BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7051
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/104 (81%), Positives = 93/104 (89%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MSYGRPPP +EGM SLKVDNLTYRT+PD LRRVFE+ G VGD+YIPRDR+T+ESRGFAFV
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 60
Query: 61 RFFDKRDAEDALDAMDGRMLDGRELRVQMARYGRPPSSSRSRGG 104
RF DKRDAEDA+DAMDG +LDGRELRVQMARYGRPP S SR G
Sbjct: 61 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes
GN=SRSF2 PE=2 SV=3
Length = 221
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/98 (83%), Positives = 90/98 (91%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MSYGRPPP +EGM SLKVDNLTYRT+PD LRRVFE+ G VGD+YIPRDR+T+ESRGFAFV
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 60
Query: 61 RFFDKRDAEDALDAMDGRMLDGRELRVQMARYGRPPSS 98
RF DKRDAEDA+DAMDG +LDGRELRVQMARYGRPP S
Sbjct: 61 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 98
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2
SV=1
Length = 221
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/100 (82%), Positives = 90/100 (90%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MSYGRPPP +EGM SLKVDNLTYRT+PD LRRVFE+ G VGD+YIPRDR+T+ESRGFAFV
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 60
Query: 61 RFFDKRDAEDALDAMDGRMLDGRELRVQMARYGRPPSSSR 100
RF DKRDAEDA+DAMDG +LDGRELRVQMARYGRPP S
Sbjct: 61 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHH 100
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 82/100 (82%), Positives = 90/100 (90%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MSYGRPPP +EGM SLKVDNLTYRT+PD LRRVFE+ G VGD+YIPRDR+T+ESRGFAFV
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 60
Query: 61 RFFDKRDAEDALDAMDGRMLDGRELRVQMARYGRPPSSSR 100
RF DKRDAEDA+DAMDG +LDGRELRVQMARYGRPP S
Sbjct: 61 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHH 100
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 82/100 (82%), Positives = 90/100 (90%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MSYGRPPP +EGM SLKVDNLTYRT+PD LRRVFE+ G VGD+YIPRDR+T+ESRGFAFV
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 60
Query: 61 RFFDKRDAEDALDAMDGRMLDGRELRVQMARYGRPPSSSR 100
RF DKRDAEDA+DAMDG +LDGRELRVQMARYGRPP S
Sbjct: 61 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHH 100
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 82/100 (82%), Positives = 90/100 (90%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MSYGRPPP +EGM SLKVDNLTYRT+PD LRRVFE+ G VGD+YIPRDR+T+ESRGFAFV
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 60
Query: 61 RFFDKRDAEDALDAMDGRMLDGRELRVQMARYGRPPSSSR 100
RF DKRDAEDA+DAMDG +LDGRELRVQMARYGRPP S
Sbjct: 61 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHH 100
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2 PE=2
SV=3
Length = 221
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 82/100 (82%), Positives = 90/100 (90%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MSYGRPPP +EGM SLKVDNLTYRT+PD LRRVFE+ G VGD+YIPRDR+T+ESRGFAFV
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 60
Query: 61 RFFDKRDAEDALDAMDGRMLDGRELRVQMARYGRPPSSSR 100
RF DKRDAEDA+DAMDG +LDGRELRVQMARYGRPP S
Sbjct: 61 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHH 100
>sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8
PE=1 SV=1
Length = 282
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 80/94 (85%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MS GRPPP ++GM++LKVDNLTYRT+PD LRRVFE+ G VGD+YIPR+ T+ RGFAFV
Sbjct: 1 MSCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFV 60
Query: 61 RFFDKRDAEDALDAMDGRMLDGRELRVQMARYGR 94
RF D+RDA+DA AMDG LDGRELRVQ+ARYGR
Sbjct: 61 RFHDRRDAQDAEAAMDGAELDGRELRVQVARYGR 94
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis
elegans GN=rsp-4 PE=3 SV=1
Length = 196
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 78/91 (85%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD 64
R P I G+ SLK+DNL+Y+TTP+DLRR FER G++GD++IPRD+++R+S+GF FVRF++
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYE 69
Query: 65 KRDAEDALDAMDGRMLDGRELRVQMARYGRP 95
+RDAE ALD DG+++DGRELRV +A+Y RP
Sbjct: 70 RRDAEHALDRTDGKLVDGRELRVTLAKYDRP 100
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 5/89 (5%)
Query: 3 YGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRF 62
Y RPP SL + N+ T P+DLRR F R G + D+YIP D +TR RGFA+V+F
Sbjct: 4 YTRPP-----NTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQF 58
Query: 63 FDKRDAEDALDAMDGRMLDGRELRVQMAR 91
D RDAEDAL ++ + + GR++ +Q A+
Sbjct: 59 EDVRDAEDALYNLNRKWVCGRQIEIQFAQ 87
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 6/105 (5%)
Query: 3 YGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRF 62
Y RPP SL V N+ T +DLRR F R G + D+Y+P D +TR RGFA+V+F
Sbjct: 4 YLRPP-----NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 58
Query: 63 FDKRDAEDALDAMDGRMLDGRELRVQMARYGR-PPSSSRSRGGRD 106
D RDAEDAL +D + + GR++ +Q A+ R P+ +++ GR+
Sbjct: 59 EDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRN 103
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 6/105 (5%)
Query: 3 YGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRF 62
Y RPP SL V N+ T +DLRR F R G + D+Y+P D +TR RGFA+V+F
Sbjct: 4 YLRPP-----NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 58
Query: 63 FDKRDAEDALDAMDGRMLDGRELRVQMARYGR-PPSSSRSRGGRD 106
D RDAEDAL +D + + GR++ +Q A+ R P+ +++ GR+
Sbjct: 59 EDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRN 103
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 49/77 (63%)
Query: 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73
SL V NL + +DLR+ FE+ G V DIY+PRD +T + RGF FV+F D DA DA
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 74 AMDGRMLDGRELRVQMA 90
MDG +L GREL V A
Sbjct: 96 HMDGYLLLGRELTVVFA 112
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 51/75 (68%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
L V L + TT + L +VF + G+V ++ + +DR ++ SRGF FV F + DA+DA+ AM
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 76 DGRMLDGRELRVQMA 90
+G+ +DGR++RV A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
L V L++ T L +VF + G++ ++ + +DR T+ SRGF FV F + DA+DA+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 76 DGRMLDGRELRVQMARYGRPPSSSRSRG 103
+G+ +DGR++RV A S +RSRG
Sbjct: 68 NGKSVDGRQIRVDQA---GKSSDNRSRG 92
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
L V L++ T L +VF + G++ ++ + +DR T+ SRGF FV F + DA+DA+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 76 DGRMLDGRELRVQMARYGRPPSSSRSRG 103
+G+ +DGR++RV A S +RSRG
Sbjct: 68 NGKSVDGRQIRVDQA---GKSSDNRSRG 92
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
L V L++ T L +VF + G++ ++ + +DR T+ SRGF FV F + DA+DA+ AM
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 76 DGRMLDGRELRVQMARYGRPPSSSRSRG 103
+G+ +DGR++RV A S +RSRG
Sbjct: 68 NGKSVDGRQIRVDQA---GKSSDNRSRG 92
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
L V L++ T L +VF + G++ ++ + +DR T+ SRGF FV F + DA+DA+ AM
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 76 DGRMLDGRELRVQMARYGRPPSSSRSRG 103
+G+ +DGR++RV A S +RSRG
Sbjct: 68 NGKSVDGRQIRVDQA---GKSSDNRSRG 92
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
L V L++ T L +VF + G++ ++ + +DR T+ SRGF FV F + DA+DA+ AM
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 76 DGRMLDGRELRVQMARYGRPPSSSRSRG 103
+G+ +DGR++RV A S +RSRG
Sbjct: 68 NGKSVDGRQIRVDQA---GKSSDNRSRG 92
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
L + L + T + L +VF + G++ ++ + +DR T+ SRGF FV F + DA+DA+ AM
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 76 DGRMLDGRELRVQMA 90
+G+ +DGR++RV A
Sbjct: 67 NGKAVDGRQIRVDQA 81
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
L + L + T D L + F + G + ++ + +DR T+ SRGF FV F + DA+DA+ AM
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 76 DGRMLDGRELRVQMA 90
+G+ +DGR++RV A
Sbjct: 67 NGKSVDGRQIRVDQA 81
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 9/97 (9%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
+ + L +T L+ +F R G V + + RDR T++SRGFAF+ F DA++A+ M
Sbjct: 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKEM 69
Query: 76 DGRMLDGRELRVQMAR---------YGRPPSSSRSRG 103
+G +LDG+ ++V+ AR RPPS SR+RG
Sbjct: 70 NGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRG 106
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
L V L++ T L VF + G++ ++ + +DR T+ SRGF FV F + DA+DA+ M
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 76 DGRMLDGRELRVQMA 90
+G+ +DGR++RV A
Sbjct: 68 NGKTVDGRQIRVDQA 82
>sp|O35698|RBY1A_MOUSE RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Mus
musculus GN=Rbmy1a1 PE=1 SV=2
Length = 380
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 9/97 (9%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
+ + L +T L+ +F R G V + + RDR T++SRGFAF+ F DA++A+ M
Sbjct: 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEM 69
Query: 76 DGRMLDGRELRVQMAR---------YGRPPSSSRSRG 103
+G +LDG+ ++V+ AR RPPS SR+RG
Sbjct: 70 NGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRG 106
>sp|Q6C747|EIF3G_YARLI Eukaryotic translation initiation factor 3 subunit G OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TIF35 PE=3 SV=1
Length = 294
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73
++L+V NL+ T DDLRR+F + G + +Y+ +DR T RGFAFV + K A+ AL+
Sbjct: 214 LTLRVTNLSEEATDDDLRRMFGKYGMINRVYVAKDRDTGRPRGFAFVTYTLKSHAQAALE 273
Query: 74 AMDGRMLDGRELRVQMAR 91
AMDG D ++V ++
Sbjct: 274 AMDGHGFDNLIMKVDYSK 291
>sp|Q9P383|NCBP2_SCHPO Nuclear cap-binding protein subunit 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cbc2 PE=3 SV=1
Length = 182
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 18/130 (13%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
+ V NL++ TT + + +F +CGE+ I + DRFT+ GF FV +F+ +DA D+L
Sbjct: 33 CVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKY 92
Query: 75 MDGRMLDGRELRVQMA-------RYGRPPSSSRSRGGRDRDRRRDR------SRSRDRRY 121
+ LD R +R + +YGR S GG+ RD R+ +++R+
Sbjct: 93 ISRTSLDERIIRADLDHGYEEGRQYGRGAS-----GGQVRDEMREEFDPGRGGYAKNRQP 147
Query: 122 TRSRSFSSRS 131
T SR ++ S
Sbjct: 148 TSSRQLANYS 157
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
S+ V N+ Y T ++L F CG V + I D+F+ +GFA++ F DK +L A
Sbjct: 173 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-A 231
Query: 75 MDGRMLDGRELRVQMARYGRPPSSSRSRG---GRDRDRRRDRSRSRDRRYTRSRSFSSRS 131
+D + GR+++V R RP S+ RG R R R + + SR R Y+ F+SR
Sbjct: 232 LDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYS---GFNSRP 288
Query: 132 R 132
R
Sbjct: 289 R 289
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
S+ V N+ Y T ++L F CG V + I D+F+ +GFA++ F DK +L A
Sbjct: 169 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-A 227
Query: 75 MDGRMLDGRELRVQMARYGRPPSSSRSRGGRDRDRRRDRSRSRDRRYTRSRS-----FSS 129
+D + GR+++V R RP S+ DR R R R+R Y SRS F+S
Sbjct: 228 LDESLFRGRQIKVIPKRTNRPGIST-----TDRGFPRSRYRARTTNYNSSRSRFYSGFNS 282
Query: 130 RSR 132
R R
Sbjct: 283 RPR 285
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
S+ V N+ Y T ++L F CG V + I D+F+ +GFA++ F DK +L A
Sbjct: 173 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-A 231
Query: 75 MDGRMLDGRELRVQMARYGRPPSSSRSRG---GRDRDRRRDRSRSRDRRYTRSRSFSSRS 131
+D + GR+++V R RP S+ RG R R R + + SR R Y+ F+SR
Sbjct: 232 LDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYS---GFNSRP 288
Query: 132 R 132
R
Sbjct: 289 R 289
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%)
Query: 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73
L V L+ TT DLR VF + G + D+ I D+ +R SRGFAFV F + DA++A +
Sbjct: 118 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 177
Query: 74 AMDGRMLDGRELRVQMARYGRP 95
+G LDGR +RV + RP
Sbjct: 178 RANGMELDGRRIRVDFSITKRP 199
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%)
Query: 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73
L V L+ TT DLR VF + G + D+ I D+ +R SRGFAFV F + DA++A +
Sbjct: 118 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 177
Query: 74 AMDGRMLDGRELRVQMARYGRP 95
+G LDGR +RV + RP
Sbjct: 178 RANGMELDGRRIRVDFSITKRP 199
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%)
Query: 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73
L V L+ TT DLR VF + G + D+ I D+ +R SRGFAFV F + DA++A +
Sbjct: 118 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 177
Query: 74 AMDGRMLDGRELRVQMARYGRP 95
+G LDGR +RV + RP
Sbjct: 178 RANGMELDGRRIRVDFSITKRP 199
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%)
Query: 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73
L V L+ TT DLR VF + G + D+ I D+ +R SRGFAFV F + DA++A +
Sbjct: 118 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 177
Query: 74 AMDGRMLDGRELRVQMARYGRP 95
+G LDGR +RV + RP
Sbjct: 178 RANGMELDGRRIRVDFSITKRP 199
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
V +L+ T +D++ F G + D + +D T +S+G+ FV FF+K DAE+A+ M G
Sbjct: 110 VGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 169
Query: 78 RMLDGRELRVQMARYGRPPSSSRSRGGRDRDRRRDRSRSR 117
+ L GR++R A +PP+ + + D S+
Sbjct: 170 QWLGGRQIRTNWATR-KPPAPKSTYESNTKQLSYDEVVSQ 208
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
+L V NL+ T + ++F + G + + D T + + FV F + R A AL A
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 75 MDGRMLDGRELRVQMA 90
M+GR + G+E++V A
Sbjct: 66 MNGRKIMGKEVKVNWA 81
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
V +L+ T +D++ F G + D + +D T +S+G+ FV FF+K DAE+A+ M G
Sbjct: 110 VGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 169
Query: 78 RMLDGRELRVQMARYGRPPS 97
+ L GR++R A +PP+
Sbjct: 170 QWLGGRQIRTNWATR-KPPA 188
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
+L V NL+ T + ++F + G + + D T + + FV F + R A AL A
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 75 MDGRMLDGRELRVQMARYGRPPSSSR 100
M+GR + G+E++V A PSS +
Sbjct: 66 MNGRKIMGKEVKVNWA---TTPSSQK 88
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73
+S+ V NL+Y T DDL +VF G V + +P DR T RGF FV + A+
Sbjct: 1 MSIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQ 60
Query: 74 AMDGRMLDGRELRVQMARYGRPPSSSRSRGG 104
A+DG GR L+V AR R +RS GG
Sbjct: 61 ALDGAEWMGRVLKVNKAR-PREEKGARSGGG 90
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MS G P + ++ V NL + T +DL R+F + G+V + I +D+ +R+S+G +FV
Sbjct: 1 MSGGLAPSK----STVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFV 56
Query: 61 RFFDKRDAEDALDAMDGRMLDGRELRVQMAR-YGRPPSSSRSRGGRDRDR 109
F DK A++ + ++ + L GR ++ +A+ GR R R D+ R
Sbjct: 57 LFLDKESAQNCVRGLNNKQLFGRAIKASIAKDNGRATEFIRRRNYTDKSR 106
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MS G P + ++ V NL + T +DL R+F + G+V + I +D+ TR+S+G AF+
Sbjct: 1 MSGGLAPSK----STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFI 56
Query: 61 RFFDKRDAEDALDAMDGRMLDGRELRVQMA 90
F DK A++ A++ + L GR ++ +A
Sbjct: 57 LFLDKDSAQNCTRAINNKQLFGRVIKASIA 86
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
L + L T L VF + G V ++ + +DR T +SRGFAFV F DA+DA +
Sbjct: 10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 76 DGRMLDGRELRVQMARYGR--------PPSSSRSRG 103
+G+ LDG+ ++V+ A PP+S RSRG
Sbjct: 70 NGKALDGKPIKVEQATKPSFSTPSRRGPPTSPRSRG 105
>sp|Q7QCB6|NCBP2_ANOGA Nuclear cap-binding protein subunit 2 OS=Anopheles gambiae GN=Cbp20
PE=3 SV=3
Length = 163
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 12/104 (11%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
+L V NL++ TT + + +F RCG+V I + D+F + GF FV ++ + DAE A+
Sbjct: 39 TLYVGNLSFYTTEEQIHELFSRCGDVRRIIMGLDKFKKTPCGFCFVEYYSRLDAESAMRY 98
Query: 75 MDGRMLDGRELRVQMA-------RYGRPPSSSRSRGGRDRDRRR 111
++G LD R +RV +YGR + GG+ RD R
Sbjct: 99 INGTRLDDRIVRVDWDAGFIEGRQYGRGKT-----GGQVRDEYR 137
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MS G P + ++ V NL + T +DL R+F + G+V + I +D+ TR S+G AF+
Sbjct: 1 MSGGLAPSK----STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFI 56
Query: 61 RFFDKRDAEDALDAMDGRMLDGRELRVQMA 90
F DK A++ A++ + L GR ++ +A
Sbjct: 57 LFLDKDSAQNCTRAINNKQLFGRVIKASIA 86
>sp|Q8JGR6|NCBP2_DANRE Nuclear cap-binding protein subunit 2 OS=Danio rerio GN=ncbp2 PE=2
SV=2
Length = 155
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 12/104 (11%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
+L V NL++ TT + + +F +CG+V I I D+ + + GF FV ++ + DAE+A+
Sbjct: 40 TLYVGNLSFYTTEEQVHELFAKCGDVKRIIIGLDKIKKTACGFCFVEYYTRADAENAMRF 99
Query: 75 MDGRMLDGRELRVQMA-------RYGRPPSSSRSRGGRDRDRRR 111
++G LD R +R +YGR S GG+ RD R
Sbjct: 100 VNGTRLDDRIIRTDWDAGFKEGRQYGRGKS-----GGQVRDEYR 138
>sp|B7P877|NCBP2_IXOSC Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis GN=Cbp20
PE=3 SV=1
Length = 152
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 12/104 (11%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
+L V N+++ TT + + +F +CG+V + + DRF + GF FV ++ + DAE+A+
Sbjct: 29 TLYVGNMSFYTTEEQIYELFSKCGDVKKVIMGLDRFHKTPCGFCFVEYYTREDAENAIRY 88
Query: 75 MDGRMLDGRELR-------VQMARYGRPPSSSRSRGGRDRDRRR 111
++G LD R +R V+ ++GR S GG+ RD R
Sbjct: 89 VNGTKLDDRIIRTDWDAGFVEGRQFGRGKS-----GGQVRDEYR 127
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10
PE=2 SV=1
Length = 169
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
V L + T +L R F + GEV D I DR T SRGF FV F D++ +DA+D M+G
Sbjct: 10 VGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNG 69
Query: 78 RMLDGRELRVQMAR 91
+ LDGR + V A+
Sbjct: 70 KELDGRTITVNEAQ 83
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
L + L T L VF + G + +I + +DR T +SRGFAFV F DA+DA M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 76 DGRMLDGRELRVQMA 90
+G+ LDG+ ++V+ A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
S+ V N+ Y T ++L F CG V + I D+FT +GFA++ F DK +L A
Sbjct: 164 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSL-A 222
Query: 75 MDGRMLDGRELRVQMARYGRPPSSSRSRG 103
+D + GR+++V R RP S+ RG
Sbjct: 223 LDESLFRGRQIKVVPKRTNRPGISTTDRG 251
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
L + L T L VF + G + ++ + +DR T +SRGFAFV F DA+DA M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 76 DGRMLDGRELRVQMA 90
+G+ LDG+ ++V+ A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|Q9XFD1|NCBP2_ARATH Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana
GN=CBP20 PE=1 SV=1
Length = 257
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73
++ + N+++ TT + L +F R GE+ I + D+ T+ GF FV F+ + D EDA+
Sbjct: 34 TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVK 93
Query: 74 AMDGRMLDGRELRVQM---ARYGRPPSSSRSRGGRDRDRRR 111
+ G +LD R +RV + GR RS GG+ RD R
Sbjct: 94 YISGTILDDRPIRVDFDWGFQEGRQWGRGRS-GGQVRDEYR 133
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
S+ V N+ Y T ++L F CG V + I D+FT +GFA++ F DK +L A
Sbjct: 163 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSL-A 221
Query: 75 MDGRMLDGRELRVQMARYGRPPSSSRSRG 103
+D + GR+++V R RP S+ RG
Sbjct: 222 LDESLFRGRQIKVVPKRTNRPGISTTDRG 250
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MS G P + ++ V NL + T +DL R+F + G+V + I +D+ TR+S+G AF+
Sbjct: 1 MSGGLAPSK----STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFI 56
Query: 61 RFFDKRDAEDALDAMDGRMLDGRELRVQMA 90
F DK A + A++ + L GR ++ +A
Sbjct: 57 LFLDKDSALNCTRAINNKQLFGRVIKASIA 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,759,127
Number of Sequences: 539616
Number of extensions: 2347331
Number of successful extensions: 21878
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 428
Number of HSP's that attempted gapping in prelim test: 8680
Number of HSP's gapped (non-prelim): 7004
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)