RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7047
(469 letters)
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-
acetylglucosaminyltransferase; methylmercury derivative,
N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus
cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A*
2am3_A* 2am4_A* 2am5_A*
Length = 343
Score = 357 bits (917), Expect = e-121
Identities = 186/332 (56%), Positives = 238/332 (71%), Gaps = 23/332 (6%)
Query: 100 IAIVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQP 159
I I+VIAC+R TV RCLD L+ YRPS E FPIIVSQDC HE T VI SY + V I+QP
Sbjct: 4 IPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQP 63
Query: 160 NQQDIAVPPKEKKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGT 219
+ +IAV P +KF+GY+KIARHY WAL Q+F+ FN+ A+V+EDDL++APDFFEYF T
Sbjct: 64 DLSNIAVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQAT 123
Query: 220 YPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRTDFFPGLGWMLTKDLWDEISVKWPR 279
YPLL +DP+LWCVSAWNDNGK ++D+S +LLYRTDFFPGLGW+L +LW E+ KWP+
Sbjct: 124 YPLLKADPSLWCVSAWNDNGKEQMVDSSKPELLYRTDFFPGLGWLLLAELWAELEPKWPK 183
Query: 280 SYWDDWIRQPEQRKDRACIRPEISRTRTFSAGSISPVVTKLPMKVSFYTRTFGKIGVSNG 339
++WDDW+R+PEQRK RAC+RPEISR T TFG+ GVS+G
Sbjct: 184 AFWDDWMRRPEQRKGRACVRPEISR-----------------------TMTFGRKGVSHG 220
Query: 340 MYFDKHLKFIHLNDHFVPFTKLNLTYLLRENYDVEYVKLVYSLPTVTYDDLKMNTIKHDG 399
+FD+HLKFI LN FVPFT+L+L+YL +E YD +++ VY P + + ++ N K G
Sbjct: 221 QFFDQHLKFIKLNQQFVPFTQLDLSYLQQEAYDRDFLARVYGAPQLQVEKVRTNDRKELG 280
Query: 400 AVRIAYYTKDQFRRNAKFLGLMDDFRSGVPRT 431
VR+ Y +D F+ AK LG+MDD +SGVPR
Sbjct: 281 EVRVQYTGRDSFKAFAKALGVMDDLKSGVPRA 312
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 4e-09
Identities = 70/467 (14%), Positives = 141/467 (30%), Gaps = 144/467 (30%)
Query: 13 SLSLWV----FVSHYVFLGRSNNEFSNNIGDVDKALSDLSADINSELEIHNL---MMESV 65
L +VS V ++ ++ L++ +IH L +++
Sbjct: 57 PAELVGKFLGYVSSLV----EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 66 QQSIVQKKRALEKAEQENMQVVINNEKFHYSK--DAIA---IVVIAC-----NRVTVSRC 115
++V+ K ++ + +K S A+ ++A N
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN---TDDY 169
Query: 116 LDLLIK----YRPSVEKFPIIVSQDCNHEATT--NVIKSYQNQVHLIQ-------QPNQQ 162
+ L Y V ++ + T + K + +++++ P++
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 163 DIAVPPKEKKFKG------YFKIARHYGWALNQMFYEFNFST--------AIVI------ 202
+ P G Y A+ G+ ++ +T A+ I
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 203 EDDLDIAPDFFEY--FLG-----TYPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRT 255
E F+G YP P++ S N+ G P+
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS------------- 336
Query: 256 DFFPGLGWMLTKDLWDEISVK-WPRSYWDDWIRQ-----PEQRKDRACIRPEISRT---R 306
P ML S+ + D++ + P ++ + EIS +
Sbjct: 337 ---P----ML--------SISNLTQEQVQDYVNKTNSHLPAGKQ----V--EISLVNGAK 375
Query: 307 TFSAGSISPVVTKLPMKVSFY--TRTFGKIGVSNGM------YFDKHLKFIHLNDHF--- 355
VV+ P S Y T K +G+ + ++ LKF + F
Sbjct: 376 NL-------VVSGPPQ--SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN---RFLPV 423
Query: 356 -VPF--------TKLNLTYLLREN--YDVEYVKL-VYSLPTVTYDDL 390
PF + L L++ N ++ + +++ VY T DL
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD--TFDGSDL 468
Score = 31.6 bits (71), Expect = 0.73
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 11/57 (19%)
Query: 39 DVDKALSDLSADINSELEI--HNLMMESVQQSIV-QKKRALEKAEQENMQVVINNEK 92
+ + + +EI +N+ QQ + RAL+ V+N K
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNV---ENQQYVAAGDLRALDTVTN-----VLNFIK 1873
Score = 29.2 bits (65), Expect = 4.1
Identities = 27/192 (14%), Positives = 52/192 (27%), Gaps = 102/192 (53%)
Query: 252 LYRTDFFPGLGWMLTKDLWDEISVKWPRSYWDDWIRQPEQRKDRACIRPEISRTRTFSAG 311
LY+T +D+W+ + +Y G
Sbjct: 1635 LYKT--SK-----AAQDVWNRADNHFKDTY-----------------------------G 1658
Query: 312 -SISPVVTKLPMKVSFYTRTFG-----KIGVS-NGMYFDKHLK--------FIHLNDHFV 356
SI +V P+ ++ + FG +I + + M F+ + F +N+H
Sbjct: 1659 FSILDIVINNPVNLTIH---FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 357 PFT------KLNLTY---------------LLRENYDV------------EY-------- 375
+T L+ T L+ + EY
Sbjct: 1716 SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD 1775
Query: 376 -------VKLVY 380
V++V+
Sbjct: 1776 VMSIESLVEVVF 1787
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.004
Identities = 75/535 (14%), Positives = 154/535 (28%), Gaps = 168/535 (31%)
Query: 16 LWVFVSH-----YVFLG---RSNNEF-SNNIGDVDKALSDLSADINSELEIHNLMMESVQ 66
W +S F+ R N +F + I + S ++ + + + Q
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ---RDRLYNDNQ 124
Query: 67 ----------QSIVQKKRALEKAEQENMQVVINNEKFH----YSKDAIAIVVIACNRVTV 112
Q ++ ++AL + ++ K +A+ V
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLI------DGVLGSGKTWVALDV-------- 170
Query: 113 SRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQPNQQ--DIAVPPK- 169
CL ++ + + F + + + E V++ Q ++ I D + K
Sbjct: 171 --CLSYKVQCKMDFKIFWLNLKNCNSPET---VLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 170 -----EKKFKGYFKIARHYGWAL--------NQMFYEFNFSTAIVI-------EDDLDIA 209
+ + + K ++ Y L + + FN S I++ D L A
Sbjct: 226 RIHSIQAELRRLLK-SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 210 P-------------------DFFEYFLG------------TYPLLIS--------DPTLW 230
+L T P +S W
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 231 CVSAW---NDNGKPTLIDTSSSDL---LYRTDF-----FPGLGWMLTKD----------L 269
W N + T+I++S + L YR F FP +
Sbjct: 345 --DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-------PSAHIPTILLSLI 395
Query: 270 WDEISVKWPRSYWDDWIRQ---PEQRKDRACIRPEIS-RTRTFSAGSIS---PVVTKLPM 322
W ++ + + +Q K+ P I + + +V +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 323 KVSFYTRTFGKIGVSNGMYFDK----HLKFIHLNDHFVPFTKLNLTYLLRENYDVEYV-- 376
+F + + YF HLK I + F + +L D ++
Sbjct: 456 PKTFDSDDLIPPYLDQ--YFYSHIGHHLKNIEHPERMTLFRMV---FL-----DFRFLEQ 505
Query: 377 KLVYSLPTVTYDDLKMNTIKHDGAVRIAYYTKDQFRRN-AKFLGLMDDFRSGVPR 430
K+ + +NT++ ++ +Y K N K+ L++ +P+
Sbjct: 506 KIRHDSTAWNASGSILNTLQ-----QLKFY-KPYICDNDPKYERLVNAILDFLPK 554
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown
function (DUF404), structural genomics; 2.35A
{Methylobacillus flagellatus}
Length = 474
Score = 34.9 bits (80), Expect = 0.052
Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 17/110 (15%)
Query: 210 PDFFEYFLGTYPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRTD----FFPGLGWML 265
P+ ++LG P+L + PT + ++D + ++ + +G
Sbjct: 328 PEMIRFYLGEEPILSNVPTYQL---SKADDLKYVLDNLAELVVKEVQGSGGYGMLVGPAA 384
Query: 266 TKDLWDEISVKWPRSYWDDWIRQPEQRKDRACIRPEISRTRTFSAGSISP 315
+K ++ + + ++I QP +S T I+P
Sbjct: 385 SKQELEDFRQRILANPA-NYIAQP---------TLALSTCPTLVETGIAP 424
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion,
neurotransmission, endocytosis/exocytosis complex;
2.95A {Loligo pealei} SCOP: h.1.15.1
Length = 87
Score = 31.9 bits (72), Expect = 0.069
Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 31 NEFSNNIGDVDKALSDL---SADINSELEIHNLMMESVQQSIVQKKRALEKAEQENMQVV 87
++ NN+ +V + +L + D+ +E+ N ++ +Q +KAE ++
Sbjct: 26 DDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQ----------QKAESNESRID 75
Query: 88 INNEK 92
N+K
Sbjct: 76 EANKK 80
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 33.7 bits (77), Expect = 0.082
Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 1/89 (1%)
Query: 334 IGVSNGMYFDKHLKFIHLNDHFVPFTKLNLTYLLRENYDVEYVKLVYSLPTVTYDDLKMN 393
I N + F H P L ++L E VK+ + L
Sbjct: 138 IESPNPTSLYSLINFYIDPTHKKPVHPETLKFIL-EYLGFRDVKIEFFEECEELTKLAKI 196
Query: 394 TIKHDGAVRIAYYTKDQFRRNAKFLGLMD 422
I ++ + N G D
Sbjct: 197 DSNTVSEEVIRVINENIEKLNRILFGPQD 225
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle,
transport protein; 1.45A {Rattus norvegicus} SCOP:
h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D*
3hd9_D 3ipd_D 1urq_D 1xtg_B
Length = 66
Score = 30.5 bits (69), Expect = 0.14
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 14/62 (22%)
Query: 31 NEFSNNIGDVDKALSDLSADINSELEIHNLMMESVQQSIVQKKRALEKAEQENMQVVINN 90
+ S IG+ L ++ D+ +E++ N ++ + EKA+ ++ N
Sbjct: 13 EQVSGIIGN----LRHMALDMGNEIDTQNRQIDRIM----------EKADSNKTRIDEAN 58
Query: 91 EK 92
++
Sbjct: 59 QR 60
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion
protein complex, transport protein; 2.40A {Rattus
norvegicus} SCOP: h.1.15.1
Length = 87
Score = 30.2 bits (68), Expect = 0.28
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 14/62 (22%)
Query: 31 NEFSNNIGDVDKALSDLSADINSELEIHNLMMESVQQSIVQKKRALEKAEQENMQVVINN 90
+ S IG+ L ++ D+ +E++ N ++ + EKA+ ++ N
Sbjct: 32 EQVSGIIGN----LRHMALDMGNEIDTQNRQIDRIM----------EKADSNKTRIDEAN 77
Query: 91 EK 92
++
Sbjct: 78 QR 79
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 32.0 bits (72), Expect = 0.40
Identities = 30/200 (15%), Positives = 64/200 (32%), Gaps = 28/200 (14%)
Query: 94 HYSKD--AIAIVVIACN--RVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSY 149
+ D A ++V+ N R + R + ++K P II+ D +++ +
Sbjct: 60 QWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGK 119
Query: 150 QNQVHLIQQPNQQDIA----VPPKEKKFKGYFKIARH----YGWALNQMFYEFNFSTAIV 201
+V +++ ++ + + K + H W L + V
Sbjct: 120 IEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHW-LEPLLERVAEDRTRV 178
Query: 202 IEDDLD-IAPDFFEYFLGTYPLLISDPTLWCVSAWNDNGK-------PTLIDTSSSDLLY 253
+ +D I D F+Y L WN K +
Sbjct: 179 VSPIIDVINMDNFQYVGA-------SADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPI 231
Query: 254 RTDFFPGLGWMLTKDLWDEI 273
+T G +++ K ++E+
Sbjct: 232 KTPMIAGGLFVMDKFYFEEL 251
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein
metal transport, hydrolase; HET: NAG; 2.91A
{Streptococcus pneumoniae} SCOP: h.4.19.1
Length = 125
Score = 30.6 bits (68), Expect = 0.41
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 32 EFSNNIGDVDKALSDLS---ADINSELEIHNLMMESVQQSIVQKKRALEKAEQE 82
E S+ I ++D ++ L + + E ++++I KK LEK E +
Sbjct: 65 ELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEAD 118
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease,
hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens}
SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A
1qdu_A* 1f9e_A*
Length = 164
Score = 29.6 bits (66), Expect = 1.2
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 86 VVINNEKFHYSKDAIAIVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNV 145
++INN F +++ + + +R L + F I DC E +
Sbjct: 27 LIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEEL-HFEIKPHDDCTVEQIYEI 85
Query: 146 IKSYQNQVH 154
+K YQ H
Sbjct: 86 LKIYQLMDH 94
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.3
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 18/44 (40%)
Query: 72 KKRALEKAEQENMQVVINNEKFHYSKD---AIAIVVIACNRVTV 112
+K+AL+K + + K Y+ D A+AI + T+
Sbjct: 18 EKQALKKLQ--------ASLKL-YADDSAPALAI------KATM 46
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex;
3.19A {Vanderwaltozyma polyspora}
Length = 1046
Score = 30.4 bits (67), Expect = 1.4
Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 7/152 (4%)
Query: 84 MQVVINNEKFHYSKDAIAIVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATT 143
NNEK ++ I ++ + PSV+ V ++ + A
Sbjct: 297 DPRFKNNEKEQFTLMDWIIECYHQSKAIRDIRYNPKTAPPPSVKDLNYFVEKNTDISALL 356
Query: 144 NVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFKIARHYGWALNQMFYEFNFSTAIVIE 203
+K Y+ ++ N+ PP+++ KG R A++ F S
Sbjct: 357 KGLKVYRP--YINYSINKDGTPKPPRKRSSKGIVGFTRES--AVSMRFNVLESSLKKNSA 412
Query: 204 DDLDIAPD---FFEYFLGTYPLLISDPTLWCV 232
+ P +YF Y + + P + V
Sbjct: 413 PKPNEKPININTIDYFKRKYDITLKYPDMKLV 444
>3evy_A Putative type I restriction enzyme R protein; structural genomics,
unknown function, PSI-2, protein structure initiative;
1.95A {Bacteroides fragilis nctc 9343}
Length = 239
Score = 29.5 bits (66), Expect = 1.8
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 11/80 (13%)
Query: 145 VIKSYQNQVHLIQQ--PNQQDIAVPPKEKKFKGYFKIARHYGWALNQM--FYEFNFSTAI 200
+++ + P + + E + + + R N++ + EF+
Sbjct: 16 LVERFNEMAAEFLSYFPTVKSVGNLESELDKRRFVILFRAMLRLRNEVKGYNEFD----- 70
Query: 201 VIEDDLDIAPDFFEYFLGTY 220
+DL I F + Y
Sbjct: 71 --AEDLTIEEQRFADYQSKY 88
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing,
HOST- virus interaction, polymorphism, cytoplasm,
disease mutation; 1.90A {Homo sapiens} PDB: 2k7z_A
1i4e_B 2fun_B 2c2z_B*
Length = 271
Score = 29.4 bits (65), Expect = 2.4
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 86 VVINNEKFHYSKDAIAIVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNV 145
++INN F +++ + + +R L + F I DC E +
Sbjct: 21 LIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEEL-HFEIKPHDDCTVEQIYEI 79
Query: 146 IKSYQNQVH 154
+K YQ H
Sbjct: 80 LKIYQLMDH 88
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer
protein, metal transport; NMR {Thermus thermophilus}
PDB: 2k6y_A 2k6z_A 2k70_A
Length = 120
Score = 28.1 bits (62), Expect = 2.5
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 36 NIGDVDKALSDLSADINSELEIHNLMMESVQQSIVQKKRALEKAE-QENMQVVINNEKFH 94
N GD+ L + +E+H M V+ V R + E +V + +H
Sbjct: 24 NPGDLPLRLVGARTPVAERVELHETFMREVEGKKVMGMRPVPFLEVPPKGRVELKPGGYH 83
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 29.4 bits (66), Expect = 2.7
Identities = 17/172 (9%), Positives = 44/172 (25%), Gaps = 28/172 (16%)
Query: 266 TKDLWDEISVKWPRSY--------WDDWIRQP-----EQRKDRACIRPEISRTRTFSAGS 312
T + + Y ++WI + + + +
Sbjct: 423 TDNFVKYLKANLTDKYPNIVSDNEINEWIFKAGLPSYAPQPTSNAFKVIDKQINQLVTDE 482
Query: 313 ISPVVTKL-----PMKVSFYTRTFGKIGVSNGMYFDKHLKFIHLNDHFVPFTKLNLTYLL 367
++ + F + + DK + ++ + L+ +
Sbjct: 483 LTLEQLPTAQWTLHEWLHFINNLPVDLDHQRMVNLDKAFDLTNSSNAEIAHAWYLLS--V 540
Query: 368 RENYDVEYVKLVYSLPTV--------TYDDLKMNTIKHDGAVRIAYYTKDQF 411
R +Y Y + L ++ Y +L N AV + + +
Sbjct: 541 RADYKEVYPAMAKYLKSIGRRKLIVPLYKELAKNAESKAWAVEVYKQARPGY 592
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal
transduction, photocycle ST membrane protein; HET: BOG
RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Length = 163
Score = 28.1 bits (62), Expect = 3.9
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 18/92 (19%)
Query: 7 ILICALSLSLWVFVSHYVFLGRSNNEFSNNIGDVDKALSDLSA-DINSELEIH------- 58
+ + L V+ LG + ++ + S + D++ ELE
Sbjct: 62 LGLIILLGINLGLVA--ATLGGD---TAASLSTLAAKASRMGDGDLDVELETRREDEIGD 116
Query: 59 -----NLMMESVQQSIVQKKRALEKAEQENMQ 85
+ M +SV+ S+ K A E AEQ +
Sbjct: 117 LYAAFDEMRQSVRTSLEDAKNAREDAEQAQKR 148
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP-
murnac-Ala, peptidoglycan biosynthesis, peptidoglycan
synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Length = 285
Score = 27.6 bits (62), Expect = 8.6
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 77 EKAEQENMQVVINNEKFHYSKDAIAIVVIACNRVTVS-RCLDLLIKYRPSVEKFPIIV 133
EK+E ++ V+ + +A+ V+ACN T S L L R EKF V
Sbjct: 62 EKSEAFIVERVVAIVTAVQERYPLALAVVACN--TASTVSLPAL---R---EKFDFPV 111
>2gbb_A Putative chorismate mutase; alpha helical bundle, isomerase; HET:
CIT; 2.10A {Yersinia pestis biovar microtus str}
Length = 156
Score = 26.8 bits (59), Expect = 9.4
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 272 EISVKWPRSYWDDWIRQPE---QRKDRACIRPEISR 304
+ Y DW+ QPE Q K +R I
Sbjct: 67 NAAKAIQYRYRADWLSQPEPGWQPKPLDDVRANIGE 102
>2yib_D RNA-directed RNA polymerase; transferase, reverse transcriptase,
IPNV; 3.80A {Infectious pancreatic necrosis virus}
Length = 770
Score = 27.7 bits (60), Expect = 9.6
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 245 DTSSSDLLYRTDFFPGLGWMLTKDLWDEISVKWPRSYWDDWIRQPEQRKDRACIRPEISR 304
DT++ L+ F LG T + K +W + +R +
Sbjct: 258 DTTAEALVLADSFIRDLGRAATSADPEAGVKKTITDFWYLSCGLLFPKGERYTQVDWDKK 317
Query: 305 TRTFSAGSISPVVTKLPMKV 324
TR + +P T L + +
Sbjct: 318 TRNIWS---APYPTHLLLSM 334
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,297,489
Number of extensions: 440053
Number of successful extensions: 968
Number of sequences better than 10.0: 1
Number of HSP's gapped: 963
Number of HSP's successfully gapped: 34
Length of query: 469
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 372
Effective length of database: 3,993,456
Effective search space: 1485565632
Effective search space used: 1485565632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)