RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7047
(469 letters)
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 343
Score = 377 bits (970), Expect = e-130
Identities = 186/332 (56%), Positives = 238/332 (71%), Gaps = 23/332 (6%)
Query: 100 IAIVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNVIKSYQNQVHLIQQP 159
I I+VIAC+R TV RCLD L+ YRPS E FPIIVSQDC HE T VI SY + V I+QP
Sbjct: 4 IPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQP 63
Query: 160 NQQDIAVPPKEKKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLDIAPDFFEYFLGT 219
+ +IAV P +KF+GY+KIARHY WAL Q+F+ FN+ A+V+EDDL++APDFFEYF T
Sbjct: 64 DLSNIAVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQAT 123
Query: 220 YPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRTDFFPGLGWMLTKDLWDEISVKWPR 279
YPLL +DP+LWCVSAWNDNGK ++D+S +LLYRTDFFPGLGW+L +LW E+ KWP+
Sbjct: 124 YPLLKADPSLWCVSAWNDNGKEQMVDSSKPELLYRTDFFPGLGWLLLAELWAELEPKWPK 183
Query: 280 SYWDDWIRQPEQRKDRACIRPEISRTRTFSAGSISPVVTKLPMKVSFYTRTFGKIGVSNG 339
++WDDW+R+PEQRK RAC+RPEISR T TFG+ GVS+G
Sbjct: 184 AFWDDWMRRPEQRKGRACVRPEISR-----------------------TMTFGRKGVSHG 220
Query: 340 MYFDKHLKFIHLNDHFVPFTKLNLTYLLRENYDVEYVKLVYSLPTVTYDDLKMNTIKHDG 399
+FD+HLKFI LN FVPFT+L+L+YL +E YD +++ VY P + + ++ N K G
Sbjct: 221 QFFDQHLKFIKLNQQFVPFTQLDLSYLQQEAYDRDFLARVYGAPQLQVEKVRTNDRKELG 280
Query: 400 AVRIAYYTKDQFRRNAKFLGLMDDFRSGVPRT 431
VR+ Y +D F+ AK LG+MDD +SGVPR
Sbjct: 281 EVRVQYTGRDSFKAFAKALGVMDDLKSGVPRA 312
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 30.4 bits (68), Expect = 0.50
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 301 EISRTRTFSAGSISPVVTKLPMKVSFYTRTFGKIGVSNGMYFDKHLKFIHLNDHFVPFTK 360
+ F + + P F + G++ + ++ F + + F
Sbjct: 168 TVDPKSKFQGQKVWLGIFTDPTLGVFASAYTGQVEKNTSIFIKNEFTFYDEDGKPINFDN 227
Query: 361 --LNLTYLLRENYDVEYVK 377
L++ L RE+ +E K
Sbjct: 228 ALLSVASLNREHNSIEMAK 246
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
N-acetylgalactosaminyltransferase 1, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 328
Score = 28.8 bits (63), Expect = 1.5
Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 17/197 (8%)
Query: 94 HYSKDA--IAIVVIACNRV--TVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATT-----N 144
Y + ++V++ N T+ R + +I P I++ D + +
Sbjct: 16 VYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLES 75
Query: 145 VIKSYQNQVHLIQQPNQQDIAVPPK---EKKFKGYFKIARHYGW----ALNQMFYEFNFS 197
+K + VH+I+ + + + L +
Sbjct: 76 YVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHD 135
Query: 198 TAIVIEDDLD-IAPDFFEYFLGTYPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRTD 256
V+ +D I+ D FEY G+ + + L RT
Sbjct: 136 RRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTP 195
Query: 257 FFPGLGWMLTKDLWDEI 273
G + + +D + EI
Sbjct: 196 TMAGGLFSIDRDYFQEI 212
>d1w26a1 a.223.1.1 (A:248-432) Trigger factor, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 185
Score = 27.7 bits (61), Expect = 2.1
Identities = 22/154 (14%), Positives = 50/154 (32%), Gaps = 24/154 (15%)
Query: 30 NNEFSNNIGDVDKALSDLSADINSELEIH-----------NLMMESVQQSIVQKKRALEK 78
EF G D ++ L A++ +E + V+ + + AL
Sbjct: 2 TAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLVKANDIDVPAALID 61
Query: 79 AEQENMQVVINNEKFHYSKDAIAIV-----VIACNRVTVSRCLDLLIKYRPSVEKFPIIV 133
+E + ++ K A+ + A RV V L +I+ +
Sbjct: 62 SEIDVLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIR------TNELKA 115
Query: 134 SQDCNHEATTNVIKSYQN--QVHLIQQPNQQDIA 165
++ + +Y++ +V N++ +
Sbjct: 116 DEERVKGLIEEMASAYEDPKEVIEFYSKNKELMD 149
>g1qtn.1 c.17.1.1 (A:,B:) Caspase-8 {Human (Homo sapiens) [TaxId:
9606]}
Length = 242
Score = 27.9 bits (61), Expect = 2.7
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 86 VVINNEKFHYSKDAIAIVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCNHEATTNV 145
++INN F +++ + + +R L + F I DC E +
Sbjct: 15 LIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEEL-HFEIKPHDDCTVEQIYEI 73
Query: 146 IKSYQNQVH 154
+K YQ H
Sbjct: 74 LKIYQLMDH 82
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
dispensable insert domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 25.5 bits (56), Expect = 3.1
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 62 MESVQQSIVQKKRALEKAEQENMQVVINNEKFHYSKDAIAIVVIACNRVTVSRCLDLLIK 121
M ++Q I KK L A ++ KDA V+ + V R + L+K
Sbjct: 4 MMNLQTKIDAKKEQLADARRDLKSA---KADAKVMKDAKTKKVVESKKKAVQRLEEQLMK 60
>d2enda_ a.18.1.1 (A:) T4 endonuclease V {Bacteriophage T4 [TaxId:
10665]}
Length = 137
Score = 26.7 bits (59), Expect = 3.3
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 18/57 (31%)
Query: 277 WPRSYWDDWIRQPEQRKDRACIRPEISRTRTFSAGSISPVVTKLPMKVSFYTRTFGK 333
P+ + D+I IS+ R + K+ + ++Y + +GK
Sbjct: 95 IPQEFRGDYIPHEASIA--------ISQAR---------LDEKIAQRPTWY-KYYGK 133
>d2do8a1 d.310.1.1 (A:1-186) Hypothetical protein HD1794
{Haemophilus ducreyi [TaxId: 730]}
Length = 186
Score = 27.1 bits (59), Expect = 4.0
Identities = 14/133 (10%), Positives = 36/133 (27%), Gaps = 4/133 (3%)
Query: 76 LEKAEQENMQVVINNEKFHYSKDAIAIVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQ 135
E + + V+IN + + + + + D ++ V + +
Sbjct: 29 CEHNDNGTIGVIINTPTDLSVLELLTRMDFQMAKPRI-YTQDQMVLNGGPVNQDRGFIVH 87
Query: 136 DCNHEATTNVIKSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFKIARHYGWALNQMFYEFN 195
T+ K + +KF + W +Q+ E
Sbjct: 88 SKTDHEFTHSYKVTDDITLTTSGDVLDSFGTQTAPEKFIVCLGCS---TWKPHQLEQEIA 144
Query: 196 FSTAIVIEDDLDI 208
+ ++ E +
Sbjct: 145 QNYWLLSEANNQT 157
>d2ew0a1 d.310.1.1 (A:5-179) Hypothetical protein ACIAD0353
{Acinetobacter sp. ADP1 [TaxId: 62977]}
Length = 175
Score = 26.7 bits (58), Expect = 4.0
Identities = 15/122 (12%), Positives = 37/122 (30%), Gaps = 7/122 (5%)
Query: 94 HYSKDAIAIVVIACNRVTVSRCLDLLIKYRPSVEKFPIIVSQDCN-------HEATTNVI 146
H + A I++ + + L+ L +V ++ H
Sbjct: 28 HDEEGAQGIIINRPAGIQIKELLNDLDIDADNVNPHEVLQGGPLRPEAGFVLHTGQPTWH 87
Query: 147 KSYQNQVHLIQQPNQQDIAVPPKEKKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDL 206
S ++ ++ + + Y + W NQ+ E ++ + D+
Sbjct: 88 SSIAVGENVCITTSKDILDAIAHNEGVGRYQIALGYASWGKNQLEDEIARGDWLICDADM 147
Query: 207 DI 208
D+
Sbjct: 148 DL 149
>d2hafa1 d.310.1.1 (A:15-192) Hypothetical protein VC0467 {Vibrio
cholerae [TaxId: 666]}
Length = 178
Score = 26.7 bits (58), Expect = 4.4
Identities = 12/61 (19%), Positives = 27/61 (44%)
Query: 148 SYQNQVHLIQQPNQQDIAVPPKEKKFKGYFKIARHYGWALNQMFYEFNFSTAIVIEDDLD 207
S + + ++ + V E + +GY + GW+ Q+ E ++ + IE D +
Sbjct: 97 SMKMTDDIAVTTSKDILTVLGTEAEPEGYIVALGYSGWSAGQLEVELTENSWLTIEADPE 156
Query: 208 I 208
+
Sbjct: 157 L 157
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
(Loligo pealei) [TaxId: 6621]}
Length = 590
Score = 27.4 bits (60), Expect = 5.3
Identities = 10/104 (9%), Positives = 34/104 (32%), Gaps = 1/104 (0%)
Query: 19 FVSHYVFLGRSNNEFSNNIGDVDKALSDLSADINSELEIHNLMMESVQQSIVQKKRALEK 78
F ++ ++ + K + +++ H + E + Q L K
Sbjct: 306 FADEKRMGTAADKAGIKDLSQMLKKMPQYQKELSK-YSTHLHLAEDCMKQYQQHVDKLCK 364
Query: 79 AEQENMQVVINNEKFHYSKDAIAIVVIACNRVTVSRCLDLLIKY 122
EQ+ + + + ++ +++ + +++ Y
Sbjct: 365 VEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILLY 408
>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO
reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 622
Score = 27.0 bits (58), Expect = 6.5
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 258 FPGLGWMLTKDLWDEISVKWPRSYWDDWIRQPEQRKD 294
F + +D W E V++P + +++R + R+D
Sbjct: 548 FKNVAMPSFEDFWSEGIVEFPITEGANFVRYADFRED 584
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal
domain {Thermoanaerobacterium thermosaccharolyticum
[TaxId: 1517]}
Length = 397
Score = 26.7 bits (58), Expect = 6.5
Identities = 17/89 (19%), Positives = 27/89 (30%)
Query: 199 AIVIEDDLDIAPDFFEYFLGTYPLLISDPTLWCVSAWNDNGKPTLIDTSSSDLLYRTDFF 258
A + D+D A +Y P +S L + + +L
Sbjct: 64 AFIAAGDVDSANRSLDYLAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKR 123
Query: 259 PGLGWMLTKDLWDEISVKWPRSYWDDWIR 287
L L K L D I P++ + W
Sbjct: 124 YDLYDSLVKPLADFIIKIGPKTGQERWEE 152
>d1t11a1 a.223.1.1 (A:248-376) Trigger factor, C-terminal domain
{Vibrio cholerae [TaxId: 666]}
Length = 129
Score = 25.3 bits (55), Expect = 9.6
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 16/108 (14%)
Query: 30 NNEFSNNIGDVDKALSDLSADINSELE-----------IHNLMMESVQQSIVQKKRALEK 78
N+EF G + + L A++ +E + V+++ +Q AL
Sbjct: 2 NDEFVARFGVAEGGVDALKAEVRKNMERELKQAIKARIKEQAIEGLVKENEIQVPSALID 61
Query: 79 AEQENMQVVINNEKFHYSKDAIAIVV-----IACNRVTVSRCLDLLIK 121
E ++ + A + A RV V L +I+
Sbjct: 62 QEINVLRQQAAQRFGGNVEAAAQLPRELFEEQAKRRVVVGLLLGEVIR 109
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 148
Score = 25.5 bits (56), Expect = 9.7
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 188 NQMFYEFNFSTAIVIEDDLDI 208
++ Y FNF I DD+++
Sbjct: 81 DKFEYLFNFDNTFEIHDDIEV 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,823,611
Number of extensions: 88869
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 20
Length of query: 469
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 380
Effective length of database: 1,185,626
Effective search space: 450537880
Effective search space used: 450537880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.6 bits)