RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7047
(469 letters)
>gnl|CDD|133007 cd02514, GT13_GLCNAC-TI, GT13_GLCNAC-TI is involved in an essential
step in the synthesis of complex or hybrid-type N-linked
oligosaccharides. Alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I ,
GNT-I) transfers N-acetyl-D-glucosamine from UDP to
high-mannose glycoprotein N-oligosaccharide, an
essential step in the synthesis of complex or
hybrid-type N-linked oligosaccharides. The enzyme is an
integral membrane protein localized to the Golgi
apparatus. The catalytic domain is located at the
C-terminus. These proteins are members of the glycosy
transferase family 13.
Length = 334
Score = 441 bits (1137), Expect = e-154
Identities = 174/336 (51%), Positives = 215/336 (63%), Gaps = 29/336 (8%)
Query: 100 IAIVVIACNRV-TVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQ 158
I ++VIACNR + R LD L+ YRPS EKFPIIVSQD +E +V KS+ + V IQ
Sbjct: 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGDGVTHIQH 61
Query: 159 PNQQDIAVPPKEKKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLG 218
P V P K F+GY++IARHY WAL Q F F +S I++EDDLDIAPDFF YF
Sbjct: 62 PPISIKNVNPPHK-FQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQA 120
Query: 219 TYPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRTDFFPGLGWMLTKDLWDEISVKWP 278
T PLL DP+LWC+SAWNDNGK +D + LLYRTDFFPGLGWMLT+ LW E+ KWP
Sbjct: 121 TLPLLEEDPSLWCISAWNDNGKEHFVD-DTPSLLYRTDFFPGLGWMLTRKLWKELEPKWP 179
Query: 279 RSYWDDWIRQPEQRKDRACIRPEISRTRTFSAGSISPVVTKLPMKVSFYTRTFGKIGVSN 338
+++WDDW+R PEQRK R CIRPEISR T FGK GVSN
Sbjct: 180 KAFWDDWMRLPEQRKGRECIRPEISR-----------------------TYHFGKKGVSN 216
Query: 339 GMYFDKHLKFIHLNDHFVPFTKLNLTYLLRENYDVEYVKLVYSLPTVTYDDL---KMNTI 395
G +FDK+LK I LN FV FTKL+L+YL ++NYD E+ +LVY + ++
Sbjct: 217 GQFFDKYLKKIKLNTVFVVFTKLDLSYLKKDNYDKEFHRLVYGAVVLDHEKNPCELSFVP 276
Query: 396 KHDGAVRIAYYTKDQFRRNAKFLGLMDDFRSGVPRT 431
+G VR+ Y +D F+ AK G+MDD + GVPRT
Sbjct: 277 DTEGKVRVVYTGRDDFKTWAKAFGVMDDLKDGVPRT 312
>gnl|CDD|217352 pfam03071, GNT-I, GNT-I family. Alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase (GNT-I,
GLCNAC-T I) EC:2.4.1.101 transfers
N-acetyl-D-glucosamine from UDP to high-mannose
glycoprotein N-oligosaccharide. This is an essential
step in the synthesis of complex or hybrid-type N-linked
oligosaccharides. The enzyme is an integral membrane
protein localised to the Golgi apparatus, and is
probably distributed in all tissues. The catalytic
domain is located at the C-terminus.
Length = 434
Score = 439 bits (1130), Expect = e-152
Identities = 179/403 (44%), Positives = 243/403 (60%), Gaps = 32/403 (7%)
Query: 30 NNEFSNNIGDVDKALSDLSADINSELEIHNLMMESVQQSIVQKKRALEKAEQENMQVVIN 89
N++ S ++D+ + +++ +M+ + + + Q + ++ E + + +
Sbjct: 33 NHDTSQLRREIDELANRQER----LVKLERGLMQRLDEELSQLRALVQTLEPKGIPKLPV 88
Query: 90 NEKFHYSKDAIAIVVIACNRVT-VSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKS 148
N I ++V ACNR V R ++ L+ YRPS EKFPIIVSQDC+HE + S
Sbjct: 89 NPW----PPVIPVLVFACNRADYVRRHVEKLLHYRPSAEKFPIIVSQDCDHEEVKKEVLS 144
Query: 149 YQNQVHLIQQPNQQDIAVPPKEKKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDI 208
Y NQV I+ + + IA+PP +KF Y+KIARHY WALNQ+FY+ NFS+ I+ EDDL+I
Sbjct: 145 YGNQVTYIKHLDFEPIAIPPGHRKFTAYYKIARHYKWALNQVFYKHNFSSVIITEDDLEI 204
Query: 209 APDFFEYFLGTYPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRTDFFPGLGWMLTKD 268
APDFF YF T LL DP+LWCVSAWNDNGK +D S LYR+DFFPGLGWML++
Sbjct: 205 APDFFSYFSATRYLLERDPSLWCVSAWNDNGKEQNVDDSRPYTLYRSDFFPGLGWMLSRK 264
Query: 269 LWDEISVKWPRSYWDDWIRQPEQRKDRACIRPEISRTRTFSAGSISPVVTKLPMKVSFYT 328
WDE+ KWP+++WDDW+R PEQRK R CIRPEISR T
Sbjct: 265 TWDELEPKWPKAFWDDWMRLPEQRKGRQCIRPEISR-----------------------T 301
Query: 329 RTFGKIGVSNGMYFDKHLKFIHLNDHFVPFTKLNLTYLLRENYDVEYVKLVYSLPTVTYD 388
FGK G S G +F +HL+ I LND FV F +++L+YL ENYD ++ LV + D
Sbjct: 302 MNFGKEGSSKGQFFSQHLEKIKLNDVFVDFKQIDLSYLQEENYDKDFSLLVRGAVPLQID 361
Query: 389 DLKMNTIKHDGAVRIAYYTKDQFRRNAKFLGLMDDFRSGVPRT 431
D+ + K G VRI Y +D F A LG+M DF++GVPRT
Sbjct: 362 DVVLKDRKIKGDVRIQYTGRDDFEAKADALGIMHDFKAGVPRT 404
>gnl|CDD|225190 COG2308, COG2308, Uncharacterized conserved protein [Function
unknown].
Length = 488
Score = 33.8 bits (78), Expect = 0.18
Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 17/110 (15%)
Query: 210 PDFFEYFLGTYPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRT----DFFPGLGWML 265
P EY+LG PLL + PT WC + ++ S ++ + +G
Sbjct: 331 PQMIEYYLGEEPLLPNVPTYWC---GEPDELEHVLANLSELVIKPVEGSGGYGMLVGPAA 387
Query: 266 TKDLWDEISVKWPRSYWDDWIRQPEQRKDRACIRPEISRTRTFSAGSISP 315
+K + + ++I QP ++S TF G ++P
Sbjct: 388 SKAELAAFAERIKADPE-NYIAQPV---------LQLSTVPTFVDGGLAP 427
>gnl|CDD|225471 COG2919, COG2919, Septum formation initiator [Cell division and
chromosome partitioning].
Length = 117
Score = 30.4 bits (69), Expect = 0.62
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 63 ESVQQSIVQKKRALEKAEQENMQVVINNEKFHYSKDAIA 101
+Q+ I ++ LEK N + + +D I
Sbjct: 53 LQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIE 91
>gnl|CDD|202014 pfam01858, RB_A, Retinoblastoma-associated protein A domain. This
domain has the cyclin fold as predicted.
Length = 192
Score = 31.2 bits (71), Expect = 0.75
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 21/73 (28%)
Query: 61 MMESVQQSIVQKKRALEKAEQENMQVVINNEKFHYSKDAIAIVVIACNRVTVSRCLDL-L 119
++ES+ ++ ++ ++ ++ E FH S ++AC CL+L L
Sbjct: 84 VLESILKAEEKRLHD------MDLSNLLEQEAFHRS-------LLAC-------CLELVL 123
Query: 120 IKYRPSVEKFPII 132
Y+ + FP I
Sbjct: 124 ATYKTTDLSFPWI 136
>gnl|CDD|222281 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 229
Score = 31.6 bits (72), Expect = 0.77
Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 16/120 (13%)
Query: 100 IAIVVIACNR-VTVSRCLDLLIKY-RPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQ 157
+A+VV N + R L ++ P +E +IV D + + T +V + L
Sbjct: 3 VAVVVPTWNEDKVLGRTLRSILAQDYPRLE---VIVVVDGSDDETLDVAR------ELAA 53
Query: 158 QPNQQDIAVPPKEKKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFL 217
+ V + + K ALN+ ++++ D + PD L
Sbjct: 54 AYPDVRVHVVRRPRPPGPTGKA-----RALNEALRAIKSDLVVLLDADSVVDPDTLRRLL 108
>gnl|CDD|216691 pfam01768, Birna_VP4, Birnavirus VP4 protein. VP4 is a viral
protease. The large RNA segment of birnaviruses codes
for a polyprotein (N-VP2-VP4-VP3-C).
Length = 264
Score = 31.0 bits (70), Expect = 1.0
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 420 LMDDFRSGVPRTVRTSALLQTNGKHPNCGRDI 451
L+DD + GVPR T L+ + CG DI
Sbjct: 201 LVDDIKEGVPRMAFTGELVG-DSVGEICGVDI 231
>gnl|CDD|133474 cd06532, Glyco_transf_25, Glycosyltransferase family 25
[lipooligosaccharide (LOS) biosynthesis protein] is a
family of glycosyltransferases involved in LOS
biosynthesis. The members include the beta(1,4)
galactosyltransferases: Lgt2 of Moraxella catarrhalis,
LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of
Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes
the addition of galactose (Gal) to the growing chain of
LOS on the cell surface. N. gonorrhoeae LgtB and LgtE
link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and
Glc (glucose), respectively. The genes encoding LgtB and
LgtE are two genes of a five gene locus involved in the
synthesis of gonococcal LOS. LgtE is believed to perform
the first step in LOS biosynthesis.
Length = 128
Score = 29.1 bits (66), Expect = 2.1
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 14/61 (22%)
Query: 165 AVPPKEKKFKGYFKIARHYGWALN--------------QMFYEFNFSTAIVIEDDLDIAP 210
+ +E YG L Q E N A+++EDD + P
Sbjct: 38 DLSEEELAALYDALFLPRYGRPLTPGEIGCFLSHYKLWQKIVESNLEYALILEDDAILDP 97
Query: 211 D 211
D
Sbjct: 98 D 98
>gnl|CDD|133016 cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the
biosynthesis of succinoglycan. Succinoglycan
Biosynthesis Protein ExoA catalyzes the formation of a
beta-1,3 linkage of the second sugar (glucose) of the
succinoglycan with the galactose on the lipid carrie.
Succinoglycan is an acidic exopolysaccharide that is
important for invasion of the nodules. Succinoglycan is
a high-molecular-weight polymer composed of repeating
octasaccharide units. These units are synthesized on
membrane-bound isoprenoid lipid carriers, beginning with
galactose followed by seven glucose molecules, and
modified by the addition of acetate, succinate, and
pyruvate. ExoA is a membrane protein with a
transmembrance domain at c-terminus.
Length = 249
Score = 29.5 bits (67), Expect = 2.9
Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 100 IAIVVIACNR-VTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQ 152
++I++ N + L+ L+ + IIV + + T +++ Y +
Sbjct: 2 VSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAK 55
>gnl|CDD|224030 COG1105, FruK, Fructose-1-phosphate kinase and related
fructose-6-phosphate kinase (PfkB) [Carbohydrate
transport and metabolism].
Length = 310
Score = 29.5 bits (67), Expect = 3.6
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 332 GKIGVSNGMYFDKHLKFIHLNDHFVPF---TKLNLTYLLRENYDVEYVKLVYSLPTVTYD 388
G +G G +F LK + D FV T++N+ + + D E ++ + P ++
Sbjct: 57 GFLGGFTGEFFVALLKDEGIPDAFVEVKGDTRINVK--ILDEEDGEETEINFPGPEISEA 114
Query: 389 DLKM 392
+L+
Sbjct: 115 ELEQ 118
>gnl|CDD|115367 pfam06705, SF-assemblin, SF-assemblin/beta giardin. This family
consists of several eukaryotic SF-assemblin and related
beta giardin proteins. During mitosis the
SF-assemblin-based cytoskeleton is reorganised; it
divides in prophase and is reduced to two dot-like
structures at each spindle pole in metaphase. During
anaphase, the two dots present at each pole are
connected again. In telophase there is an asymmetrical
outgrowth of new fibres. It has been suggested that
SF-assemblin is involved in re-establishing the
microtubular root system characteristic of interphase
cells after mitosis.
Length = 247
Score = 29.4 bits (66), Expect = 3.7
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 31 NEFSNNIGDVDKALSDLSADINSELEIHNLMMESVQQSIVQKKRAL------EKAEQENM 84
F + + + L+DL +I +E E +E + S+V+K E+ ++
Sbjct: 88 AAFKSAVDSLSDTLNDLHTNIRNEREQRRSDIEHLATSLVKKVNECVAAIDEERISRKQE 147
Query: 85 QVVIN 89
Q I
Sbjct: 148 QSQIL 152
>gnl|CDD|198231 cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain found in Fyn.
Fyn is a member of the Src non-receptor type tyrosine
kinase family of proteins. Fyn is involved in the
control of cell growth and is required in the following
pathways: T and B cell receptor signaling,
integrin-mediated signaling, growth factor and cytokine
receptor signaling, platelet activation, ion channel
function, cell adhesion, axon guidance, fertilization,
entry into mitosis, and differentiation of natural
killer cells, oligodendrocytes and keratinocytes. The
protein associates with the p85 subunit of
phosphatidylinositol 3-kinase and interacts with the
Fyn-binding protein. Alternatively spliced transcript
variants encoding distinct isoforms exist. Fyn is
primarily localized to the cytoplasmic leaflet of the
plasma membrane. Tyrosine phosphorylation of target
proteins by Fyn serves to either regulate target protein
activity, and/or to generate a binding site on the
target protein that recruits other signaling molecules.
FYN has been shown to interact with a number of proteins
including: BCAR1, Cbl, Janus kinase, nephrin, Sky,
tyrosine kinase, Wiskott-Aldrich syndrome protein, and
Zap-70. Fyn has a unique N-terminal domain, an SH3
domain, an SH2 domain, a kinase domain and a regulatory
tail, as do the other members of the family. In general
SH2 domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 101
Score = 27.7 bits (61), Expect = 5.1
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 364 TYLLRENYDVEYVKLVYSLPTVTYDDLKMNTIKH 397
T+L+RE+ E K YSL +DD+K + +KH
Sbjct: 28 TFLIRES---ETTKGAYSLSIRDWDDMKGDHVKH 58
>gnl|CDD|221849 pfam12912, N_NLPC_P60, NLPC_P60 stabilising domain, N term. This
domain, at the N-terminus, appears to be the stabilising
domain for the structure PDB:3m1u, which is a
four-domain protein. The next domain is an SH3b1, the
third an SH3b2 and the last, the C-terminal region, the
catalytic domain of the cysteine-peptidase type, ie
family NLPC_P60, pfam00877 (details derived from
TOPSAN).
Length = 125
Score = 27.4 bits (61), Expect = 7.6
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 254 RTDFFPGLGWMLTKDLWDEISVKWPRSYWDDWIRQ 288
R D F K + E WP+S++D I
Sbjct: 85 RKDVFWIFRKYNRKKGYGENLQPWPQSWFDALIAN 119
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,049,891
Number of extensions: 2352201
Number of successful extensions: 2006
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1998
Number of HSP's successfully gapped: 23
Length of query: 469
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 369
Effective length of database: 6,502,202
Effective search space: 2399312538
Effective search space used: 2399312538
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)