Query psy7050
Match_columns 61
No_of_seqs 137 out of 1598
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 16:52:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnm_A SRP46 splicing factor; 99.8 2.2E-19 7.4E-24 86.3 7.6 60 2-61 2-61 (103)
2 4fxv_A ELAV-like protein 1; RN 99.8 1.9E-19 6.6E-24 86.5 7.1 51 11-61 17-67 (99)
3 3s7r_A Heterogeneous nuclear r 99.8 9.2E-19 3.1E-23 81.9 7.5 55 7-61 5-59 (87)
4 2dgs_A DAZ-associated protein 99.8 2.5E-18 8.6E-23 82.1 7.9 56 6-61 3-58 (99)
5 1l3k_A Heterogeneous nuclear r 99.8 1E-18 3.4E-23 90.9 6.9 61 1-61 1-61 (196)
6 3s8s_A Histone-lysine N-methyl 99.8 2E-18 6.8E-23 84.3 7.5 49 13-61 6-54 (110)
7 2lkz_A RNA-binding protein 5; 99.8 6.8E-19 2.3E-23 84.2 5.0 53 9-61 5-59 (95)
8 2la6_A RNA-binding protein FUS 99.8 4.8E-18 1.6E-22 81.2 7.9 58 4-61 4-69 (99)
9 1x5u_A Splicing factor 3B subu 99.8 5E-18 1.7E-22 81.7 7.5 57 5-61 7-63 (105)
10 2m2b_A RNA-binding protein 10; 99.8 1E-18 3.6E-23 87.1 5.2 54 8-61 18-73 (131)
11 2cqg_A TDP-43, TAR DNA-binding 99.8 8.7E-18 3E-22 80.7 8.0 53 9-61 11-63 (103)
12 2lea_A Serine/arginine-rich sp 99.8 6.3E-19 2.1E-23 88.5 4.1 61 1-61 35-95 (135)
13 1x4h_A RNA-binding protein 28; 99.8 7.1E-18 2.4E-22 81.8 7.7 55 7-61 9-63 (111)
14 2dgp_A Bruno-like 4, RNA bindi 99.8 3.9E-18 1.3E-22 82.2 6.7 56 6-61 6-61 (106)
15 2dh8_A DAZ-associated protein 99.8 7.6E-18 2.6E-22 81.1 7.5 54 8-61 11-64 (105)
16 1p27_B RNA-binding protein 8A; 99.8 7.8E-18 2.7E-22 81.1 7.3 53 9-61 19-71 (106)
17 2lxi_A RNA-binding protein 10; 99.8 6.3E-19 2.2E-23 83.5 3.4 48 14-61 2-50 (91)
18 2cq0_A Eukaryotic translation 99.7 7.7E-18 2.6E-22 80.9 6.9 56 6-61 8-63 (103)
19 2cqd_A RNA-binding region cont 99.7 2.1E-17 7.3E-22 80.8 8.4 54 8-61 12-65 (116)
20 1s79_A Lupus LA protein; RRM, 99.7 8E-18 2.7E-22 81.4 6.6 51 10-61 8-58 (103)
21 2dgo_A Cytotoxic granule-assoc 99.7 2E-17 6.7E-22 80.7 8.0 55 7-61 9-63 (115)
22 2div_A TRNA selenocysteine ass 99.7 1.4E-17 4.8E-22 79.4 7.1 52 10-61 6-58 (99)
23 2cph_A RNA binding motif prote 99.7 1.9E-17 6.5E-22 79.8 7.3 55 7-61 9-64 (107)
24 2cqc_A Arginine/serine-rich sp 99.7 2E-17 6.9E-22 78.2 7.2 54 8-61 10-63 (95)
25 1oo0_B CG8781-PA, drosophila Y 99.7 1.7E-17 5.9E-22 80.4 7.0 54 8-61 21-74 (110)
26 2rs2_A Musashi-1, RNA-binding 99.7 7.8E-18 2.7E-22 81.9 5.8 53 9-61 21-73 (109)
27 2khc_A Testis-specific RNP-typ 99.7 2.2E-17 7.7E-22 80.8 7.5 52 10-61 37-88 (118)
28 2e5h_A Zinc finger CCHC-type a 99.7 2.1E-17 7.1E-22 78.1 7.1 54 8-61 11-64 (94)
29 1whw_A Hypothetical protein ri 99.7 2.6E-17 8.9E-22 78.5 7.3 52 10-61 5-56 (99)
30 1x5s_A Cold-inducible RNA-bind 99.7 2.4E-17 8.2E-22 79.0 7.0 54 8-61 7-60 (102)
31 3n9u_C Cleavage and polyadenyl 99.7 1.8E-17 6.1E-22 85.0 7.0 50 12-61 54-105 (156)
32 1x4e_A RNA binding motif, sing 99.7 1.8E-17 6.1E-22 77.2 6.3 51 11-61 3-53 (85)
33 2cpz_A CUG triplet repeat RNA- 99.7 2.3E-17 8E-22 80.5 7.0 53 9-61 21-73 (115)
34 1wg5_A Heterogeneous nuclear r 99.7 2.9E-17 1E-21 79.2 7.3 52 9-61 11-63 (104)
35 2jrs_A RNA-binding protein 39; 99.7 2.2E-17 7.7E-22 80.2 6.9 54 8-61 21-74 (108)
36 2xs2_A Deleted in azoospermia- 99.7 1.2E-17 4.2E-22 80.0 5.9 52 9-61 5-56 (102)
37 3p5t_L Cleavage and polyadenyl 99.7 9.3E-18 3.2E-22 79.1 5.2 48 14-61 2-51 (90)
38 1wi8_A EIF-4B, eukaryotic tran 99.7 2.9E-17 1E-21 79.0 7.0 54 7-61 9-63 (104)
39 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2E-17 6.7E-22 79.2 6.4 53 9-61 8-60 (102)
40 2dng_A Eukaryotic translation 99.7 5.5E-17 1.9E-21 77.9 7.8 52 9-61 11-62 (103)
41 4f02_A Polyadenylate-binding p 99.7 2.4E-17 8.2E-22 87.4 7.1 51 11-61 13-63 (213)
42 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.9E-17 1.3E-21 76.2 6.9 50 12-61 5-54 (87)
43 2dnh_A Bruno-like 5, RNA bindi 99.7 8E-17 2.7E-21 77.4 8.1 51 10-61 12-62 (105)
44 2dnz_A Probable RNA-binding pr 99.7 5.5E-17 1.9E-21 76.8 7.4 50 12-61 4-53 (95)
45 2dhg_A TRNA selenocysteine ass 99.7 5.9E-17 2E-21 77.8 7.6 52 9-61 5-57 (104)
46 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.1E-17 1.1E-21 76.2 6.3 51 11-61 5-55 (85)
47 3ns6_A Eukaryotic translation 99.7 4.6E-18 1.6E-22 81.6 3.5 50 12-61 5-60 (100)
48 1x4b_A Heterogeneous nuclear r 99.7 6.8E-18 2.3E-22 82.5 4.2 49 13-61 27-75 (116)
49 3md1_A Nuclear and cytoplasmic 99.7 5.2E-17 1.8E-21 75.2 6.9 48 14-61 2-49 (83)
50 2kxn_B Transformer-2 protein h 99.7 4E-17 1.4E-21 81.5 6.8 53 9-61 42-94 (129)
51 2ywk_A Putative RNA-binding pr 99.7 5.1E-17 1.7E-21 76.9 6.9 54 7-61 10-63 (95)
52 2dnn_A RNA-binding protein 12; 99.7 1.6E-17 5.6E-22 81.0 5.3 57 3-61 6-62 (109)
53 2j8a_A Histone-lysine N-methyl 99.7 2.5E-17 8.4E-22 82.5 6.0 48 14-61 3-54 (136)
54 3ex7_B RNA-binding protein 8A; 99.7 5.6E-17 1.9E-21 80.1 6.9 53 9-61 18-70 (126)
55 3ulh_A THO complex subunit 4; 99.7 9.1E-17 3.1E-21 77.5 7.5 53 8-61 24-76 (107)
56 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.7E-17 5.9E-22 75.9 4.6 48 14-61 1-48 (77)
57 3ucg_A Polyadenylate-binding p 99.7 7.8E-17 2.7E-21 75.4 6.9 49 13-61 6-54 (89)
58 2cq4_A RNA binding motif prote 99.7 2.1E-17 7E-22 80.6 5.0 49 13-61 25-73 (114)
59 1u6f_A Tcubp1, RNA-binding pro 99.7 6.1E-17 2.1E-21 81.1 6.8 53 9-61 38-90 (139)
60 2do4_A Squamous cell carcinoma 99.7 1.7E-16 5.9E-21 75.8 8.0 51 10-61 14-64 (100)
61 1wez_A HnRNP H', FTP-3, hetero 99.7 6.9E-17 2.3E-21 77.8 6.5 51 9-61 11-61 (102)
62 2x1f_A MRNA 3'-END-processing 99.7 9.5E-17 3.3E-21 76.2 6.9 49 13-61 2-50 (96)
63 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.6E-16 5.4E-21 79.4 8.0 52 10-61 60-111 (140)
64 2nlw_A Eukaryotic translation 99.7 1.2E-16 4.1E-21 77.1 7.0 55 5-61 7-67 (105)
65 2cpy_A RNA-binding protein 12; 99.7 4.4E-17 1.5E-21 79.6 5.5 51 10-61 12-63 (114)
66 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.4E-16 4.7E-21 82.0 7.5 53 9-61 68-120 (165)
67 2hgm_A HNRPF protein, heteroge 99.7 1.2E-16 3.9E-21 79.8 7.0 51 9-61 38-90 (126)
68 2dnl_A Cytoplasmic polyadenyla 99.7 6.8E-17 2.3E-21 79.0 6.1 51 10-61 5-58 (114)
69 2cpe_A RNA-binding protein EWS 99.7 8E-17 2.7E-21 78.3 6.2 53 9-61 11-71 (113)
70 2mss_A Protein (musashi1); RNA 99.7 3.8E-17 1.3E-21 74.5 4.6 47 15-61 1-47 (75)
71 2fy1_A RNA-binding motif prote 99.7 1.1E-16 3.9E-21 78.5 6.5 52 9-61 3-54 (116)
72 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.4E-16 8.2E-21 80.3 7.9 51 11-61 37-87 (156)
73 3q2s_C Cleavage and polyadenyl 99.7 1.2E-16 4E-21 86.0 7.0 50 12-61 67-118 (229)
74 1x5t_A Splicing factor 3B subu 99.7 6.6E-17 2.3E-21 76.6 5.4 50 12-61 4-54 (96)
75 1x5o_A RNA binding motif, sing 99.7 2.7E-16 9.4E-21 76.5 7.7 51 10-61 22-72 (114)
76 2dgw_A Probable RNA-binding pr 99.7 2.5E-16 8.5E-21 74.1 7.2 54 6-61 3-56 (91)
77 2do0_A HnRNP M, heterogeneous 99.7 3.6E-16 1.2E-20 76.1 7.8 53 8-61 10-62 (114)
78 2d9p_A Polyadenylate-binding p 99.7 2.4E-16 8.2E-21 75.6 7.1 51 9-61 11-61 (103)
79 1iqt_A AUF1, heterogeneous nuc 99.7 2.7E-17 9.2E-22 75.0 3.6 47 15-61 1-47 (75)
80 2hgl_A HNRPF protein, heteroge 99.7 7.6E-17 2.6E-21 81.2 5.4 52 9-61 40-94 (136)
81 2kn4_A Immunoglobulin G-bindin 99.7 2.1E-16 7.2E-21 80.5 7.2 51 11-61 68-118 (158)
82 2cpf_A RNA binding motif prote 99.7 1E-16 3.4E-21 76.3 5.6 51 11-61 3-56 (98)
83 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.4E-17 1.2E-21 78.4 3.9 52 9-61 15-67 (100)
84 1p1t_A Cleavage stimulation fa 99.7 2E-17 7E-22 79.4 3.1 51 11-61 6-56 (104)
85 2lmi_A GRSF-1, G-rich sequence 99.7 5.9E-17 2E-21 78.5 4.6 53 8-61 6-61 (107)
86 1wel_A RNA-binding protein 12; 99.7 4.6E-17 1.6E-21 80.5 4.0 52 10-61 22-73 (124)
87 2dis_A Unnamed protein product 99.7 2.8E-16 9.5E-21 76.0 6.7 50 12-61 7-58 (109)
88 2kt5_A RNA and export factor-b 99.7 2.5E-16 8.6E-21 77.7 6.7 52 9-61 31-82 (124)
89 2db1_A Heterogeneous nuclear r 99.7 1.3E-16 4.4E-21 78.5 5.4 52 9-61 13-67 (118)
90 2cjk_A Nuclear polyadenylated 99.7 1.5E-16 5E-21 81.0 5.7 50 12-61 2-51 (167)
91 2cq3_A RNA-binding protein 9; 99.7 9.5E-16 3.2E-20 73.5 8.1 52 8-61 10-61 (103)
92 4f25_A Polyadenylate-binding p 99.7 2.2E-16 7.7E-21 77.2 6.0 47 13-61 5-51 (115)
93 2ki2_A SS-DNA binding protein 99.7 4.2E-17 1.4E-21 76.6 3.3 48 14-61 2-49 (90)
94 2cqp_A RNA-binding protein 12; 99.7 7.9E-17 2.7E-21 76.6 4.3 52 10-61 12-63 (98)
95 2jwn_A Embryonic polyadenylate 99.7 2.2E-16 7.5E-21 77.8 6.0 49 13-61 36-84 (124)
96 3d2w_A TAR DNA-binding protein 99.7 2.7E-16 9.2E-21 74.2 6.0 46 11-61 9-54 (89)
97 2dgv_A HnRNP M, heterogeneous 99.7 7.5E-16 2.6E-20 72.5 7.4 51 9-61 4-54 (92)
98 1sjq_A Polypyrimidine tract-bi 99.7 2.9E-16 1E-20 76.3 6.0 45 11-61 14-58 (105)
99 2cqi_A Nucleolysin TIAR; RNA r 99.7 8.8E-16 3E-20 73.6 7.6 52 8-61 10-61 (103)
100 2dha_A FLJ20171 protein; RRM d 99.7 3.3E-16 1.1E-20 77.8 5.6 50 11-61 21-74 (123)
101 4a8x_A RNA-binding protein wit 99.6 3.3E-16 1.1E-20 73.1 5.1 50 12-61 3-53 (88)
102 2krb_A Eukaryotic translation 99.6 4.7E-16 1.6E-20 71.9 5.4 46 14-61 2-53 (81)
103 2ek1_A RNA-binding protein 12; 99.6 1.1E-16 3.7E-21 75.8 3.3 51 11-61 13-63 (95)
104 3nmr_A Cugbp ELAV-like family 99.6 8.3E-16 2.8E-20 78.5 6.3 50 12-61 2-53 (175)
105 2err_A Ataxin-2-binding protei 99.6 8.9E-16 3E-20 74.5 5.9 52 8-61 24-75 (109)
106 2dgx_A KIAA0430 protein; RRM d 99.6 1.4E-15 4.8E-20 72.3 6.4 49 10-61 6-58 (96)
107 2hgn_A Heterogeneous nuclear r 99.6 2.1E-16 7.1E-21 79.9 3.6 50 10-61 43-92 (139)
108 2ad9_A Polypyrimidine tract-bi 99.6 1.7E-15 5.7E-20 75.0 6.3 46 10-61 28-73 (119)
109 1fxl_A Paraneoplastic encephal 99.6 3.3E-15 1.1E-19 75.8 7.1 49 13-61 2-50 (167)
110 1x4a_A Splicing factor, argini 99.6 5.1E-15 1.7E-19 71.6 7.4 50 9-61 18-67 (109)
111 2f3j_A RNA and export factor b 99.6 2E-15 7E-20 78.6 6.3 50 11-61 86-135 (177)
112 1wex_A Hypothetical protein (r 99.6 4.5E-15 1.5E-19 71.8 7.1 47 9-61 11-57 (104)
113 2cq1_A PTB-like protein L; RRM 99.6 3.2E-15 1.1E-19 72.0 6.3 46 10-61 12-57 (101)
114 1b7f_A Protein (SXL-lethal pro 99.6 2E-15 6.9E-20 76.8 5.8 49 13-61 3-51 (168)
115 3md3_A Nuclear and cytoplasmic 99.6 1.3E-14 4.4E-19 73.5 8.4 53 9-61 83-135 (166)
116 3pgw_S U1-70K; protein-RNA com 99.6 4.4E-15 1.5E-19 85.8 7.4 51 11-61 100-150 (437)
117 1x4c_A Splicing factor, argini 99.6 8.2E-15 2.8E-19 70.9 7.3 47 8-61 10-56 (108)
118 1wf0_A TDP-43, TAR DNA-binding 99.6 1.7E-15 5.8E-20 70.9 4.5 45 12-61 4-48 (88)
119 1l3k_A Heterogeneous nuclear r 99.6 7.3E-15 2.5E-19 76.3 7.1 50 12-61 103-152 (196)
120 2cpi_A CCR4-NOT transcription 99.6 3.9E-15 1.3E-19 72.4 5.7 53 9-61 11-69 (111)
121 2g4b_A Splicing factor U2AF 65 99.6 1.4E-14 4.7E-19 74.0 8.0 51 11-61 92-142 (172)
122 2lcw_A RNA-binding protein FUS 99.4 1E-16 3.5E-21 78.4 0.0 52 10-61 4-63 (116)
123 3r27_A HnRNP L, heterogeneous 99.6 7.7E-15 2.7E-19 70.7 6.6 45 11-61 19-63 (100)
124 2a3j_A U1 small nuclear ribonu 99.6 8.1E-15 2.8E-19 73.1 6.7 50 9-61 25-78 (127)
125 1x4d_A Matrin 3; structural ge 99.6 4.6E-15 1.6E-19 71.7 5.6 46 10-61 12-58 (102)
126 2qfj_A FBP-interacting repress 99.6 6.8E-15 2.3E-19 77.3 6.7 49 13-61 28-76 (216)
127 2ytc_A PRE-mRNA-splicing facto 99.6 1.2E-14 4.2E-19 67.4 6.7 50 6-61 5-54 (85)
128 2fc9_A NCL protein; structure 99.6 9.3E-15 3.2E-19 69.8 6.3 49 9-61 11-59 (101)
129 1b7f_A Protein (SXL-lethal pro 99.6 2.1E-14 7.1E-19 73.0 7.9 57 5-61 81-137 (168)
130 1fxl_A Paraneoplastic encephal 99.6 1.6E-14 5.6E-19 73.2 7.1 56 6-61 81-136 (167)
131 1fj7_A Nucleolin RBD1, protein 99.6 2E-16 6.7E-21 75.7 -0.2 50 11-61 15-64 (101)
132 2fc8_A NCL protein; structure 99.6 1.7E-14 5.8E-19 68.9 6.4 52 7-61 9-60 (102)
133 2yh0_A Splicing factor U2AF 65 99.6 3.6E-14 1.2E-18 73.7 7.9 51 11-61 112-162 (198)
134 3lqv_A PRE-mRNA branch site pr 99.6 2.1E-14 7E-19 69.9 6.5 48 11-61 6-53 (115)
135 2cpx_A Hypothetical protein FL 99.5 1.3E-15 4.3E-20 74.2 1.9 52 10-61 22-73 (115)
136 2voo_A Lupus LA protein; RNA-b 99.5 3E-14 1E-18 75.0 6.8 48 13-61 109-156 (193)
137 1x4f_A Matrin 3; structural ge 99.5 1.4E-14 4.6E-19 71.0 5.1 46 10-61 22-68 (112)
138 2qfj_A FBP-interacting repress 99.5 4.1E-14 1.4E-18 74.3 7.3 51 11-61 123-173 (216)
139 1why_A Hypothetical protein ri 99.5 4.8E-14 1.6E-18 66.9 6.6 46 10-61 14-59 (97)
140 2wbr_A GW182, gawky, LD47780P; 99.5 2E-14 6.7E-19 67.9 5.1 45 11-61 5-49 (89)
141 2cjk_A Nuclear polyadenylated 99.5 1.3E-14 4.3E-19 73.8 4.8 50 12-61 86-135 (167)
142 2i2y_A Fusion protein consists 99.5 3.3E-14 1.1E-18 72.0 6.1 48 9-61 69-116 (150)
143 1nu4_A U1A RNA binding domain; 99.5 6.5E-15 2.2E-19 69.8 3.3 50 9-61 4-57 (97)
144 3md3_A Nuclear and cytoplasmic 99.5 3.3E-14 1.1E-18 72.0 5.7 47 14-61 1-47 (166)
145 2cpj_A Non-POU domain-containi 99.5 5.5E-14 1.9E-18 66.9 6.1 47 9-61 11-57 (99)
146 2dnq_A RNA-binding protein 4B; 99.5 7.4E-14 2.5E-18 65.5 6.4 44 10-61 5-48 (90)
147 2dgt_A RNA-binding protein 30; 99.5 9E-14 3.1E-18 65.4 6.6 49 5-61 2-50 (92)
148 3beg_B Splicing factor, argini 99.5 2.1E-14 7.1E-19 70.2 4.5 45 10-61 13-57 (115)
149 2e5g_A U6 snRNA-specific termi 99.5 1.5E-13 5.1E-18 64.9 7.3 47 10-61 5-51 (94)
150 2hvz_A Splicing factor, argini 99.5 3.4E-14 1.2E-18 67.8 4.8 43 14-61 1-43 (101)
151 3nmr_A Cugbp ELAV-like family 99.5 8.5E-14 2.9E-18 71.0 6.5 49 12-61 94-142 (175)
152 2la4_A Nuclear and cytoplasmic 99.5 7.1E-14 2.4E-18 66.7 5.8 44 12-61 26-69 (101)
153 2jvr_A Nucleolar protein 3; RN 99.5 3.2E-14 1.1E-18 69.6 4.6 47 11-61 26-73 (111)
154 1x4g_A Nucleolysin TIAR; struc 99.5 7.8E-14 2.7E-18 67.4 5.9 46 10-61 22-67 (109)
155 2dgu_A Heterogeneous nuclear r 99.5 1.3E-13 4.3E-18 66.1 6.2 46 8-61 6-51 (103)
156 2jvo_A Nucleolar protein 3; nu 99.5 7.1E-14 2.4E-18 67.8 5.2 44 10-61 28-71 (108)
157 1whx_A Hypothetical protein ri 99.5 3.4E-14 1.2E-18 69.2 4.1 44 12-61 9-52 (111)
158 2e5j_A Methenyltetrahydrofolat 99.5 9.6E-14 3.3E-18 65.9 5.5 47 10-61 16-62 (97)
159 3smz_A Protein raver-1, ribonu 99.5 3.1E-13 1.1E-17 73.7 7.6 50 12-61 94-143 (284)
160 2xnq_A Nuclear polyadenylated 99.5 2.8E-13 9.6E-18 64.5 6.5 44 10-61 19-63 (97)
161 1fjc_A Nucleolin RBD2, protein 99.5 3.3E-14 1.1E-18 67.2 3.1 47 10-61 13-59 (96)
162 3pgw_A U1-A; protein-RNA compl 99.5 2.8E-13 9.4E-18 73.8 7.1 50 9-61 5-58 (282)
163 3egn_A RNA-binding protein 40; 99.5 9.1E-15 3.1E-19 73.6 1.1 52 10-61 42-98 (143)
164 1wf1_A RNA-binding protein RAL 99.5 2.6E-13 8.8E-18 65.7 6.1 42 12-61 26-68 (110)
165 2kvi_A Nuclear polyadenylated 99.4 1.7E-13 6E-18 64.9 5.0 44 10-61 7-51 (96)
166 2e44_A Insulin-like growth fac 99.4 2.1E-13 7.1E-18 64.5 5.2 48 10-61 12-60 (96)
167 3sde_A Paraspeckle component 1 99.4 4.8E-13 1.6E-17 72.6 7.1 49 12-61 95-143 (261)
168 1sjr_A Polypyrimidine tract-bi 99.4 3.8E-13 1.3E-17 69.6 6.2 48 10-61 43-90 (164)
169 2cq2_A Hypothetical protein LO 99.4 2E-13 7E-18 67.0 4.8 45 11-61 23-69 (114)
170 2dnp_A RNA-binding protein 14; 99.4 5.2E-13 1.8E-17 62.6 6.0 45 9-61 5-49 (90)
171 2adc_A Polypyrimidine tract-bi 99.4 3.5E-13 1.2E-17 72.0 5.5 48 9-61 30-78 (229)
172 2hzc_A Splicing factor U2AF 65 99.4 5.5E-13 1.9E-17 61.9 5.5 45 11-61 4-59 (87)
173 4f02_A Polyadenylate-binding p 99.4 8.4E-13 2.9E-17 69.9 6.1 48 12-61 102-149 (213)
174 3tyt_A Heterogeneous nuclear r 99.4 7.3E-13 2.5E-17 70.2 5.9 45 12-61 3-48 (205)
175 2cqh_A IGF-II mRNA-binding pro 99.4 3.4E-13 1.2E-17 63.5 4.1 45 10-61 5-50 (93)
176 2cpd_A Apobec-1 stimulating pr 99.4 2.7E-12 9.4E-17 61.0 7.3 43 11-61 13-57 (99)
177 2ghp_A U4/U6 snRNA-associated 99.4 7.2E-13 2.5E-17 72.5 5.8 50 10-61 38-87 (292)
178 2ghp_A U4/U6 snRNA-associated 99.4 1.1E-12 3.9E-17 71.7 6.3 51 11-61 208-260 (292)
179 1wg1_A KIAA1579 protein, homol 99.4 9.1E-13 3.1E-17 61.6 4.6 43 12-61 4-46 (88)
180 3tyt_A Heterogeneous nuclear r 99.4 1.1E-12 3.8E-17 69.5 5.0 47 13-61 123-171 (205)
181 1x5p_A Negative elongation fac 99.3 6.1E-12 2.1E-16 59.6 6.5 44 10-61 12-55 (97)
182 3smz_A Protein raver-1, ribonu 99.3 5.3E-12 1.8E-16 68.8 6.6 51 10-61 181-232 (284)
183 1fje_B Nucleolin RBD12, protei 99.3 8.8E-14 3E-18 71.3 -0.5 52 9-61 9-60 (175)
184 1fje_B Nucleolin RBD12, protei 99.3 5.5E-12 1.9E-16 64.5 6.1 47 10-61 96-142 (175)
185 3zzy_A Polypyrimidine tract-bi 99.3 5E-12 1.7E-16 63.3 5.8 46 11-61 26-72 (130)
186 2e5i_A Heterogeneous nuclear r 99.3 1.4E-11 4.8E-16 61.2 6.9 42 14-61 26-68 (124)
187 3sde_A Paraspeckle component 1 99.3 5.9E-12 2E-16 68.3 5.7 45 11-61 20-64 (261)
188 1qm9_A Polypyrimidine tract-bi 99.3 2.9E-12 1E-16 66.7 4.3 44 13-61 3-47 (198)
189 3pgw_A U1-A; protein-RNA compl 99.3 2.4E-11 8.1E-16 66.2 7.2 45 12-61 206-250 (282)
190 3u1l_A PRE-mRNA-splicing facto 99.3 6.2E-12 2.1E-16 68.3 4.8 46 10-61 131-185 (240)
191 3tht_A Alkylated DNA repair pr 99.2 1.8E-11 6.3E-16 69.2 5.2 45 11-61 16-62 (345)
192 2bz2_A Negative elongation fac 99.2 1.9E-11 6.4E-16 60.3 4.7 44 10-61 36-79 (121)
193 2pe8_A Splicing factor 45; RRM 99.2 1.4E-10 4.7E-15 56.1 6.5 50 12-61 7-62 (105)
194 2g4b_A Splicing factor U2AF 65 99.2 8.4E-11 2.9E-15 59.8 5.3 44 12-61 3-57 (172)
195 2yh0_A Splicing factor U2AF 65 99.1 1.2E-10 4E-15 60.4 5.2 44 12-61 3-57 (198)
196 2diu_A KIAA0430 protein; struc 99.1 2.2E-10 7.4E-15 54.7 5.6 39 13-61 8-52 (96)
197 1qm9_A Polypyrimidine tract-bi 99.1 2.2E-10 7.7E-15 59.6 5.4 44 13-61 120-164 (198)
198 2adc_A Polypyrimidine tract-bi 99.1 3.5E-10 1.2E-14 60.3 5.9 44 13-61 151-195 (229)
199 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.9E-09 6.6E-14 51.7 7.6 45 12-61 9-60 (100)
200 1owx_A Lupus LA protein, SS-B, 99.0 1.9E-09 6.4E-14 53.4 5.8 42 9-50 14-56 (121)
201 2dit_A HIV TAT specific factor 99.0 3.1E-09 1.1E-13 51.4 6.3 49 9-61 11-70 (112)
202 1jmt_A Splicing factor U2AF 35 98.9 4.5E-10 1.6E-14 54.1 1.1 43 18-61 20-74 (104)
203 3v4m_A Splicing factor U2AF 65 98.8 1.5E-08 5.3E-13 48.8 4.5 49 13-61 5-65 (105)
204 3ue2_A Poly(U)-binding-splicin 98.7 3.9E-08 1.3E-12 48.3 4.5 49 13-61 20-77 (118)
205 3s6e_A RNA-binding protein 39; 98.1 3.3E-06 1.1E-10 41.2 2.8 45 13-61 7-61 (114)
206 3dxb_A Thioredoxin N-terminall 97.8 4.3E-05 1.5E-09 40.4 4.8 36 26-61 142-181 (222)
207 2dnr_A Synaptojanin-1; RRM dom 97.1 0.0022 7.4E-08 30.2 4.9 36 14-49 8-51 (91)
208 1whv_A Poly(A)-specific ribonu 96.9 0.0061 2.1E-07 29.1 5.6 37 10-48 13-49 (100)
209 3ctr_A Poly(A)-specific ribonu 96.5 0.012 4E-07 28.2 5.0 32 15-48 8-39 (101)
210 1ufw_A Synaptojanin 2; RNP dom 96.2 0.0077 2.6E-07 28.6 3.4 36 14-49 16-60 (95)
211 1uw4_A UPF3X; nonsense mediate 96.2 0.031 1.1E-06 26.2 5.7 35 14-48 2-36 (91)
212 2l9w_A U4/U6 snRNA-associated- 96.0 0.024 8.3E-07 27.7 4.6 37 12-48 20-61 (117)
213 3pq1_A Poly(A) RNA polymerase; 95.5 0.014 4.9E-07 34.5 3.2 43 13-61 53-95 (464)
214 2dhx_A Poly (ADP-ribose) polym 92.5 0.45 1.5E-05 22.9 6.1 35 11-45 6-45 (104)
215 2l08_A Regulator of nonsense t 92.3 0.067 2.3E-06 25.4 1.4 27 13-39 9-35 (97)
216 3d45_A Poly(A)-specific ribonu 82.1 6.2 0.00021 23.7 6.5 35 12-48 439-473 (507)
217 1wwh_A Nucleoporin 35, nucleop 79.9 3.6 0.00012 20.2 3.6 34 11-45 22-55 (119)
218 3fut_A Dimethyladenosine trans 77.5 4.5 0.00015 22.2 3.9 34 14-48 111-144 (271)
219 1wey_A Calcipressin 1; structu 76.9 4.1 0.00014 19.5 3.2 36 11-46 3-43 (104)
220 3uzu_A Ribosomal RNA small sub 70.3 1.8 6.3E-05 23.8 1.2 36 14-49 115-150 (279)
221 1qyr_A KSGA, high level kasuga 63.5 9.2 0.00031 20.6 3.1 32 15-46 92-123 (252)
222 3tqs_A Ribosomal RNA small sub 62.5 2.2 7.6E-05 23.1 0.6 34 16-49 99-132 (255)
223 3ftd_A Dimethyladenosine trans 58.6 8 0.00027 20.8 2.3 33 15-47 97-129 (249)
224 3ts2_A Protein LIN-28 homolog 57.3 1.1 3.9E-05 22.5 -1.0 8 54-61 20-27 (148)
225 2ytv_A Cold shock domain-conta 56.1 4.8 0.00017 18.1 1.0 8 54-61 17-24 (79)
226 1i4w_A Mitochondrial replicati 55.7 11 0.00037 21.7 2.6 22 15-36 144-165 (353)
227 3mfb_A Uncharacterized protein 53.0 22 0.00076 18.2 5.2 36 25-60 3-41 (157)
228 1h95_A CSD, Y-box binding prot 51.1 4.4 0.00015 18.2 0.5 8 54-61 19-26 (79)
229 3ulj_A LIN28B, DNA-binding pro 50.8 4.4 0.00015 18.8 0.5 8 54-61 19-26 (90)
230 3i2z_B RNA chaperone, negative 47.8 5.3 0.00018 17.5 0.5 8 54-61 16-23 (71)
231 2lss_A Cold shock-like protein 52.0 4.2 0.00014 17.7 0.0 8 54-61 15-22 (70)
232 2yty_A Cold shock domain-conta 46.1 6.6 0.00023 18.0 0.6 7 55-61 28-34 (88)
233 2ytx_A Cold shock domain-conta 45.5 6.8 0.00023 18.3 0.6 8 54-61 27-34 (97)
234 1wfq_A UNR protein; beta-barre 45.0 7 0.00024 18.0 0.6 7 55-61 28-34 (89)
235 4aj5_1 SKA3, spindle and kinet 42.5 13 0.00044 17.7 1.3 11 28-38 91-101 (101)
236 3aqq_A Calcium-regulated heat 40.2 7.9 0.00027 19.6 0.5 8 54-61 73-80 (147)
237 1eij_A Hypothetical protein MT 38.9 30 0.001 15.7 2.4 19 19-37 50-68 (80)
238 2jsh_A Appetite-regulating hor 37.8 13 0.00045 13.2 0.8 21 20-40 2-22 (26)
239 1x65_A UNR protein; cell-free 36.4 5.5 0.00019 18.4 -0.5 7 55-61 18-24 (89)
240 1wvq_A Hypothetical protein PA 34.1 52 0.0018 17.0 4.5 31 9-39 14-44 (167)
241 2ekm_A Hypothetical protein ST 34.0 52 0.0018 17.0 4.4 31 9-39 11-41 (162)
242 1vgg_A Conserved hypothetical 33.4 53 0.0018 16.9 3.4 29 9-37 9-37 (161)
243 3p3d_A Nucleoporin 53; structu 33.1 33 0.0011 17.1 2.0 28 14-42 8-35 (132)
244 1ytr_A Bacteriocin plantaricin 32.2 22 0.00076 12.2 1.4 12 27-38 14-25 (26)
245 2fh0_A Hypothetical 16.0 kDa p 31.6 38 0.0013 15.4 2.0 19 19-37 48-66 (81)
246 3l3e_A DNA topoisomerase 2-bin 31.5 39 0.0013 15.4 2.1 29 11-40 16-44 (107)
247 1rlh_A Conserved hypothetical 31.2 60 0.0021 16.9 3.9 30 9-38 22-51 (173)
248 2rd7_A Complement component C8 31.0 52 0.0018 18.8 2.9 20 20-39 195-214 (367)
249 2nn4_A Hypothetical protein YQ 28.5 42 0.0014 14.9 1.8 17 26-42 4-20 (72)
250 3pc6_A DNA repair protein XRCC 27.9 55 0.0019 15.3 3.3 29 12-40 9-37 (104)
251 2cs4_A Protein C12ORF2; GTP bi 27.2 41 0.0014 15.8 1.7 22 18-39 21-43 (95)
252 4id3_A DNA repair protein REV1 26.9 48 0.0016 14.4 3.8 29 11-40 8-36 (92)
253 2q2k_A Hypothetical protein; p 25.3 14 0.00047 15.7 -0.1 20 18-37 43-62 (70)
254 1hdj_A Human HSP40, HDJ-1; mol 25.3 50 0.0017 14.1 2.3 18 19-36 9-26 (77)
255 2ctp_A DNAJ homolog subfamily 25.2 51 0.0017 14.1 2.3 19 18-36 12-30 (78)
256 1wf6_A Similar to S.pombe -RAD 24.6 68 0.0023 15.3 2.5 28 11-39 41-68 (132)
257 2rf4_B DNA-directed RNA polyme 24.2 64 0.0022 14.9 2.6 29 9-37 15-43 (87)
258 2bh8_A 1B11; transcription, mo 23.9 23 0.0008 16.4 0.5 8 54-61 27-34 (101)
259 2dn9_A DNAJ homolog subfamily 23.9 55 0.0019 14.0 2.3 19 18-36 12-30 (79)
260 2och_A Hypothetical protein DN 23.4 55 0.0019 13.8 2.3 19 18-36 13-31 (73)
261 3ojy_B Complement component C8 23.0 91 0.0031 19.0 3.0 20 20-39 269-288 (537)
262 2cru_A Programmed cell death p 22.9 63 0.0022 15.7 2.0 20 19-38 80-99 (118)
263 3ojy_A Complement component C8 22.8 87 0.003 19.2 2.9 20 20-39 290-309 (554)
264 2od0_A Hypothetical protein VP 22.3 61 0.0021 14.9 1.8 18 26-43 5-22 (105)
265 2ctr_A DNAJ homolog subfamily 21.7 66 0.0023 14.2 2.3 18 19-36 13-30 (88)
266 2cug_A Mkiaa0962 protein; DNAJ 21.5 67 0.0023 14.2 2.3 19 18-36 22-40 (88)
267 2g1d_A 30S ribosomal protein S 21.5 47 0.0016 15.6 1.3 37 24-60 30-71 (98)
268 2jxn_A Uncharacterized protein 20.8 78 0.0027 15.6 2.1 19 19-37 83-101 (127)
269 2yua_A Williams-beuren syndrom 20.6 75 0.0026 14.4 2.3 19 18-36 22-40 (99)
270 2ej7_A HCG3 gene; HCG3 protein 20.5 68 0.0023 13.8 2.3 19 18-36 14-32 (82)
271 2d8m_A DNA-repair protein XRCC 20.2 86 0.003 14.9 2.9 28 12-40 24-51 (129)
272 2kwp_A Transcription elongatio 20.1 92 0.0032 15.2 2.3 24 36-59 38-61 (129)
No 1
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=86.33 Aligned_cols=60 Identities=65% Similarity=1.169 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 2 ~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
++++++++.+..++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 2 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 61 (103)
T 2dnm_A 2 SSGSSGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVR 61 (103)
T ss_dssp CCCCCSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEE
T ss_pred CCCCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEE
Confidence 467777788888999999999999999999999999999999999999999999999985
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=86.46 Aligned_cols=51 Identities=33% Similarity=0.473 Sum_probs=48.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
-++++|||+|||+++++++|+++|++||.|.++.+++|+.+|+++|||||+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~ 67 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 67 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEE
Confidence 356899999999999999999999999999999999999999999999985
No 3
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=9.2e-19 Score=81.91 Aligned_cols=55 Identities=35% Similarity=0.472 Sum_probs=49.7
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+.+....++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 59 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFIL 59 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEE
Confidence 3445667999999999999999999999999999999999999999999999985
No 4
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-18 Score=82.07 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=51.0
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 6 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
++.+....++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 3 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 58 (99)
T 2dgs_A 3 SGSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFIT 58 (99)
T ss_dssp CCCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEE
Confidence 34455667999999999999999999999999999999999999999999999985
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=1e-18 Score=90.92 Aligned_cols=61 Identities=38% Similarity=0.585 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 1 m~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
|+.+.++.+.+..++|||+|||+++++++|+++|+.||.|.++.++.++.++.++|||||+
T Consensus 1 ms~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 61 (196)
T 1l3k_A 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61 (196)
T ss_dssp -------CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCcccCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEE
Confidence 6767777777888999999999999999999999999999999999999999999999995
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=84.27 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=47.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.++|||+|||+.+++++|+++|++||.|.++.++.|+.|++++|||||+
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~ 54 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVL 54 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEE
Confidence 4899999999999999999999999999999999999999999999995
No 7
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=6.8e-19 Score=84.17 Aligned_cols=53 Identities=26% Similarity=0.446 Sum_probs=47.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCC--eEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGE--VGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~--i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....-.+|||+|||+.+++++|+++|++||. +.++++++|+.||+++|||||+
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~ 59 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQ 59 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEE
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEE
Confidence 3455689999999999999999999999995 6789999999999999999995
No 8
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=4.8e-18 Score=81.16 Aligned_cols=58 Identities=21% Similarity=0.174 Sum_probs=52.0
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEE--------EEEccCCCCCCceeEEEEC
Q psy7050 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD--------IYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 4 ~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~t~~~~g~~fv~ 61 (61)
..++......++|||+|||+++++++|+++|++||.|.. +.++.++.+|+++|||||+
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~ 69 (99)
T 2la6_A 4 HHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVS 69 (99)
T ss_dssp SCSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEE
Confidence 344555666799999999999999999999999999999 9999999999999999985
No 9
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5e-18 Score=81.70 Aligned_cols=57 Identities=25% Similarity=0.416 Sum_probs=51.5
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 5 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.++.+....++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 63 (105)
T 1x5u_A 7 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 63 (105)
T ss_dssp CCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEE
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEE
Confidence 334456677999999999999999999999999999999999998899999999995
No 10
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=87.14 Aligned_cols=54 Identities=20% Similarity=0.343 Sum_probs=49.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEE--EEEccCCCCCCceeEEEEC
Q psy7050 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD--IYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~--~~~~~~~~t~~~~g~~fv~ 61 (61)
......++|||+|||+++++++|+++|++||.|.. +.+++|+.+|+++|||||+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~ 73 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQ 73 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEE
Confidence 34455689999999999999999999999999977 9999999999999999995
No 11
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.7e-18 Score=80.66 Aligned_cols=53 Identities=36% Similarity=0.535 Sum_probs=49.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 63 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVR 63 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEE
Confidence 44566899999999999999999999999999999999999999999999985
No 12
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=6.3e-19 Score=88.54 Aligned_cols=61 Identities=82% Similarity=1.430 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 1 m~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
|+++.++++....++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+
T Consensus 35 ~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 95 (135)
T 2lea_A 35 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 95 (135)
T ss_dssp CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEE
T ss_pred CCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEE
Confidence 4567777777888999999999999999999999999999999999998899999999985
No 13
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.1e-18 Score=81.76 Aligned_cols=55 Identities=20% Similarity=0.387 Sum_probs=50.4
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+......++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 63 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQ 63 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEE
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEE
Confidence 3445667899999999999999999999999999999999999999999999995
No 14
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=3.9e-18 Score=82.19 Aligned_cols=56 Identities=23% Similarity=0.446 Sum_probs=50.8
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 6 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
++......++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 61 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLT 61 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEE
Confidence 34445667899999999999999999999999999999999999999999999985
No 15
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.6e-18 Score=81.12 Aligned_cols=54 Identities=39% Similarity=0.595 Sum_probs=50.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.+....++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~ 64 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVK 64 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEE
Confidence 345667999999999999999999999999999999999999999999999995
No 16
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.8e-18 Score=81.13 Aligned_cols=53 Identities=26% Similarity=0.340 Sum_probs=49.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+.+++++|+++|+.||.|..+.++.++.++.++|||||+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 71 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVE 71 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEE
Confidence 34556899999999999999999999999999999999999999999999985
No 17
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=6.3e-19 Score=83.49 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=46.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhhCC-CeEEEEEccCCCCCCceeEEEEC
Q psy7050 14 VSLKVDNLTYRTTPDDLRRVFERCG-EVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.+|||+|||+.+++++|+++|++|| .|.++.+++|+.++.++|||||+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~ 50 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVE 50 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEE
Confidence 6899999999999999999999999 79999999999999999999995
No 18
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.7e-18 Score=80.86 Aligned_cols=56 Identities=34% Similarity=0.678 Sum_probs=51.0
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 6 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+..+.+..++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 63 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFIS 63 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEE
Confidence 34456667999999999999999999999999999999999999899999999985
No 19
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-17 Score=80.77 Aligned_cols=54 Identities=33% Similarity=0.557 Sum_probs=49.7
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.+....++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 65 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVT 65 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEE
Confidence 344566899999999999999999999999999999999999999999999995
No 20
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8e-18 Score=81.36 Aligned_cols=51 Identities=24% Similarity=0.267 Sum_probs=47.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|.++.++.++. +.++|||||+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~ 58 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVV 58 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEE
Confidence 34458999999999999999999999999999999999987 9999999995
No 21
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=2e-17 Score=80.72 Aligned_cols=55 Identities=24% Similarity=0.432 Sum_probs=50.3
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+.+....++|||+|||+.+++++|+++|+.||.|..+.++.++.++.++|||||+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 63 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVS 63 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEE
Confidence 3445667899999999999999999999999999999999998899999999995
No 22
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=79.41 Aligned_cols=52 Identities=27% Similarity=0.346 Sum_probs=48.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeE-EEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVG-DIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~-~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|. .+.++.++.++.++|||||+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~ 58 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVE 58 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEE
Confidence 44569999999999999999999999999999 99999999999999999985
No 23
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=79.80 Aligned_cols=55 Identities=25% Similarity=0.561 Sum_probs=49.9
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccC-CCCCCceeEEEEC
Q psy7050 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRD-RFTRESRGFAFVR 61 (61)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~-~~t~~~~g~~fv~ 61 (61)
+++....++|||+|||+.+++++|+++|++||.|..+.++.+ +.++.++|||||+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~ 64 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVD 64 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEE
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEE
Confidence 345566789999999999999999999999999999999998 7899999999995
No 24
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=78.24 Aligned_cols=54 Identities=41% Similarity=0.565 Sum_probs=49.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
......++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~ 63 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVY 63 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEE
Confidence 344556899999999999999999999999999999999999999999999985
No 25
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=1.7e-17 Score=80.41 Aligned_cols=54 Identities=28% Similarity=0.344 Sum_probs=49.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
......++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 74 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVE 74 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEE
Confidence 344556899999999999999999999999999999999999999999999985
No 26
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=7.8e-18 Score=81.87 Aligned_cols=53 Identities=34% Similarity=0.565 Sum_probs=46.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+.+..++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~ 73 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 73 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEE
Confidence 34556899999999999999999999999999999999999999999999985
No 27
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=2.2e-17 Score=80.83 Aligned_cols=52 Identities=27% Similarity=0.209 Sum_probs=48.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~ 88 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVS 88 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEE
Confidence 4456899999999999999999999999999999999999999999999985
No 28
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=78.12 Aligned_cols=54 Identities=33% Similarity=0.522 Sum_probs=49.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
......++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~ 64 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFIL 64 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEE
Confidence 344566899999999999999999999999999999999999999999999985
No 29
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=78.47 Aligned_cols=52 Identities=35% Similarity=0.667 Sum_probs=48.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 56 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVT 56 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEE
Confidence 4556899999999999999999999999999999999998899999999985
No 30
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=78.95 Aligned_cols=54 Identities=31% Similarity=0.557 Sum_probs=49.7
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
......++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 60 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 60 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEE
Confidence 345566999999999999999999999999999999999999999999999995
No 31
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=85.01 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=46.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCC--CeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCG--EVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..++|||+|||+++++++|+++|+.|| .|.++.++.|+.+|+++|||||+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~ 105 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVV 105 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEE
Confidence 457999999999999999999999999 99999999999999999999995
No 32
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=77.21 Aligned_cols=51 Identities=25% Similarity=0.392 Sum_probs=47.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~ 53 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVD 53 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEE
Confidence 345899999999999999999999999999999999999999999999985
No 33
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=2.3e-17 Score=80.51 Aligned_cols=53 Identities=25% Similarity=0.218 Sum_probs=48.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 73 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 73 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEE
Confidence 34456899999999999999999999999999999999999899999999995
No 34
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-17 Score=79.18 Aligned_cols=52 Identities=21% Similarity=0.370 Sum_probs=47.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEE-EEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD-IYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+.+++++|+++|++||.|.. +.++.+ .+++++|||||+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~ 63 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQ 63 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEE
Confidence 4456689999999999999999999999999987 888888 789999999995
No 35
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=80.17 Aligned_cols=54 Identities=31% Similarity=0.499 Sum_probs=49.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
......++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 74 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFIT 74 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEE
Confidence 345566899999999999999999999999999999999999999999999985
No 36
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=1.2e-17 Score=80.04 Aligned_cols=52 Identities=29% Similarity=0.430 Sum_probs=47.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+.+++++|+++|++||.|..+.++.++ +++++|||||+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~ 56 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVS 56 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEE
Confidence 34456899999999999999999999999999999999997 89999999985
No 37
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=9.3e-18 Score=79.09 Aligned_cols=48 Identities=33% Similarity=0.544 Sum_probs=44.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhhhCC--CeEEEEEccCCCCCCceeEEEEC
Q psy7050 14 VSLKVDNLTYRTTPDDLRRVFERCG--EVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.+|||+|||+++++++|+++|++|| .|.++.++.++.+|+++|||||+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~ 51 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVG 51 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEE
Confidence 5799999999999999999999999 99999999999999999999996
No 38
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-17 Score=78.98 Aligned_cols=54 Identities=17% Similarity=0.371 Sum_probs=48.5
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCC-CCceeEEEEC
Q psy7050 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFT-RESRGFAFVR 61 (61)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t-~~~~g~~fv~ 61 (61)
+......++|||+|||+.+++++|+++|+.|| |..+.++.++.+ ++++|||||+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~ 63 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAE 63 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEE
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEE
Confidence 33445568999999999999999999999999 999999999887 9999999985
No 39
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=79.24 Aligned_cols=53 Identities=34% Similarity=0.414 Sum_probs=49.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 60 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVE 60 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEE
Confidence 44566899999999999999999999999999999999999999999999996
No 40
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=5.5e-17 Score=77.91 Aligned_cols=52 Identities=25% Similarity=0.448 Sum_probs=47.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+.+++++|+++|++|| |..+.++.++.+++++|||||+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~ 62 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVE 62 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEE
Confidence 445568999999999999999999999997 9999999999999999999995
No 41
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=2.4e-17 Score=87.37 Aligned_cols=51 Identities=35% Similarity=0.415 Sum_probs=47.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+++++++|+++|++||.|.++.+++|+.+++++|||||+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~ 63 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVN 63 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccce
Confidence 345899999999999999999999999999999999999999999999985
No 42
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=3.9e-17 Score=76.21 Aligned_cols=50 Identities=24% Similarity=0.412 Sum_probs=46.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..++|||+|||..+++++|+++|++||.|.++.++.++.++.++|||||+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 54 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVS 54 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEE
Confidence 45899999999999999999999999999999999998899999999985
No 43
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=8e-17 Score=77.44 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=47.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|..+.++.++ ++.++|||||+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~ 62 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVK 62 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEE
Confidence 3456899999999999999999999999999999999997 79999999985
No 44
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5.5e-17 Score=76.77 Aligned_cols=50 Identities=34% Similarity=0.606 Sum_probs=47.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~ 53 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFIT 53 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEE
Confidence 45899999999999999999999999999999999999999999999985
No 45
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5.9e-17 Score=77.79 Aligned_cols=52 Identities=25% Similarity=0.238 Sum_probs=48.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhh-CCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFER-CGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+....++|||+|||+.+++++|+++|++ ||.|..+.++.++ ++.++|||||+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~ 57 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVK 57 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEE
Confidence 4456699999999999999999999999 9999999999998 89999999985
No 46
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.72 E-value=3.1e-17 Score=76.23 Aligned_cols=51 Identities=35% Similarity=0.447 Sum_probs=47.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 55 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVE 55 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEE
Confidence 455899999999999999999999999999999999998899999999985
No 47
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=4.6e-18 Score=81.58 Aligned_cols=50 Identities=24% Similarity=0.408 Sum_probs=47.3
Q ss_pred CCcEEEEecCCC------CCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTY------RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~------~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..++|||+|||. .+++++|+++|++||.|.++.++.++.||+++|||||+
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~ 60 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVE 60 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEE
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEE
Confidence 358999999999 99999999999999999999999999999999999985
No 48
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.8e-18 Score=82.54 Aligned_cols=49 Identities=35% Similarity=0.636 Sum_probs=46.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.++|||+|||+.+++++|+++|+.||.|..+.++.++.++.++|||||+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 75 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVT 75 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEE
Confidence 4899999999999999999999999999999999999999999999995
No 49
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=5.2e-17 Score=75.18 Aligned_cols=48 Identities=27% Similarity=0.326 Sum_probs=46.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.+|||+|||+.+++++|+++|++||.|.++.++.++.++.++|||||+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~ 49 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVS 49 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEE
Confidence 689999999999999999999999999999999999999999999985
No 50
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.71 E-value=4e-17 Score=81.47 Aligned_cols=53 Identities=42% Similarity=0.573 Sum_probs=49.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+.+..++|||+|||+.+++++|+++|++||.|..+.++.++.+++.+|||||+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~ 94 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVY 94 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEE
Confidence 44566899999999999999999999999999999999999999999999995
No 51
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=5.1e-17 Score=76.90 Aligned_cols=54 Identities=28% Similarity=0.404 Sum_probs=47.6
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+......++|||+|||+.+++++|+++|++||.|..+.++.++. ++++|||||+
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~ 63 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVC 63 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEE
Confidence 33455669999999999999999999999999999999999975 8999999985
No 52
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=81.02 Aligned_cols=57 Identities=19% Similarity=0.404 Sum_probs=49.2
Q ss_pred CCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 3 YGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 3 ~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.+.+.+...+..+|||+|||+.+++++|+++|+.| .|..+.++.++. |+++|||||+
T Consensus 6 ~~~~~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~ 62 (109)
T 2dnn_A 6 SGKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVK 62 (109)
T ss_dssp CCCCCCCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEE
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEE
Confidence 34444555566899999999999999999999999 899999999975 9999999995
No 53
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.5e-17 Score=82.51 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=46.8
Q ss_pred cEEEEecC----CCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 14 VSLKVDNL----TYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 14 ~~l~v~~l----~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.+|||+|| |+.+++..|+++|+.||+|.++.++.|+.||.++|||||+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVe 54 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIK 54 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEE
Confidence 78999999 9999999999999999999999999999999999999995
No 54
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=5.6e-17 Score=80.14 Aligned_cols=53 Identities=26% Similarity=0.340 Sum_probs=49.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 70 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVE 70 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEE
Confidence 44556899999999999999999999999999999999998899999999985
No 55
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=9.1e-17 Score=77.46 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=48.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+.....++|||+|||+.+++++|+++|++||.|..+.++.++ +++++|||||+
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~ 76 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVH 76 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEE
Confidence 345567899999999999999999999999999999999997 89999999985
No 56
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=75.91 Aligned_cols=48 Identities=38% Similarity=0.687 Sum_probs=45.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~ 48 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 48 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEE
Confidence 479999999999999999999999999999999999899999999995
No 57
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=7.8e-17 Score=75.42 Aligned_cols=49 Identities=33% Similarity=0.671 Sum_probs=46.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 54 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 54 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEE
Confidence 4799999999999999999999999999999999998899999999985
No 58
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-17 Score=80.61 Aligned_cols=49 Identities=35% Similarity=0.533 Sum_probs=46.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.++|||+|||+.+++++|+++|+.||.|..+.++.++.++.++|||||+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 73 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVE 73 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEE
Confidence 4699999999999999999999999999999999999999999999985
No 59
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=6.1e-17 Score=81.12 Aligned_cols=53 Identities=34% Similarity=0.550 Sum_probs=48.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+....++|||+|||+.+++++|+++|+.||.|.++.++.++.+++++|||||+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 90 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVK 90 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEE
Confidence 34456899999999999999999999999999999999999999999999995
No 60
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-16 Score=75.75 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=47.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|..+.++.++ +++++|||||+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~ 64 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVE 64 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEE
Confidence 3456899999999999999999999999999999999997 89999999985
No 61
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.9e-17 Score=77.85 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=45.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+++++++|+++|++||.+ .+.++.++ +++++|||||+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~ 61 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVE 61 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEE
Confidence 44556899999999999999999999999955 99999997 89999999995
No 62
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=9.5e-17 Score=76.24 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=46.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.++|||+|||..+++++|+++|++||.|.++.++.++.+|.++|||||+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 50 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIE 50 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEE
Confidence 3799999999999999999999999999999999999999999999985
No 63
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=79.45 Aligned_cols=52 Identities=35% Similarity=0.433 Sum_probs=48.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 111 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVE 111 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEE
Confidence 4456899999999999999999999999999999999999999999999995
No 64
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=77.13 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=46.9
Q ss_pred CCCCCCCCCcEEEEecCCCCC------CHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 5 RPPPRIEGMVSLKVDNLTYRT------TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 5 ~~~~~~~~~~~l~v~~l~~~~------~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.|+......++|||+|||+.+ ++++|+++|++||.|..+.++ +.+|+++|||||+
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~ 67 (105)
T 2nlw_A 7 RPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLE 67 (105)
T ss_dssp CCCSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEE
T ss_pred CCCCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEE
Confidence 344445556899999999999 779999999999999999888 4678999999985
No 65
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.4e-17 Score=79.64 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=47.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCe-EEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEV-GDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i-~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|+.||.| ..+.++.++ +++++|||||+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~ 63 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQ 63 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEE
Confidence 4556899999999999999999999999999 889999998 89999999995
No 66
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.69 E-value=1.4e-16 Score=81.98 Aligned_cols=53 Identities=28% Similarity=0.352 Sum_probs=48.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 120 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVE 120 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEE
Confidence 34456789999999999999999999999999999999999999999999995
No 67
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=1.2e-16 Score=79.76 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=45.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeE--EEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVG--DIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~--~~~~~~~~~t~~~~g~~fv~ 61 (61)
+....++|||+|||+.+++++|+++|++| .|. .+.++.|+. |+++|||||+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~ 90 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQ 90 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEE
Confidence 44566899999999999999999999999 676 899999977 9999999995
No 68
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=6.8e-17 Score=78.96 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=46.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCC---CCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFT---RESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t---~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|. +.++.++.+ |+++|||||+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~ 58 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLL 58 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEEC
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEE
Confidence 34568999999999999999999999999999 888888777 7999999996
No 69
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8e-17 Score=78.35 Aligned_cols=53 Identities=32% Similarity=0.347 Sum_probs=48.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeE--------EEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVG--------DIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~t~~~~g~~fv~ 61 (61)
+....++|||+|||+.+++++|+++|++||.|. .+.++.++.+++++|||||+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~ 71 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVS 71 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEE
Confidence 455678999999999999999999999999998 69999999999999999995
No 70
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=3.8e-17 Score=74.53 Aligned_cols=47 Identities=36% Similarity=0.593 Sum_probs=44.9
Q ss_pred EEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 47 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 47 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEE
Confidence 58999999999999999999999999999999998899999999985
No 71
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=78.49 Aligned_cols=52 Identities=31% Similarity=0.538 Sum_probs=47.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+.+..++|||+|||+++++++|+++|++||.|..+.++.++ ++.++|||||+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~ 54 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFIT 54 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEE
Confidence 34556999999999999999999999999999999999997 89999999995
No 72
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=2.4e-16 Score=80.31 Aligned_cols=51 Identities=27% Similarity=0.581 Sum_probs=48.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 87 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVE 87 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEE
Confidence 456899999999999999999999999999999999999999999999995
No 73
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.69 E-value=1.2e-16 Score=85.99 Aligned_cols=50 Identities=32% Similarity=0.504 Sum_probs=46.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCC--CeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCG--EVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..++|||+||++.+++++|+++|++|| .|.++.+++|+.+++++|||||+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~ 118 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVG 118 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEE
Confidence 457899999999999999999999999 99999999999999999999995
No 74
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.6e-17 Score=76.63 Aligned_cols=50 Identities=28% Similarity=0.365 Sum_probs=47.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEE-EEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDI-YIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~t~~~~g~~fv~ 61 (61)
..++|||+|||+.+++++|+++|++||.|..+ .++.++.++.++|||||+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~ 54 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFIN 54 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEE
Confidence 45899999999999999999999999999999 999998999999999985
No 75
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.7e-16 Score=76.54 Aligned_cols=51 Identities=27% Similarity=0.417 Sum_probs=47.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|..+.++.++ ++.++|||||+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~ 72 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFAR 72 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEE
Confidence 3456899999999999999999999999999999999997 89999999985
No 76
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.5e-16 Score=74.12 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=48.2
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 6 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+.......++|||+|||+.+++++|+++|+.| .|..+.++.+ .+|+++|||||+
T Consensus 3 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~ 56 (91)
T 2dgw_A 3 SGSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVD 56 (91)
T ss_dssp CCCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEE
T ss_pred CCCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEE
Confidence 33455667999999999999999999999999 8999999999 789999999985
No 77
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.6e-16 Score=76.08 Aligned_cols=53 Identities=28% Similarity=0.288 Sum_probs=47.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...+..++|||+|||+.+++++|+++|.+||.|..+.++.++ +++++|||||+
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~ 62 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVT 62 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEE
Confidence 344556899999999999999999999999999999999986 58999999985
No 78
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-16 Score=75.59 Aligned_cols=51 Identities=27% Similarity=0.399 Sum_probs=46.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+....++|||+|||+.+++++|+++|++||.|..+.++.+ ++.++|||||+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~ 61 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVC 61 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEE
Confidence 4456789999999999999999999999999999999988 78999999985
No 79
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=2.7e-17 Score=75.00 Aligned_cols=47 Identities=34% Similarity=0.565 Sum_probs=45.0
Q ss_pred EEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 47 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 47 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEE
Confidence 58999999999999999999999999999999999999999999985
No 80
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=7.6e-17 Score=81.25 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=47.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCC---eEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGE---VGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+....++|||+|||+++++++|+++|++||. |..+.++.++. |+++|||||+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~ 94 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVE 94 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEE
Confidence 4456789999999999999999999999999 88999999987 9999999995
No 81
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.68 E-value=2.1e-16 Score=80.48 Aligned_cols=51 Identities=82% Similarity=1.376 Sum_probs=47.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~ 118 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 118 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEE
Confidence 446899999999999999999999999999999999999899999999985
No 82
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=76.30 Aligned_cols=51 Identities=31% Similarity=0.538 Sum_probs=46.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCC---CCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRF---TRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---t~~~~g~~fv~ 61 (61)
...++|||+|||+.+++++|+++|++||.|..+.++.++. |+.++|||||+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~ 56 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVE 56 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEE
Confidence 3458999999999999999999999999999999998876 66899999985
No 83
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=3.4e-17 Score=78.43 Aligned_cols=52 Identities=17% Similarity=0.401 Sum_probs=44.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCC-CCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDR-FTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~-~t~~~~g~~fv~ 61 (61)
.....++|||+|||+++++++|+++|+.|| |.++.++.++ .+|+++|||||+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~ 67 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAE 67 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEE
Confidence 345669999999999999999999999999 9999999998 689999999985
No 84
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-17 Score=79.36 Aligned_cols=51 Identities=27% Similarity=0.524 Sum_probs=47.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~ 56 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 56 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEE
Confidence 345899999999999999999999999999999999998899999999985
No 85
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=5.9e-17 Score=78.45 Aligned_cols=53 Identities=19% Similarity=0.353 Sum_probs=48.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhhCCC---eEEEEEccCCCCCCceeEEEEC
Q psy7050 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGE---VGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.+....++|||+|||+++++++|+++|+.||. |..+.++.++. |+++|||||+
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~ 61 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIE 61 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEE
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEE
Confidence 34566799999999999999999999999988 89999999977 9999999995
No 86
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.6e-17 Score=80.50 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=45.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|+.||.|..+.++.+..+|+++|||||+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~ 73 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVE 73 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEE
Confidence 4456899999999999999999999999999886566666789999999995
No 87
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=75.95 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=46.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCC-eEEEEEc-cCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGE-VGDIYIP-RDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~~~~~-~~~~t~~~~g~~fv~ 61 (61)
..++|||+|||+.+++++|+++|..||. |..+.++ .++.++.++|||||+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~ 58 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVE 58 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEE
Confidence 4589999999999999999999999998 9999998 888889999999995
No 88
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=2.5e-16 Score=77.71 Aligned_cols=52 Identities=27% Similarity=0.381 Sum_probs=47.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..+..++|||+|||+.+++++|+++|+.||.|..+.++.++ +|+++|||||+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~ 82 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVH 82 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEE
Confidence 34556899999999999999999999999999999999997 89999999985
No 89
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=1.3e-16 Score=78.49 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=47.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCC---eEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGE---VGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+....++|||+|||+++++++|+++|+.||. |..+.++.++. |+++|||||+
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~ 67 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVE 67 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEE
Confidence 3456689999999999999999999999998 88999999976 9999999995
No 90
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=1.5e-16 Score=81.03 Aligned_cols=50 Identities=36% Similarity=0.591 Sum_probs=47.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+.++|||+|||+++++++|+++|++||.|.++.++.++.+|.++|||||+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 51 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLS 51 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEE
Confidence 35899999999999999999999999999999999999999999999985
No 91
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.5e-16 Score=73.49 Aligned_cols=52 Identities=31% Similarity=0.476 Sum_probs=45.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
......++|||+|||+.+++++|+++|++||.|..+.++.++. .++|||||+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~ 61 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVT 61 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEE
Confidence 3455669999999999999999999999999999999998864 389999985
No 92
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.67 E-value=2.2e-16 Score=77.24 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=42.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..+|||+|||+.+++++|+++|++||.|.++.++.++ +.++|||||+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~ 51 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVH 51 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEE
Confidence 4789999999999999999999999999999999885 4479999995
No 93
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=4.2e-17 Score=76.60 Aligned_cols=48 Identities=31% Similarity=0.609 Sum_probs=46.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
++|||+|||+.+++++|+++|++||.|.++.++.++.++.++|||||+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 49 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVE 49 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEE
Confidence 689999999999999999999999999999999999999999999985
No 94
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=7.9e-17 Score=76.65 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=47.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|.+||.|..+.++.++.+++++|||||+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~ 63 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVA 63 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEE
Confidence 4456899999999999999999999999999888888888899999999985
No 95
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=2.2e-16 Score=77.83 Aligned_cols=49 Identities=33% Similarity=0.662 Sum_probs=46.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 84 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIE 84 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEE
Confidence 5799999999999999999999999999999999998899999999985
No 96
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=2.7e-16 Score=74.15 Aligned_cols=46 Identities=35% Similarity=0.533 Sum_probs=41.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....+|||+|||+++++++|+++|++||.|.++.++.+ ++|||||+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~ 54 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVT 54 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEE
Confidence 44589999999999999999999999999999998874 78999985
No 97
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.66 E-value=7.5e-16 Score=72.47 Aligned_cols=51 Identities=27% Similarity=0.382 Sum_probs=45.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+.+++++|+++|++||.|..+.+..+ +++++|||||+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~ 54 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVK 54 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEE
Confidence 3455699999999999999999999999999999998874 78899999985
No 98
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.9e-16 Score=76.25 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=40.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+.+++++|+++|++||.|.++.++.+ +|||||+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVe 58 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIE 58 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEE
Confidence 44589999999999999999999999999999998865 6899995
No 99
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.8e-16 Score=73.60 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=45.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.+....++|||+|||+.+++++|+++|++||.|..+.++.++.+ ++|||||+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~ 61 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVE 61 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEE
Confidence 34556699999999999999999999999999999999988543 68999985
No 100
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.3e-16 Score=77.81 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=45.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCe----EEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEV----GDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i----~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....+|||+|||+++++++|+++|++||.| ..+.++.+ .+|+++|||||+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~ 74 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVL 74 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEE
Confidence 456899999999999999999999999875 68889988 489999999996
No 101
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.65 E-value=3.3e-16 Score=73.07 Aligned_cols=50 Identities=26% Similarity=0.519 Sum_probs=45.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCC-ceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRE-SRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~-~~g~~fv~ 61 (61)
+.++|||+|||+.+++++|+++|++||.|..+.++.++.++. ++|||||+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~ 53 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVE 53 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEE
Confidence 358999999999999999999999999999999999987766 89999985
No 102
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=4.7e-16 Score=71.93 Aligned_cols=46 Identities=17% Similarity=0.472 Sum_probs=41.9
Q ss_pred cEEEEecCCCCC------CHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 14 VSLKVDNLTYRT------TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 14 ~~l~v~~l~~~~------~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
++|||+|||+.+ ++++|+++|++||.|.++.++ +.+|+++|||||+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~ 53 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLE 53 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEE
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEE
Confidence 789999999999 679999999999999999887 4678999999985
No 103
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.64 E-value=1.1e-16 Score=75.77 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=46.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~ 63 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVA 63 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEE
Confidence 345899999999999999999999999999888888888899999999985
No 104
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=8.3e-16 Score=78.52 Aligned_cols=50 Identities=32% Similarity=0.522 Sum_probs=46.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCC--CceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTR--ESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~--~~~g~~fv~ 61 (61)
+.++|||+|||+.+++++|+++|++||.|.++.++.++.++ +++|||||+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~ 53 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVT 53 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEE
Confidence 45899999999999999999999999999999999998876 899999985
No 105
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.9e-16 Score=74.51 Aligned_cols=52 Identities=33% Similarity=0.531 Sum_probs=45.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
......++|||+|||..+++++|+++|++||.|..+.++.++ +.++|||||+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~ 75 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVT 75 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEE
Confidence 345567899999999999999999999999999999999885 3489999985
No 106
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=72.31 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=44.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHH----HHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLR----RVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+ ++|++||.|.++.++.++.+ +|||||+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~ 58 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQ 58 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEE
Confidence 3455899999999999999999 99999999999999998765 8899985
No 107
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=2.1e-16 Score=79.90 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=44.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+++++++|+++|++|| +..+.++.|+. ++++|||||+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~ 92 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVE 92 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEE
Confidence 34568999999999999999999999999 66999999976 9999999995
No 108
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=74.96 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=41.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|.++.++.+ +|||||+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVe 73 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIE 73 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEE
Confidence 345689999999999999999999999999999998865 6899995
No 109
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=3.3e-15 Score=75.75 Aligned_cols=49 Identities=31% Similarity=0.535 Sum_probs=46.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.++|||+|||+.+++++|+++|+.||.|.++.++.++.+|.++|||||+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~ 50 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVN 50 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEE
Confidence 3799999999999999999999999999999999998899999999985
No 110
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.1e-15 Score=71.58 Aligned_cols=50 Identities=28% Similarity=0.387 Sum_probs=43.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+.+++++|+++|++||.|..+.+..+ +.++|||||+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~ 67 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVE 67 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEE
Confidence 4455689999999999999999999999999999998654 5589999985
No 111
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=2e-15 Score=78.61 Aligned_cols=50 Identities=28% Similarity=0.382 Sum_probs=46.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+.+++++|+++|++||.|..+.++.++ ++.++|||||+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~ 135 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVH 135 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEE
Confidence 446899999999999999999999999999999999997 89999999995
No 112
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4.5e-15 Score=71.81 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=41.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVe 57 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVE 57 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEE
Confidence 3445689999999999999999999999999999988753 6899985
No 113
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.2e-15 Score=72.04 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=40.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|.++.++.+ +|||||+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVe 57 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLE 57 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEE
Confidence 345589999999999999999999999999999988754 7899985
No 114
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.60 E-value=2e-15 Score=76.75 Aligned_cols=49 Identities=33% Similarity=0.379 Sum_probs=46.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.++|||+|||+.+++++|+++|++||.|.++.++.++.++.++|||||+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 51 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVD 51 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEE
Confidence 4899999999999999999999999999999999998899999999985
No 115
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.3e-14 Score=73.49 Aligned_cols=53 Identities=25% Similarity=0.297 Sum_probs=49.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||..+++++|+++|++||.|..+.++.++.++.++|+|||+
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~ 135 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVS 135 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEE
Confidence 44556899999999999999999999999999999999999999999999985
No 116
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=4.4e-15 Score=85.78 Aligned_cols=51 Identities=31% Similarity=0.546 Sum_probs=47.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+.+++++|.++|++||.|..+.|+.++.+++++|||||+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~ 150 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE 150 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEe
Confidence 345799999999999999999999999999999999999999999999995
No 117
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=8.2e-15 Score=70.89 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=41.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+.....++|||+|||+++++++|+++|++||.|..+.++.+ |||||+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~ 56 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVE 56 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEE
Confidence 34456799999999999999999999999999999999876 799985
No 118
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.7e-15 Score=70.90 Aligned_cols=45 Identities=40% Similarity=0.648 Sum_probs=41.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..++|||+|||+.+++++|+++|++||.|..+.++.+ ++|||||+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~ 48 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVT 48 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEE
Confidence 4589999999999999999999999999999998765 68899985
No 119
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.59 E-value=7.3e-15 Score=76.26 Aligned_cols=50 Identities=34% Similarity=0.472 Sum_probs=47.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..++|||+|||+.+++++|+++|+.||.|..+.++.++.++.++|||||+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 152 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEE
Confidence 44899999999999999999999999999999999998899999999985
No 120
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.9e-15 Score=72.40 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=46.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH---HHhhhCCCeEEEEEccCCCCC---CceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLR---RVFERCGEVGDIYIPRDRFTR---ESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~---~~f~~~G~i~~~~~~~~~~t~---~~~g~~fv~ 61 (61)
.....++|||+|||+.+++++|+ ++|++||.|..+.++.++.++ .++|||||+
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~ 69 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVT 69 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEE
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEE
Confidence 34556899999999999999999 999999999999999887644 566999995
No 121
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.59 E-value=1.4e-14 Score=73.96 Aligned_cols=51 Identities=22% Similarity=0.377 Sum_probs=47.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~ 142 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCE 142 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEE
Confidence 446899999999999999999999999999999999998899999999985
No 122
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=1e-16 Score=78.37 Aligned_cols=52 Identities=23% Similarity=0.218 Sum_probs=47.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEE--------EEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD--------IYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|.. +.++.++.+++++|||||+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~ 63 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVS 63 (116)
Confidence 345689999999999999999999999999998 8899998899999999985
No 123
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.59 E-value=7.7e-15 Score=70.69 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=40.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+.+++++|+++|++||.|.++.+++ .+|+|||+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVe 63 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVE 63 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEE
Confidence 4458999999999999999999999999999998874 36899985
No 124
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=8.1e-15 Score=73.09 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=42.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH----HHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLR----RVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+.+++++|+ ++|++||.|.++.+.. +++++|||||+
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~ 78 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIV 78 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEE
Confidence 44556899999999999998865 6999999999987753 57889999995
No 125
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.6e-15 Score=71.67 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=40.9
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTY-RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.+..++|||+|||+ .+++++|+++|++||.|.++.++.+ +|||||+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVe 58 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIE 58 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEE
Confidence 44568999999999 9999999999999999999998865 4789985
No 126
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=6.8e-15 Score=77.31 Aligned_cols=49 Identities=31% Similarity=0.542 Sum_probs=44.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.++|||+|||+++++++|+++|+.||.|.++.++.++.++.++|||||+
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~ 76 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVE 76 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEE
Confidence 4799999999999999999999999999999999998899999999985
No 127
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=67.39 Aligned_cols=50 Identities=26% Similarity=0.363 Sum_probs=43.2
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 6 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.+++....++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~ 54 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQ 54 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEE
Confidence 3445566789999999999999999999999999999998763 6899985
No 128
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=9.3e-15 Score=69.78 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=42.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+.+++++|+++|++||.| .++.+ .+++++|||||+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~ 59 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIE 59 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEE
Confidence 44566999999999999999999999999976 56666 678999999995
No 129
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.57 E-value=2.1e-14 Score=72.98 Aligned_cols=57 Identities=37% Similarity=0.503 Sum_probs=50.6
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 5 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.+.......++|||+|||..+++++|+++|++||.|..+.++.++.++.++|+|||+
T Consensus 81 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~ 137 (168)
T 1b7f_A 81 RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVR 137 (168)
T ss_dssp CCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEE
Confidence 344445566899999999999999999999999999999999998899999999985
No 130
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.57 E-value=1.6e-14 Score=73.16 Aligned_cols=56 Identities=29% Similarity=0.392 Sum_probs=49.8
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 6 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+.......++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+
T Consensus 81 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~ 136 (167)
T 1fxl_A 81 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 136 (167)
T ss_dssp CCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEE
Confidence 33344556899999999999999999999999999999999998899999999985
No 131
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=2e-16 Score=75.67 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=44.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+.+++++|+++|+.||.|.. .++.++.++.++|||||+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~ 64 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVD 64 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEE
Confidence 45689999999999999999999999998877 667777889999999985
No 132
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=68.92 Aligned_cols=52 Identities=33% Similarity=0.402 Sum_probs=44.6
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.......++|||+|||+.+++++|+++|+.++ .+.++.++.+++++|||||+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~ 60 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVD 60 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEE
Confidence 34456678999999999999999999999774 57778888899999999995
No 133
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.56 E-value=3.6e-14 Score=73.75 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=47.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~ 162 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCE 162 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEE
Confidence 456899999999999999999999999999999999998899999999985
No 134
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=2.1e-14 Score=69.93 Aligned_cols=48 Identities=29% Similarity=0.504 Sum_probs=42.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+..++|||+|||+.+++++|+++|++||.|..+.++.+ +..+|||||+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~ 53 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVV 53 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEE
Confidence 34589999999999999999999999999999999876 4458999985
No 135
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-15 Score=74.21 Aligned_cols=52 Identities=33% Similarity=0.287 Sum_probs=40.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|..+.+..+..+++++|||||+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~ 73 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFIT 73 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEE
Confidence 3456899999999999999999999999988433222222378899999995
No 136
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.54 E-value=3e-14 Score=75.00 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=44.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.++|||+|||+.+++++|+++|++||.|..+.++++. ++.++|||||+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVe 156 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVV 156 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEE
Confidence 4799999999999999999999999999999999885 58899999995
No 137
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=71.04 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=40.5
Q ss_pred CCCCcEEEEecCCCC-CCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYR-TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||++ +++++|+++|++||.|.++.+++ .+|||||+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVe 68 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIE 68 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEE
Confidence 344689999999998 99999999999999999998864 47899995
No 138
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.54 E-value=4.1e-14 Score=74.31 Aligned_cols=51 Identities=24% Similarity=0.498 Sum_probs=47.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||..+++++|+++|++||.|..+.++.++.+++++|||||+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~ 173 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIE 173 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEE
Confidence 345899999999999999999999999999999999998899999999985
No 139
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=4.8e-14 Score=66.93 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=40.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~ 59 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQ 59 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEE
Confidence 344589999999999999999999999999999988753 6799985
No 140
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=2e-14 Score=67.90 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=40.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+...-|||+||++.+++++|+++|.+||+|.++++.. ++|||||+
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVe 49 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCK 49 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEE
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEE
Confidence 3457899999999999999999999999999999864 68999996
No 141
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.53 E-value=1.3e-14 Score=73.81 Aligned_cols=50 Identities=26% Similarity=0.406 Sum_probs=47.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~ 135 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVT 135 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEE
Confidence 35799999999999999999999999999999999998899999999985
No 142
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.53 E-value=3.3e-14 Score=72.00 Aligned_cols=48 Identities=27% Similarity=0.456 Sum_probs=42.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+.+++++|+++|++||.|.++.++.+ ++|||||+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~ 116 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVE 116 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEE
Confidence 3455689999999999999999999999999999999876 58899985
No 143
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=6.5e-15 Score=69.80 Aligned_cols=50 Identities=30% Similarity=0.527 Sum_probs=42.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH----HHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLR----RVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+....++|||+|||+.+++++|+ ++|++||.|..+.+.. ++.++|||||+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~ 57 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVI 57 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEE
Confidence 44556899999999999999999 9999999999998863 47788999985
No 144
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.52 E-value=3.3e-14 Score=71.98 Aligned_cols=47 Identities=32% Similarity=0.438 Sum_probs=42.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
++|||+|||+.+++++|+++|++||.|.++.++.++ +++++|||||+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~ 47 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVE 47 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEE
Confidence 589999999999999999999999999999999886 47799999985
No 145
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=5.5e-14 Score=66.92 Aligned_cols=47 Identities=34% Similarity=0.740 Sum_probs=41.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~ 57 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIR 57 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEE
Confidence 3455689999999999999999999999999999988754 6899985
No 146
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=7.4e-14 Score=65.49 Aligned_cols=44 Identities=34% Similarity=0.582 Sum_probs=39.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|..+.++ +|||||+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~ 48 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVH 48 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEE
Confidence 3456899999999999999999999999999999886 5799985
No 147
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=9e-14 Score=65.42 Aligned_cols=49 Identities=31% Similarity=0.417 Sum_probs=41.9
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 5 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.+++.....++|||+|||+.+++++|+++|++||.|..+.++++ ||||+
T Consensus 2 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~ 50 (92)
T 2dgt_A 2 SSGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVH 50 (92)
T ss_dssp CCSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEE
Confidence 34455667799999999999999999999999999999988633 89884
No 148
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.51 E-value=2.1e-14 Score=70.25 Aligned_cols=45 Identities=22% Similarity=0.224 Sum_probs=38.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|..+.++.+ |||||+
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~ 57 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVE 57 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEE
Confidence 455689999999999999999999999999999998765 899985
No 149
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.5e-13 Score=64.91 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=40.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|..+ +.++.++. ||||+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~ 51 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVE 51 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEE
Confidence 3445899999999999999999999999999987 55666665 99985
No 150
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=3.4e-14 Score=67.80 Aligned_cols=43 Identities=33% Similarity=0.590 Sum_probs=39.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
++|||+|||+.+++++|+++|++||.|..+.++.+ ++|||||+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~ 43 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVE 43 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEE
Confidence 58999999999999999999999999999999876 68899985
No 151
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.50 E-value=8.5e-14 Score=71.02 Aligned_cols=49 Identities=29% Similarity=0.410 Sum_probs=45.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..++|||+|||+.+++++|+++|++||.|.++.++.++ +|.++|||||+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~ 142 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVT 142 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEE
Confidence 55899999999999999999999999999999999985 58999999985
No 152
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=7.1e-14 Score=66.69 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=39.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..++|||+|||..+++++|+++|++||.|.++.+. +++|||||+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~ 69 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIK 69 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEE
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEE
Confidence 45899999999999999999999999999999886 357899985
No 153
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.50 E-value=3.2e-14 Score=69.56 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=40.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCC-CeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCG-EVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+.+++++|+++|++|| .|..+.+..+ .++|||||+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~ 73 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALE 73 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEE
Confidence 3458999999999999999999999999 8999887533 478999985
No 154
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.8e-14 Score=67.43 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=41.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~ 67 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVR 67 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEE
Confidence 345689999999999999999999999999999998875 6899985
No 155
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.49 E-value=1.3e-13 Score=66.11 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=39.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
......++|||+|||+.+++++|+++|++||.|..+.++ +|||||+
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~ 51 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIH 51 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEE
Confidence 344566899999999999999999999999999999876 3488884
No 156
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.49 E-value=7.1e-14 Score=67.76 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=39.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|..+.+. +|||||+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~ 71 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVE 71 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEE
Confidence 4456899999999999999999999999999999886 6899985
No 157
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=3.4e-14 Score=69.16 Aligned_cols=44 Identities=23% Similarity=0.398 Sum_probs=39.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..++|||+|||+.+++++|+++|++||.|..+.++. .+|||||+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~ 52 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVE 52 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEE
Confidence 457999999999999999999999999999998763 56799985
No 158
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=9.6e-14 Score=65.91 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=39.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|. +.++. +.++|||||+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~ 62 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLH 62 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEE
Confidence 44568999999999999999999999999986 55554 3578999985
No 159
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.47 E-value=3.1e-13 Score=73.65 Aligned_cols=50 Identities=20% Similarity=0.303 Sum_probs=47.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~ 143 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAE 143 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEE
Confidence 34799999999999999999999999999999999998899999999985
No 160
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.47 E-value=2.8e-13 Score=64.49 Aligned_cols=44 Identities=27% Similarity=0.461 Sum_probs=39.3
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTY-RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~ 63 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQ 63 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEE
Confidence 45568999999998 99999999999999999999873 7899985
No 161
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=3.3e-14 Score=67.25 Aligned_cols=47 Identities=28% Similarity=0.507 Sum_probs=40.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~ 59 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIE 59 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEE
Confidence 4456899999999999999999999999987655 3568899999985
No 162
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.46 E-value=2.8e-13 Score=73.82 Aligned_cols=50 Identities=28% Similarity=0.505 Sum_probs=43.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH----HHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLR----RVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+....++|||+|||+.+++++|+ ++|+.||.|.++.+.. +++++|||||+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~ 58 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVI 58 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEE
Confidence 44556999999999999999976 8999999999998875 67899999995
No 163
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.46 E-value=9.1e-15 Score=73.56 Aligned_cols=52 Identities=25% Similarity=0.256 Sum_probs=41.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEE--EccC---CCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIY--IPRD---RFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~--~~~~---~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|+.||.|..+. ++.+ ..++.++|||||+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~ 98 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIG 98 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEE
Confidence 34558999999999999999999999999887641 1111 2468899999985
No 164
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.46 E-value=2.6e-13 Score=65.67 Aligned_cols=42 Identities=24% Similarity=0.464 Sum_probs=38.1
Q ss_pred CCcEEEEecCCCC-CCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYR-TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..++|||+|||+. +++++|+++|++||.|..+.+ .+|||||+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~ 68 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQ 68 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEE
Confidence 3489999999999 999999999999999999987 57899985
No 165
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.7e-13 Score=64.95 Aligned_cols=44 Identities=30% Similarity=0.512 Sum_probs=38.2
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTY-RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~ 51 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQ 51 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEE
Confidence 44568999999999 99999999999999999999873 6799985
No 166
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.1e-13 Score=64.49 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=40.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEE-EEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDI-YIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|++||.|..+ .++.++.++. |||+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~ 60 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVT 60 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEE
Confidence 3456899999999999999999999999999999 5888876543 7774
No 167
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.44 E-value=4.8e-13 Score=72.62 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=45.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...+|||+|||..+++++|+++|+.||.|..+.++.+ .+|.++|||||+
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~ 143 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVE 143 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEE
Confidence 3579999999999999999999999999999999999 589999999995
No 168
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.44 E-value=3.8e-13 Score=69.57 Aligned_cols=48 Identities=25% Similarity=0.334 Sum_probs=41.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.+...+|||+||++.+++++|+++|++||.|.++.+..+ ..+|||||+
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVe 90 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQ 90 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEE
Confidence 444578999999999999999999999999999988643 257899995
No 169
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2e-13 Score=67.04 Aligned_cols=45 Identities=29% Similarity=0.530 Sum_probs=38.8
Q ss_pred CCCcEEEE--ecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKV--DNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v--~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++||| +||++.+++++|+++|++||.|..+.++. .+|||||+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~ 69 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFAR 69 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEE
Confidence 34588999 77999999999999999999999987753 37899985
No 170
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=5.2e-13 Score=62.56 Aligned_cols=45 Identities=31% Similarity=0.468 Sum_probs=39.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+.+++++|+++|++||.|..+.++++ ||||+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~ 49 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVH 49 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEE
Confidence 3455689999999999999999999999999999988743 88884
No 171
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.42 E-value=3.5e-13 Score=71.98 Aligned_cols=48 Identities=31% Similarity=0.364 Sum_probs=42.7
Q ss_pred CCCCCcEEEEecCCC-CCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTY-RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|||+|||+ .+++++|+++|++||.|.++.++.++ +|||||+
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~ 78 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQ 78 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEE
Confidence 345568999999999 99999999999999999999998874 7899985
No 172
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.42 E-value=5.5e-13 Score=61.92 Aligned_cols=45 Identities=27% Similarity=0.443 Sum_probs=39.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhC----C-------CeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERC----G-------EVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+.+++++|+++|++| | .+.++.+..+ +|||||+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~ 59 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLE 59 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEE
Confidence 345899999999999999999999999 8 8999988754 7899985
No 173
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.40 E-value=8.4e-13 Score=69.88 Aligned_cols=48 Identities=23% Similarity=0.391 Sum_probs=43.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...+|||+|||+.+++++|+++|+.||.|..+.++.+. +.++|||||+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~ 149 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVH 149 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEE
Confidence 34789999999999999999999999999999999885 4479999985
No 174
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.40 E-value=7.3e-13 Score=70.18 Aligned_cols=45 Identities=24% Similarity=0.252 Sum_probs=40.4
Q ss_pred CCcEEEEecCC-CCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLT-YRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~-~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+.++|||+||| +.+++++|+++|++||.|.++.++.+ .+|||||+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~ 48 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVE 48 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEE
Confidence 35899999999 89999999999999999999999875 37899985
No 175
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3.4e-13 Score=63.48 Aligned_cols=45 Identities=33% Similarity=0.489 Sum_probs=37.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCC-eEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGE-VGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+++++++|+++|++||. +..+.+. .+|||||+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~ 50 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVD 50 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEE
Confidence 345589999999999999999999999999 5555442 47899985
No 176
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.7e-12 Score=60.97 Aligned_cols=43 Identities=28% Similarity=0.416 Sum_probs=37.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhC--CCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERC--GEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+.+++++|+++|++| |.|..+.+. +|||||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~ 57 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVH 57 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEE
Confidence 445899999999999999999999999 889888764 5699985
No 177
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.40 E-value=7.2e-13 Score=72.47 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=42.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|+.||.|.++.++.++.+ ++|||||+
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~ 87 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIE 87 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEE
Confidence 345689999999999999999999999999999999988643 47999985
No 178
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.39 E-value=1.1e-12 Score=71.67 Aligned_cols=51 Identities=24% Similarity=0.269 Sum_probs=45.1
Q ss_pred CCCcEEEEecCCCC-CCHHHHHHHhhhCCCeEEEEEccCCC-CCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYR-TTPDDLRRVFERCGEVGDIYIPRDRF-TRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~-t~~~~g~~fv~ 61 (61)
...++|||+|||+. +++++|+++|++||.|..+.++.+.. ||.++|||||+
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~ 260 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMV 260 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEE
Confidence 34589999999999 99999999999999999999999876 58999999985
No 179
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.37 E-value=9.1e-13 Score=61.59 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=38.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..++|||+|||+.+++++|+++|++| .|..+.+. +++|||||+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~ 46 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVT 46 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEE
Confidence 45899999999999999999999999 89888873 478999985
No 180
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.36 E-value=1.1e-12 Score=69.45 Aligned_cols=47 Identities=11% Similarity=0.139 Sum_probs=41.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhhCCCe--EEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVSLKVDNLTYRTTPDDLRRVFERCGEV--GDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i--~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.++|||+|||+.+++++|+++|++||.| .++.+..++ +..+|+|||+
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~ 171 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLE 171 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEE
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEE
Confidence 4689999999999999999999999998 888888774 5567999985
No 181
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=6.1e-12 Score=59.59 Aligned_cols=44 Identities=30% Similarity=0.315 Sum_probs=37.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|+ .+++++|+++|++||.|..+.+. ..+|||||+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~ 55 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVT 55 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEE
Confidence 345689999995 89999999999999999999884 467899985
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.33 E-value=5.3e-12 Score=68.82 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=45.9
Q ss_pred CCCCcEEEEecCCCCC-CHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRT-TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~-~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+ ++++|+++|+.||.|..+.++.++ +|.++|+|||+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~ 232 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLE 232 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEE
Confidence 3456899999999995 999999999999999999999886 78999999985
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.33 E-value=8.8e-14 Score=71.27 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=43.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+....++|||+|||+.+++++|+++|..+|.+.. .++.+..++.++|||||+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~ 60 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVD 60 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEE
Confidence 4556799999999999999999999999987655 344555678899999985
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.32 E-value=5.5e-12 Score=64.54 Aligned_cols=47 Identities=28% Similarity=0.507 Sum_probs=40.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|||+.+++++|+++|+++|.|..+ ..++.++|||||+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~ 142 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIE 142 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEE
Confidence 3455899999999999999999999999987765 4678899999985
No 185
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.32 E-value=5e-12 Score=63.30 Aligned_cols=46 Identities=28% Similarity=0.447 Sum_probs=39.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeE-EEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGF-AFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~-~fv~ 61 (61)
+.--.|||+||++.+++++|+++|++||.|.++.+..+ .+|| |||+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVe 72 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQ 72 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEE
Confidence 44467899999999999999999999999999988653 2577 9985
No 186
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.31 E-value=1.4e-11 Score=61.21 Aligned_cols=42 Identities=36% Similarity=0.457 Sum_probs=36.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeE-EEEC
Q psy7050 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGF-AFVR 61 (61)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~-~fv~ 61 (61)
..|||+||++.+++++|+++|++||.|.++.+.. + .|| |||+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVe 68 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVE 68 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEE
Confidence 4578999999999999999999999999998854 2 275 9985
No 187
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.30 E-value=5.9e-12 Score=68.33 Aligned_cols=45 Identities=42% Similarity=0.765 Sum_probs=39.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...++|||+|||+++++++|+++|+.||.|..+.+.+ .+|||||+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~ 64 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIR 64 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEE
Confidence 4558999999999999999999999999999998854 36899985
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.30 E-value=2.9e-12 Score=66.75 Aligned_cols=44 Identities=32% Similarity=0.386 Sum_probs=40.1
Q ss_pred CcEEEEecCCC-CCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVSLKVDNLTY-RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.++|||+|||+ .+++++|+++|++||.|.++.++.++ +|||||+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~ 47 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQ 47 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEE
Confidence 48999999999 99999999999999999999998874 7789984
No 189
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.28 E-value=2.4e-11 Score=66.19 Aligned_cols=45 Identities=22% Similarity=0.216 Sum_probs=40.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..++|||+|||..+++++|+++|++||.|.++.++.++ +|||||+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~ 250 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVE 250 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEE
Confidence 45889999999999999999999999999999988653 5899985
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.27 E-value=6.2e-12 Score=68.27 Aligned_cols=46 Identities=24% Similarity=0.332 Sum_probs=40.5
Q ss_pred CCCCcEEEEecCCCCC---------CHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRT---------TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~---------~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+||+..+ ++++|+++|++||.|.++.++. .+|||||+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~ 185 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVK 185 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEE
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEE
Confidence 3456899999999998 6999999999999999999875 47899995
No 191
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.22 E-value=1.8e-11 Score=69.24 Aligned_cols=45 Identities=31% Similarity=0.552 Sum_probs=38.3
Q ss_pred CCCcEEEEec--CCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 11 EGMVSLKVDN--LTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 11 ~~~~~l~v~~--l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....+|||+| |++.+++++|+++|++||.|.++.+.. .+|||||+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~ 62 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFAR 62 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEE
Confidence 4458999999 578999999999999999999886643 47899995
No 192
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.22 E-value=1.9e-11 Score=60.29 Aligned_cols=44 Identities=30% Similarity=0.315 Sum_probs=37.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
....++|||+|+ .+++++|+++|++||.|.++.+. ..+|||||+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~ 79 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVT 79 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEE
Confidence 345689999995 69999999999999999999875 467899985
No 193
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.18 E-value=1.4e-10 Score=56.05 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=41.3
Q ss_pred CCcEEEEecCCC-----CCCHHHHHHHhhhCCCeEEEEEccCCCC-CCceeEEEEC
Q psy7050 12 GMVSLKVDNLTY-----RTTPDDLRRVFERCGEVGDIYIPRDRFT-RESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~-----~~~~~~l~~~f~~~G~i~~~~~~~~~~t-~~~~g~~fv~ 61 (61)
..++|++.|+.. +-.+++|++.|++||.|.++.++.++.+ ++++|+|||+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~ 62 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLE 62 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEE
Confidence 348999999963 2367999999999999999999988654 6889999985
No 194
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.16 E-value=8.4e-11 Score=59.82 Aligned_cols=44 Identities=25% Similarity=0.429 Sum_probs=37.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhC----C-------CeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERC----G-------EVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+.++|||+|||+.+++++|+++|++| | .+.++.+. ..+|||||+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~ 57 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLE 57 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEE
Confidence 45899999999999999999999999 6 67776654 347899985
No 195
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.13 E-value=1.2e-10 Score=60.39 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=36.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhC----C-------CeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERC----G-------EVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..++|||+|||+.+++++|+++|+.| | .+.++.+ +.++|||||+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~ 57 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLE 57 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEE
Confidence 35899999999999999999999999 5 5666554 4468899985
No 196
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=2.2e-10 Score=54.66 Aligned_cols=39 Identities=36% Similarity=0.440 Sum_probs=32.0
Q ss_pred CcE-EEEecCCCCCCHHH----HHHHhhhC-CCeEEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVS-LKVDNLTYRTTPDD----LRRVFERC-GEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~-l~v~~l~~~~~~~~----l~~~f~~~-G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
..+ |||+|||+.+++++ |+++|++| |.|.++ ++ |+|||+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~ 52 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILR 52 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEE
Confidence 345 99999999999877 66899999 599887 33 899984
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.09 E-value=2.2e-10 Score=59.58 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=39.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhhCC-CeEEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVSLKVDNLTYRTTPDDLRRVFERCG-EVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.++|||+|||..+++++|+++|++|| .|..+.+..+ .+|+|||+
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~ 164 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQ 164 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEE
Confidence 68999999999999999999999999 9999988654 26899985
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.08 E-value=3.5e-10 Score=60.32 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=38.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhhCC-CeEEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVSLKVDNLTYRTTPDDLRRVFERCG-EVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.++|||+|||..+++++|+++|++|| .|..+.+..+ .+|+|||+
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~ 195 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQ 195 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEE
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEE
Confidence 58999999999999999999999999 9999988643 36799985
No 199
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.9e-09 Score=51.68 Aligned_cols=45 Identities=27% Similarity=0.333 Sum_probs=35.5
Q ss_pred CCcEEEEecCC-------CCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 12 GMVSLKVDNLT-------YRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 12 ~~~~l~v~~l~-------~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
...+|.|.-.. ..+++++|+++|++||.|..+.++ ++++|||||+
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVe 60 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVE 60 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEE
Confidence 34566665432 457899999999999999999887 3579999995
No 200
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=1.9e-09 Score=53.38 Aligned_cols=42 Identities=24% Similarity=0.126 Sum_probs=38.3
Q ss_pred CCCCCcEEEEecCCCC-CCHHHHHHHhhhCCCeEEEEEccCCC
Q psy7050 9 RIEGMVSLKVDNLTYR-TTPDDLRRVFERCGEVGDIYIPRDRF 50 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~ 50 (61)
....++.|||+||++. +++++|+++|++||.|..+.+..+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~ 56 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK 56 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC
Confidence 4567799999999999 99999999999999999999988765
No 201
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=3.1e-09 Score=51.44 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=38.0
Q ss_pred CCCCCcEEEEecCCCCCC-----------HHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 9 RIEGMVSLKVDNLTYRTT-----------PDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~-----------~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.....++|++.||..... +++|+++|++||.|.++.+ .++ .++|||||+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~ 70 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVS 70 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEE
Confidence 445568999999944432 5799999999999999965 453 379999985
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.87 E-value=4.5e-10 Score=54.08 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=33.8
Q ss_pred EecCCCCCCHHHHHHHh------------hhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 18 VDNLTYRTTPDDLRRVF------------ERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 18 v~~l~~~~~~~~l~~~f------------~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
+.+|++.+++++|++.| ++||.|.++.+++++. ++++|||||+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~ 74 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVK 74 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEE
Confidence 45666666777666665 9999999999998854 7899999985
No 203
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.76 E-value=1.5e-08 Score=48.77 Aligned_cols=49 Identities=27% Similarity=0.238 Sum_probs=38.8
Q ss_pred CcEEEEecC--CCCCC--------HHHHHHHhhhCCCeEEEEEccCCCC--CCceeEEEEC
Q psy7050 13 MVSLKVDNL--TYRTT--------PDDLRRVFERCGEVGDIYIPRDRFT--RESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l--~~~~~--------~~~l~~~f~~~G~i~~~~~~~~~~t--~~~~g~~fv~ 61 (61)
.+.|.+.|+ +.... +++|++.|++||.|.++.+++++.+ +.++|++||+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~ 65 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVE 65 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEE
Confidence 378889987 33332 3689999999999999999988765 3678999985
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.68 E-value=3.9e-08 Score=48.33 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=39.3
Q ss_pred CcEEEEecCCC--CC---CHHHHHHHhhhCCCeEEEEEccCCC----CCCceeEEEEC
Q psy7050 13 MVSLKVDNLTY--RT---TPDDLRRVFERCGEVGDIYIPRDRF----TRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~--~~---~~~~l~~~f~~~G~i~~~~~~~~~~----t~~~~g~~fv~ 61 (61)
.+.|++.|+-. ++ -+++|++.|++||.|.++.++.++. ++..+|++||+
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~ 77 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVE 77 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEE
Confidence 47899999832 22 2589999999999999999998864 35678999985
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.05 E-value=3.3e-06 Score=41.21 Aligned_cols=45 Identities=20% Similarity=0.408 Sum_probs=33.2
Q ss_pred CcEEEEecCCCCC----------CHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVSLKVDNLTYRT----------TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~~~----------~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.+.|.+.|+=..- -+++|++.|++||.|.++.+.++. .+|++||+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~ 61 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVK 61 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEE
Confidence 4678888862211 135789999999999999887653 48999985
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.82 E-value=4.3e-05 Score=40.42 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=29.8
Q ss_pred CHHHHHHHhhhCCCeEEEEEccC----CCCCCceeEEEEC
Q psy7050 26 TPDDLRRVFERCGEVGDIYIPRD----RFTRESRGFAFVR 61 (61)
Q Consensus 26 ~~~~l~~~f~~~G~i~~~~~~~~----~~t~~~~g~~fv~ 61 (61)
.+++|++.|++||.|.++.+..+ +.++.++|++||+
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~ 181 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVE 181 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEE
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEE
Confidence 45789999999999999998744 3456899999985
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.09 E-value=0.0022 Score=30.24 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=27.7
Q ss_pred cEEEEecCCC----CCCH----HHHHHHhhhCCCeEEEEEccCC
Q psy7050 14 VSLKVDNLTY----RTTP----DDLRRVFERCGEVGDIYIPRDR 49 (61)
Q Consensus 14 ~~l~v~~l~~----~~~~----~~l~~~f~~~G~i~~~~~~~~~ 49 (61)
.||.|.-.+. .+-. .+|.+.|.+||.+..++++.++
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK 51 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence 7888887662 2222 5788999999999999998774
No 208
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.90 E-value=0.0061 Score=29.13 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=28.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccC
Q psy7050 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRD 48 (61)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~ 48 (61)
......+++ ++|..+...||.++|++||.+ .+.|+.|
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD 49 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD 49 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC
Confidence 334456666 999999999999999999854 5666655
No 209
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.52 E-value=0.012 Score=28.23 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=26.7
Q ss_pred EEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccC
Q psy7050 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRD 48 (61)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~ 48 (61)
.+++ ++|..+...+|.++|++|| ...+.|+.|
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD 39 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD 39 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC
Confidence 4555 9999999999999999999 456777765
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.21 E-value=0.0077 Score=28.55 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=28.1
Q ss_pred cEEEEecCCCC------CCH---HHHHHHhhhCCCeEEEEEccCC
Q psy7050 14 VSLKVDNLTYR------TTP---DDLRRVFERCGEVGDIYIPRDR 49 (61)
Q Consensus 14 ~~l~v~~l~~~------~~~---~~l~~~f~~~G~i~~~~~~~~~ 49 (61)
.||.|.-++.. ..+ .+|.+.|..||.+..+++..|+
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~ 60 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ 60 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc
Confidence 89999988643 222 4688999999999999988774
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.19 E-value=0.031 Score=26.22 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=28.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccC
Q psy7050 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRD 48 (61)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~ 48 (61)
.+|-|++||+..+++++.+.+.....+.....+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G 36 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSN 36 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEES
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCC
Confidence 57899999999999999999998876655544433
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.024 Score=27.73 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=33.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhC-----CCeEEEEEccC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERC-----GEVGDIYIPRD 48 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~-----G~i~~~~~~~~ 48 (61)
..++|-+-|||..++++.++.+.+++ |.+.++.+..|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD 61 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD 61 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC
Confidence 35889999999999999999999999 99999988766
No 213
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.46 E-value=0.014 Score=34.55 Aligned_cols=43 Identities=7% Similarity=0.188 Sum_probs=31.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCCCCCCceeEEEEC
Q psy7050 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (61)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~t~~~~g~~fv~ 61 (61)
.+.|+|. .|...++++|.+.|++||.|.++.+-.+. | -|+.||
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~ve 95 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVE 95 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEE
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEE
Confidence 4789997 79999999999999999999998765432 2 477764
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.48 E-value=0.45 Score=22.87 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=27.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhh-----CCCeEEEEE
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFER-----CGEVGDIYI 45 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~-----~G~i~~~~~ 45 (61)
...++|.|.|||..+.++.|.-.|+. -|.+..+..
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~ 45 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR 45 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE
Confidence 34589999999999999999999976 256666644
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.26 E-value=0.067 Score=25.42 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhhCCC
Q psy7050 13 MVSLKVDNLTYRTTPDDLRRVFERCGE 39 (61)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~G~ 39 (61)
.-+|-|+.||+..+++.+.+.+...-.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~ 35 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPA 35 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCc
Confidence 368999999999999998887776533
No 216
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=82.08 E-value=6.2 Score=23.70 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=26.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccC
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRD 48 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~ 48 (61)
....++++ +|..+...+|.+.|+.||.+ .+.++.+
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd 473 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD 473 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC
Confidence 34566665 88888999999999999954 5666654
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=79.90 E-value=3.6 Score=20.15 Aligned_cols=34 Identities=9% Similarity=0.025 Sum_probs=26.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCeEEEEE
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYI 45 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~ 45 (61)
....-|.|-+.|+.. ...+...|++||.|.+...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~ 55 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM 55 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc
Confidence 345778888988884 5677789999999988765
No 218
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=77.52 E-value=4.5 Score=22.22 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=27.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccC
Q psy7050 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRD 48 (61)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~ 48 (61)
.-+.|+|+|+.++...+..++.. ..+....++.+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 45789999999999999998877 66777666544
No 219
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.89 E-value=4.1 Score=19.52 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=26.2
Q ss_pred CCCcEEEEecCCCCC-C----HHHHHHHhhhCCCeEEEEEc
Q psy7050 11 EGMVSLKVDNLTYRT-T----PDDLRRVFERCGEVGDIYIP 46 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~-~----~~~l~~~f~~~G~i~~~~~~ 46 (61)
+-+++|+|.||+..+ . .+.++++|..++.+......
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l 43 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF 43 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec
Confidence 345899999998865 2 25678999999877665443
No 220
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=70.27 E-value=1.8 Score=23.79 Aligned_cols=36 Identities=17% Similarity=0.042 Sum_probs=27.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCC
Q psy7050 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDR 49 (61)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 49 (61)
....|+|+|+.++..-|..++.....+....++.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Qk 150 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQN 150 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEEH
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEeeH
Confidence 456899999999999999998766566776665543
No 221
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=63.54 E-value=9.2 Score=20.65 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=23.2
Q ss_pred EEEEecCCCCCCHHHHHHHhhhCCCeEEEEEc
Q psy7050 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIP 46 (61)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~ 46 (61)
-+.|+|+|+.++...+..++.....+....++
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m 123 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMHFM 123 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEEEE
Confidence 57899999999988887777654445555444
No 222
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=62.52 E-value=2.2 Score=23.13 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=26.4
Q ss_pred EEEecCCCCCCHHHHHHHhhhCCCeEEEEEccCC
Q psy7050 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDR 49 (61)
Q Consensus 16 l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 49 (61)
..|+|+|+.++...|..++.....+....++.++
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Qk 132 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQK 132 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEEH
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEEeH
Confidence 3789999999999999888876666676665443
No 223
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=58.62 E-value=8 Score=20.80 Aligned_cols=33 Identities=15% Similarity=-0.050 Sum_probs=23.9
Q ss_pred EEEEecCCCCCCHHHHHHHhhhCCCeEEEEEcc
Q psy7050 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPR 47 (61)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~ 47 (61)
-+.|+|+|+.++...+..++.....+....++.
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~ 129 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCVPLAVFMV 129 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred cEEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence 478899999999998888887544444444443
No 224
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=57.32 E-value=1.1 Score=22.52 Aligned_cols=8 Identities=38% Similarity=0.866 Sum_probs=5.6
Q ss_pred ceeEEEEC
Q psy7050 54 SRGFAFVR 61 (61)
Q Consensus 54 ~~g~~fv~ 61 (61)
.+||+||+
T Consensus 20 ~kGfGFI~ 27 (148)
T 3ts2_A 20 RMGFGFLS 27 (148)
T ss_dssp TTTEEEEE
T ss_pred CCCeeEEe
Confidence 46788874
No 225
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=56.13 E-value=4.8 Score=18.07 Aligned_cols=8 Identities=25% Similarity=0.696 Sum_probs=6.3
Q ss_pred ceeEEEEC
Q psy7050 54 SRGFAFVR 61 (61)
Q Consensus 54 ~~g~~fv~ 61 (61)
.+||+||+
T Consensus 17 ~KGfGFI~ 24 (79)
T 2ytv_A 17 KDQFGFIN 24 (79)
T ss_dssp CSSEEEES
T ss_pred cccceeEe
Confidence 38899985
No 226
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=55.65 E-value=11 Score=21.68 Aligned_cols=22 Identities=18% Similarity=0.077 Sum_probs=17.9
Q ss_pred EEEEecCCCCCCHHHHHHHhhh
Q psy7050 15 SLKVDNLTYRTTPDDLRRVFER 36 (61)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~ 36 (61)
-..|+|||..++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4788999999998877777763
No 227
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=53.01 E-value=22 Score=18.24 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=26.2
Q ss_pred CCHHHHHHHhhhCCCeE---EEEEccCCCCCCceeEEEE
Q psy7050 25 TTPDDLRRVFERCGEVG---DIYIPRDRFTRESRGFAFV 60 (61)
Q Consensus 25 ~~~~~l~~~f~~~G~i~---~~~~~~~~~t~~~~g~~fv 60 (61)
.++++|+++-...|.+. +..+..|..+|..+.+||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 57889999988888653 3455656447888888874
No 228
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=51.06 E-value=4.4 Score=18.15 Aligned_cols=8 Identities=25% Similarity=0.945 Sum_probs=6.2
Q ss_pred ceeEEEEC
Q psy7050 54 SRGFAFVR 61 (61)
Q Consensus 54 ~~g~~fv~ 61 (61)
.+||+||+
T Consensus 19 ~kGfGFI~ 26 (79)
T 1h95_A 19 RNGYGFIN 26 (79)
T ss_dssp TTTEEEEE
T ss_pred CCCcEEEe
Confidence 47899984
No 229
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=50.79 E-value=4.4 Score=18.76 Aligned_cols=8 Identities=38% Similarity=0.920 Sum_probs=6.2
Q ss_pred ceeEEEEC
Q psy7050 54 SRGFAFVR 61 (61)
Q Consensus 54 ~~g~~fv~ 61 (61)
.+||+||+
T Consensus 19 ~KGfGFI~ 26 (90)
T 3ulj_A 19 RMGFGFIS 26 (90)
T ss_dssp TTTEEEEE
T ss_pred CCCeEEeE
Confidence 47899983
No 230
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=47.80 E-value=5.3 Score=17.46 Aligned_cols=8 Identities=50% Similarity=1.202 Sum_probs=5.9
Q ss_pred ceeEEEEC
Q psy7050 54 SRGFAFVR 61 (61)
Q Consensus 54 ~~g~~fv~ 61 (61)
.+||+||+
T Consensus 16 ~kGfGFI~ 23 (71)
T 3i2z_B 16 SKGFGFIT 23 (71)
T ss_dssp TTTEEEEE
T ss_pred CCCcEEEe
Confidence 47799974
No 231
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=52.03 E-value=4.2 Score=17.73 Aligned_cols=8 Identities=25% Similarity=0.941 Sum_probs=5.9
Q ss_pred ceeEEEEC
Q psy7050 54 SRGFAFVR 61 (61)
Q Consensus 54 ~~g~~fv~ 61 (61)
.+||+||+
T Consensus 15 ~kGfGFI~ 22 (70)
T 2lss_A 15 TKNFGFIE 22 (70)
Confidence 47888874
No 232
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=46.05 E-value=6.6 Score=18.00 Aligned_cols=7 Identities=29% Similarity=0.861 Sum_probs=5.6
Q ss_pred eeEEEEC
Q psy7050 55 RGFAFVR 61 (61)
Q Consensus 55 ~g~~fv~ 61 (61)
+||+||+
T Consensus 28 kGfGFI~ 34 (88)
T 2yty_A 28 DNFGFIE 34 (88)
T ss_dssp SSEEEEE
T ss_pred CCccEEe
Confidence 6899984
No 233
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=45.53 E-value=6.8 Score=18.28 Aligned_cols=8 Identities=25% Similarity=0.791 Sum_probs=6.1
Q ss_pred ceeEEEEC
Q psy7050 54 SRGFAFVR 61 (61)
Q Consensus 54 ~~g~~fv~ 61 (61)
.+||+||+
T Consensus 27 ~KGfGFI~ 34 (97)
T 2ytx_A 27 KEAFGFIE 34 (97)
T ss_dssp CSSEEEEE
T ss_pred eCCceEEe
Confidence 46899984
No 234
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=45.04 E-value=7 Score=17.97 Aligned_cols=7 Identities=14% Similarity=0.828 Sum_probs=5.8
Q ss_pred eeEEEEC
Q psy7050 55 RGFAFVR 61 (61)
Q Consensus 55 ~g~~fv~ 61 (61)
+||+||+
T Consensus 28 KGfGFI~ 34 (89)
T 1wfq_A 28 TSYGFIQ 34 (89)
T ss_dssp SSEEEEE
T ss_pred CCeeEEe
Confidence 7899984
No 235
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=42.49 E-value=13 Score=17.72 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=7.8
Q ss_pred HHHHHHhhhCC
Q psy7050 28 DDLRRVFERCG 38 (61)
Q Consensus 28 ~~l~~~f~~~G 38 (61)
..|+++|.+||
T Consensus 91 ~~ire~fqKYG 101 (101)
T 4aj5_1 91 MKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 45788888887
No 236
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=40.25 E-value=7.9 Score=19.61 Aligned_cols=8 Identities=38% Similarity=0.908 Sum_probs=6.2
Q ss_pred ceeEEEEC
Q psy7050 54 SRGFAFVR 61 (61)
Q Consensus 54 ~~g~~fv~ 61 (61)
.+|||||+
T Consensus 73 ~KGfGFI~ 80 (147)
T 3aqq_A 73 SKGHGFIT 80 (147)
T ss_dssp TTTEEEEE
T ss_pred CCCeEEec
Confidence 47899984
No 237
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=38.93 E-value=30 Score=15.70 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=16.4
Q ss_pred ecCCCCCCHHHHHHHhhhC
Q psy7050 19 DNLTYRTTPDDLRRVFERC 37 (61)
Q Consensus 19 ~~l~~~~~~~~l~~~f~~~ 37 (61)
|.+...++++.|.+++...
T Consensus 50 Gqi~~ki~e~~L~~lL~~i 68 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRV 68 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 5788899999999999875
No 238
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=37.82 E-value=13 Score=13.24 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=12.4
Q ss_pred cCCCCCCHHHHHHHhhhCCCe
Q psy7050 20 NLTYRTTPDDLRRVFERCGEV 40 (61)
Q Consensus 20 ~l~~~~~~~~l~~~f~~~G~i 40 (61)
|.|+++.-.--.+-|.+||.+
T Consensus 2 naPFeiGi~ls~~~y~~yG~~ 22 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRA 22 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSC
T ss_pred CCceeEeeEecHHHHHHHhHH
Confidence 445665555555667777764
No 239
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=36.40 E-value=5.5 Score=18.37 Aligned_cols=7 Identities=43% Similarity=1.265 Sum_probs=5.6
Q ss_pred eeEEEEC
Q psy7050 55 RGFAFVR 61 (61)
Q Consensus 55 ~g~~fv~ 61 (61)
+||+||+
T Consensus 18 KGfGFI~ 24 (89)
T 1x65_A 18 DGFGFIK 24 (89)
T ss_dssp TTBCEEE
T ss_pred CCcceee
Confidence 7899984
No 240
>1wvq_A Hypothetical protein PAE2307; phosphorylated histidine, structural genomics, unknown funct; HET: NEP; 1.45A {Pyrobaculum aerophilum} PDB: 2gl0_A* 2jb7_A*
Probab=34.06 E-value=52 Score=17.05 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=24.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGE 39 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~ 39 (61)
+.++++++.+|.-++--|-+||.+.+....+
T Consensus 14 e~Pe~~NvI~GqsHFIKTVEDl~Ealv~svP 44 (167)
T 1wvq_A 14 PIPQGTNVIIGQAHFIKTVEDLYEALVTSVP 44 (167)
T ss_dssp CCCTTCEEEEEECCSTTHHHHHHHHHHTTCT
T ss_pred cCCCCceEEEeeccccccHHHHHHHHhhcCC
Confidence 3456689999999998888999988865443
No 241
>2ekm_A Hypothetical protein ST1511; NPPSFA, national project on protein ST and functional analyses, riken structural genomics/proteomi initiative; 2.06A {Sulfolobus tokodaii}
Probab=34.02 E-value=52 Score=16.98 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=24.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCCC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGE 39 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~ 39 (61)
+.++++++.+|.-++--|-+||.+.+....+
T Consensus 11 e~Pe~~NvI~GqsHFIKTvEDl~Ealv~svP 41 (162)
T 2ekm_A 11 EIPEGTNVIIGQSHFIKTVEDLYETLASSSP 41 (162)
T ss_dssp CCCTTEEEEEEECCSTTHHHHHHHHHHTTCS
T ss_pred cCCCCceEEEeeccccccHHHHHHHHhhcCC
Confidence 3456689999999998888999988865543
No 242
>1vgg_A Conserved hypothetical protein TT1634; thermus thermophilus HB8, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.75A {Thermus thermophilus} SCOP: d.256.1.1
Probab=33.40 E-value=53 Score=16.92 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=23.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERC 37 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~ 37 (61)
+.++++++.+|.-++--|-+||.+.+...
T Consensus 9 e~Pe~~NvI~GqsHFIKTVEDl~Ealv~s 37 (161)
T 1vgg_A 9 EKPENLNVILGQAHFIKTVEDLHEALVTA 37 (161)
T ss_dssp CCCTTCEEEEEECCSTTHHHHHHHHHHHH
T ss_pred cCCCCceEEEeeccccccHHHHHHHHhhc
Confidence 34566899999999988889998887643
No 243
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=33.08 E-value=33 Score=17.10 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=19.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhhCCCeEE
Q psy7050 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGD 42 (61)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~ 42 (61)
.-|.|-+.|.... ..+.+.|++||.|.+
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE 35 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILE 35 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCS
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEee
Confidence 4566777766644 556678999998765
No 244
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=32.23 E-value=22 Score=12.20 Aligned_cols=12 Identities=17% Similarity=0.675 Sum_probs=8.6
Q ss_pred HHHHHHHhhhCC
Q psy7050 27 PDDLRRVFERCG 38 (61)
Q Consensus 27 ~~~l~~~f~~~G 38 (61)
...++.+|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 366778888775
No 245
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=31.58 E-value=38 Score=15.40 Aligned_cols=19 Identities=16% Similarity=0.337 Sum_probs=15.7
Q ss_pred ecCCCCCCHHHHHHHhhhC
Q psy7050 19 DNLTYRTTPDDLRRVFERC 37 (61)
Q Consensus 19 ~~l~~~~~~~~l~~~f~~~ 37 (61)
|.+...++++.|.+++...
T Consensus 48 Gqi~~ki~e~~L~~lL~~i 66 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGI 66 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 5677889999999998764
No 246
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=31.49 E-value=39 Score=15.44 Aligned_cols=29 Identities=14% Similarity=0.054 Sum_probs=21.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCe
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEV 40 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i 40 (61)
=.++++++.+... .....|+++....|..
T Consensus 16 l~g~~i~isg~~~-~~r~~l~~li~~~Gg~ 44 (107)
T 3l3e_A 16 LHKVVVCVSKKLS-KKQSELNGIAASLGAD 44 (107)
T ss_dssp TTTCEEEECGGGG-GGHHHHHHHHHHTTCE
T ss_pred CCCeEEEEeCCCh-HhHHHHHHHHHHcCCE
Confidence 3468888887655 5778899998888753
No 247
>1rlh_A Conserved hypothetical protein; structural genomics, T. acidophilum, PSI, protein structure initiative; 1.80A {Thermoplasma acidophilum} SCOP: d.256.1.1
Probab=31.21 E-value=60 Score=16.89 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=24.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhCC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCG 38 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G 38 (61)
+.++++++.+|.-++--|-+||.+.+....
T Consensus 22 e~Pe~~NvIlGqsHFIKTVEDl~Ealv~sv 51 (173)
T 1rlh_A 22 VIPAEANIIVGYSHFIKTVEDLNEIIRTHV 51 (173)
T ss_dssp CCCTTCEEEEEEESSCCCTHHHHHHTGGGS
T ss_pred cCCCCceEEEeeccccccHHHHHHHHhhcC
Confidence 456678999999999888899988876543
No 248
>2rd7_A Complement component C8 alpha chain; membrane attack system, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; 2.15A {Homo sapiens} PDB: 2qqh_A
Probab=31.05 E-value=52 Score=18.84 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=16.1
Q ss_pred cCCCCCCHHHHHHHhhhCCC
Q psy7050 20 NLTYRTTPDDLRRVFERCGE 39 (61)
Q Consensus 20 ~l~~~~~~~~l~~~f~~~G~ 39 (61)
.||...+...+..++..||.
T Consensus 195 ~LP~~y~~~~y~~fI~~yGT 214 (367)
T 2rd7_A 195 ELPDQYNYGMYAKFINDYGT 214 (367)
T ss_dssp TSCSSCCHHHHHHHHHHHCS
T ss_pred hCcccCCHHHHHHHHHHcCc
Confidence 46777777888889999996
No 249
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=28.51 E-value=42 Score=14.94 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=13.0
Q ss_pred CHHHHHHHhhhCCCeEE
Q psy7050 26 TPDDLRRVFERCGEVGD 42 (61)
Q Consensus 26 ~~~~l~~~f~~~G~i~~ 42 (61)
|-.|+++++.+||.+..
T Consensus 4 tlYDVqQLLK~fG~~IY 20 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVY 20 (72)
T ss_dssp SHHHHHHHHHTTTCCCC
T ss_pred cHHHHHHHHHHCCEEEE
Confidence 45688999999997543
No 250
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=27.86 E-value=55 Score=15.35 Aligned_cols=29 Identities=7% Similarity=-0.196 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCe
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEV 40 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i 40 (61)
.+.++|+.+.-+......|+..+..||..
T Consensus 9 ~g~~f~l~~~~p~~~r~~l~ryiia~GG~ 37 (104)
T 3pc6_A 9 EGKHFFLYGEFPGDERRRLIRYVTAFNGE 37 (104)
T ss_dssp TTCEEEEESCCSTTHHHHHHHHHHHTTCE
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHHHcCCE
Confidence 46899998876555667788888888753
No 251
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=27.16 E-value=41 Score=15.79 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=14.3
Q ss_pred EecCCCCCCHHHHHHHh-hhCCC
Q psy7050 18 VDNLTYRTTPDDLRRVF-ERCGE 39 (61)
Q Consensus 18 v~~l~~~~~~~~l~~~f-~~~G~ 39 (61)
|.++...+|-.|+-..+ ...|.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 34678888888776654 43464
No 252
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=26.91 E-value=48 Score=14.37 Aligned_cols=29 Identities=10% Similarity=-0.010 Sum_probs=21.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCCe
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEV 40 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i 40 (61)
=.+.++++.+.... ..+.|+++...+|..
T Consensus 8 f~g~~~~i~g~~~~-~~~~l~~~i~~~GG~ 36 (92)
T 4id3_A 8 FKNCVIYINGYTKP-GRLQLHEMIVLHGGK 36 (92)
T ss_dssp TTTCEEEECSCCSS-CHHHHHHHHHHTTCE
T ss_pred cCCEEEEEeCCCCc-CHHHHHHHHHHCCCE
Confidence 35689999875432 578899988888753
No 253
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=25.35 E-value=14 Score=15.70 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=13.0
Q ss_pred EecCCCCCCHHHHHHHhhhC
Q psy7050 18 VDNLTYRTTPDDLRRVFERC 37 (61)
Q Consensus 18 v~~l~~~~~~~~l~~~f~~~ 37 (61)
+.|+|..+..+.+++.+..|
T Consensus 43 lenvprgtktahirealrry 62 (70)
T 2q2k_A 43 LENVPRGTKTAHIREALRRY 62 (70)
T ss_dssp HTTSCTTCHHHHHHHHHHHH
T ss_pred HHcCCCccchHHHHHHHHHH
Confidence 34677777767777666544
No 254
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=25.30 E-value=50 Score=14.07 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=13.6
Q ss_pred ecCCCCCCHHHHHHHhhh
Q psy7050 19 DNLTYRTTPDDLRRVFER 36 (61)
Q Consensus 19 ~~l~~~~~~~~l~~~f~~ 36 (61)
-+|+..++.++|+..|..
T Consensus 9 Lgv~~~as~~~Ik~ayr~ 26 (77)
T 1hdj_A 9 LGLARGASDEEIKRAYRR 26 (77)
T ss_dssp HTCCTTCCHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHH
Confidence 367788888888877754
No 255
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.17 E-value=51 Score=14.10 Aligned_cols=19 Identities=16% Similarity=0.501 Sum_probs=14.8
Q ss_pred EecCCCCCCHHHHHHHhhh
Q psy7050 18 VDNLTYRTTPDDLRRVFER 36 (61)
Q Consensus 18 v~~l~~~~~~~~l~~~f~~ 36 (61)
|-+|+..++.++|+..|..
T Consensus 12 iLgv~~~as~~eIk~ayr~ 30 (78)
T 2ctp_A 12 ILGVSRGASDEDLKKAYRR 30 (78)
T ss_dssp HHTCCTTCCHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHH
Confidence 3478888999999888764
No 256
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=24.55 E-value=68 Score=15.34 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=19.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhhCCC
Q psy7050 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGE 39 (61)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~ 39 (61)
=.++++|+.+.+ ......|..+...+|.
T Consensus 41 F~g~~i~i~G~~-~~~~~~L~~~i~~~Gg 68 (132)
T 1wf6_A 41 LDGCRIYLCGFS-GRKLDKLRRLINSGGG 68 (132)
T ss_dssp TTTCEEEEESCC-SHHHHHHHHHHHHTTC
T ss_pred cCCEEEEEECCC-hHHHHHHHHHHHHCCC
Confidence 346899998774 2345667778878775
No 257
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=24.24 E-value=64 Score=14.91 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=22.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhhC
Q psy7050 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERC 37 (61)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~ 37 (61)
..+.+..+.+.+.+..++.++..+++..|
T Consensus 15 ~lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 15 TLNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp -CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred ccCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 45667889998988888888877777665
No 258
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=23.92 E-value=23 Score=16.38 Aligned_cols=8 Identities=38% Similarity=1.132 Sum_probs=5.8
Q ss_pred ceeEEEEC
Q psy7050 54 SRGFAFVR 61 (61)
Q Consensus 54 ~~g~~fv~ 61 (61)
.+||+||+
T Consensus 27 ~kGfGFI~ 34 (101)
T 2bh8_A 27 DKGFGFIT 34 (101)
T ss_dssp GGTEEEEE
T ss_pred CCCCEEEE
Confidence 47788874
No 259
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.89 E-value=55 Score=14.00 Aligned_cols=19 Identities=0% Similarity=0.303 Sum_probs=14.7
Q ss_pred EecCCCCCCHHHHHHHhhh
Q psy7050 18 VDNLTYRTTPDDLRRVFER 36 (61)
Q Consensus 18 v~~l~~~~~~~~l~~~f~~ 36 (61)
|-+|+..++.++|+..|..
T Consensus 12 iLgv~~~a~~~~Ik~ayr~ 30 (79)
T 2dn9_A 12 ILGVPRNASQKEIKKAYYQ 30 (79)
T ss_dssp HHTCCTTCCHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHH
Confidence 3478888999999887754
No 260
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=23.41 E-value=55 Score=13.82 Aligned_cols=19 Identities=11% Similarity=0.392 Sum_probs=14.5
Q ss_pred EecCCCCCCHHHHHHHhhh
Q psy7050 18 VDNLTYRTTPDDLRRVFER 36 (61)
Q Consensus 18 v~~l~~~~~~~~l~~~f~~ 36 (61)
|-+|+..++.++|+..|..
T Consensus 13 iLgl~~~a~~~eIk~ayr~ 31 (73)
T 2och_A 13 VLGVKPDASDNELKKAYRK 31 (73)
T ss_dssp HHTCCTTCCHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHH
Confidence 3478888999999887754
No 261
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=23.04 E-value=91 Score=18.98 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=15.7
Q ss_pred cCCCCCCHHHHHHHhhhCCC
Q psy7050 20 NLTYRTTPDDLRRVFERCGE 39 (61)
Q Consensus 20 ~l~~~~~~~~l~~~f~~~G~ 39 (61)
.||...+......++..||.
T Consensus 269 ~LP~~y~~~~y~~fi~~yGT 288 (537)
T 3ojy_B 269 RLPLEYSYGEYRDLFRDFGT 288 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHCS
T ss_pred hcccccCHHHHHHHHHhcCc
Confidence 46777777778888899985
No 262
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=22.93 E-value=63 Score=15.74 Aligned_cols=20 Identities=10% Similarity=0.330 Sum_probs=16.6
Q ss_pred ecCCCCCCHHHHHHHhhhCC
Q psy7050 19 DNLTYRTTPDDLRRVFERCG 38 (61)
Q Consensus 19 ~~l~~~~~~~~l~~~f~~~G 38 (61)
|.|...++++.|.+++....
T Consensus 80 Gqi~~kItee~Lk~lL~~i~ 99 (118)
T 2cru_A 80 GQLSEKVSEQGLIEILKKVS 99 (118)
T ss_dssp TCCCSCBCHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHH
Confidence 56788899999999998753
No 263
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=22.79 E-value=87 Score=19.20 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=15.8
Q ss_pred cCCCCCCHHHHHHHhhhCCC
Q psy7050 20 NLTYRTTPDDLRRVFERCGE 39 (61)
Q Consensus 20 ~l~~~~~~~~l~~~f~~~G~ 39 (61)
.||...+......++..||.
T Consensus 290 ~LP~~y~~~~y~~fi~~yGT 309 (554)
T 3ojy_A 290 ELPDQYNYGMYAKFINDYGT 309 (554)
T ss_dssp TCCSSCCHHHHHHHHHHHCS
T ss_pred hCCccCCHHHHHHHHHhcCc
Confidence 46777777788888999985
No 264
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=22.27 E-value=61 Score=14.89 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=13.8
Q ss_pred CHHHHHHHhhhCCCeEEE
Q psy7050 26 TPDDLRRVFERCGEVGDI 43 (61)
Q Consensus 26 ~~~~l~~~f~~~G~i~~~ 43 (61)
+++.+.+.|+..|.|..-
T Consensus 5 ~~~~i~e~l~~lg~i~~r 22 (105)
T 2od0_A 5 ILKDSMKLFEALGTIKSR 22 (105)
T ss_dssp HHHHHHHHHGGGSCCEEE
T ss_pred HHHHHHHHHhccCCceEe
Confidence 466788899988887653
No 265
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.71 E-value=66 Score=14.17 Aligned_cols=18 Identities=6% Similarity=0.309 Sum_probs=14.0
Q ss_pred ecCCCCCCHHHHHHHhhh
Q psy7050 19 DNLTYRTTPDDLRRVFER 36 (61)
Q Consensus 19 ~~l~~~~~~~~l~~~f~~ 36 (61)
-+|+..++.++|+..|..
T Consensus 13 Lgv~~~as~~eIk~ayr~ 30 (88)
T 2ctr_A 13 LGVPKSASERQIKKAFHK 30 (88)
T ss_dssp HTCCTTCCHHHHHHHHHH
T ss_pred cCcCCCCCHHHHHHHHHH
Confidence 467888899988877754
No 266
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=21.49 E-value=67 Score=14.15 Aligned_cols=19 Identities=11% Similarity=0.434 Sum_probs=15.0
Q ss_pred EecCCCCCCHHHHHHHhhh
Q psy7050 18 VDNLTYRTTPDDLRRVFER 36 (61)
Q Consensus 18 v~~l~~~~~~~~l~~~f~~ 36 (61)
|-+|+..++.++|+..|..
T Consensus 22 iLgv~~~as~~eIk~ayr~ 40 (88)
T 2cug_A 22 VLGVSRTASQADIKKAYKK 40 (88)
T ss_dssp HHTCCTTCCHHHHHHHHHH
T ss_pred HcCcCCCCCHHHHHHHHHH
Confidence 4478889999999887754
No 267
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=21.46 E-value=47 Score=15.57 Aligned_cols=37 Identities=11% Similarity=0.304 Sum_probs=19.3
Q ss_pred CCCHHHHHHHhhh-CCCeEEEEEccCC----CCCCceeEEEE
Q psy7050 24 RTTPDDLRRVFER-CGEVGDIYIPRDR----FTRESRGFAFV 60 (61)
Q Consensus 24 ~~~~~~l~~~f~~-~G~i~~~~~~~~~----~t~~~~g~~fv 60 (61)
..+..++++.+.. ++.-.++.++..- ..|+..|||.|
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I 71 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI 71 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE
Confidence 4567777766654 4432223333222 33556778765
No 268
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=20.78 E-value=78 Score=15.60 Aligned_cols=19 Identities=16% Similarity=0.337 Sum_probs=15.4
Q ss_pred ecCCCCCCHHHHHHHhhhC
Q psy7050 19 DNLTYRTTPDDLRRVFERC 37 (61)
Q Consensus 19 ~~l~~~~~~~~l~~~f~~~ 37 (61)
|.|...++++.|.+++...
T Consensus 83 Gql~~kVsE~~Lk~iL~~v 101 (127)
T 2jxn_A 83 NNVTHKITEAEIVSILNGI 101 (127)
T ss_dssp SCCCSCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 5678889999999998653
No 269
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.56 E-value=75 Score=14.37 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=15.6
Q ss_pred EecCCCCCCHHHHHHHhhh
Q psy7050 18 VDNLTYRTTPDDLRRVFER 36 (61)
Q Consensus 18 v~~l~~~~~~~~l~~~f~~ 36 (61)
|-+|+..++.++|+..|..
T Consensus 22 vLgv~~~as~~eIk~ayr~ 40 (99)
T 2yua_A 22 LLGVPSTATQAQIKAAYYR 40 (99)
T ss_dssp HHTCCTTCCHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHH
Confidence 5688999999999888754
No 270
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.51 E-value=68 Score=13.80 Aligned_cols=19 Identities=5% Similarity=0.433 Sum_probs=15.0
Q ss_pred EecCCCCCCHHHHHHHhhh
Q psy7050 18 VDNLTYRTTPDDLRRVFER 36 (61)
Q Consensus 18 v~~l~~~~~~~~l~~~f~~ 36 (61)
|-+|+..++.++|+..|..
T Consensus 14 iLgv~~~as~~eIk~ayr~ 32 (82)
T 2ej7_A 14 VLDVPRQASSEAIKKAYRK 32 (82)
T ss_dssp HTTCCTTCCHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHH
Confidence 4578888999999887754
No 271
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.18 E-value=86 Score=14.90 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=21.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhhCCCe
Q psy7050 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEV 40 (61)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i 40 (61)
.+.++++.+.. ....+.|+.+....|..
T Consensus 24 ~g~~i~itG~~-~~~r~~l~~~i~~~Gg~ 51 (129)
T 2d8m_A 24 QGVVVVLSGFQ-NPFRSELRDKALELGAK 51 (129)
T ss_dssp TTEEEEEESCC-TTHHHHHHHHHHHTTEE
T ss_pred CCeEEEEeCCC-cHHHHHHHHHHHHcCCE
Confidence 46788888876 45678899998888853
No 272
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=20.09 E-value=92 Score=15.18 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=17.8
Q ss_pred hCCCeEEEEEccCCCCCCceeEEE
Q psy7050 36 RCGEVGDIYIPRDRFTRESRGFAF 59 (61)
Q Consensus 36 ~~G~i~~~~~~~~~~t~~~~g~~f 59 (61)
.||.-..+.+..|+.||...-|+.
T Consensus 38 ~~g~~~~~~V~id~~tG~~~v~~~ 61 (129)
T 2kwp_A 38 KYEQEIDVRVQIDRKSGDFDTFRR 61 (129)
T ss_dssp HHCSCCCEEEEEETTTTEEEEEEE
T ss_pred hcCCccceEEEEECCCCeEEEEEE
Confidence 478767788888888887766653
Done!