RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy705
         (232 letters)



>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 312

 Score = 46.6 bits (110), Expect = 8e-07
 Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 30/162 (18%)

Query: 14  SRLHIIEGDILQANLGIKDSDLL-MLQEEVSVVFNGAASLKLEAELKENVAA---NTRGT 69
            R   +E  I   N  + + D++  L  EV  +++ A+       +   +     NT GT
Sbjct: 37  GRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGT 96

Query: 70  QRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQL 129
             +L +A ++      +  ST+  + D +V                       ++    +
Sbjct: 97  LNMLGLAKRVG--ARLLLASTSEVYGDPEVHP-------------------QSEDYWGHV 135

Query: 130 TPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIV 169
            P  +GP    Y   KR+ ET+   Y  +  + V + R    
Sbjct: 136 NP--IGPR-ACYDEGKRVAETMCYAYMKQEGVEVRVARIFNT 174


>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 363

 Score = 33.8 bits (76), Expect = 0.013
 Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 102 EKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKL 159
           ++ + +  +            + ++K+       P  +++   K  TE L   Y     +
Sbjct: 124 KRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQ-DAFGLEKLATEELCKHYNKDFGI 182

Query: 160 PVVIVRPSIVLPSFQEPVPGW 180
              I R   +   F     G 
Sbjct: 183 ECRIGRFHNIYGPFGTWKGGR 203


>d1f1sa1 a.102.3.2 (A:249-619) Hyaluronate lyase {Streptococcus
           agalactiae [TaxId: 1311]}
          Length = 371

 Score = 27.2 bits (60), Expect = 1.7
 Identities = 5/23 (21%), Positives = 11/23 (47%)

Query: 105 YPSPVSPHDIMRAMEWMDDETIK 127
           + +  S  DI    + ++D T+ 
Sbjct: 346 FNNLKSYSDIANMNKLLNDSTVA 368


>g1or0.1 d.153.1.2 (A:,B:) Cephalosporin acylase {Pseudomonas sp.,
           glutarylamidase [TaxId: 306]}
          Length = 674

 Score = 26.8 bits (58), Expect = 2.8
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 94  HPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTET 150
           +PD  +  +     PVS  D++     + +        + LG   NS+      T  
Sbjct: 111 NPD-DISPDVRQVLPVSGADVVAHAHRLMNFLYVASPGRTLGEGSNSWAVAPGKTAN 166


>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
           {Thiobacillus ferrooxidans [TaxId: 920]}
          Length = 357

 Score = 25.8 bits (56), Expect = 4.3
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 119 EWMDDETIKQ-------LTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLP 171
           + +   +++        +   + GP  ++Y   KR  + L+   K       +RP+ + P
Sbjct: 52  DPLPAASLQLAMAADAVILGAVGGPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFP 111

Query: 172 SFQEPVP 178
              +  P
Sbjct: 112 QLLDASP 118


>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi
           [TaxId: 90370]}
          Length = 338

 Score = 25.5 bits (54), Expect = 5.7
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 7/115 (6%)

Query: 11  AQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELK---ENVAANTR 67
           + L     + GDI   N    D   L+ +      F+ A  + +   +     +   N  
Sbjct: 46  SSLGNFEFVHGDIRNKN----DVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVG 101

Query: 68  GTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMD 122
           GT  LL+   +       I+ ST   + D +  +     +  +  D     +   
Sbjct: 102 GTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDEST 156


>d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 371

 Score = 24.9 bits (54), Expect = 9.4
 Identities = 3/26 (11%), Positives = 9/26 (34%)

Query: 105 YPSPVSPHDIMRAMEWMDDETIKQLT 130
           + +  +  DI      + D  +  + 
Sbjct: 345 FKNLKTYKDISLMQSLLSDAGVASVP 370


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 874,516
Number of extensions: 40995
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 8
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)