q ss_pred CcceEEEEecCChh--HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHH--HHhhhhcceEeecCCCCCccCCcccccc
Q psy7047 98 DAIAIVVIACNRVT--VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNV--IKSYQNQVHLIQQPNQQDIAVPPKEKKF 173 (469)
Q Consensus 98 ~~iPVlV~a~NRPd--l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~v--v~~y~~~i~~i~~~d~~~i~~~~~~k~~ 173 (469)
+.+.|+|---|-.. |.||+-|+++..|..--.+||.-.|++. ++..- .... .+++.... ++.
T Consensus 124 p~TsviITfHNEARS~LLRTv~SvlnrsP~~li~EiILVDD~S~-Dped~~~L~ri-~kvr~LRN-----------~~R- 189 (559)
T KOG3738|consen 124 PPTSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQ-DPEDGKLLKRI-PKVRVLRN-----------NER- 189 (559)
T ss_pred CCceEEEEeccHHHHHHHHHHHHHHcCChHHhhheeEEecCCCC-ChHHHHHHhhh-heeeeecc-----------cch-
Confidence 45556555556553 9999999999988665557888888876 33222 2221 12222221 000
Q ss_pred ccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCee------EEecCCCC---------
Q psy7047 174 KGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLW------CVSAWNDN--------- 238 (469)
Q Consensus 174 ~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~------~ISAwNdn--------- 238 (469)
.++-+.-..|- +......+-+|+--|++.-+.| +-+|+..+.|.+.. -|+-=|.+
T Consensus 190 ---eGLirSRvrGA----dvA~a~vltFLDSHcEvN~~WL---ePLL~Rvaed~trvVsPiiDvIn~dnf~Y~~asadLr 259 (559)
T KOG3738|consen 190 ---EGLIRSRVRGA----DVAQATVLTFLDSHCEVNEGWL---EPLLERVAEDTTRVVSPIIDVINLDNFSYVGASADLR 259 (559)
T ss_pred ---hhhhhhhcccc----ccccceEEEEEecceeecchhh---HHHHHHHhhcccceeecccccccccccccccchhhhc
Confidence 11222111111 1124667788888999988877 45666666665431 22222221
Q ss_pred -CCCcc-------------cCCCCCcceeecCCCCccccccchhhHHHhhc------CCCCCC----ccchhccccccCC
Q psy7047 239 -GKPTL-------------IDTSSSDLLYRTDFFPGLGWMLTKDLWDEISV------KWPRSY----WDDWIRQPEQRKD 294 (469)
Q Consensus 239 -G~~~~-------------vd~~d~~~lyRsdffPglGWmtwrr~W~El~p------kWP~~~----WD~w~r~~~~r~g 294 (469)
|+.+. -...||..=+||-.+.|-=.|+.|.-+++|.. -|-... ...||= -|
T Consensus 260 GGFDWsLhF~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW~C-----GG 334 (559)
T KOG3738|consen 260 GGFDWSLHFKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVWQC-----GG 334 (559)
T ss_pred CCcceEEEEEehhcCHHHHhhccCCCCcccCccccceeEEecHHHHHHhcccCccccccCCcceEEEEEEEee-----CC
Confidence 22111 01246677788888887778888776676532 465542 223332 35
Q ss_pred CceeeeCcccccc
Q psy7047 295 RACIRPEISRTRT 307 (469)
Q Consensus 295 r~cI~PeisRt~~ 307 (469)
..=|+|. ||+-|
T Consensus 335 slEIvPC-SRVGH 346 (559)
T KOG3738|consen 335 SLEIVPC-SRVGH 346 (559)
T ss_pred eeEEEec-cchhh
Confidence 5778886 67775
No 90
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=47.03 E-value=1.3e+02 Score=28.21 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=45.9
Q ss_pred HHHHHhhhhc-cccEEEEEccCcccCchHH-HHHHhhhhhhcCCCCeeEEecCCCCCCCccc-CCCCCcceeecC----C
Q psy7047 185 WALNQMFYEF-NFSTAIVIEDDLDIAPDFF-EYFLGTYPLLISDPTLWCVSAWNDNGKPTLI-DTSSSDLLYRTD----F 257 (469)
Q Consensus 185 ~aLs~vF~~~-~~~~vIILEDDLvvSPDFf-~Yf~~~L~ly~~D~sI~~ISAwNdnG~~~~v-d~~d~~~lyRsd----f 257 (469)
.++.|+.+.. +++.++.++||+.+-++=| +++.+. ..-.....++|-...+.......- .-.-+...|..+ |
T Consensus 69 ~~~~w~~~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~-~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y 147 (195)
T PF01762_consen 69 AGLKWASKHCPNAKYVLKVDDDVFVNPDRLVSFLKSL-KQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPY 147 (195)
T ss_pred HHHHHHHhhCCchhheeecCcEEEEehHHhhhhhhhc-ccCccccccccccccCCccccccccCceeeeeecccccCCCc
Confidence 3666665544 5899999999999977543 222222 112334445544443322111100 000122233333 4
Q ss_pred CCccccccchhhHHHh
Q psy7047 258 FPGLGWMLTKDLWDEI 273 (469)
Q Consensus 258 fPglGWmtwrr~W~El 273 (469)
..|-|+++++++=+.+
T Consensus 148 ~~G~~yvls~~~v~~i 163 (195)
T PF01762_consen 148 CSGGGYVLSSDVVKRI 163 (195)
T ss_pred CCCCeEEecHHHHHHH
Confidence 4577888888877654
No 91
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=45.21 E-value=86 Score=27.50 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=26.7
Q ss_pred ChhhHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy7047 36 NIGDVDKALSDLSADINSELEIHNLMMESVQQSI 69 (469)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (469)
.++.|..+....++.++.+...++.|..++.+..
T Consensus 26 ~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r 59 (110)
T PF10828_consen 26 RIDRLRAENKAQAQTIQQQEDANQELKAQLQQNR 59 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888888888888888887777654
No 92
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=42.93 E-value=2e+02 Score=27.56 Aligned_cols=25 Identities=8% Similarity=0.074 Sum_probs=15.5
Q ss_pred ccccCCccCCCC---CcceEEEEecCCh
Q psy7047 86 VVINNEKFHYSK---DAIAIVVIACNRV 110 (469)
Q Consensus 86 ~~~~~~~~~~~~---~~iPVlV~a~NRP 110 (469)
+-+++.++.|.. .-+||=+++|+=-
T Consensus 97 Pffp~f~ynPkD~RfIGTPvD~iVFdGL 124 (175)
T COG4741 97 PFFPEFKYNPKDARFIGTPVDFIVFDGL 124 (175)
T ss_pred ccccCCCcCCccceeeCCCceEEEEcCC
Confidence 344555555553 3788888888743
No 93
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=41.45 E-value=87 Score=28.41 Aligned_cols=24 Identities=4% Similarity=-0.011 Sum_probs=15.2
Q ss_pred cchhhHHHHHHHHHHHHHHHhhCC
Q psy7047 5 HYILICALSLSLWVFVSHYVFLGR 28 (469)
Q Consensus 5 ~~~~~~~~~~~~w~~~~~~~~~~~ 28 (469)
..++|.++.|++-.++++.+++.+
T Consensus 5 ~~~~~~~i~Flil~~il~~~~~~p 28 (156)
T PRK05759 5 GTLIGQLIAFLILVWFIMKFVWPP 28 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456666666666666776665554
No 94
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=41.27 E-value=2.2e+02 Score=26.19 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=54.6
Q ss_pred CCCcceEEEEecCChhHHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhh---hhcceEeecCCCCCccCCccccc
Q psy7047 96 SKDAIAIVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSY---QNQVHLIQQPNQQDIAVPPKEKK 172 (469)
Q Consensus 96 ~~~~iPVlV~a~NRPdl~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y---~~~i~~i~~~d~~~i~~~~~~k~ 172 (469)
.+..+|| .+||=+..+|++|.+.. .+ .++|...-..+...+.+... +..+..+.+...
T Consensus 20 pK~ll~v----~g~pli~~~l~~l~~~g--~~--~i~vv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~----------- 80 (217)
T cd04181 20 PKPLLPI----AGKPILEYIIERLARAG--ID--EIILVVGYLGEQIEEYFGDGSKFGVNIEYVVQEEP----------- 80 (217)
T ss_pred CccccEE----CCeeHHHHHHHHHHHCC--CC--EEEEEeccCHHHHHHHHcChhhcCceEEEEeCCCC-----------
Confidence 3444555 78877999999999873 22 46666654334444444332 222333322110
Q ss_pred cccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHH
Q psy7047 173 FKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFL 217 (469)
Q Consensus 173 ~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~ 217 (469)
.+.+..+..|+..+ ..+.++|+-=|.+..+|+.+++.
T Consensus 81 ----~g~~~al~~~~~~~----~~~~~lv~~~D~~~~~~~~~~~~ 117 (217)
T cd04181 81 ----LGTAGAVRNAEDFL----GDDDFLVVNGDVLTDLDLSELLR 117 (217)
T ss_pred ----CccHHHHHHhhhhc----CCCCEEEEECCeecCcCHHHHHH
Confidence 12233233354443 46789999999999999877763
No 95
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=40.96 E-value=78 Score=27.51 Aligned_cols=21 Identities=5% Similarity=0.134 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHhhCC
Q psy7047 8 LICALSLSLWVFVSHYVFLGR 28 (469)
Q Consensus 8 ~~~~~~~~~w~~~~~~~~~~~ 28 (469)
+|-++.|++-.++++++++.+
T Consensus 3 ~~~~i~Flil~~~l~~~~~~p 23 (132)
T PF00430_consen 3 FWQLINFLILFFLLNKFLYKP 23 (132)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555665555544
No 96
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=40.85 E-value=1.5e+02 Score=27.45 Aligned_cols=23 Identities=0% Similarity=-0.029 Sum_probs=14.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhCC
Q psy7047 6 YILICALSLSLWVFVSHYVFLGR 28 (469)
Q Consensus 6 ~~~~~~~~~~~w~~~~~~~~~~~ 28 (469)
.++|.++.|++..+++..+++.+
T Consensus 10 ~~~~~~i~Flil~~ll~~~l~~p 32 (164)
T PRK14471 10 LFFWQTILFLILLLLLAKFAWKP 32 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 45566666666666666665654
No 97
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=40.80 E-value=1.1e+02 Score=25.70 Aligned_cols=16 Identities=13% Similarity=0.511 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHHHHHH
Q psy7047 7 ILICALSLSLWVFVSH 22 (469)
Q Consensus 7 ~~~~~~~~~~w~~~~~ 22 (469)
|++.+|+..+|...-|
T Consensus 11 ivf~ifVap~WL~lHY 26 (75)
T PF06667_consen 11 IVFMIFVAPIWLILHY 26 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455556654444
No 98
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=40.56 E-value=86 Score=29.38 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=14.6
Q ss_pred hHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy7047 39 DVDKALSDLSADINSELEIHNLMMESVQQSIVQ 71 (469)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (469)
.|.+-+.+..+++..-.+..+.+.+.+++++..
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEK 75 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 99
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=40.29 E-value=2.4e+02 Score=27.48 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=55.2
Q ss_pred EEEecCCh--h-HHHHHHHHHhcCCCCCCCcEEEEeCC-CChhHHHHHHhhhhcceEeecCCCCCccCCccccccccchh
Q psy7047 103 VVIACNRV--T-VSRCLDLLIKYRPSVEKFPIIVSQDC-NHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFK 178 (469)
Q Consensus 103 lV~a~NRP--d-l~RtLesLlk~rp~~~~~~LiVsqDG-~~~e~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~y~~ 178 (469)
+.++.+.. . +.-++.||+++.+. .+++|..++ -.++..+.+++.+.++..+...+ .+...........
T Consensus 4 ~t~~~~~~Y~~~a~vl~~SL~~~~~~---~~~~vl~~~~is~~~~~~L~~~~~~~~~v~~i~-----~~~~~~~~~~~~~ 75 (240)
T cd02537 4 VTLLTNDDYLPGALVLGYSLRKVGSS---YDLVVLVTPGVSEESREALEEVGWIVREVEPID-----PPDSANLLKRPRF 75 (240)
T ss_pred EEEecChhHHHHHHHHHHHHHhcCCC---CCEEEEECCCCCHHHHHHHHHcCCEEEecCccC-----CcchhhhccchHH
Confidence 44455544 3 77888999998542 478777764 44555666676654332222211 1110000000011
Q ss_pred hhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHH
Q psy7047 179 IARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFL 217 (469)
Q Consensus 179 Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~ 217 (469)
.+..+|. .+|+...++++|.|+=|+++-.+-=+.|+
T Consensus 76 ~~~~~kl---~~~~l~~~drvlylD~D~~v~~~i~~Lf~ 111 (240)
T cd02537 76 KDTYTKL---RLWNLTEYDKVVFLDADTLVLRNIDELFD 111 (240)
T ss_pred HHHhHHH---HhccccccceEEEEeCCeeEccCHHHHhC
Confidence 1111221 12333379999999999999877554444
No 100
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=39.09 E-value=2.1e+02 Score=29.83 Aligned_cols=117 Identities=17% Similarity=0.169 Sum_probs=62.6
Q ss_pred Chh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcceEeecCCCCCccCCccccccccchhhhhhHHH--
Q psy7047 109 RVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFKIARHYGW-- 185 (469)
Q Consensus 109 RPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~y~~Ia~Hyk~-- 185 (469)
-++ +.+||++++++=|.+ .||+|.-.+- ++. .+. | +++ +...|-+...+.....+-.+-..+.+....
T Consensus 18 ~~~~t~~~l~siR~~~P~A---~IILSTW~~~-d~~-~l~-~-D~v--v~s~DPG~~~~~~~~~~~~~~~NiNrQi~St~ 88 (311)
T PF07507_consen 18 EPDITKNCLASIRKHFPGA---EIILSTWEGQ-DIS-GLD-Y-DQV--VISDDPGSNVVLYKKDGKPGPNNINRQIVSTL 88 (311)
T ss_pred cchhHHHHHHHHHHhCCCC---EEEEECCCCC-Ccc-cCC-c-ceE--EecCCCCcceeeccCCCCCcccchhHHHHHHH
Confidence 456 999999999998987 5999874331 111 111 2 222 333333221110000001111234444433
Q ss_pred -HHHHhhhhccccEEEEEccCcc-cCchHHHHHHhhhhhhcC----CCCeeEEecCCCC
Q psy7047 186 -ALNQMFYEFNFSTAIVIEDDLD-IAPDFFEYFLGTYPLLIS----DPTLWCVSAWNDN 238 (469)
Q Consensus 186 -aLs~vF~~~~~~~vIILEDDLv-vSPDFf~Yf~~~L~ly~~----D~sI~~ISAwNdn 238 (469)
||..+ +-++|+=+=-|+. .+.+|++++++....=.. +++|.+.+-+.-+
T Consensus 89 aGL~~~----~~~Ya~KlRtD~~l~~~~~l~~~~~~~~~~~~~~~~~~RIv~~~~f~~~ 143 (311)
T PF07507_consen 89 AGLKAA----KTKYAMKLRTDNRLTGNNFLDLYEKYPDRESNYSFFNERIVTSSFFTRD 143 (311)
T ss_pred HHHHHh----CCceEEEEcccccccchHHHHHHHHhcccCcccccccCcEEeccccccC
Confidence 44443 4588888877765 588999999986552111 2566666665544
No 101
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=38.21 E-value=1.1e+02 Score=28.17 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=16.9
Q ss_pred CCCc-cchhhHHHHHHHHHHHHHHHhhCC
Q psy7047 1 MRKN-HYILICALSLSLWVFVSHYVFLGR 28 (469)
Q Consensus 1 ~~~~-~~~~~~~~~~~~w~~~~~~~~~~~ 28 (469)
|.-+ ..++|.++.|++-.+++..++|.+
T Consensus 1 M~~~~~~~~~~~inF~il~~iL~~f~~kp 29 (159)
T PRK13461 1 MEINIPTIIATIINFIILLLILKHFFFDK 29 (159)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4444 356666666666666776665653
No 102
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=38.20 E-value=1.4e+02 Score=26.19 Aligned_cols=34 Identities=3% Similarity=-0.042 Sum_probs=27.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy7047 37 IGDVDKALSDLSADINSELEIHNLMMESVQQSIV 70 (469)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (469)
..++.+++..+++.++.-..+++.|..+|+.++.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4468888888888888888889999998888875
No 103
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=38.03 E-value=79 Score=33.44 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=17.3
Q ss_pred cccEEEEEccCcccCchHHHHHHhhhh
Q psy7047 195 NFSTAIVIEDDLDIAPDFFEYFLGTYP 221 (469)
Q Consensus 195 ~~~~vIILEDDLvvSPDFf~Yf~~~L~ 221 (469)
+-...+|+|.|-.=.-++++=++..+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~q 220 (337)
T PRK14872 194 RLPTSYILEKDKYEKLHQLQELESSLQ 220 (337)
T ss_pred cccccccccccchhhhhhhhccccccc
Confidence 567778888887655556655554444
No 104
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=37.31 E-value=93 Score=29.13 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=13.9
Q ss_pred chhhHHHHHHHHHHHHHHHhhCC
Q psy7047 6 YILICALSLSLWVFVSHYVFLGR 28 (469)
Q Consensus 6 ~~~~~~~~~~~w~~~~~~~~~~~ 28 (469)
.++|.++.|++-.+++..++|.+
T Consensus 18 ~~~~~~i~Flil~~iL~~~~~kp 40 (173)
T PRK13460 18 LVVWTLVTFLVVVLVLKKFAWDV 40 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 45565666666666676666654
No 105
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=37.10 E-value=66 Score=26.86 Aligned_cols=15 Identities=7% Similarity=0.082 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy7047 10 CALSLSLWVFVSHYV 24 (469)
Q Consensus 10 ~~~~~~~w~~~~~~~ 24 (469)
-+++|+++++.+.++
T Consensus 9 Pliif~ifVap~wl~ 23 (75)
T TIGR02976 9 PLIIFVIFVAPLWLI 23 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555544333
No 106
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=36.86 E-value=99 Score=28.99 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhCC
Q psy7047 7 ILICALSLSLWVFVSHYVFLGR 28 (469)
Q Consensus 7 ~~~~~~~~~~w~~~~~~~~~~~ 28 (469)
++|-++.|++..+++..++|..
T Consensus 25 ~~~~~inflil~~lL~~fl~kP 46 (167)
T PRK08475 25 IIERTINFLIFVGILWYFAAKP 46 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666776666654
No 107
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=36.08 E-value=63 Score=36.14 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=32.5
Q ss_pred cccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEecC
Q psy7047 195 NFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAW 235 (469)
Q Consensus 195 ~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISAw 235 (469)
.++.++.++-|..+.||=+.. ++..+++|++|.+++|-
T Consensus 201 ~~~~il~~DaDt~~~p~~~~~---lv~~m~~d~~i~gvCG~ 238 (527)
T PF03142_consen 201 FYEYILMVDADTKFDPDSVNR---LVDAMERDPKIGGVCGE 238 (527)
T ss_pred ceEEEEEecCCceEcHHHHHH---HHHHHcCCCCeEEEece
Confidence 479999999999999998854 45556799999999985
No 108
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=36.06 E-value=4e+02 Score=28.01 Aligned_cols=158 Identities=13% Similarity=0.196 Sum_probs=85.3
Q ss_pred ceEEEEecCCh--h-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhH----HHHHHhhhhcceEeecCCCCCccCCc-ccc
Q psy7047 100 IAIVVIACNRV--T-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEAT----TNVIKSYQNQVHLIQQPNQQDIAVPP-KEK 171 (469)
Q Consensus 100 iPVlV~a~NRP--d-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~----~~vv~~y~~~i~~i~~~d~~~i~~~~-~~k 171 (469)
+||+ +|+++= . +.-++.||+.+... -...++|..||-.+|- .+.++.|+..+. +...|.+....-+ ..+
T Consensus 3 ~~Iv-~a~D~nY~~~~gvsI~SiL~~n~~-~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~-~~~id~~~~~~~~~~~~ 79 (325)
T COG1442 3 IPIA-FAFDKNYLIPAGVSIYSLLEHNRK-IFYKFHILVDGLNEEDKKKLNETAEPFKSFIV-LEVIDIEPFLDYPPFTK 79 (325)
T ss_pred ccEE-EEcccccchhHHHHHHHHHHhCcc-ccEEEEEEecCCCHHHHHHHHHHHHhhcccee-eEEEechhhhccccccc
Confidence 4554 454444 4 77899999998543 2568999999988764 445666664432 2222322111111 112
Q ss_pred ccccchhhhhhHHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEe-cCCCCCCCcccCCCCCc
Q psy7047 172 KFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVS-AWNDNGKPTLIDTSSSD 250 (469)
Q Consensus 172 ~~~~y~~Ia~Hyk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~IS-AwNdnG~~~~vd~~d~~ 250 (469)
++ ..+-=++.-|..+|. +++++|-++=|.++--|+ +++..+-.++.-+++|= ...+...+... .....
T Consensus 80 ~~----s~~v~~R~fiadlf~--~~dK~lylD~Dvi~~g~l----~~lf~~~~~~~~~aaV~D~~~~~~~~~~~-~~~~~ 148 (325)
T COG1442 80 RF----SKMVLVRYFLADLFP--QYDKMLYLDVDVIFCGDL----SELFFIDLEEYYLAAVRDVFSHYMKEGAL-RLEKG 148 (325)
T ss_pred ch----HHHHHHHHHHHHhcc--ccCeEEEEecCEEEcCcH----HHHHhcCCCcceEEEEeehhhhhhhhhhh-Hhhhc
Confidence 22 223334455666676 789999999999998877 44444444455554432 22222111000 00000
Q ss_pred ceeecCCCCccccccchhhHHH
Q psy7047 251 LLYRTDFFPGLGWMLTKDLWDE 272 (469)
Q Consensus 251 ~lyRsdffPglGWmtwrr~W~E 272 (469)
.+ ...+|..+=+..-.+.|.+
T Consensus 149 ~~-~~~yFNaG~llinl~~W~~ 169 (325)
T COG1442 149 DL-EGSYFNAGVLLINLKLWRE 169 (325)
T ss_pred cc-ccccCccceeeehHHHHHH
Confidence 11 1224555667888899973
No 109
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=34.92 E-value=1e+02 Score=28.81 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=12.6
Q ss_pred chhhHHHHHHHHHHHHHHHhhCC
Q psy7047 6 YILICALSLSLWVFVSHYVFLGR 28 (469)
Q Consensus 6 ~~~~~~~~~~~w~~~~~~~~~~~ 28 (469)
.++|.++.|++-.+++..+++.+
T Consensus 20 ~~~~~~i~Flil~~lL~~~l~kp 42 (175)
T PRK14472 20 LIFWTAVTFVIVLLILKKIAWGP 42 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 34555555555555665555543
No 110
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=34.42 E-value=2.1e+02 Score=27.06 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=13.5
Q ss_pred chhhHHHHHHHHHHHHHHHhhCC
Q psy7047 6 YILICALSLSLWVFVSHYVFLGR 28 (469)
Q Consensus 6 ~~~~~~~~~~~w~~~~~~~~~~~ 28 (469)
.++|.++.|++..++...++|.+
T Consensus 12 qifw~iI~FlILy~ll~kf~~pp 34 (155)
T PRK06569 12 QIFWLIVTFGLLYIFVYKFITPK 34 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 35566666666666665555554
No 111
>PRK15396 murein lipoprotein; Provisional
Probab=34.22 E-value=2.8e+02 Score=23.37 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=24.7
Q ss_pred ChhhHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy7047 36 NIGDVDKALSDLSADINSELEIHNLMMESVQQSIVQ 71 (469)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (469)
..+.|..+++.|...+..-....+.++..++.-+..
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~e 61 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDD 61 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677788888777776666677777766665443
No 112
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.21 E-value=79 Score=25.07 Aligned_cols=30 Identities=10% Similarity=0.300 Sum_probs=25.7
Q ss_pred hHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy7047 39 DVDKALSDLSADINSELEIHNLMMESVQQS 68 (469)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (469)
.+..++..|+..++..-+.++.+..+++.+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888888988888888888888888887
No 113
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=33.82 E-value=11 Score=39.69 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=16.0
Q ss_pred cccEEEEEccCcccCch
Q psy7047 195 NFSTAIVIEDDLDIAPD 211 (469)
Q Consensus 195 ~~~~vIILEDDLvvSPD 211 (469)
..+++|-++|||.++.|
T Consensus 93 ~~~yivsiDDD~~Pa~d 109 (346)
T PLN03180 93 KKKYIFTIDDDCFVAKD 109 (346)
T ss_pred cceEEEEECCCCCCCCC
Confidence 68999999999999998
No 114
>PRK09039 hypothetical protein; Validated
Probab=33.08 E-value=85 Score=32.97 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCCcccCCChhhHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy7047 8 LICALSLSLWVFVSHYVFLGRSNNEFSNNIGDVDKALSDLSADINSELEIHNLMMESVQQSIVQ 71 (469)
Q Consensus 8 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (469)
|+.++.|++=+++.-.+|+..--.......+.|..++..|.+.+..+......+.+.+.++..+
T Consensus 26 ll~~~~f~l~~f~~~q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~ 89 (343)
T PRK09039 26 LLLVIMFLLTVFVVAQFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRAS 89 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344556666666655556653444455566677777777777766666666666666666554
No 115
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.94 E-value=2e+02 Score=22.82 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=37.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q psy7047 38 GDVDKALSDLSADINSELEIHNLMMESVQQSIVQKKRALEKAEQE 82 (469)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (469)
++|.+.+.+++..+..--..+++|.+.+++++.+-|.-+.-||.-
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888877889999999999999988888888854
No 116
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=32.32 E-value=2.4e+02 Score=28.31 Aligned_cols=114 Identities=11% Similarity=0.162 Sum_probs=58.5
Q ss_pred ceEEEEecCChh-HHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHh-hhhcceEeecCCCCCccCCccccccccch
Q psy7047 100 IAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKS-YQNQVHLIQQPNQQDIAVPPKEKKFKGYF 177 (469)
Q Consensus 100 iPVlV~a~NRPd-l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~-y~~~i~~i~~~d~~~i~~~~~~k~~~~y~ 177 (469)
.-|+|++.. |+ +..+++.|...-. . -.|+||.=.+-. .+.+++ +.....+++-.-+-...+...-.-+..-.
T Consensus 64 aDiIiLavk-P~~~~~vl~~l~~~~~-~--~~lvISi~AGi~--i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~ 137 (272)
T PRK12491 64 ADILILSIK-PDLYSSVINQIKDQIK-N--DVIVVTIAAGKS--IKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE 137 (272)
T ss_pred CCEEEEEeC-hHHHHHHHHHHHHhhc-C--CcEEEEeCCCCc--HHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence 345555555 98 9999998876421 1 148888866532 222222 22211222221111111111110010011
Q ss_pred hhhhhHHHHHHHhhhhccccEEEEEccC-cc-------cCchHHHHHHhhhh
Q psy7047 178 KIARHYGWALNQMFYEFNFSTAIVIEDD-LD-------IAPDFFEYFLGTYP 221 (469)
Q Consensus 178 ~Ia~Hyk~aLs~vF~~~~~~~vIILEDD-Lv-------vSPDFf~Yf~~~L~ 221 (469)
....+-+.-+..+|+ ..++++.++++ ++ .+|-|+-||-+++-
T Consensus 138 ~~~~~~~~~v~~lf~--~~G~~~~~~E~~~d~~talsgsgPAf~~~~~eal~ 187 (272)
T PRK12491 138 MVTEKDIKEVLNIFN--IFGQTEVVNEKLMDVVTSISGSSPAYVYMFIEAMA 187 (272)
T ss_pred CCCHHHHHHHHHHHH--cCCCEEEEcHHHhhhHHHhccCcHHHHHHHHHHHH
Confidence 234444667889999 77777887544 43 36888777766654
No 117
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=32.05 E-value=60 Score=29.14 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=31.9
Q ss_pred EEEecCChhHHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhh
Q psy7047 103 VVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQN 151 (469)
Q Consensus 103 lV~a~NRPdl~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~ 151 (469)
-..++-||.+...|+.|.+. +.|+|+.-|...-+..+++....
T Consensus 32 ~~~v~~RP~l~~FL~~l~~~------~ev~i~T~~~~~ya~~v~~~ldp 74 (159)
T PF03031_consen 32 GYYVKLRPGLDEFLEELSKH------YEVVIWTSASEEYAEPVLDALDP 74 (159)
T ss_dssp EEEEEE-TTHHHHHHHHHHH------CEEEEE-SS-HHHHHHHHHHHTT
T ss_pred ceeEeeCchHHHHHHHHHHh------ceEEEEEeehhhhhhHHHHhhhh
Confidence 45667799999999999666 57999999987777788877764
No 118
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=30.96 E-value=2.6e+02 Score=26.54 Aligned_cols=20 Identities=25% Similarity=0.158 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHHHHhhC
Q psy7047 8 LICALSLSLWVFVSHYVFLG 27 (469)
Q Consensus 8 ~~~~~~~~~w~~~~~~~~~~ 27 (469)
+|.++.|++-.+++..++|.
T Consensus 35 ~~~lI~F~iL~~ll~k~l~~ 54 (181)
T PRK13454 35 FWLLVTLVAIYFVLTRVALP 54 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344333344333343
No 119
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=30.85 E-value=2.4e+02 Score=27.49 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=12.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhCC
Q psy7047 6 YILICALSLSLWVFVSHYVFLGR 28 (469)
Q Consensus 6 ~~~~~~~~~~~w~~~~~~~~~~~ 28 (469)
.++|.++.|++..+++..++|.+
T Consensus 55 ~l~w~~I~FliL~~lL~k~~~~p 77 (204)
T PRK09174 55 QLLWLAITFGLFYLFMSRVILPR 77 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666655655554543
No 120
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=30.51 E-value=1.7e+02 Score=27.54 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHHhhCC
Q psy7047 8 LICALSLSLWVFVSHYVFLGR 28 (469)
Q Consensus 8 ~~~~~~~~~w~~~~~~~~~~~ 28 (469)
+|.++.|++..+++++++|..
T Consensus 30 ~~~~inflil~~iL~~f~~~~ 50 (184)
T PRK13455 30 FVVTLAFLLFIGILVYFKVPG 50 (184)
T ss_pred HHHHHHHHHHHHHHHHHhccH
Confidence 345566666666666554554
No 121
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=30.43 E-value=2.2e+02 Score=26.95 Aligned_cols=108 Identities=16% Similarity=0.077 Sum_probs=60.7
Q ss_pred cCC-hhHHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhh---cceEeecCCCCCccCCccccccccchhhhhh
Q psy7047 107 CNR-VTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQN---QVHLIQQPNQQDIAVPPKEKKFKGYFKIARH 182 (469)
Q Consensus 107 ~NR-Pdl~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~---~i~~i~~~d~~~i~~~~~~k~~~~y~~Ia~H 182 (469)
.+| |=+..+|+.|.++.... -++|......+...+.++.... ++.++.++.. .+.+..
T Consensus 28 ~g~~pli~~~l~~l~~~g~~~---ii~V~~~~~~~~i~~~~~~~~~~~~~i~~i~~~~~---------------~Gta~a 89 (248)
T PF00483_consen 28 GGKYPLIDYVLENLANAGIKE---IIVVVNGYKEEQIEEHLGSGYKFGVKIEYIVQPEP---------------LGTAGA 89 (248)
T ss_dssp TTEEEHHHHHHHHHHHTTCSE---EEEEEETTTHHHHHHHHTTSGGGTEEEEEEEESSS---------------SCHHHH
T ss_pred cCCCcchhhhhhhhcccCCce---EEEEEeecccccccccccccccccccceeeecccc---------------cchhHH
Confidence 455 77999999999974321 2566654444445555555431 3555555432 123442
Q ss_pred HHHHHHHhhhhccccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEe
Q psy7047 183 YGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVS 233 (469)
Q Consensus 183 yk~aLs~vF~~~~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~IS 233 (469)
++.|...+-+....+.++|+=+|.+...||.+++......-... .+.+..
T Consensus 90 l~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~-~~~~~~ 139 (248)
T PF00483_consen 90 LLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADG-TVTLLV 139 (248)
T ss_dssp HHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCE-SEEEEE
T ss_pred HHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhcccccc-cccccc
Confidence 33333333321113459999999999998877776655543332 444443
No 122
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.32 E-value=63 Score=30.60 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=18.7
Q ss_pred CCCccchhhHHH--HHHHHHHHHHHHhhCCCCcccCCC
Q psy7047 1 MRKNHYILICAL--SLSLWVFVSHYVFLGRSNNEFSNN 36 (469)
Q Consensus 1 ~~~~~~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~ 36 (469)
|||+.+++++++ +|++-.++..++|+.. .++.+.+
T Consensus 1 ~Rkk~~~~i~ii~viflai~~s~~~~~~~s-~~P~~~~ 37 (161)
T COG5353 1 MRKKHLIIIIIILVIFLAIILSIALFFWKS-MKPYHEA 37 (161)
T ss_pred CCceEeeeehhHHHHHHHHHHHHHHHHhHh-cCccchh
Confidence 899887776663 3333333444554543 3344433
No 123
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=30.14 E-value=4.5e+02 Score=26.09 Aligned_cols=95 Identities=15% Similarity=0.087 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCChhH----HHHHHhhhhcceEeecCCCCCccCCccccccccchhhhhhHHHHH
Q psy7047 112 VSRCLDLLIKYRPSVEKFPIIVSQDCNHEAT----TNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFKIARHYGWAL 187 (469)
Q Consensus 112 l~RtLesLlk~rp~~~~~~LiVsqDG~~~e~----~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~y~~Ia~Hyk~aL 187 (469)
+.-+|.||+.+.. ..+.++|..||-.++- .+.++.|+.++..+. .++......... .. ..+...++..+
T Consensus 16 ~~v~l~Sll~nn~--~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~-i~~~~~~~~~~~---~~-~~~~~y~rL~~ 88 (248)
T cd06432 16 LRIMMLSVMKNTK--SPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVT-YKWPRWLHKQTE---KQ-RIIWGYKILFL 88 (248)
T ss_pred HHHHHHHHHHcCC--CCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEE-ecChhhhhcccc---cc-hhHHHHHHHHH
Confidence 8899999999852 4678999999987654 344555655544332 222110000000 00 01111222334
Q ss_pred HHhhhhccccEEEEEccCcccCchHHH
Q psy7047 188 NQMFYEFNFSTAIVIEDDLDIAPDFFE 214 (469)
Q Consensus 188 s~vF~~~~~~~vIILEDDLvvSPDFf~ 214 (469)
..++. ...++||.|+=|+++--|-=+
T Consensus 89 ~~lLP-~~vdkvLYLD~Dilv~~dL~e 114 (248)
T cd06432 89 DVLFP-LNVDKVIFVDADQIVRTDLKE 114 (248)
T ss_pred HHhhh-hccCEEEEEcCCceecccHHH
Confidence 44443 148999999999998776643
No 124
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=29.95 E-value=1.4e+02 Score=27.94 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhC
Q psy7047 7 ILICALSLSLWVFVSHYVFLG 27 (469)
Q Consensus 7 ~~~~~~~~~~w~~~~~~~~~~ 27 (469)
++|.++.|++-.+++..+++.
T Consensus 21 ~~~~iInFliL~~lL~~~l~~ 41 (173)
T PRK13453 21 VIVTVLTFIVLLALLKKFAWG 41 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555454
No 125
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=28.43 E-value=1.2e+02 Score=25.55 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=22.3
Q ss_pred hHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy7047 39 DVDKALSDLSADINSELEIHNLMMESVQQSIVQ 71 (469)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (469)
.+..++.+++.+.....+.+..|+-.+..+...
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~ 71 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIATLSSP 71 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 566777777777777666677666666655543
No 126
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=27.40 E-value=1.8e+02 Score=26.90 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=14.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhCC
Q psy7047 6 YILICALSLSLWVFVSHYVFLGR 28 (469)
Q Consensus 6 ~~~~~~~~~~~w~~~~~~~~~~~ 28 (469)
+++|-++.|++..+++..|+|.+
T Consensus 10 ~~~~~~inflil~~lL~~fl~kp 32 (164)
T PRK14473 10 LLIAQLINFLLLIFLLRTFLYRP 32 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666776666664
No 127
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=26.91 E-value=3.5e+02 Score=25.23 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhCC
Q psy7047 7 ILICALSLSLWVFVSHYVFLGR 28 (469)
Q Consensus 7 ~~~~~~~~~~w~~~~~~~~~~~ 28 (469)
++|.++.|++-+++++.++|.+
T Consensus 9 ~~~~~i~F~ill~ll~~~~~~p 30 (161)
T COG0711 9 ILWQLIAFVILLWLLKKFVWKP 30 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 5666666666666776676743
No 128
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=25.93 E-value=3.7e+02 Score=24.64 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHHHHHHHHhh
Q psy7047 7 ILICALSLSLWVFVSHYVFL 26 (469)
Q Consensus 7 ~~~~~~~~~~w~~~~~~~~~ 26 (469)
++|.++.|++-.++++++++
T Consensus 4 ~~w~~i~f~i~l~~l~~~~~ 23 (159)
T PRK09173 4 TFWAFVGLVLFLALVVYLKV 23 (159)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34444445554445544434
No 129
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=25.51 E-value=4.6e+02 Score=23.01 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=61.2
Q ss_pred cCChhHHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcceEeecCCCCCccCCccccccccchhhhhhHHHH
Q psy7047 107 CNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFKIARHYGWA 186 (469)
Q Consensus 107 ~NRPdl~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~y~~Ia~Hyk~a 186 (469)
..+|-+.++++.+.+.... +|+|..-. ++..+.+..++ +..+..+... .+.......|
T Consensus 22 ~g~~li~~~l~~l~~~~~~----~Ivvv~~~--~~~~~~~~~~~--~~~v~~~~~~--------------~G~~~sl~~a 79 (160)
T PF12804_consen 22 GGKPLIERVLEALREAGVD----DIVVVTGE--EEIYEYLERYG--IKVVVDPEPG--------------QGPLASLLAA 79 (160)
T ss_dssp TTEEHHHHHHHHHHHHTES----EEEEEEST--HHHHHHHTTTT--SEEEE-STSS--------------CSHHHHHHHH
T ss_pred CCccHHHHHHHHhhccCCc----eEEEecCh--HHHHHHHhccC--ceEEEecccc--------------CChHHHHHHH
Confidence 8888899999999998422 57777655 34444444443 4445543210 1334333335
Q ss_pred HHHhhhhccccEEEEEccCc-ccCchHHHHHHhhhhhhcCCCCeeEEe
Q psy7047 187 LNQMFYEFNFSTAIVIEDDL-DIAPDFFEYFLGTYPLLISDPTLWCVS 233 (469)
Q Consensus 187 Ls~vF~~~~~~~vIILEDDL-vvSPDFf~Yf~~~L~ly~~D~sI~~IS 233 (469)
+.+ .. ..+.++|+-=|+ .++|+.+..+-+.+. ++...+.+.+
T Consensus 80 ~~~-~~--~~~~vlv~~~D~p~~~~~~l~~l~~~~~--~~~~~i~~~~ 122 (160)
T PF12804_consen 80 LSQ-LP--SSEPVLVLPCDQPFLSPELLRRLLEALE--KSPADIVVPV 122 (160)
T ss_dssp HHT-ST--TSSEEEEEETTETTS-HHHHHHHHHHHH--HTTTSEEEEE
T ss_pred HHh-cc--cCCCcEEEeCCccccCHHHHHHHHHHHh--ccCCcEEEEE
Confidence 544 21 689999999999 579999988777775 3345565544
No 130
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=23.60 E-value=6.4e+02 Score=23.96 Aligned_cols=91 Identities=12% Similarity=0.193 Sum_probs=50.1
Q ss_pred cCChhHHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhcceEeecCCCCCccCCccccccccchhhhhhHHHH
Q psy7047 107 CNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFKIARHYGWA 186 (469)
Q Consensus 107 ~NRPdl~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~i~~i~~~d~~~i~~~~~~k~~~~y~~Ia~Hyk~a 186 (469)
.++|=+.++|++|.+.... .++|..+ .+++.+.+..++..+....++. ..+ ..+...+
T Consensus 25 ~Gkpll~~~l~~l~~~~i~----~ivvv~~--~~~i~~~~~~~~~~v~~~~~~~------------~~g----t~~~~~~ 82 (245)
T PRK05450 25 GGKPMIVRVYERASKAGAD----RVVVATD--DERIADAVEAFGGEVVMTSPDH------------PSG----TDRIAEA 82 (245)
T ss_pred CCcCHHHHHHHHHHhcCCC----eEEEECC--cHHHHHHHHHcCCEEEECCCcC------------CCc----hHHHHHH
Confidence 7888899999999987322 4777765 3445555555443322111111 011 1122223
Q ss_pred HHHhhhhccccEEEEEccCc-ccCchHHHHHHhhh
Q psy7047 187 LNQMFYEFNFSTAIVIEDDL-DIAPDFFEYFLGTY 220 (469)
Q Consensus 187 Ls~vF~~~~~~~vIILEDDL-vvSPDFf~Yf~~~L 220 (469)
+..+ .....+.++|+-=|+ .++++-+.-+-+.+
T Consensus 83 ~~~~-~~~~~~~vlv~~~D~Pli~~~~l~~li~~~ 116 (245)
T PRK05450 83 AAKL-GLADDDIVVNVQGDEPLIPPEIIDQVAEPL 116 (245)
T ss_pred HHhc-CCCCCCEEEEecCCCCCCCHHHHHHHHHHH
Confidence 3332 111356788889998 78888876554433
No 131
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=22.83 E-value=2.2e+02 Score=27.66 Aligned_cols=22 Identities=9% Similarity=0.391 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhCC
Q psy7047 7 ILICALSLSLWVFVSHYVFLGR 28 (469)
Q Consensus 7 ~~~~~~~~~~w~~~~~~~~~~~ 28 (469)
+++-++.|++-.+++++++|..
T Consensus 51 ~i~qlInFlIlv~lL~k~l~kP 72 (205)
T PRK06231 51 FIAHLIAFSILLLLGIFLFWKP 72 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666665654
No 132
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=22.56 E-value=5.6e+02 Score=23.28 Aligned_cols=21 Identities=10% Similarity=0.140 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhC
Q psy7047 7 ILICALSLSLWVFVSHYVFLG 27 (469)
Q Consensus 7 ~~~~~~~~~~w~~~~~~~~~~ 27 (469)
++|.++.|++-.+++..++|.
T Consensus 10 ~~~qli~Flil~~~l~kfl~k 30 (141)
T PRK08476 10 MLATFVVFLLLIVILNSWLYK 30 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445444444444454444454
No 133
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=22.33 E-value=3.1e+02 Score=22.90 Aligned_cols=17 Identities=18% Similarity=0.542 Sum_probs=12.1
Q ss_pred chhhHHHHHHHHHHHHH
Q psy7047 6 YILICALSLSLWVFVSH 22 (469)
Q Consensus 6 ~~~~~~~~~~~w~~~~~ 22 (469)
+|++++|+..+|...=|
T Consensus 10 liif~ifVap~wl~lHY 26 (75)
T TIGR02976 10 LIIFVIFVAPLWLILHY 26 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46777888888975544
No 134
>PRK09458 pspB phage shock protein B; Provisional
Probab=21.47 E-value=2.7e+02 Score=23.45 Aligned_cols=9 Identities=11% Similarity=0.660 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q psy7047 10 CALSLSLWV 18 (469)
Q Consensus 10 ~~~~~~~w~ 18 (469)
.+|+.-+|+
T Consensus 14 ~ifVaPiWL 22 (75)
T PRK09458 14 VLFVAPIWL 22 (75)
T ss_pred HHHHHHHHH
Confidence 333333443
No 135
>PF13974 YebO: YebO-like protein
Probab=21.19 E-value=2.4e+02 Score=24.03 Aligned_cols=7 Identities=29% Similarity=0.914 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy7047 11 ALSLSLW 17 (469)
Q Consensus 11 ~~~~~~w 17 (469)
+++|++|
T Consensus 9 lv~livW 15 (80)
T PF13974_consen 9 LVGLIVW 15 (80)
T ss_pred HHHHHHH
Confidence 3334444
No 136
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=21.11 E-value=3.1e+02 Score=25.26 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHHHhhC
Q psy7047 9 ICALSLSLWVFVSHYVFLG 27 (469)
Q Consensus 9 ~~~~~~~~w~~~~~~~~~~ 27 (469)
|-++.|++-.+++..++|.
T Consensus 27 ~~~inFliL~~lL~k~l~~ 45 (156)
T CHL00118 27 LMALQFLLLMVLLNIILYK 45 (156)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444
No 137
>PF13974 YebO: YebO-like protein
Probab=20.71 E-value=3.9e+02 Score=22.81 Aligned_cols=10 Identities=20% Similarity=0.364 Sum_probs=5.3
Q ss_pred HHHHHHhhCC
Q psy7047 19 FVSHYVFLGR 28 (469)
Q Consensus 19 ~~~~~~~~~~ 28 (469)
+++..||.+|
T Consensus 11 ~livWFFVnR 20 (80)
T PF13974_consen 11 GLIVWFFVNR 20 (80)
T ss_pred HHHHHHHHHH
Confidence 3445555666
No 138
>KOG2571|consensus
Probab=20.35 E-value=4.8e+02 Score=31.15 Aligned_cols=47 Identities=17% Similarity=0.388 Sum_probs=39.0
Q ss_pred HHHHHhhhhc--cccEEEEEccCcccCchHHHHHHhhhhhhcCCCCeeEEec
Q psy7047 185 WALNQMFYEF--NFSTAIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSA 234 (469)
Q Consensus 185 ~aLs~vF~~~--~~~~vIILEDDLvvSPDFf~Yf~~~L~ly~~D~sI~~ISA 234 (469)
|.+...+..+ ..+.+++++-|-.+-||=+ -++...++.|++|.+++|
T Consensus 428 ~~~y~~~~~L~~~v~~il~vD~dT~~~P~ai---~~lv~~f~~dp~VggaCG 476 (862)
T KOG2571|consen 428 WVMYTAFKALMPSVDYILVVDADTRLDPDAL---YHLVKVFDEDPQVGGACG 476 (862)
T ss_pred HHHHHHHHHhcCcceEEEEecCCCccCcHHH---HHHHHHhccCcccceecc
Confidence 4455555544 5778899999999999998 678899999999999998
No 139
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=20.21 E-value=2.8e+02 Score=25.66 Aligned_cols=45 Identities=11% Similarity=0.035 Sum_probs=36.0
Q ss_pred EEEEecCChhHHHHHHHHHhcCCCCCCCcEEEEeCCCChhHHHHHHhhhhc
Q psy7047 102 IVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ 152 (469)
Q Consensus 102 VlV~a~NRPdl~RtLesLlk~rp~~~~~~LiVsqDG~~~e~~~vv~~y~~~ 152 (469)
.-..+.-||.+...|+.|.+. +++.|+.-|++.-+..+++..+..
T Consensus 53 ~~~~v~~rPgv~efL~~l~~~------yel~I~T~~~~~yA~~vl~~ldp~ 97 (156)
T TIGR02250 53 MWYLTKLRPFLHEFLKEASKL------YEMHVYTMGTRAYAQAIAKLIDPD 97 (156)
T ss_pred eEEEEEECCCHHHHHHHHHhh------cEEEEEeCCcHHHHHHHHHHhCcC
Confidence 456788899999999988744 479999999998888888777633
Done!