Query psy7051
Match_columns 158
No_of_seqs 238 out of 2416
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 16:54:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnm_A SRP46 splicing factor; 99.9 1.9E-25 6.6E-30 143.4 12.5 96 2-97 2-97 (103)
2 3pgw_S U1-70K; protein-RNA com 99.9 1.6E-24 5.5E-29 170.8 17.5 83 10-92 99-181 (437)
3 4fxv_A ELAV-like protein 1; RN 99.9 6.9E-25 2.4E-29 140.1 11.3 80 13-92 19-98 (99)
4 3ex7_B RNA-binding protein 8A; 99.9 1.6E-24 5.5E-29 143.9 12.0 90 7-96 16-105 (126)
5 2dgs_A DAZ-associated protein 99.9 1.5E-23 5.1E-28 133.7 13.7 90 5-95 2-91 (99)
6 1x5u_A Splicing factor 3B subu 99.9 1.8E-23 6.1E-28 134.6 12.9 90 5-94 7-96 (105)
7 2cq0_A Eukaryotic translation 99.9 1.2E-23 4.1E-28 135.0 11.9 91 5-95 7-97 (103)
8 3s8s_A Histone-lysine N-methyl 99.9 9.8E-24 3.3E-28 137.2 11.4 80 13-92 6-85 (110)
9 2lea_A Serine/arginine-rich sp 99.9 2.4E-24 8.2E-29 144.9 8.6 97 1-97 35-131 (135)
10 2lkz_A RNA-binding protein 5; 99.9 3.6E-24 1.2E-28 135.7 8.5 85 8-92 4-94 (95)
11 2dnz_A Probable RNA-binding pr 99.9 3.5E-23 1.2E-27 130.9 13.0 83 12-94 4-86 (95)
12 1x5s_A Cold-inducible RNA-bind 99.9 3.5E-23 1.2E-27 132.6 13.2 86 9-94 8-93 (102)
13 2la6_A RNA-binding protein FUS 99.9 2.3E-23 7.9E-28 132.8 11.9 90 2-91 2-99 (99)
14 1u6f_A Tcubp1, RNA-binding pro 99.9 4.9E-23 1.7E-27 138.9 14.1 87 10-96 39-125 (139)
15 1whw_A Hypothetical protein ri 99.9 6E-23 2E-27 130.8 13.5 86 10-95 5-90 (99)
16 1p27_B RNA-binding protein 8A; 99.9 3E-23 1E-27 133.8 12.2 90 5-94 15-104 (106)
17 1h2v_Z 20 kDa nuclear CAP bind 99.9 3.1E-23 1.1E-27 142.5 12.8 85 10-94 36-120 (156)
18 2dgp_A Bruno-like 4, RNA bindi 99.9 4E-23 1.4E-27 133.1 12.6 89 6-94 6-97 (106)
19 2cph_A RNA binding motif prote 99.9 5.5E-23 1.9E-27 132.7 13.2 91 6-96 8-100 (107)
20 2dgo_A Cytotoxic granule-assoc 99.9 1.4E-22 4.8E-27 132.4 15.2 89 7-95 9-97 (115)
21 2cpz_A CUG triplet repeat RNA- 99.9 3.4E-23 1.2E-27 135.4 12.2 87 9-95 21-107 (115)
22 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2.3E-23 7.8E-28 133.4 11.0 88 9-96 8-95 (102)
23 1x4h_A RNA-binding protein 28; 99.9 7.4E-23 2.5E-27 132.9 13.3 88 7-94 9-102 (111)
24 1x5t_A Splicing factor 3B subu 99.9 2.8E-23 9.5E-28 131.6 10.7 85 11-95 3-88 (96)
25 2fy1_A RNA-binding motif prote 99.9 7E-23 2.4E-27 134.3 12.8 82 11-93 5-86 (116)
26 2e5h_A Zinc finger CCHC-type a 99.9 4.9E-23 1.7E-27 129.9 11.5 86 6-91 9-94 (94)
27 2cqc_A Arginine/serine-rich sp 99.9 4.9E-23 1.7E-27 130.1 11.1 86 7-92 9-94 (95)
28 1oo0_B CG8781-PA, drosophila Y 99.9 6.8E-23 2.3E-27 133.0 11.9 89 6-94 19-107 (110)
29 1wi8_A EIF-4B, eukaryotic tran 99.9 8.7E-23 3E-27 131.2 12.2 87 7-95 9-96 (104)
30 3mdf_A Peptidyl-prolyl CIS-tra 99.9 6.1E-23 2.1E-27 127.1 10.5 81 11-91 5-85 (85)
31 2d9p_A Polyadenylate-binding p 99.9 1.4E-22 4.8E-27 130.0 12.4 85 10-96 12-96 (103)
32 2cqd_A RNA-binding region cont 99.9 2.7E-22 9.3E-27 131.3 13.9 86 7-93 11-96 (116)
33 2dng_A Eukaryotic translation 99.9 1.7E-22 5.9E-27 129.6 12.6 84 9-94 11-94 (103)
34 2ywk_A Putative RNA-binding pr 99.9 7.6E-23 2.6E-27 129.3 10.7 86 6-92 9-94 (95)
35 2dnh_A Bruno-like 5, RNA bindi 99.9 2.3E-22 8E-27 129.3 13.2 86 10-96 12-100 (105)
36 3beg_B Splicing factor, argini 99.9 4.8E-23 1.7E-27 134.9 9.9 74 11-91 14-92 (115)
37 1x4c_A Splicing factor, argini 99.9 2.9E-22 1E-26 129.7 13.4 75 11-92 13-92 (108)
38 2lxi_A RNA-binding protein 10; 99.9 2.3E-23 7.7E-28 131.1 7.8 80 14-93 2-83 (91)
39 2cpe_A RNA-binding protein EWS 99.9 1.3E-22 4.4E-27 132.2 11.7 86 9-94 11-104 (113)
40 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.3E-22 4.5E-27 126.2 11.1 81 12-92 5-85 (87)
41 2kxn_B Transformer-2 protein h 99.9 5.9E-23 2E-27 137.1 10.1 88 7-94 40-127 (129)
42 2do4_A Squamous cell carcinoma 99.9 2.5E-22 8.5E-27 128.2 12.6 83 10-93 14-96 (100)
43 3ulh_A THO complex subunit 4; 99.9 1.4E-22 4.7E-27 130.8 11.5 84 7-91 23-106 (107)
44 1rk8_A CG8781-PA, CG8781-PA pr 99.9 1.2E-22 4.2E-27 140.9 12.0 89 7-95 66-154 (165)
45 1x4a_A Splicing factor, argini 99.9 3.1E-22 1.1E-26 129.6 13.1 85 9-96 18-102 (109)
46 3md1_A Nuclear and cytoplasmic 99.9 1.9E-22 6.5E-27 124.4 11.3 79 14-92 2-80 (83)
47 2cpf_A RNA binding motif prote 99.9 1E-22 3.6E-27 129.4 10.3 84 12-95 4-90 (98)
48 2cqi_A Nucleolysin TIAR; RNA r 99.9 5.5E-22 1.9E-26 127.2 13.7 87 7-95 9-95 (103)
49 2div_A TRNA selenocysteine ass 99.9 1.2E-22 4.1E-27 129.4 10.2 84 11-94 7-95 (99)
50 2x1f_A MRNA 3'-END-processing 99.9 2.1E-22 7.1E-27 127.7 11.2 81 13-93 2-82 (96)
51 2cq3_A RNA-binding protein 9; 99.9 7.3E-22 2.5E-26 126.6 13.8 87 7-95 9-95 (103)
52 3p5t_L Cleavage and polyadenyl 99.9 2.4E-23 8.3E-28 130.6 6.5 82 14-95 2-85 (90)
53 2dhg_A TRNA selenocysteine ass 99.9 2.7E-22 9.4E-27 128.8 11.5 85 9-94 5-91 (104)
54 2khc_A Testis-specific RNP-typ 99.9 1.7E-22 5.7E-27 132.7 10.4 82 10-91 37-118 (118)
55 2jrs_A RNA-binding protein 39; 99.9 2.2E-22 7.5E-27 130.4 10.7 86 7-92 20-105 (108)
56 2dgv_A HnRNP M, heterogeneous 99.9 3.7E-22 1.3E-26 125.4 11.3 84 10-95 5-88 (92)
57 2do0_A HnRNP M, heterogeneous 99.9 1.6E-21 5.5E-26 127.1 14.8 87 7-94 9-95 (114)
58 4a8x_A RNA-binding protein wit 99.9 2.1E-22 7.3E-27 125.4 10.0 83 12-94 3-86 (88)
59 2dh8_A DAZ-associated protein 99.9 1.9E-22 6.5E-27 129.8 9.9 88 6-94 9-96 (105)
60 3s7r_A Heterogeneous nuclear r 99.9 4.3E-22 1.5E-26 123.9 10.8 84 6-90 4-87 (87)
61 2dgx_A KIAA0430 protein; RRM d 99.9 8E-22 2.7E-26 125.1 12.0 81 11-94 7-91 (96)
62 4f25_A Polyadenylate-binding p 99.9 3.2E-22 1.1E-26 131.0 10.4 79 13-93 5-83 (115)
63 3ucg_A Polyadenylate-binding p 99.9 5E-22 1.7E-26 124.0 10.5 80 13-93 6-85 (89)
64 2jvr_A Nucleolar protein 3; RN 99.9 2.8E-22 9.7E-27 130.3 9.2 84 3-93 21-105 (111)
65 2kn4_A Immunoglobulin G-bindin 99.9 1.1E-21 3.9E-26 134.8 12.8 86 11-96 68-153 (158)
66 2dgt_A RNA-binding protein 30; 99.9 1.7E-21 6E-26 122.4 12.6 83 5-95 2-84 (92)
67 2cqp_A RNA-binding protein 12; 99.9 3E-22 1E-26 127.3 8.7 83 10-92 12-94 (98)
68 2cqg_A TDP-43, TAR DNA-binding 99.9 2.1E-21 7E-26 124.5 12.7 86 7-94 9-94 (103)
69 3ns6_A Eukaryotic translation 99.9 1.8E-22 6E-27 129.1 7.6 80 13-92 6-92 (100)
70 2m2b_A RNA-binding protein 10; 99.9 3.3E-22 1.1E-26 133.7 8.8 88 6-94 16-109 (131)
71 1wez_A HnRNP H', FTP-3, hetero 99.9 9.3E-22 3.2E-26 126.2 10.6 82 9-93 11-92 (102)
72 3n9u_C Cleavage and polyadenyl 99.9 7.3E-22 2.5E-26 135.8 10.7 79 13-91 55-135 (156)
73 2ek1_A RNA-binding protein 12; 99.9 1.9E-22 6.6E-27 127.4 7.2 81 12-92 14-94 (95)
74 2dgw_A Probable RNA-binding pr 99.9 1.9E-21 6.4E-26 122.0 11.6 85 6-93 3-87 (91)
75 2dnq_A RNA-binding protein 4B; 99.9 2.8E-21 9.5E-26 121.0 12.2 77 11-95 6-82 (90)
76 1x4b_A Heterogeneous nuclear r 99.9 4E-22 1.4E-26 130.5 8.7 81 13-94 27-107 (116)
77 3r27_A HnRNP L, heterogeneous 99.9 1.1E-21 3.7E-26 124.8 10.4 80 7-92 15-96 (100)
78 1p1t_A Cleavage stimulation fa 99.9 1.7E-22 5.9E-27 129.7 6.8 84 10-93 5-88 (104)
79 2fc8_A NCL protein; structure 99.9 1.2E-21 4.1E-26 125.3 10.7 87 5-94 7-93 (102)
80 2kt5_A RNA and export factor-b 99.9 2.5E-21 8.4E-26 128.2 12.5 85 9-94 31-115 (124)
81 2jwn_A Embryonic polyadenylate 99.9 1E-21 3.4E-26 130.0 10.6 82 13-95 36-117 (124)
82 2dgu_A Heterogeneous nuclear r 99.9 6E-21 2.1E-25 122.4 14.0 79 9-95 7-85 (103)
83 2cpi_A CCR4-NOT transcription 99.9 9.6E-22 3.3E-26 127.9 10.1 87 7-93 9-101 (111)
84 1s79_A Lupus LA protein; RRM, 99.9 7.8E-22 2.7E-26 126.7 9.2 79 11-91 9-87 (103)
85 2cq4_A RNA binding motif prote 99.9 4.8E-22 1.6E-26 129.8 8.2 78 14-92 26-103 (114)
86 1x4e_A RNA binding motif, sing 99.9 1.5E-22 5.3E-27 125.4 5.6 81 11-91 3-83 (85)
87 2fc9_A NCL protein; structure 99.9 2.9E-21 9.7E-26 123.4 11.5 82 9-94 11-92 (101)
88 2nlw_A Eukaryotic translation 99.9 1.5E-21 5E-26 125.8 10.1 85 5-91 7-98 (105)
89 2cpx_A Hypothetical protein FL 99.9 5.6E-22 1.9E-26 129.5 8.1 86 11-96 23-108 (115)
90 2rs2_A Musashi-1, RNA-binding 99.9 2.1E-21 7.1E-26 125.9 10.6 84 10-94 22-105 (109)
91 1wg5_A Heterogeneous nuclear r 99.9 5.6E-21 1.9E-25 122.8 12.3 82 9-92 11-93 (104)
92 1x4d_A Matrin 3; structural ge 99.9 1.2E-21 4.2E-26 125.4 9.1 78 10-93 12-92 (102)
93 2j76_E EIF-4B, EIF4B, eukaryot 99.9 4.8E-22 1.6E-26 127.0 7.2 82 9-92 15-97 (100)
94 2mss_A Protein (musashi1); RNA 99.9 6E-22 2.1E-26 119.9 7.2 75 15-90 1-75 (75)
95 2dis_A Unnamed protein product 99.9 7.2E-21 2.5E-25 123.1 12.7 84 11-94 6-93 (109)
96 2dnn_A RNA-binding protein 12; 99.9 1.5E-21 5E-26 126.6 9.3 86 3-91 6-91 (109)
97 1sjq_A Polypyrimidine tract-bi 99.9 1.8E-21 6.2E-26 124.9 9.5 76 12-93 15-92 (105)
98 1why_A Hypothetical protein ri 99.9 5.7E-21 2E-25 121.2 11.7 77 11-93 15-93 (97)
99 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 3.8E-21 1.3E-25 129.5 11.3 81 10-90 60-140 (140)
100 2err_A Ataxin-2-binding protei 99.9 2.9E-21 9.8E-26 125.3 9.9 84 7-92 23-106 (109)
101 1wex_A Hypothetical protein (r 99.9 8.4E-21 2.9E-25 122.1 11.9 79 9-93 11-91 (104)
102 2cpj_A Non-POU domain-containi 99.9 8.1E-21 2.8E-25 120.9 11.6 80 9-94 11-90 (99)
103 2ytc_A PRE-mRNA-splicing facto 99.9 4.7E-21 1.6E-25 118.6 10.3 80 6-91 5-85 (85)
104 2cq1_A PTB-like protein L; RRM 99.9 1.2E-20 4.2E-25 120.7 12.3 80 9-94 11-92 (101)
105 2ad9_A Polypyrimidine tract-bi 99.9 5.8E-21 2E-25 125.3 10.8 80 9-94 27-108 (119)
106 1wel_A RNA-binding protein 12; 99.9 8.5E-22 2.9E-26 130.5 6.7 80 11-91 23-102 (124)
107 2dnp_A RNA-binding protein 14; 99.9 1.3E-20 4.3E-25 118.0 11.7 77 10-94 6-82 (90)
108 2a3j_A U1 small nuclear ribonu 99.9 8.2E-21 2.8E-25 126.3 11.3 83 7-92 23-109 (127)
109 3q2s_C Cleavage and polyadenyl 99.9 2.4E-21 8.3E-26 140.9 9.6 80 12-91 67-148 (229)
110 1wf1_A RNA-binding protein RAL 99.9 8.2E-21 2.8E-25 123.2 11.1 76 12-95 26-102 (110)
111 1uaw_A Mouse-musashi-1; RNP-ty 99.9 1.3E-21 4.6E-26 118.9 6.7 76 14-90 1-76 (77)
112 1x4g_A Nucleolysin TIAR; struc 99.9 1.4E-20 4.8E-25 121.9 11.9 78 11-94 23-100 (109)
113 2ki2_A SS-DNA binding protein 99.9 8.8E-22 3E-26 123.2 5.9 80 14-94 2-81 (90)
114 2kvi_A Nuclear polyadenylated 99.8 5.6E-21 1.9E-25 121.1 9.7 79 9-95 6-85 (96)
115 1x5o_A RNA binding motif, sing 99.8 1.1E-20 3.8E-25 123.2 11.4 81 10-91 22-110 (114)
116 2cpd_A Apobec-1 stimulating pr 99.8 2.8E-20 9.6E-25 118.4 12.8 77 10-94 12-90 (99)
117 2cpy_A RNA-binding protein 12; 99.8 3.1E-21 1.1E-25 126.0 8.4 81 10-92 12-93 (114)
118 2db1_A Heterogeneous nuclear r 99.8 3.7E-21 1.3E-25 126.5 8.7 79 11-91 15-96 (118)
119 2e5j_A Methenyltetrahydrofolat 99.8 8.3E-21 2.8E-25 120.5 10.1 79 10-93 16-94 (97)
120 2wbr_A GW182, gawky, LD47780P; 99.8 7.2E-21 2.5E-25 117.5 9.4 73 13-91 7-79 (89)
121 2f3j_A RNA and export factor b 99.8 8.9E-21 3E-25 132.9 10.8 82 10-92 85-166 (177)
122 2hvz_A Splicing factor, argini 99.8 7.7E-21 2.6E-25 121.4 9.5 76 14-94 1-76 (101)
123 1nu4_A U1A RNA binding domain; 99.8 4.3E-21 1.5E-25 121.6 7.8 83 8-93 3-89 (97)
124 2hgl_A HNRPF protein, heteroge 99.8 5E-21 1.7E-25 128.7 8.3 79 11-91 42-123 (136)
125 2lcw_A RNA-binding protein FUS 99.7 1.1E-22 3.7E-27 133.3 0.0 85 10-94 4-96 (116)
126 2jvo_A Nucleolar protein 3; nu 99.8 1.1E-20 3.8E-25 122.3 9.4 77 10-94 28-104 (108)
127 2cqh_A IGF-II mRNA-binding pro 99.8 1.2E-20 4E-25 118.8 9.0 76 11-93 6-83 (93)
128 4f02_A Polyadenylate-binding p 99.8 1.9E-20 6.4E-25 134.6 11.1 86 7-92 9-94 (213)
129 1fj7_A Nucleolin RBD1, protein 99.8 1.9E-21 6.6E-26 124.2 5.1 81 11-93 15-95 (101)
130 2xnq_A Nuclear polyadenylated 99.8 4.4E-20 1.5E-24 117.2 11.2 75 10-92 19-94 (97)
131 1iqt_A AUF1, heterogeneous nuc 99.8 3.7E-21 1.3E-25 116.3 5.9 75 15-90 1-75 (75)
132 2lmi_A GRSF-1, G-rich sequence 99.8 6.7E-21 2.3E-25 123.1 6.7 80 10-91 8-90 (107)
133 3lqv_A PRE-mRNA branch site pr 99.8 5.5E-20 1.9E-24 120.1 11.1 78 12-92 7-84 (115)
134 2krb_A Eukaryotic translation 99.8 9.2E-21 3.2E-25 116.4 6.8 72 14-87 2-80 (81)
135 1whx_A Hypothetical protein ri 99.8 2.1E-20 7.2E-25 121.6 8.8 75 12-92 9-83 (111)
136 1x4f_A Matrin 3; structural ge 99.8 1.9E-20 6.7E-25 121.6 8.1 79 10-94 22-103 (112)
137 2xs2_A Deleted in azoospermia- 99.8 1.5E-20 5.3E-25 120.2 7.6 84 7-93 3-86 (102)
138 2e5g_A U6 snRNA-specific termi 99.8 7.8E-20 2.7E-24 115.3 10.5 78 10-93 5-82 (94)
139 2hgm_A HNRPF protein, heteroge 99.8 2.8E-20 9.5E-25 123.4 8.8 80 9-91 38-119 (126)
140 2hgn_A Heterogeneous nuclear r 99.8 4.2E-21 1.4E-25 129.4 4.8 80 11-93 44-123 (139)
141 1sjr_A Polypyrimidine tract-bi 99.8 7.4E-20 2.5E-24 125.9 11.1 81 9-93 42-124 (164)
142 1x5p_A Negative elongation fac 99.8 2.4E-19 8.1E-24 113.7 12.4 78 10-95 12-89 (97)
143 1fjc_A Nucleolin RBD2, protein 99.8 2.5E-20 8.6E-25 117.9 7.7 78 10-92 13-90 (96)
144 3md3_A Nuclear and cytoplasmic 99.8 1.7E-19 5.7E-24 123.9 12.3 83 9-91 83-165 (166)
145 2i2y_A Fusion protein consists 99.8 9.4E-20 3.2E-24 124.3 10.9 80 9-93 69-148 (150)
146 2la4_A Nuclear and cytoplasmic 99.8 3.9E-20 1.3E-24 118.1 8.4 74 13-92 27-100 (101)
147 2e44_A Insulin-like growth fac 99.8 9.5E-20 3.3E-24 115.2 10.1 79 11-93 13-92 (96)
148 3egn_A RNA-binding protein 40; 99.8 9.5E-21 3.3E-25 128.3 5.2 87 10-96 42-133 (143)
149 2j8a_A Histone-lysine N-methyl 99.8 6.2E-20 2.1E-24 120.6 8.5 80 14-93 3-96 (136)
150 2cq2_A Hypothetical protein LO 99.8 1.2E-19 4E-24 118.1 9.7 77 10-92 22-105 (114)
151 1l3k_A Heterogeneous nuclear r 99.8 1.3E-19 4.4E-24 127.9 10.8 92 1-93 1-92 (196)
152 2g4b_A Splicing factor U2AF 65 99.8 1.6E-19 5.5E-24 124.9 10.6 80 11-90 92-171 (172)
153 2qfj_A FBP-interacting repress 99.8 3.3E-19 1.1E-23 127.6 12.4 84 12-95 124-207 (216)
154 2dha_A FLJ20171 protein; RRM d 99.8 4.4E-20 1.5E-24 122.1 6.8 79 11-91 21-103 (123)
155 1fxl_A Paraneoplastic encephal 99.8 4.3E-19 1.5E-23 121.9 11.5 80 13-92 2-81 (167)
156 1b7f_A Protein (SXL-lethal pro 99.8 3.8E-19 1.3E-23 122.5 11.2 87 4-90 80-168 (168)
157 2diu_A KIAA0430 protein; struc 99.8 3.5E-19 1.2E-23 111.0 9.7 74 11-94 6-85 (96)
158 1b7f_A Protein (SXL-lethal pro 99.8 4.3E-19 1.5E-23 122.2 11.0 82 12-93 2-83 (168)
159 2yh0_A Splicing factor U2AF 65 99.8 6E-19 2E-23 124.6 11.9 83 11-93 112-194 (198)
160 3zzy_A Polypyrimidine tract-bi 99.8 5.1E-19 1.7E-23 117.5 10.2 77 12-93 27-106 (130)
161 1fxl_A Paraneoplastic encephal 99.8 5E-19 1.7E-23 121.6 10.5 87 4-90 79-167 (167)
162 1l3k_A Heterogeneous nuclear r 99.8 4.6E-19 1.6E-23 125.0 10.5 82 12-94 103-184 (196)
163 1wg1_A KIAA1579 protein, homol 99.8 2.7E-19 9.3E-24 111.5 8.0 75 12-93 4-78 (88)
164 2e5i_A Heterogeneous nuclear r 99.8 1.3E-18 4.3E-23 115.0 11.5 74 14-93 26-102 (124)
165 3tyt_A Heterogeneous nuclear r 99.8 1E-18 3.5E-23 125.0 10.2 77 12-93 3-80 (205)
166 4f02_A Polyadenylate-binding p 99.8 1.1E-18 3.7E-23 125.4 10.2 78 13-92 103-180 (213)
167 2dnl_A Cytoplasmic polyadenyla 99.8 1.1E-18 3.8E-23 113.8 9.0 76 11-89 6-84 (114)
168 2bz2_A Negative elongation fac 99.8 1.4E-18 4.9E-23 114.5 9.6 76 11-94 37-112 (121)
169 2qfj_A FBP-interacting repress 99.8 1.6E-18 5.5E-23 124.0 10.5 79 13-91 28-106 (216)
170 2cjk_A Nuclear polyadenylated 99.8 8E-19 2.7E-23 120.8 8.4 80 12-92 86-165 (167)
171 2hzc_A Splicing factor U2AF 65 99.8 1.9E-18 6.5E-23 107.1 9.2 70 12-88 5-85 (87)
172 3md3_A Nuclear and cytoplasmic 99.8 2.9E-18 9.9E-23 117.6 10.9 79 14-93 1-79 (166)
173 3d2w_A TAR DNA-binding protein 99.8 2.3E-18 7.9E-23 107.6 9.2 73 11-92 9-83 (89)
174 1wf0_A TDP-43, TAR DNA-binding 99.8 8.3E-19 2.8E-23 109.2 6.9 76 12-94 4-79 (88)
175 3nmr_A Cugbp ELAV-like family 99.8 4.7E-18 1.6E-22 117.6 10.9 79 12-91 94-175 (175)
176 2pe8_A Splicing factor 45; RRM 99.8 8E-18 2.7E-22 108.2 10.9 80 12-91 7-92 (105)
177 2adc_A Polypyrimidine tract-bi 99.8 3.1E-18 1.1E-22 124.2 9.7 84 5-93 26-110 (229)
178 3nmr_A Cugbp ELAV-like family 99.7 9.9E-18 3.4E-22 116.0 10.6 82 12-93 2-88 (175)
179 3pgw_A U1-A; protein-RNA compl 99.7 1.2E-17 4.2E-22 124.2 11.5 83 8-93 4-90 (282)
180 3u1l_A PRE-mRNA-splicing facto 99.7 6.3E-18 2.1E-22 123.1 9.0 79 10-94 131-230 (240)
181 1fje_B Nucleolin RBD12, protei 99.7 1.6E-17 5.5E-22 115.3 10.2 77 10-91 96-172 (175)
182 2cjk_A Nuclear polyadenylated 99.7 9.7E-18 3.3E-22 115.4 8.3 78 12-91 2-79 (167)
183 3pgw_A U1-A; protein-RNA compl 99.7 3E-17 1E-21 122.1 11.5 76 11-91 205-281 (282)
184 2voo_A Lupus LA protein; RNA-b 99.7 2E-17 6.9E-22 117.3 9.9 77 13-91 109-185 (193)
185 2ghp_A U4/U6 snRNA-associated 99.7 4E-17 1.4E-21 122.0 10.1 81 11-92 208-290 (292)
186 3smz_A Protein raver-1, ribonu 99.7 9E-17 3.1E-21 119.7 11.4 82 12-93 94-175 (284)
187 3smz_A Protein raver-1, ribonu 99.7 6.7E-17 2.3E-21 120.4 10.7 83 10-93 181-264 (284)
188 3tyt_A Heterogeneous nuclear r 99.7 5.2E-17 1.8E-21 116.1 8.8 78 11-90 121-204 (205)
189 3sde_A Paraspeckle component 1 99.7 1E-16 3.4E-21 118.4 10.1 75 11-91 20-94 (261)
190 1qm9_A Polypyrimidine tract-bi 99.7 4.7E-17 1.6E-21 115.2 8.0 76 13-93 3-79 (198)
191 2dit_A HIV TAT specific factor 99.7 3.9E-16 1.3E-20 101.4 11.5 80 9-92 11-101 (112)
192 1qm9_A Polypyrimidine tract-bi 99.7 1.5E-16 5.1E-21 112.6 10.0 77 11-92 118-196 (198)
193 2adc_A Polypyrimidine tract-bi 99.7 1.9E-16 6.5E-21 114.8 10.7 77 11-92 149-227 (229)
194 1fje_B Nucleolin RBD12, protei 99.7 2.8E-17 9.7E-22 114.0 5.2 83 9-93 9-91 (175)
195 3v4m_A Splicing factor U2AF 65 99.7 2.3E-16 8E-21 101.4 9.0 80 12-91 4-95 (105)
196 1jmt_A Splicing factor U2AF 35 99.7 5.1E-17 1.7E-21 104.3 4.2 72 18-90 20-103 (104)
197 3sde_A Paraspeckle component 1 99.7 4.2E-16 1.4E-20 115.1 9.1 80 13-93 96-179 (261)
198 2ghp_A U4/U6 snRNA-associated 99.6 5E-16 1.7E-20 116.1 9.3 81 12-93 116-197 (292)
199 2g4b_A Splicing factor U2AF 65 99.6 1E-15 3.4E-20 105.7 10.1 75 12-93 3-88 (172)
200 3ue2_A Poly(U)-binding-splicin 99.6 6.5E-16 2.2E-20 101.2 8.5 80 12-91 19-107 (118)
201 2d9o_A DNAJ (HSP40) homolog, s 99.6 6E-15 2.1E-19 93.8 12.4 75 13-94 10-91 (100)
202 2yh0_A Splicing factor U2AF 65 99.6 2E-15 6.9E-20 106.4 10.0 74 13-93 4-88 (198)
203 3tht_A Alkylated DNA repair pr 99.6 2E-15 6.8E-20 115.3 9.1 75 10-90 15-96 (345)
204 3s6e_A RNA-binding protein 39; 99.5 4.5E-14 1.5E-18 91.9 9.7 76 12-91 6-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.5 2.4E-13 8.2E-18 88.9 9.6 76 10-91 15-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.4 1.3E-12 4.3E-17 80.7 8.8 71 14-93 8-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.3 1.3E-11 4.4E-16 76.6 6.7 70 13-91 15-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.2 3.7E-11 1.2E-15 86.5 8.9 67 25-91 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 99.0 6.4E-09 2.2E-13 65.8 8.9 72 12-89 20-96 (117)
210 1uw4_A UPF3X; nonsense mediate 98.5 1.8E-06 6.1E-11 53.4 9.4 80 14-93 2-88 (91)
211 1wey_A Calcipressin 1; structu 98.5 4.7E-07 1.6E-11 57.0 6.5 74 12-91 4-82 (104)
212 1whv_A Poly(A)-specific ribonu 98.3 2.8E-06 9.6E-11 52.7 7.4 55 13-76 16-70 (100)
213 2dhx_A Poly (ADP-ribose) polym 98.3 1.2E-05 4E-10 50.5 9.0 70 12-90 7-81 (104)
214 3ctr_A Poly(A)-specific ribonu 98.2 3.4E-06 1.2E-10 52.5 6.1 54 14-76 7-60 (101)
215 2l08_A Regulator of nonsense t 98.2 3.9E-06 1.3E-10 52.2 5.5 79 14-92 10-95 (97)
216 1wwh_A Nucleoporin 35, nucleop 98.1 2.8E-05 9.5E-10 50.2 8.0 69 13-89 24-93 (119)
217 3p3d_A Nucleoporin 53; structu 97.5 0.00018 6.3E-09 47.0 5.7 75 14-90 8-96 (132)
218 3pq1_A Poly(A) RNA polymerase; 97.2 0.00025 8.6E-09 56.0 3.6 55 13-73 53-107 (464)
219 2kn4_A Immunoglobulin G-bindin 96.8 0.001 3.6E-08 44.6 3.9 36 42-79 2-37 (158)
220 2i2y_A Fusion protein consists 96.7 0.00069 2.4E-08 45.1 2.3 40 51-91 9-49 (150)
221 3d45_A Poly(A)-specific ribonu 96.4 0.018 6.2E-07 46.1 8.7 56 13-77 440-495 (507)
222 2g0c_A ATP-dependent RNA helic 93.5 0.41 1.4E-05 27.7 6.6 68 15-91 2-75 (76)
223 3lpe_A Putative transcription 85.0 2.6 8.8E-05 25.4 5.3 60 10-78 9-73 (92)
224 4eyt_A Telomerase associated p 84.2 5.1 0.00017 24.2 8.9 58 12-77 11-68 (129)
225 4e8u_A Putative uncharacterize 72.1 20 0.00069 24.3 7.4 56 14-72 13-80 (172)
226 3pgw_S U1-70K; protein-RNA com 71.4 31 0.0011 26.8 9.0 9 65-73 116-124 (437)
227 3fry_A Probable copper-exporti 69.6 12 0.0004 20.6 6.3 54 14-74 7-60 (73)
228 3ts2_A Protein LIN-28 homolog 65.9 0.44 1.5E-05 31.7 -2.3 28 28-63 2-29 (148)
229 3j21_T 50S ribosomal protein L 63.0 21 0.00073 21.2 6.3 57 16-75 25-83 (86)
230 2exu_A Transcription initiatio 62.1 16 0.00055 25.4 5.1 27 54-80 148-174 (200)
231 3u5e_X 60S ribosomal protein L 58.0 36 0.0012 22.2 6.1 57 16-75 81-139 (142)
232 4a17_R RPL23A, 60S ribosomal p 57.8 38 0.0013 22.4 6.1 56 17-75 90-147 (150)
233 3h7h_B Transcription elongatio 56.4 14 0.0005 22.8 3.7 35 39-78 40-74 (106)
234 1q8l_A Copper-transporting ATP 56.3 24 0.00083 19.7 8.0 60 9-74 6-69 (84)
235 3swz_A Steroid 17-alpha-hydrox 55.1 28 0.00097 26.7 6.0 58 16-83 17-78 (494)
236 4a4j_A Pacszia, cation-transpo 52.9 24 0.00083 18.7 5.3 55 14-74 4-61 (69)
237 3iz5_X 60S ribosomal protein L 49.1 39 0.0013 22.4 5.0 55 17-74 92-148 (152)
238 3fut_A Dimethyladenosine trans 48.7 20 0.00069 25.9 4.0 29 14-43 111-139 (271)
239 3lo3_A Uncharacterized conserv 48.0 40 0.0014 20.0 4.7 20 54-73 52-71 (94)
240 3dxs_X Copper-transporting ATP 47.6 32 0.0011 18.5 6.5 55 14-74 4-62 (74)
241 2rf4_B DNA-directed RNA polyme 47.4 18 0.00062 21.5 2.9 29 9-37 15-43 (87)
242 2lfv_A Protein DAMX; cell divi 51.7 4.3 0.00015 25.2 0.0 62 13-79 25-88 (106)
243 3p8b_B Transcription antitermi 44.9 53 0.0018 21.3 5.3 34 40-78 33-66 (152)
244 1x60_A Sporulation-specific N- 44.9 40 0.0014 18.9 5.4 65 11-80 7-71 (79)
245 3uzu_A Ribosomal RNA small sub 44.0 12 0.0004 27.3 2.1 32 14-45 115-146 (279)
246 2i9x_A Putative septation prot 41.1 37 0.0013 20.2 3.6 26 39-64 5-30 (87)
247 4bby_A Alkyldihydroxyacetoneph 40.9 25 0.00084 28.9 3.8 55 21-76 351-409 (658)
248 2cu1_A Mitogen-activated prote 39.4 65 0.0022 19.7 7.5 63 20-91 23-86 (103)
249 1qyr_A KSGA, high level kasuga 37.6 30 0.001 24.6 3.4 28 14-41 91-118 (252)
250 1uta_A FTSN, MSGA, cell divisi 37.3 6.5 0.00022 22.7 -0.2 66 11-82 7-73 (81)
251 2cs4_A Protein C12ORF2; GTP bi 37.2 21 0.00073 21.6 2.1 22 18-39 21-43 (95)
252 2ko4_A Mediator of RNA polymer 37.1 22 0.00075 20.8 2.1 19 18-36 29-48 (81)
253 1i4w_A Mitochondrial replicati 36.8 33 0.0011 25.9 3.6 22 15-36 144-165 (353)
254 3fjv_A Uncharacterized novel p 36.4 65 0.0022 22.2 4.7 57 25-88 65-128 (194)
255 1fme_A FSD-EY peptide; beta-BE 36.4 24 0.00081 15.6 1.7 12 26-37 14-25 (28)
256 4dqz_A Methyltransferase type 35.4 37 0.0013 23.8 3.4 60 14-74 118-181 (230)
257 3ftd_A Dimethyladenosine trans 34.9 28 0.00094 24.7 2.8 26 15-40 97-122 (249)
258 1yg0_A COP associated protein; 34.5 48 0.0016 16.8 5.6 54 15-74 4-60 (66)
259 2g9o_A Copper-transporting ATP 34.4 65 0.0022 18.3 5.2 56 14-75 5-64 (90)
260 1vd2_A Protein kinase C, IOTA 34.2 74 0.0025 18.9 4.8 52 16-74 17-73 (89)
261 2ia9_A Putative septation prot 34.2 54 0.0018 20.0 3.6 26 39-64 5-30 (100)
262 1vq8_S 50S ribosomal protein L 34.1 73 0.0025 18.7 5.4 54 16-72 24-79 (85)
263 3tqs_A Ribosomal RNA small sub 34.0 14 0.00048 26.4 1.2 30 16-45 99-128 (255)
264 1wvf_A 4-cresol dehydrogenase 34.0 37 0.0013 26.9 3.7 43 29-72 217-261 (520)
265 3n9y_A Cholesterol SIDE-chain 33.0 92 0.0032 23.6 5.8 37 28-73 36-72 (487)
266 2i9z_A Putative septation prot 32.9 59 0.002 20.1 3.7 26 39-64 5-30 (105)
267 1xn9_A 30S ribosomal protein S 31.6 90 0.0031 19.0 5.9 47 23-70 28-79 (101)
268 2xmw_A PACS-N, cation-transpor 31.5 58 0.002 16.8 6.4 55 14-74 5-62 (71)
269 2zkr_s 60S ribosomal protein L 31.3 1.2E+02 0.0039 20.2 6.1 56 16-74 95-152 (156)
270 2kt2_A Mercuric reductase; nme 31.2 59 0.002 16.7 5.8 54 15-74 3-59 (69)
271 1kvi_A Copper-transporting ATP 29.9 68 0.0023 17.1 7.4 57 13-75 9-69 (79)
272 2e7g_A Putative ribosome-bindi 29.5 1.1E+02 0.0037 19.3 4.9 36 37-76 43-79 (129)
273 2nn4_A Hypothetical protein YQ 29.4 19 0.00066 20.6 1.0 18 26-43 4-21 (72)
274 2ew9_A Copper-transporting ATP 29.0 1E+02 0.0035 18.9 5.5 56 14-75 82-141 (149)
275 1eij_A Hypothetical protein MT 29.0 43 0.0015 19.6 2.4 20 19-38 50-69 (80)
276 2e5p_A Protein PHF1, PHD finge 29.0 35 0.0012 19.2 1.9 11 55-65 37-47 (68)
277 3mfb_A Uncharacterized protein 28.6 1.1E+02 0.0038 20.3 4.7 37 25-61 3-42 (157)
278 2kpo_A Rossmann 2X2 fold prote 28.5 59 0.002 19.0 3.0 46 25-83 33-79 (110)
279 2xzm_P RPS24E; ribosome, trans 28.2 1.3E+02 0.0044 19.8 6.1 46 23-69 31-81 (149)
280 2l3m_A Copper-ION-binding prot 28.1 68 0.0023 16.5 6.3 55 14-74 7-65 (71)
281 2v94_A RPS24, 30S ribosomal pr 28.1 1.1E+02 0.0037 18.9 6.2 47 23-70 37-88 (107)
282 1aw0_A Menkes copper-transport 28.0 69 0.0023 16.5 4.6 56 14-75 5-64 (72)
283 3ld6_A Lanosterol 14-alpha dem 27.6 1.5E+02 0.005 22.4 6.1 38 27-73 34-71 (461)
284 3e6i_A CYPIIE1, P450-J, cytoch 27.4 1.4E+02 0.0049 22.4 6.0 49 17-74 20-71 (476)
285 3ghf_A Septum site-determining 27.2 1.1E+02 0.0037 19.1 4.4 24 15-38 51-74 (120)
286 1y3j_A Copper-transporting ATP 26.9 78 0.0027 16.8 4.8 56 14-75 5-64 (77)
287 2kyz_A Heavy metal binding pro 26.9 73 0.0025 16.4 3.3 52 15-73 4-55 (67)
288 2m0o_A PHD finger protein 1; t 26.7 39 0.0013 19.6 1.9 20 38-65 45-64 (79)
289 3k9v_A 1,25-dihydroxyvitamin D 26.6 1.5E+02 0.0052 22.3 6.0 39 27-74 51-89 (482)
290 1p6t_A Potential copper-transp 26.6 1.2E+02 0.004 18.7 6.4 55 15-75 77-135 (151)
291 1ik9_C DNA ligase IV; DNA END 25.9 65 0.0022 15.7 2.5 16 22-37 19-34 (37)
292 1o57_A PUR operon repressor; p 25.4 1.8E+02 0.0063 21.1 5.9 42 30-76 47-88 (291)
293 1cpz_A Protein (COPZ); copper 25.4 75 0.0026 16.1 7.5 54 15-74 3-60 (68)
294 3u5c_Y RP50, 40S ribosomal pro 24.8 1.4E+02 0.0049 19.2 6.3 46 24-70 34-84 (135)
295 1yjr_A Copper-transporting ATP 24.2 85 0.0029 16.3 7.6 46 13-64 5-50 (75)
296 1osd_A MERP, hypothetical prot 24.2 83 0.0028 16.2 6.9 55 14-74 5-63 (72)
297 2ofg_X Zinc-transporting ATPas 23.7 1.2E+02 0.0042 17.9 7.2 55 14-74 10-68 (111)
298 2c60_A Human mitogen-activated 23.6 1.3E+02 0.0046 18.4 4.8 51 20-78 46-97 (111)
299 3mdm_A Cholesterol 24-hydroxyl 23.4 1.8E+02 0.0062 21.7 5.9 38 27-73 13-50 (456)
300 4aj5_1 SKA3, spindle and kinet 23.3 34 0.0012 20.9 1.3 11 28-38 91-101 (101)
301 2fh0_A Hypothetical 16.0 kDa p 23.0 47 0.0016 19.5 1.9 19 19-37 48-66 (81)
302 3cjk_B Copper-transporting ATP 23.0 92 0.0031 16.3 6.3 54 15-74 5-62 (75)
303 2okq_A Hypothetical protein YB 22.7 1.6E+02 0.0056 19.1 6.4 46 29-74 49-109 (141)
304 2eqj_A Metal-response element- 22.6 52 0.0018 18.4 1.9 10 55-64 41-50 (66)
305 3rfw_A Cell-binding factor 2; 22.3 2E+02 0.0067 20.0 5.5 46 23-76 89-134 (252)
306 2npt_B Mitogen-activated prote 21.1 1.5E+02 0.005 17.9 5.7 51 20-78 35-86 (100)
307 2k2p_A Uncharacterized protein 21.1 1.1E+02 0.0039 17.1 3.4 55 14-74 24-79 (85)
308 3dhx_A Methionine import ATP-b 20.6 1.3E+02 0.0043 18.1 3.7 53 24-78 32-88 (106)
309 1fvq_A Copper-transporting ATP 20.5 1E+02 0.0034 15.8 5.4 55 15-75 5-62 (72)
310 2cfx_A HTH-type transcriptiona 20.4 1.7E+02 0.0057 18.3 6.3 47 27-77 78-124 (144)
311 3i3k_A Lanosterol 14-alpha dem 20.3 2.5E+02 0.0084 21.0 6.1 38 27-73 34-71 (461)
312 2ftr_A BH0200; structural geno 20.2 99 0.0034 18.6 3.1 20 55-74 61-80 (108)
No 1
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.93 E-value=1.9e-25 Score=143.44 Aligned_cols=96 Identities=67% Similarity=1.111 Sum_probs=89.3
Q ss_pred CCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccC
Q psy7051 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLD 81 (158)
Q Consensus 2 ~~~~p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~ 81 (158)
+++.|++..++..+|||+|||..+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|+.|++.||+..|.
T Consensus 2 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2dnm_A 2 SSGSSGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD 81 (103)
T ss_dssp CCCCCSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT
T ss_pred CCCCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46788888899999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred CceEEEEeeecCCCCC
Q psy7051 82 GRELRVQMARYGRPPS 97 (158)
Q Consensus 82 g~~i~v~~a~~~~~~~ 97 (158)
|+.|.|.+++...+..
T Consensus 82 g~~l~V~~a~~~~~~~ 97 (103)
T 2dnm_A 82 GRELRVQVARYGRRDL 97 (103)
T ss_dssp TBCCEEEECSSCCSCC
T ss_pred CcEEEEEECCcCCCCC
Confidence 9999999998655443
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.93 E-value=1.6e-24 Score=170.80 Aligned_cols=83 Identities=31% Similarity=0.526 Sum_probs=78.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
..+.++|||+|||+.|++++|+++|++||.|+.|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eec
Q psy7051 90 ARY 92 (158)
Q Consensus 90 a~~ 92 (158)
+..
T Consensus 179 a~~ 181 (437)
T 3pgw_S 179 ERG 181 (437)
T ss_pred eCC
Confidence 974
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=6.9e-25 Score=140.12 Aligned_cols=80 Identities=33% Similarity=0.549 Sum_probs=77.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeeec
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMARY 92 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~~ 92 (158)
.++|||+|||..+++++|+++|++||+|..|.++.++.++.++|||||+|.+.++|+.|++.|||..|.|+.|.|++|++
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 47899999999999999999999999999999999998999999999999999999999999999999999999999973
No 4
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.92 E-value=1.6e-24 Score=143.88 Aligned_cols=90 Identities=26% Similarity=0.416 Sum_probs=82.5
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
|....+..+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|.|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 33455668999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeeecCCCC
Q psy7051 87 VQMARYGRPP 96 (158)
Q Consensus 87 v~~a~~~~~~ 96 (158)
|+++....+.
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999865444
No 5
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=1.5e-23 Score=133.66 Aligned_cols=90 Identities=20% Similarity=0.323 Sum_probs=81.9
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCce
Q psy7051 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRE 84 (158)
Q Consensus 5 ~p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~ 84 (158)
.+.....+..+|||+|||..+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|+.|++ ||+..|.|+.
T Consensus 2 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 80 (99)
T 2dgs_A 2 SSGSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKK 80 (99)
T ss_dssp CCCCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeE
Confidence 344455677899999999999999999999999999999999998889999999999999999999998 9999999999
Q ss_pred EEEEeeecCCC
Q psy7051 85 LRVQMARYGRP 95 (158)
Q Consensus 85 i~v~~a~~~~~ 95 (158)
|.|.+++....
T Consensus 81 l~V~~a~~~~~ 91 (99)
T 2dgs_A 81 VEVKRAEPRDS 91 (99)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999985443
No 6
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.91 E-value=1.8e-23 Score=134.59 Aligned_cols=90 Identities=28% Similarity=0.426 Sum_probs=82.9
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCce
Q psy7051 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRE 84 (158)
Q Consensus 5 ~p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~ 84 (158)
.++....+..+|||+|||..+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|+.|++.||+..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 7 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp CCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 34455667789999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEeeecCC
Q psy7051 85 LRVQMARYGR 94 (158)
Q Consensus 85 i~v~~a~~~~ 94 (158)
|.|.+++...
T Consensus 87 l~v~~a~~~~ 96 (105)
T 1x5u_A 87 IRVNKASAHN 96 (105)
T ss_dssp CEEEETTTTS
T ss_pred EEEEECCCCC
Confidence 9999998543
No 7
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.91 E-value=1.2e-23 Score=134.99 Aligned_cols=91 Identities=31% Similarity=0.531 Sum_probs=83.5
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCce
Q psy7051 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRE 84 (158)
Q Consensus 5 ~p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~ 84 (158)
.|....++..+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.|++.||+..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 7 GPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp CSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34455667799999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEeeecCCC
Q psy7051 85 LRVQMARYGRP 95 (158)
Q Consensus 85 i~v~~a~~~~~ 95 (158)
|.|.+++....
T Consensus 87 l~v~~a~~~~~ 97 (103)
T 2cq0_A 87 LNVEWAKPSTN 97 (103)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999985443
No 8
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.91 E-value=9.8e-24 Score=137.21 Aligned_cols=80 Identities=20% Similarity=0.252 Sum_probs=77.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeeec
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMARY 92 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~~ 92 (158)
..+|||+||++.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|+.|++.|||..|.|+.|.|+++..
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999863
No 9
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.91 E-value=2.4e-24 Score=144.92 Aligned_cols=97 Identities=84% Similarity=1.408 Sum_probs=89.9
Q ss_pred CCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCccc
Q psy7051 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRML 80 (158)
Q Consensus 1 ~~~~~p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i 80 (158)
|+++.|++..++..+|||+|||..+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|+.||+.||+..|
T Consensus 35 ~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i 114 (135)
T 2lea_A 35 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL 114 (135)
T ss_dssp CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS
T ss_pred CCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 46788888888899999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred CCceEEEEeeecCCCCC
Q psy7051 81 DGRELRVQMARYGRPPS 97 (158)
Q Consensus 81 ~g~~i~v~~a~~~~~~~ 97 (158)
.|+.|.|.+++...++.
T Consensus 115 ~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 115 DGRELRVQMARYGRPPD 131 (135)
T ss_dssp SSSCCEEEECCCCCCCT
T ss_pred CCEEEEEEECCCCCCCc
Confidence 99999999998655443
No 10
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.91 E-value=3.6e-24 Score=135.73 Aligned_cols=85 Identities=25% Similarity=0.418 Sum_probs=78.4
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCc--eEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCc----ccC
Q psy7051 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGE--VGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGR----MLD 81 (158)
Q Consensus 8 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~--i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~----~i~ 81 (158)
...+...||||+|||+.+|+++|+++|++||. |..|.++.++.++.++|||||+|.+.++|+.|++.|||. .|+
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 44567899999999999999999999999995 678999999999999999999999999999999999997 489
Q ss_pred CceEEEEeeec
Q psy7051 82 GRELRVQMARY 92 (158)
Q Consensus 82 g~~i~v~~a~~ 92 (158)
|+.|.|+||+.
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999974
No 11
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=3.5e-23 Score=130.87 Aligned_cols=83 Identities=34% Similarity=0.531 Sum_probs=78.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
+..+|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|+.|++.||+..|.|+.|.|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45889999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred cCC
Q psy7051 92 YGR 94 (158)
Q Consensus 92 ~~~ 94 (158)
...
T Consensus 84 ~~~ 86 (95)
T 2dnz_A 84 ERL 86 (95)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 12
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.91 E-value=3.5e-23 Score=132.56 Aligned_cols=86 Identities=36% Similarity=0.607 Sum_probs=80.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
..++..+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.|++.||+..|.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34566899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eeecCC
Q psy7051 89 MARYGR 94 (158)
Q Consensus 89 ~a~~~~ 94 (158)
+++...
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 998544
No 13
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.90 E-value=2.3e-23 Score=132.79 Aligned_cols=90 Identities=24% Similarity=0.296 Sum_probs=82.5
Q ss_pred CCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEE--------EEEccCCCCCCcccEEEEEEcCHHHHHHHHH
Q psy7051 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD--------IYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73 (158)
Q Consensus 2 ~~~~p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 73 (158)
+...+++...+..+|||+|||..+++++|+++|++||.|.. |.++.++.++..+|||||+|.+.++|+.|++
T Consensus 2 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 81 (99)
T 2la6_A 2 GHHHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID 81 (99)
T ss_dssp CSSCSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 34455556667799999999999999999999999999999 9999998899999999999999999999999
Q ss_pred HhCCcccCCceEEEEeee
Q psy7051 74 AMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 74 ~l~g~~i~g~~i~v~~a~ 91 (158)
.|||..|.|+.|.|++|+
T Consensus 82 ~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 82 WFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHTTCBSSSSBCEEEECC
T ss_pred HhCCCEeCCcEEEEEecC
Confidence 999999999999999874
No 14
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.90 E-value=4.9e-23 Score=138.90 Aligned_cols=87 Identities=30% Similarity=0.494 Sum_probs=80.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
.+...+|||+|||..+++++|+++|+.||.|..|.|+.++.++..+|||||+|.+.++|+.|++.||+..|.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy7051 90 ARYGRPP 96 (158)
Q Consensus 90 a~~~~~~ 96 (158)
++....+
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9865444
No 15
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=6e-23 Score=130.78 Aligned_cols=86 Identities=31% Similarity=0.562 Sum_probs=80.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
..+..+|||+|||..+++++|+++|++||.|..|.|+.+..++..+|||||+|.+.++|+.|++.||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCCC
Q psy7051 90 ARYGRP 95 (158)
Q Consensus 90 a~~~~~ 95 (158)
++....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 986543
No 16
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=3e-23 Score=133.76 Aligned_cols=90 Identities=23% Similarity=0.351 Sum_probs=82.4
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCce
Q psy7051 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRE 84 (158)
Q Consensus 5 ~p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~ 84 (158)
.++....+..+|||+|||..+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|+.|++.|||..|.|+.
T Consensus 15 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 15 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 34444556789999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEeeecCC
Q psy7051 85 LRVQMARYGR 94 (158)
Q Consensus 85 i~v~~a~~~~ 94 (158)
|.|.+++...
T Consensus 95 l~V~~a~~~~ 104 (106)
T 1p27_B 95 ISVDWCFVRG 104 (106)
T ss_dssp CEEEESEESS
T ss_pred EEEEeecCCC
Confidence 9999998543
No 17
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.90 E-value=3.1e-23 Score=142.52 Aligned_cols=85 Identities=27% Similarity=0.550 Sum_probs=79.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
.++..+|||+|||..+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|+.||+.||+..|.|+.|.|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred eecCC
Q psy7051 90 ARYGR 94 (158)
Q Consensus 90 a~~~~ 94 (158)
++...
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 98543
No 18
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.90 E-value=4e-23 Score=133.15 Aligned_cols=89 Identities=21% Similarity=0.368 Sum_probs=81.5
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCccc---CC
Q psy7051 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRML---DG 82 (158)
Q Consensus 6 p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i---~g 82 (158)
++....+..+|||+|||..+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|+.|++.||+..+ .|
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 444556678999999999999999999999999999999999988899999999999999999999999999987 88
Q ss_pred ceEEEEeeecCC
Q psy7051 83 RELRVQMARYGR 94 (158)
Q Consensus 83 ~~i~v~~a~~~~ 94 (158)
+.|.|.+++...
T Consensus 86 ~~l~v~~a~~~~ 97 (106)
T 2dgp_A 86 RPIQVKPADSES 97 (106)
T ss_dssp SCCEEEECCCCS
T ss_pred ceEEEEECCccc
Confidence 999999998543
No 19
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=5.5e-23 Score=132.67 Aligned_cols=91 Identities=27% Similarity=0.506 Sum_probs=82.4
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccC-CCCCCcccEEEEEEcCHHHHHHHHHHh-CCcccCCc
Q psy7051 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRD-RFTRESRGFAFVRFFDKRDAEDALDAM-DGRMLDGR 83 (158)
Q Consensus 6 p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~-~~~~~~~g~afV~f~~~~~a~~a~~~l-~g~~i~g~ 83 (158)
+++......+|||+|||..+++++|+++|++||.|..|.|+.+ ..++..+|||||+|.+.++|+.|++.| |+..|.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3444566789999999999999999999999999999999988 778999999999999999999999999 99999999
Q ss_pred eEEEEeeecCCCC
Q psy7051 84 ELRVQMARYGRPP 96 (158)
Q Consensus 84 ~i~v~~a~~~~~~ 96 (158)
.|.|.+++.....
T Consensus 88 ~l~v~~a~~~~~~ 100 (107)
T 2cph_A 88 RLVLEWADSEVTV 100 (107)
T ss_dssp BCEEEECCCCCCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999999865443
No 20
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.90 E-value=1.4e-22 Score=132.44 Aligned_cols=89 Identities=31% Similarity=0.561 Sum_probs=81.9
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
.....+..+|||+|||..+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|+.||+.||+..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeeecCCC
Q psy7051 87 VQMARYGRP 95 (158)
Q Consensus 87 v~~a~~~~~ 95 (158)
|.+++....
T Consensus 89 V~~a~~~~~ 97 (115)
T 2dgo_A 89 TNWATRKPP 97 (115)
T ss_dssp EEESSCCCC
T ss_pred EEEccCCCC
Confidence 999985543
No 21
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.90 E-value=3.4e-23 Score=135.44 Aligned_cols=87 Identities=24% Similarity=0.285 Sum_probs=80.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
..++..+|||+|||..+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|+.||+.||+..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eeecCCC
Q psy7051 89 MARYGRP 95 (158)
Q Consensus 89 ~a~~~~~ 95 (158)
+++....
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9985443
No 22
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=2.3e-23 Score=133.42 Aligned_cols=88 Identities=35% Similarity=0.417 Sum_probs=81.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
...+..+|||+|||..+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|+.|++.||+..|.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34566899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eeecCCCC
Q psy7051 89 MARYGRPP 96 (158)
Q Consensus 89 ~a~~~~~~ 96 (158)
+++.....
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99855433
No 23
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=7.4e-23 Score=132.87 Aligned_cols=88 Identities=26% Similarity=0.458 Sum_probs=81.5
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhC------Cccc
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMD------GRML 80 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~------g~~i 80 (158)
+....+..+|||+|||+.+++++|+++|.+||.|..|.|+.++.++..+|||||+|.+.++|+.|++.|| +..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 4455667899999999999999999999999999999999998899999999999999999999999999 9999
Q ss_pred CCceEEEEeeecCC
Q psy7051 81 DGRELRVQMARYGR 94 (158)
Q Consensus 81 ~g~~i~v~~a~~~~ 94 (158)
.|+.|.|.++....
T Consensus 89 ~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 89 DGRQLKVDLAVTRD 102 (111)
T ss_dssp SSCEEEEECCCCCC
T ss_pred cCEEEEEEECCCCc
Confidence 99999999998543
No 24
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=2.8e-23 Score=131.56 Aligned_cols=85 Identities=27% Similarity=0.361 Sum_probs=79.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEE-EEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDI-YIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v-~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
.+..+|||+|||..+++++|+++|++||.|..| .|+.++.++..+|||||+|.+.++|+.|++.||+..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred eecCCC
Q psy7051 90 ARYGRP 95 (158)
Q Consensus 90 a~~~~~ 95 (158)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 985443
No 25
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.90 E-value=7e-23 Score=134.33 Aligned_cols=82 Identities=32% Similarity=0.567 Sum_probs=77.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
+...+|||+|||..+++++|+++|++||.|..|.|+.+. ++..+|||||+|.+.++|+.|++.|||..|.|+.|.|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 455899999999999999999999999999999999987 8899999999999999999999999999999999999999
Q ss_pred ecC
Q psy7051 91 RYG 93 (158)
Q Consensus 91 ~~~ 93 (158)
+..
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 844
No 26
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=4.9e-23 Score=129.92 Aligned_cols=86 Identities=31% Similarity=0.512 Sum_probs=79.5
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceE
Q psy7051 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGREL 85 (158)
Q Consensus 6 p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i 85 (158)
+....++..+|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|+.|++.||+..|.|+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 33444556899999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEeee
Q psy7051 86 RVQMAR 91 (158)
Q Consensus 86 ~v~~a~ 91 (158)
.|++|+
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999985
No 27
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=4.9e-23 Score=130.14 Aligned_cols=86 Identities=38% Similarity=0.535 Sum_probs=79.9
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
....++..+|||+|||..+++++|+++|++||.|..|.++.++.++..+|||||+|.+.++|+.|++.||+..|.|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33445668999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeeec
Q psy7051 87 VQMARY 92 (158)
Q Consensus 87 v~~a~~ 92 (158)
|++++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999874
No 28
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.90 E-value=6.8e-23 Score=132.95 Aligned_cols=89 Identities=25% Similarity=0.339 Sum_probs=82.0
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceE
Q psy7051 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGREL 85 (158)
Q Consensus 6 p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i 85 (158)
++....+..+|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|+.|++.|||..|.|+.|
T Consensus 19 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 19 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp CBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34445667899999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEeeecCC
Q psy7051 86 RVQMARYGR 94 (158)
Q Consensus 86 ~v~~a~~~~ 94 (158)
.|.++....
T Consensus 99 ~V~~a~~~~ 107 (110)
T 1oo0_B 99 QVDWCFVKG 107 (110)
T ss_dssp EEEESEESS
T ss_pred EEEEcccCC
Confidence 999998544
No 29
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=8.7e-23 Score=131.24 Aligned_cols=87 Identities=20% Similarity=0.368 Sum_probs=79.1
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCC-CCcccEEEEEEcCHHHHHHHHHHhCCcccCCceE
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFT-RESRGFAFVRFFDKRDAEDALDAMDGRMLDGREL 85 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i 85 (158)
+....+..+|||+|||..+++++|+++|++|| |..|.|+.++.+ +..+|||||+|.+.++|+.|| .||+..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 33445668999999999999999999999999 999999999877 889999999999999999999 999999999999
Q ss_pred EEEeeecCCC
Q psy7051 86 RVQMARYGRP 95 (158)
Q Consensus 86 ~v~~a~~~~~ 95 (158)
.|.+++....
T Consensus 87 ~V~~a~~~~~ 96 (104)
T 1wi8_A 87 RVDVADQAQD 96 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999985443
No 30
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.89 E-value=6.1e-23 Score=127.13 Aligned_cols=81 Identities=37% Similarity=0.484 Sum_probs=77.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
.+..+|||+|||..+++++|+++|++||.|..|.++.++.++..+|||||+|.+.++|+.|++.|||..|.|+.|.|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35589999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred e
Q psy7051 91 R 91 (158)
Q Consensus 91 ~ 91 (158)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 31
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=129.97 Aligned_cols=85 Identities=27% Similarity=0.418 Sum_probs=78.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
..+..+|||+|||+.+++++|+++|++||.|..|.|+.+ ++..++||||+|.+.++|+.|++.||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345689999999999999999999999999999999887 788999999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy7051 90 ARYGRPP 96 (158)
Q Consensus 90 a~~~~~~ 96 (158)
++....+
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9855433
No 32
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=2.7e-22 Score=131.31 Aligned_cols=86 Identities=33% Similarity=0.532 Sum_probs=79.7
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
+.......+|||+|||..+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|+.||+.|++ .|.|+.|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34455678999999999999999999999999999999999988999999999999999999999999998 89999999
Q ss_pred EEeeecC
Q psy7051 87 VQMARYG 93 (158)
Q Consensus 87 v~~a~~~ 93 (158)
|+++...
T Consensus 90 V~~a~~~ 96 (116)
T 2cqd_A 90 VNLAYLG 96 (116)
T ss_dssp EEESTTT
T ss_pred EEEcccC
Confidence 9999754
No 33
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=1.7e-22 Score=129.59 Aligned_cols=84 Identities=29% Similarity=0.483 Sum_probs=77.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
..++..+|||+|||..+++++|+++|++|| |..|.|+.++.++.++|||||+|.+.++|+.|+ .||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345668999999999999999999999996 999999999889999999999999999999999 899999999999999
Q ss_pred eeecCC
Q psy7051 89 MARYGR 94 (158)
Q Consensus 89 ~a~~~~ 94 (158)
+++...
T Consensus 89 ~a~~~~ 94 (103)
T 2dng_A 89 IAEGRK 94 (103)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998543
No 34
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.89 E-value=7.6e-23 Score=129.30 Aligned_cols=86 Identities=26% Similarity=0.342 Sum_probs=77.9
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceE
Q psy7051 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGREL 85 (158)
Q Consensus 6 p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i 85 (158)
.+...++..+|||+|||..+++++|+++|++||+|..|.|+.++. +.++|||||+|.+.++|+.|++.||+..|.|+.|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 344556678999999999999999999999999999999999874 8899999999999999999999999999999999
Q ss_pred EEEeeec
Q psy7051 86 RVQMARY 92 (158)
Q Consensus 86 ~v~~a~~ 92 (158)
.|.+++.
T Consensus 88 ~V~~a~~ 94 (95)
T 2ywk_A 88 NVSGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9999874
No 35
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.89 E-value=2.3e-22 Score=129.33 Aligned_cols=86 Identities=24% Similarity=0.341 Sum_probs=79.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCC---ceEE
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDG---RELR 86 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g---~~i~ 86 (158)
.++..+|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|+.||+.||+..|.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3456899999999999999999999999999999999987 78899999999999999999999999999988 9999
Q ss_pred EEeeecCCCC
Q psy7051 87 VQMARYGRPP 96 (158)
Q Consensus 87 v~~a~~~~~~ 96 (158)
|.+++....+
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999865443
No 36
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.89 E-value=4.8e-23 Score=134.89 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=65.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCce-----E
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRE-----L 85 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~-----i 85 (158)
....+|||+|||+.+++++|+++|++||+|..|.|+.+ |||||+|.+.++|+.||+.||+..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34578999999999999999999999999999999765 79999999999999999999999999998 6
Q ss_pred EEEeee
Q psy7051 86 RVQMAR 91 (158)
Q Consensus 86 ~v~~a~ 91 (158)
+|..+.
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 666554
No 37
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=2.9e-22 Score=129.69 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=70.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCC-----ceE
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDG-----REL 85 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g-----~~i 85 (158)
....+|||+|||+.+++++|+++|++||+|+.|.|+.+ |||||+|.+.++|+.||+.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45689999999999999999999999999999999765 799999999999999999999999999 999
Q ss_pred EEEeeec
Q psy7051 86 RVQMARY 92 (158)
Q Consensus 86 ~v~~a~~ 92 (158)
.|++++.
T Consensus 86 ~V~~a~~ 92 (108)
T 1x4c_A 86 RVKVDGP 92 (108)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 9999984
No 38
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=2.3e-23 Score=131.08 Aligned_cols=80 Identities=24% Similarity=0.375 Sum_probs=74.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcC-ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhC-CcccCCceEEEEeee
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCG-EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMD-GRMLDGRELRVQMAR 91 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~-g~~i~g~~i~v~~a~ 91 (158)
.+|||+|||..+++++|+++|++|| .|..|.|+.++.++.++|||||+|.+.++|+.|++.|+ +..|.|+.|.|++|+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 89999999999999999999999999999999998774 567999999999997
Q ss_pred cC
Q psy7051 92 YG 93 (158)
Q Consensus 92 ~~ 93 (158)
..
T Consensus 82 ~~ 83 (91)
T 2lxi_A 82 PK 83 (91)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 39
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.3e-22 Score=132.24 Aligned_cols=86 Identities=31% Similarity=0.409 Sum_probs=80.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceE--------EEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCccc
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVG--------DIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRML 80 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--------~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i 80 (158)
...+..+|||+|||..+++++|+++|++||.|. .|.|+.++.++..+|||||+|.+.++|+.||+.||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 455678999999999999999999999999998 699999988999999999999999999999999999999
Q ss_pred CCceEEEEeeecCC
Q psy7051 81 DGRELRVQMARYGR 94 (158)
Q Consensus 81 ~g~~i~v~~a~~~~ 94 (158)
.|+.|.|.+++...
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999998544
No 40
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=126.16 Aligned_cols=81 Identities=32% Similarity=0.554 Sum_probs=76.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
+..+|||+|||..+++++|+++|++||.|..|.++.++.++..+|||||+|.+.++|+.|++.|||..|.|+.|.|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred c
Q psy7051 92 Y 92 (158)
Q Consensus 92 ~ 92 (158)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 41
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.89 E-value=5.9e-23 Score=137.10 Aligned_cols=88 Identities=39% Similarity=0.553 Sum_probs=81.4
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
+...++..+|||+|||..+++++|+++|++||+|..|.|+.++.++..+|||||+|.+.++|+.||+.|||..|.|+.|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33455678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeeecCC
Q psy7051 87 VQMARYGR 94 (158)
Q Consensus 87 v~~a~~~~ 94 (158)
|++++..+
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998544
No 42
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.5e-22 Score=128.16 Aligned_cols=83 Identities=22% Similarity=0.421 Sum_probs=77.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
..+..+|||+|||..+++++|+++|++||.|..|.|+.+. ++..+|||||+|.+.++|+.|++.||+..|.|+.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999987 889999999999999999999999999999999999999
Q ss_pred eecC
Q psy7051 90 ARYG 93 (158)
Q Consensus 90 a~~~ 93 (158)
++..
T Consensus 93 a~~~ 96 (100)
T 2do4_A 93 SNSG 96 (100)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9844
No 43
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.89 E-value=1.4e-22 Score=130.83 Aligned_cols=84 Identities=30% Similarity=0.418 Sum_probs=78.6
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
++..++..+|||+|||..+++++|+++|++||.|..|.|+.+. ++..+|||||+|.+.++|+.|++.||+..|.|+.|.
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4455677899999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred EEeee
Q psy7051 87 VQMAR 91 (158)
Q Consensus 87 v~~a~ 91 (158)
|++++
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99986
No 44
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.89 E-value=1.2e-22 Score=140.85 Aligned_cols=89 Identities=26% Similarity=0.373 Sum_probs=80.9
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
|....+..+|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|.|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33455668999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeeecCCC
Q psy7051 87 VQMARYGRP 95 (158)
Q Consensus 87 v~~a~~~~~ 95 (158)
|.++....+
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999985543
No 45
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=3.1e-22 Score=129.65 Aligned_cols=85 Identities=38% Similarity=0.511 Sum_probs=75.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
...+..+|||+|||..+++++|+++|++||.|..|.|..+ +.+++||||+|.+.++|+.||+.||+..|.|+.|.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3455689999999999999999999999999999998654 4468999999999999999999999999999999999
Q ss_pred eeecCCCC
Q psy7051 89 MARYGRPP 96 (158)
Q Consensus 89 ~a~~~~~~ 96 (158)
+++.....
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99865433
No 46
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.89 E-value=1.9e-22 Score=124.36 Aligned_cols=79 Identities=33% Similarity=0.481 Sum_probs=76.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeeec
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMARY 92 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~~ 92 (158)
.+|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|+.|++.|||..|.|+.|.|.+++.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 6899999999999999999999999999999999988999999999999999999999999999999999999999974
No 47
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1e-22 Score=129.41 Aligned_cols=84 Identities=29% Similarity=0.527 Sum_probs=76.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCC---CCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRF---TRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
+..+|||+|||..+++++|+++|++||.|..|.|+.+.. ++..+|||||+|.+.++|+.|++.||+..|.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457899999999999999999999999999999988765 55789999999999999999999999999999999999
Q ss_pred eeecCCC
Q psy7051 89 MARYGRP 95 (158)
Q Consensus 89 ~a~~~~~ 95 (158)
+++....
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9985443
No 48
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=5.5e-22 Score=127.18 Aligned_cols=87 Identities=26% Similarity=0.375 Sum_probs=77.9
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
+....+..+|||+|||..+++++|+++|++||.|..|.|+.+..+ .+|||||+|.+.++|+.|++.||+..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 334556789999999999999999999999999999999988543 589999999999999999999999999999999
Q ss_pred EEeeecCCC
Q psy7051 87 VQMARYGRP 95 (158)
Q Consensus 87 v~~a~~~~~ 95 (158)
|.+++....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 999986443
No 49
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=129.35 Aligned_cols=84 Identities=29% Similarity=0.439 Sum_probs=79.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceE-EEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCce----E
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVG-DIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRE----L 85 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~----i 85 (158)
.+..+|||+|||..+++++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|+.|++.|||..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4568999999999999999999999999999 9999999889999999999999999999999999999999999 9
Q ss_pred EEEeeecCC
Q psy7051 86 RVQMARYGR 94 (158)
Q Consensus 86 ~v~~a~~~~ 94 (158)
+|.+++...
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998554
No 50
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.89 E-value=2.1e-22 Score=127.66 Aligned_cols=81 Identities=21% Similarity=0.352 Sum_probs=77.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeeec
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMARY 92 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~~ 92 (158)
..+|||+|||..+++++|+++|++||.|..|.++.++.++..+|||||+|.+.++|+.|++.|||..|.|+.|.|.+++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 47899999999999999999999999999999999988899999999999999999999999999999999999999985
Q ss_pred C
Q psy7051 93 G 93 (158)
Q Consensus 93 ~ 93 (158)
.
T Consensus 82 ~ 82 (96)
T 2x1f_A 82 S 82 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 51
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=7.3e-22 Score=126.62 Aligned_cols=87 Identities=29% Similarity=0.458 Sum_probs=77.7
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
+.......+|||+|||..+++++|+++|++||.|..|.|+.+.. ..+|||||+|.+.++|+.|++.||+..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33445668999999999999999999999999999999988753 3789999999999999999999999999999999
Q ss_pred EEeeecCCC
Q psy7051 87 VQMARYGRP 95 (158)
Q Consensus 87 v~~a~~~~~ 95 (158)
|.+++....
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cq3_A 87 VNNATARVM 95 (103)
T ss_dssp EEECCSSCC
T ss_pred EEEcccCCC
Confidence 999985443
No 52
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.89 E-value=2.4e-23 Score=130.56 Aligned_cols=82 Identities=26% Similarity=0.370 Sum_probs=72.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcC--ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCG--EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
.+|||+|||..+++++|+++|++|| .|..|.++.++.++.++|||||+|.+.++|+.|++.|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999899999999999999999999999999999999999999998
Q ss_pred cCCC
Q psy7051 92 YGRP 95 (158)
Q Consensus 92 ~~~~ 95 (158)
...+
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 5543
No 53
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.7e-22 Score=128.78 Aligned_cols=85 Identities=25% Similarity=0.294 Sum_probs=78.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhh-cCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcc-cCCceEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFER-CGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRM-LDGRELR 86 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~-i~g~~i~ 86 (158)
...+..+|||+|||..+++++|+++|++ ||.|..|.|+.+. ++..+|||||+|.+.++|+.|++.||+.. |.|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3455688999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EEeeecCC
Q psy7051 87 VQMARYGR 94 (158)
Q Consensus 87 v~~a~~~~ 94 (158)
|.++....
T Consensus 84 v~~a~~~~ 91 (104)
T 2dhg_A 84 LSVAIPKA 91 (104)
T ss_dssp CCBCCCCC
T ss_pred EEEccCCC
Confidence 99997443
No 54
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.88 E-value=1.7e-22 Score=132.66 Aligned_cols=82 Identities=28% Similarity=0.313 Sum_probs=77.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
.++..+|||+|||..+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|+.|++.|||..|.|+.|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred ee
Q psy7051 90 AR 91 (158)
Q Consensus 90 a~ 91 (158)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 55
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=130.36 Aligned_cols=86 Identities=31% Similarity=0.483 Sum_probs=80.2
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
+...++..+|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|+.|++.|||..|.|+.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44456678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeeec
Q psy7051 87 VQMARY 92 (158)
Q Consensus 87 v~~a~~ 92 (158)
|.+++.
T Consensus 100 V~~a~~ 105 (108)
T 2jrs_A 100 VGHVTE 105 (108)
T ss_dssp EECSCS
T ss_pred EEEccc
Confidence 999873
No 56
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.88 E-value=3.7e-22 Score=125.38 Aligned_cols=84 Identities=31% Similarity=0.423 Sum_probs=77.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
..+..+|||+|||..+++++|+++|++||.|..|.++.+ ++..+|||||+|.+.++|+.|++.||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356689999999999999999999999999999999874 788899999999999999999999999999999999999
Q ss_pred eecCCC
Q psy7051 90 ARYGRP 95 (158)
Q Consensus 90 a~~~~~ 95 (158)
++....
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 985543
No 57
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.6e-21 Score=127.14 Aligned_cols=87 Identities=26% Similarity=0.315 Sum_probs=79.4
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
.....+..+|||+|||..+++++|+++|.+||.|..|.|+.++ ++..+|||||+|.+.++|+.|++.||+..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3344566899999999999999999999999999999999887 688999999999999999999999999999999999
Q ss_pred EEeeecCC
Q psy7051 87 VQMARYGR 94 (158)
Q Consensus 87 v~~a~~~~ 94 (158)
|.+++...
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 99997543
No 58
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=125.37 Aligned_cols=83 Identities=29% Similarity=0.502 Sum_probs=76.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCC-cccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRE-SRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~-~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
...+|||+|||..+++++|+++|++||.|..|.++.+..++. .+|||||+|.+.++|+.|++.|||..|.|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 347899999999999999999999999999999998876665 7899999999999999999999999999999999999
Q ss_pred ecCC
Q psy7051 91 RYGR 94 (158)
Q Consensus 91 ~~~~ 94 (158)
....
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7544
No 59
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.9e-22 Score=129.79 Aligned_cols=88 Identities=32% Similarity=0.446 Sum_probs=80.5
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceE
Q psy7051 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGREL 85 (158)
Q Consensus 6 p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i 85 (158)
.+...++..+|||+|||+.+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|+.||+. ++..|.|+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 344456678999999999999999999999999999999999988999999999999999999999988 9999999999
Q ss_pred EEEeeecCC
Q psy7051 86 RVQMARYGR 94 (158)
Q Consensus 86 ~v~~a~~~~ 94 (158)
.|.+++...
T Consensus 88 ~V~~a~~~~ 96 (105)
T 2dh8_A 88 DPKPCTPRG 96 (105)
T ss_dssp BCCCSCCSS
T ss_pred EEEEccCCC
Confidence 999997443
No 60
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.88 E-value=4.3e-22 Score=123.89 Aligned_cols=84 Identities=35% Similarity=0.469 Sum_probs=75.8
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceE
Q psy7051 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGREL 85 (158)
Q Consensus 6 p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i 85 (158)
++....+..+|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|+.|++ +++..|+|+.|
T Consensus 4 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i 82 (87)
T 3s7r_A 4 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVI 82 (87)
T ss_dssp ---CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEE
Confidence 34455677899999999999999999999999999999999998899999999999999999999995 58889999999
Q ss_pred EEEee
Q psy7051 86 RVQMA 90 (158)
Q Consensus 86 ~v~~a 90 (158)
.|++|
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 61
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=8e-22 Score=125.05 Aligned_cols=81 Identities=20% Similarity=0.303 Sum_probs=74.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHH----HHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLR----RVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
...++|||+|||..+++++|+ ++|++||.|..|.|+.+..+ ++||||+|.+.++|+.|++.|||..|.|+.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 445899999999999999999 99999999999999988655 78999999999999999999999999999999
Q ss_pred EEeeecCC
Q psy7051 87 VQMARYGR 94 (158)
Q Consensus 87 v~~a~~~~ 94 (158)
|++++...
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997543
No 62
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=3.2e-22 Score=130.96 Aligned_cols=79 Identities=24% Similarity=0.371 Sum_probs=73.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeeec
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMARY 92 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~~ 92 (158)
.++|||+|||+.+++++|+++|++||.|..|.|+.+. +..+|||||+|.+.++|+.||+.||+..|.|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4789999999999999999999999999999999885 34789999999999999999999999999999999999874
Q ss_pred C
Q psy7051 93 G 93 (158)
Q Consensus 93 ~ 93 (158)
.
T Consensus 83 ~ 83 (115)
T 4f25_A 83 R 83 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 63
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.88 E-value=5e-22 Score=124.00 Aligned_cols=80 Identities=33% Similarity=0.630 Sum_probs=76.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeeec
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMARY 92 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~~ 92 (158)
..+|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|+.|+ .||+..|.|+.|.|.+++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 468999999999999999999999999999999999889999999999999999999999 9999999999999999975
Q ss_pred C
Q psy7051 93 G 93 (158)
Q Consensus 93 ~ 93 (158)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 64
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.88 E-value=2.8e-22 Score=130.33 Aligned_cols=84 Identities=14% Similarity=0.161 Sum_probs=71.6
Q ss_pred CCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcC-ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccC
Q psy7051 3 YGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCG-EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLD 81 (158)
Q Consensus 3 ~~~p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~ 81 (158)
|+.+|+ ...+|||+|||+.+++++|+++|++|| +|..+.+... .++|||||+|.+.++|+.||+.|||..|.
T Consensus 21 ~~~~p~---~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~ 93 (111)
T 2jvr_A 21 MSKLPA---KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFR 93 (111)
T ss_dssp ----CC---CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEET
T ss_pred cCCCCC---CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 555544 348999999999999999999999999 8999988543 36899999999999999999999999999
Q ss_pred CceEEEEeeecC
Q psy7051 82 GRELRVQMARYG 93 (158)
Q Consensus 82 g~~i~v~~a~~~ 93 (158)
|+.|.|++++..
T Consensus 94 Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 94 GSVITVERDDNP 105 (111)
T ss_dssp TEEEEEEESCC-
T ss_pred CeEEEEEECCCC
Confidence 999999998743
No 65
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=1.1e-21 Score=134.77 Aligned_cols=86 Identities=85% Similarity=1.388 Sum_probs=80.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
....+|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|.|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy7051 91 RYGRPP 96 (158)
Q Consensus 91 ~~~~~~ 96 (158)
+..+++
T Consensus 148 ~~~~~~ 153 (158)
T 2kn4_A 148 RYGRPP 153 (158)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 865544
No 66
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=122.44 Aligned_cols=83 Identities=25% Similarity=0.374 Sum_probs=74.5
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCce
Q psy7051 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRE 84 (158)
Q Consensus 5 ~p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~ 84 (158)
.++....+..+|||+|||..+++++|+++|++||.|..|.++. +||||+|.+.++|+.|++.||+..|.|+.
T Consensus 2 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 2 SSGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp CCSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 3455566779999999999999999999999999999999863 49999999999999999999999999999
Q ss_pred EEEEeeecCCC
Q psy7051 85 LRVQMARYGRP 95 (158)
Q Consensus 85 i~v~~a~~~~~ 95 (158)
|.|.+++....
T Consensus 74 l~V~~a~~~~~ 84 (92)
T 2dgt_A 74 MHVQLSTSRLR 84 (92)
T ss_dssp EEEEESSCCCS
T ss_pred EEEEEccCCCC
Confidence 99999985443
No 67
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=3e-22 Score=127.30 Aligned_cols=83 Identities=17% Similarity=0.235 Sum_probs=77.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
.+...+|||+|||..+++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|+.|++.||+..|.|+.|.|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999998888888888999999999999999999999999999999999999999
Q ss_pred eec
Q psy7051 90 ARY 92 (158)
Q Consensus 90 a~~ 92 (158)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 873
No 68
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.1e-21 Score=124.50 Aligned_cols=86 Identities=28% Similarity=0.435 Sum_probs=78.1
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
+....+..+|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+ ++..|+|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3345567899999999999999999999999999999999998889999999999999999999997 57899999999
Q ss_pred EEeeecCC
Q psy7051 87 VQMARYGR 94 (158)
Q Consensus 87 v~~a~~~~ 94 (158)
|.++....
T Consensus 87 v~~a~~~~ 94 (103)
T 2cqg_A 87 CKLPNSKQ 94 (103)
T ss_dssp EECCCTTC
T ss_pred EEecCCCC
Confidence 99998543
No 69
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.87 E-value=1.8e-22 Score=129.07 Aligned_cols=80 Identities=23% Similarity=0.338 Sum_probs=76.6
Q ss_pred CcEEEEeCCCC------CCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCC-ceE
Q psy7051 13 MVSLKVDNLTY------RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDG-REL 85 (158)
Q Consensus 13 ~~~l~V~nl~~------~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g-~~i 85 (158)
..+|||+|||. .+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|+.|++.|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 47899999999 99999999999999999999999999899999999999999999999999999999999 999
Q ss_pred EEEeeec
Q psy7051 86 RVQMARY 92 (158)
Q Consensus 86 ~v~~a~~ 92 (158)
.|.++..
T Consensus 86 ~V~~a~~ 92 (100)
T 3ns6_A 86 FLYTMKD 92 (100)
T ss_dssp EEEESHH
T ss_pred EEEECch
Confidence 9999863
No 70
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.87 E-value=3.3e-22 Score=133.71 Aligned_cols=88 Identities=20% Similarity=0.382 Sum_probs=80.2
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEE--EEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCc----c
Q psy7051 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD--IYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGR----M 79 (158)
Q Consensus 6 p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~----~ 79 (158)
++....+..+|||+|||+.+++++|+++|++||.|.. |.|+.++.++.++|||||+|.+. +|+.|++.|||. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3344566789999999999999999999999999976 99999999999999999999999 999999999999 9
Q ss_pred cCCceEEEEeeecCC
Q psy7051 80 LDGRELRVQMARYGR 94 (158)
Q Consensus 80 i~g~~i~v~~a~~~~ 94 (158)
|.|+.|.|.+++...
T Consensus 95 ~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 95 IDGKTINVEFAKGSK 109 (131)
T ss_dssp GGGCCCCCEECCCSC
T ss_pred CCCEEEEEEECCCCC
Confidence 999999999998543
No 71
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=9.3e-22 Score=126.16 Aligned_cols=82 Identities=21% Similarity=0.220 Sum_probs=74.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
......+|||+|||+.+++++|+++|++||. +.|.|+.++ +++++|||||+|.+.++|+.|| .+|+..|.++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 3445689999999999999999999999994 599999997 8999999999999999999999 579999999999999
Q ss_pred eeecC
Q psy7051 89 MARYG 93 (158)
Q Consensus 89 ~a~~~ 93 (158)
++...
T Consensus 88 ~~~~~ 92 (102)
T 1wez_A 88 LNSTA 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 88743
No 72
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.87 E-value=7.3e-22 Score=135.80 Aligned_cols=79 Identities=23% Similarity=0.416 Sum_probs=76.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcC--ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCG--EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
..+|||+|||+.+++++|+++|++|| .|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|.|+.|.|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 46999999999999999999999999 9999999999999999999999999999999999999999999999999998
Q ss_pred e
Q psy7051 91 R 91 (158)
Q Consensus 91 ~ 91 (158)
.
T Consensus 135 ~ 135 (156)
T 3n9u_C 135 T 135 (156)
T ss_dssp C
T ss_pred C
Confidence 6
No 73
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.87 E-value=1.9e-22 Score=127.43 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=75.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
+..+|||+|||+.+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|+.|++.||+..|.|+.|.|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 35899999999999999999999999999888888888889999999999999999999999999999999999999886
Q ss_pred c
Q psy7051 92 Y 92 (158)
Q Consensus 92 ~ 92 (158)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 74
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=122.00 Aligned_cols=85 Identities=18% Similarity=0.295 Sum_probs=77.6
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceE
Q psy7051 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGREL 85 (158)
Q Consensus 6 p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i 85 (158)
+........+|||+|||..+++++|+++|++| .|..|.|+.+ .++.++|||||+|.+.++|+.|++ ||+..|.|+.|
T Consensus 3 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i 79 (91)
T 2dgw_A 3 SGSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYI 79 (91)
T ss_dssp CCCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEE
T ss_pred CCCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEE
Confidence 33444567899999999999999999999999 9999999998 689999999999999999999999 99999999999
Q ss_pred EEEeeecC
Q psy7051 86 RVQMARYG 93 (158)
Q Consensus 86 ~v~~a~~~ 93 (158)
.|.+++..
T Consensus 80 ~v~~a~~~ 87 (91)
T 2dgw_A 80 EVFREKSG 87 (91)
T ss_dssp EEEEESSC
T ss_pred EEEECCcC
Confidence 99999743
No 75
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2.8e-21 Score=121.03 Aligned_cols=77 Identities=31% Similarity=0.498 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
++..+|||+|||..+++++|+++|++||.|..|.++ ++||||+|.+.++|+.|++.||+..|.|+.|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 456899999999999999999999999999999986 579999999999999999999999999999999999
Q ss_pred ecCCC
Q psy7051 91 RYGRP 95 (158)
Q Consensus 91 ~~~~~ 95 (158)
+....
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 85443
No 76
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4e-22 Score=130.49 Aligned_cols=81 Identities=30% Similarity=0.498 Sum_probs=76.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeeec
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMARY 92 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~~ 92 (158)
..+|||+|||..+++++|+++|.+||.|..|.|+.++.++..+|||||+|.+.++|+.||+. ++..|.|+.|.|.++..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 47999999999999999999999999999999999988899999999999999999999987 99999999999999985
Q ss_pred CC
Q psy7051 93 GR 94 (158)
Q Consensus 93 ~~ 94 (158)
..
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 77
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=124.81 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=71.2
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcc--cCCce
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRM--LDGRE 84 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~--i~g~~ 84 (158)
....++..+|||+|||..+++++|.++|++||.|+.|.++.. +|+|||+|++.++|++|++.|++.. |.|+.
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 334566789999999999999999999999999999998753 6899999999999999999999875 78999
Q ss_pred EEEEeeec
Q psy7051 85 LRVQMARY 92 (158)
Q Consensus 85 i~v~~a~~ 92 (158)
|.|+|++.
T Consensus 89 i~V~~S~~ 96 (100)
T 3r27_A 89 AFVNYSTS 96 (100)
T ss_dssp EEEEECSC
T ss_pred EEEEeccc
Confidence 99999974
No 78
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.7e-22 Score=129.68 Aligned_cols=84 Identities=30% Similarity=0.509 Sum_probs=78.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
.....+|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|+.|++.|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34557899999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred eecC
Q psy7051 90 ARYG 93 (158)
Q Consensus 90 a~~~ 93 (158)
+...
T Consensus 85 a~~~ 88 (104)
T 1p1t_A 85 AASE 88 (104)
T ss_dssp TTCT
T ss_pred CCCc
Confidence 8744
No 79
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=125.32 Aligned_cols=87 Identities=31% Similarity=0.428 Sum_probs=76.6
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCce
Q psy7051 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRE 84 (158)
Q Consensus 5 ~p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~ 84 (158)
.|....++..+|||+|||..+++++|+++|++|+ .|.++.+..++..+|||||+|.+.++|+.||+.||+..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2fc8_A 7 GPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 83 (102)
T ss_dssp TTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3445566778999999999999999999999884 5667777778889999999999999999999999999999999
Q ss_pred EEEEeeecCC
Q psy7051 85 LRVQMARYGR 94 (158)
Q Consensus 85 i~v~~a~~~~ 94 (158)
|.|.+++...
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2fc8_A 84 VTLDWAKPKG 93 (102)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999998543
No 80
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.87 E-value=2.5e-21 Score=128.18 Aligned_cols=85 Identities=28% Similarity=0.400 Sum_probs=79.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
...+..+|||+|||..+++++|+++|++||.|..|.|+.+. ++..+|||||+|.+.++|+.|++.|||..|.|+.|.|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44566899999999999999999999999999999999988 88899999999999999999999999999999999999
Q ss_pred eeecCC
Q psy7051 89 MARYGR 94 (158)
Q Consensus 89 ~a~~~~ 94 (158)
+|....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 998544
No 81
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.87 E-value=1e-21 Score=129.98 Aligned_cols=82 Identities=32% Similarity=0.624 Sum_probs=77.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeeec
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMARY 92 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~~ 92 (158)
..+|||+|||..+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|+.|+ .|||..|.|+.|.|.+++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 479999999999999999999999999999999999889999999999999999999999 7999999999999999985
Q ss_pred CCC
Q psy7051 93 GRP 95 (158)
Q Consensus 93 ~~~ 95 (158)
..+
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
No 82
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.87 E-value=6e-21 Score=122.40 Aligned_cols=79 Identities=23% Similarity=0.433 Sum_probs=71.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
...+..+|||+|||..+++++|+++|++||.|..|.++ ++||||+|.+.++|+.|++.||+..|.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34556899999999999999999999999999999985 3599999999999999999999999999999999
Q ss_pred eeecCCC
Q psy7051 89 MARYGRP 95 (158)
Q Consensus 89 ~a~~~~~ 95 (158)
+++....
T Consensus 79 ~a~~~~~ 85 (103)
T 2dgu_A 79 FAKPPDQ 85 (103)
T ss_dssp ECCCCCC
T ss_pred EcCCCcc
Confidence 9985543
No 83
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=9.6e-22 Score=127.87 Aligned_cols=87 Identities=18% Similarity=0.297 Sum_probs=77.5
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHH---HHhhhcCceEEEEEccCCCCC---CcccEEEEEEcCHHHHHHHHHHhCCccc
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLR---RVFERCGEVGDIYIPRDRFTR---ESRGFAFVRFFDKRDAEDALDAMDGRML 80 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~---~~f~~~G~i~~v~~~~~~~~~---~~~g~afV~f~~~~~a~~a~~~l~g~~i 80 (158)
........+|||+|||+.+++++|. ++|++||+|..|.|+.+..++ .++|||||+|.+.++|+.||+.||+..|
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 3345566899999999999999999 999999999999998887644 4569999999999999999999999999
Q ss_pred CCceEEEEeeecC
Q psy7051 81 DGRELRVQMARYG 93 (158)
Q Consensus 81 ~g~~i~v~~a~~~ 93 (158)
.|+.|.|.+++..
T Consensus 89 ~gr~l~V~~a~~k 101 (111)
T 2cpi_A 89 DGRTLKASLGTTK 101 (111)
T ss_dssp TTEEEEEESCCCC
T ss_pred CCEEEEEEecccc
Confidence 9999999999844
No 84
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=7.8e-22 Score=126.74 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=74.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
....+|||+|||+.+++++|+++|++||+|..|.|+.++. +.++|||||+|.+.++|+.||+ +++..|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3457899999999999999999999999999999999986 8899999999999999999997 8999999999999987
Q ss_pred e
Q psy7051 91 R 91 (158)
Q Consensus 91 ~ 91 (158)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 5
No 85
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.8e-22 Score=129.76 Aligned_cols=78 Identities=31% Similarity=0.465 Sum_probs=75.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeeec
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMARY 92 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~~ 92 (158)
.+|||+|||..+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|+.|| .||+..|.|+.|.|.+++.
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 69999999999999999999999999999999999888999999999999999999999 9999999999999999874
No 86
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.5e-22 Score=125.41 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=75.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
++..+|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|+.|++.|||..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 34589999999999999999999999999999999999889999999999999999999999999999999999887655
Q ss_pred e
Q psy7051 91 R 91 (158)
Q Consensus 91 ~ 91 (158)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 87
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=123.42 Aligned_cols=82 Identities=28% Similarity=0.535 Sum_probs=73.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
...+..+|||+|||..+++++|+++|++||.| .++.+ .++..+|||||+|.+.++|+.|++.||+..|.|+.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44567899999999999999999999999987 45555 578899999999999999999999999999999999999
Q ss_pred eeecCC
Q psy7051 89 MARYGR 94 (158)
Q Consensus 89 ~a~~~~ 94 (158)
+++...
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 998543
No 88
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=125.80 Aligned_cols=85 Identities=22% Similarity=0.407 Sum_probs=76.1
Q ss_pred CCCCCCCCCcEEEEeCCCCCC------CHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCc
Q psy7051 5 RPPPRIEGMVSLKVDNLTYRT------TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGR 78 (158)
Q Consensus 5 ~p~~~~~~~~~l~V~nl~~~~------~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 78 (158)
.|+.......+|||+|||..+ ++++|+++|++||.|..|.|+ ..++.++|||||+|.+.++|+.|++.|||.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 7 RPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp CCCSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCCCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCc
Confidence 344444556899999999999 789999999999999999888 357889999999999999999999999999
Q ss_pred ccCCc-eEEEEeee
Q psy7051 79 MLDGR-ELRVQMAR 91 (158)
Q Consensus 79 ~i~g~-~i~v~~a~ 91 (158)
.|.|+ .|.|.++.
T Consensus 85 ~~~g~~~l~V~~a~ 98 (105)
T 2nlw_A 85 KLDKQHTFRVNLFT 98 (105)
T ss_dssp ECSTTCEEEEECSC
T ss_pred ccCCCceEEEEEcc
Confidence 99998 99999986
No 89
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.6e-22 Score=129.53 Aligned_cols=86 Identities=30% Similarity=0.329 Sum_probs=72.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
++..+|||+|||..+++++|+++|.+||.|..|.+..+..++..+|||||+|.+.++|+.|++.||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45689999999999999999999999999843322222226778899999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy7051 91 RYGRPP 96 (158)
Q Consensus 91 ~~~~~~ 96 (158)
+.....
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 865443
No 90
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.86 E-value=2.1e-21 Score=125.93 Aligned_cols=84 Identities=30% Similarity=0.494 Sum_probs=75.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
.++..+|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|+.|++.+ +..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 445689999999999999999999999999999999999888999999999999999999999875 5899999999999
Q ss_pred eecCC
Q psy7051 90 ARYGR 94 (158)
Q Consensus 90 a~~~~ 94 (158)
+....
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98543
No 91
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.6e-21 Score=122.83 Aligned_cols=82 Identities=21% Similarity=0.313 Sum_probs=75.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEE-EEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD-IYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRV 87 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~-v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v 87 (158)
......+|||+|||+.+++++|+++|++||.|.. |.|+.+ .+++++|||||+|.+.++|+.||+. |+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3455689999999999999999999999999987 888888 6899999999999999999999986 999999999999
Q ss_pred Eeeec
Q psy7051 88 QMARY 92 (158)
Q Consensus 88 ~~a~~ 92 (158)
.++..
T Consensus 89 ~~~~~ 93 (104)
T 1wg5_A 89 FKSSR 93 (104)
T ss_dssp EEECT
T ss_pred EECCH
Confidence 98863
No 92
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-21 Score=125.41 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=70.6
Q ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCc--ccCCceEE
Q psy7051 10 IEGMVSLKVDNLTY-RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGR--MLDGRELR 86 (158)
Q Consensus 10 ~~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~--~i~g~~i~ 86 (158)
.++..+|||+|||+ .+++++|+++|++||.|..|.|+.+ ++||||+|++.++|+.|++.||+. .|.|+.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 45678999999999 9999999999999999999999865 479999999999999999998864 59999999
Q ss_pred EEeeecC
Q psy7051 87 VQMARYG 93 (158)
Q Consensus 87 v~~a~~~ 93 (158)
|++|+..
T Consensus 86 V~~a~~~ 92 (102)
T 1x4d_A 86 VHLSQKY 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9999843
No 93
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.86 E-value=4.8e-22 Score=126.98 Aligned_cols=82 Identities=22% Similarity=0.403 Sum_probs=73.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCC-CCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDR-FTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRV 87 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v 87 (158)
......+|||+|||..+++++|+++|++|| |..|.|+.+. .++..+|||||+|.+.++|+.|+ .|||..|.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345568999999999999999999999999 9999999987 58999999999999999999999 89999999999999
Q ss_pred Eeeec
Q psy7051 88 QMARY 92 (158)
Q Consensus 88 ~~a~~ 92 (158)
++++.
T Consensus 93 ~~a~~ 97 (100)
T 2j76_E 93 DVADQ 97 (100)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 99874
No 94
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.86 E-value=6e-22 Score=119.92 Aligned_cols=75 Identities=27% Similarity=0.431 Sum_probs=71.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 15 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
+|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++ ||+..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998889999999999999999999997 9999999999999875
No 95
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7.2e-21 Score=123.08 Aligned_cols=84 Identities=21% Similarity=0.244 Sum_probs=77.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCc-eEEEEEc-cCCCCCCcccEEEEEEcCHHHHHHHHHHhC--CcccCCceEE
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGE-VGDIYIP-RDRFTRESRGFAFVRFFDKRDAEDALDAMD--GRMLDGRELR 86 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~-i~~v~~~-~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--g~~i~g~~i~ 86 (158)
.+..+|||+|||..+++++|+++|.+||. |..|.++ .+..++..+|||||+|.+.++|+.|++.|+ +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999998 788788899999999999999999999996 5899999999
Q ss_pred EEeeecCC
Q psy7051 87 VQMARYGR 94 (158)
Q Consensus 87 v~~a~~~~ 94 (158)
|.+++...
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99998544
No 96
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=126.63 Aligned_cols=86 Identities=21% Similarity=0.372 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCC
Q psy7051 3 YGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDG 82 (158)
Q Consensus 3 ~~~p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g 82 (158)
.+.|++......+|||+|||+.+++++|+++|++| .|..|.|+.++. ++++|||||+|.+.++|++|| .||+..|+|
T Consensus 6 ~~~~~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g 82 (109)
T 2dnn_A 6 SGKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ 82 (109)
T ss_dssp CCCCCCCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 34555555566899999999999999999999999 899999999874 889999999999999999999 699999999
Q ss_pred ceEEEEeee
Q psy7051 83 RELRVQMAR 91 (158)
Q Consensus 83 ~~i~v~~a~ 91 (158)
+.|.|..+.
T Consensus 83 r~i~V~~a~ 91 (109)
T 2dnn_A 83 RYVEVSPAT 91 (109)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEECC
Confidence 999998875
No 97
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.8e-21 Score=124.93 Aligned_cols=76 Identities=13% Similarity=0.241 Sum_probs=69.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCC--cccCCceEEEEe
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG--RMLDGRELRVQM 89 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~i~g~~i~v~~ 89 (158)
+..+|||+|||+.+++++|+++|++||+|..|.|+.+ +|||||+|.+.++|+.|++.|++ ..|.|+.|.|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3588999999999999999999999999999999875 68999999999999999998864 689999999999
Q ss_pred eecC
Q psy7051 90 ARYG 93 (158)
Q Consensus 90 a~~~ 93 (158)
++..
T Consensus 89 A~~~ 92 (105)
T 1sjq_A 89 SNHK 92 (105)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 9743
No 98
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=5.7e-21 Score=121.19 Aligned_cols=77 Identities=30% Similarity=0.407 Sum_probs=71.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccC--CceEEEE
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLD--GRELRVQ 88 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~--g~~i~v~ 88 (158)
++..+|||+|||..+++++|+++|++||.|..|.++.+ ++||||+|.+.++|+.|++.||+..|. |+.|.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34578999999999999999999999999999998754 679999999999999999999999999 9999999
Q ss_pred eeecC
Q psy7051 89 MARYG 93 (158)
Q Consensus 89 ~a~~~ 93 (158)
+++..
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99854
No 99
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.86 E-value=3.8e-21 Score=129.50 Aligned_cols=81 Identities=37% Similarity=0.470 Sum_probs=76.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
..+..+|||+|||..+++++|+++|++||.|..|.++.++.++..+|||||+|.+.++|+.|++.||+..|.|+.|.|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred e
Q psy7051 90 A 90 (158)
Q Consensus 90 a 90 (158)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 100
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.9e-21 Score=125.26 Aligned_cols=84 Identities=31% Similarity=0.528 Sum_probs=76.0
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
+.......+|||+|||..+++++|+++|++||.|..|.++.+. +..+|||||+|.+.++|+.|++.|||..|+|+.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3344566899999999999999999999999999999998875 34789999999999999999999999999999999
Q ss_pred EEeeec
Q psy7051 87 VQMARY 92 (158)
Q Consensus 87 v~~a~~ 92 (158)
|++++.
T Consensus 101 V~~a~~ 106 (109)
T 2err_A 101 VNNATA 106 (109)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999873
No 101
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=8.4e-21 Score=122.07 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=71.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCc--ccCCceEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGR--MLDGRELR 86 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~--~i~g~~i~ 86 (158)
..++..+|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|+.|++.|++. .|.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4566789999999999999999999999999999988764 689999999999999999988754 59999999
Q ss_pred EEeeecC
Q psy7051 87 VQMARYG 93 (158)
Q Consensus 87 v~~a~~~ 93 (158)
|++++..
T Consensus 85 V~~a~~~ 91 (104)
T 1wex_A 85 FNYSTSK 91 (104)
T ss_dssp EEECSSS
T ss_pred EEEccCc
Confidence 9999854
No 102
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=8.1e-21 Score=120.91 Aligned_cols=80 Identities=33% Similarity=0.551 Sum_probs=73.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
...+..+|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|+.|++.||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3455689999999999999999999999999999998754 6899999999999999999999999999999999
Q ss_pred eeecCC
Q psy7051 89 MARYGR 94 (158)
Q Consensus 89 ~a~~~~ 94 (158)
+++...
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 998543
No 103
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.7e-21 Score=118.59 Aligned_cols=80 Identities=28% Similarity=0.412 Sum_probs=72.5
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHh-CCcccCCce
Q psy7051 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM-DGRMLDGRE 84 (158)
Q Consensus 6 p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l-~g~~i~g~~ 84 (158)
.++......+|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|+.|++.| ++..|.|+.
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 3444566789999999999999999999999999999999764 689999999999999999988 999999999
Q ss_pred EEEEeee
Q psy7051 85 LRVQMAR 91 (158)
Q Consensus 85 i~v~~a~ 91 (158)
|.|++++
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999975
No 104
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-20 Score=120.66 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=71.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhC--CcccCCceEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMD--GRMLDGRELR 86 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--g~~i~g~~i~ 86 (158)
..++..+|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|+.|++.|+ +..|.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456689999999999999999999999999999988764 6899999999999999999774 6789999999
Q ss_pred EEeeecCC
Q psy7051 87 VQMARYGR 94 (158)
Q Consensus 87 v~~a~~~~ 94 (158)
|.+++...
T Consensus 85 V~~a~~~~ 92 (101)
T 2cq1_A 85 IQYSNHKE 92 (101)
T ss_dssp EEECSCSS
T ss_pred EEEcCccc
Confidence 99998543
No 105
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.8e-21 Score=125.31 Aligned_cols=80 Identities=13% Similarity=0.202 Sum_probs=72.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCC--cccCCceEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG--RMLDGRELR 86 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~i~g~~i~ 86 (158)
..++..+|||+|||+.+++++|+++|++||.|+.|.|+.+ +|||||+|++.++|++|++.|++ ..|.|+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4456689999999999999999999999999999999875 68999999999999999998874 689999999
Q ss_pred EEeeecCC
Q psy7051 87 VQMARYGR 94 (158)
Q Consensus 87 v~~a~~~~ 94 (158)
|.+++...
T Consensus 101 V~~a~~k~ 108 (119)
T 2ad9_A 101 IQFSNHKE 108 (119)
T ss_dssp EEECSSSS
T ss_pred EEEccCCC
Confidence 99998543
No 106
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.5e-22 Score=130.49 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=73.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
....+|||+|||+.+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|+.||+ ||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 455899999999999999999999999999886566666689999999999999999999998 9999999999999998
Q ss_pred e
Q psy7051 91 R 91 (158)
Q Consensus 91 ~ 91 (158)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 6
No 107
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=118.02 Aligned_cols=77 Identities=26% Similarity=0.488 Sum_probs=70.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
..+..+|||+|||..+++++|+++|++||.|..|.++. +||||+|.+.++|+.|++.||+..|.|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568899999999999999999999999999999963 4999999999999999999999999999999999
Q ss_pred eecCC
Q psy7051 90 ARYGR 94 (158)
Q Consensus 90 a~~~~ 94 (158)
++...
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98543
No 108
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.85 E-value=8.2e-21 Score=126.25 Aligned_cols=83 Identities=19% Similarity=0.377 Sum_probs=73.9
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHH----HHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCC
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLR----RVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDG 82 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g 82 (158)
++..++..+|||+|||+.+++++|+ ++|++||.|..|.+.. ++..+|||||+|.+.++|+.|++.|||..|.|
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 3445667899999999999999876 6999999999987753 56789999999999999999999999999999
Q ss_pred ceEEEEeeec
Q psy7051 83 RELRVQMARY 92 (158)
Q Consensus 83 ~~i~v~~a~~ 92 (158)
+.|.|.+++.
T Consensus 100 r~l~V~~a~~ 109 (127)
T 2a3j_A 100 NPLVITFSET 109 (127)
T ss_dssp SCCEEEECCC
T ss_pred CEEEEEEccC
Confidence 9999999974
No 109
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.85 E-value=2.4e-21 Score=140.90 Aligned_cols=80 Identities=26% Similarity=0.393 Sum_probs=75.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcC--ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCG--EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
..++|||+||++.+++++|+++|++|| .|+.|.|+.++.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q psy7051 90 AR 91 (158)
Q Consensus 90 a~ 91 (158)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 110
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.85 E-value=8.2e-21 Score=123.16 Aligned_cols=76 Identities=28% Similarity=0.511 Sum_probs=70.0
Q ss_pred CCcEEEEeCCCCC-CCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 12 GMVSLKVDNLTYR-TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 12 ~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
...+|||+|||+. +++++|+++|++||.|..|.+ .++||||+|.+.++|+.|++.||+..|+|+.|.|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3479999999999 999999999999999999988 3689999999999999999999999999999999999
Q ss_pred ecCCC
Q psy7051 91 RYGRP 95 (158)
Q Consensus 91 ~~~~~ 95 (158)
+..+.
T Consensus 98 ~~~~~ 102 (110)
T 1wf1_A 98 GEPKP 102 (110)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 85443
No 111
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-21 Score=118.86 Aligned_cols=76 Identities=32% Similarity=0.592 Sum_probs=72.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
.+|||+|||..+++++|+++|++||+|..|.++.++.++.++|||||+|.+.++|+.|++.++ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 369999999999999999999999999999999998889999999999999999999999998 9999999999886
No 112
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=121.87 Aligned_cols=78 Identities=18% Similarity=0.381 Sum_probs=72.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
....+|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|+.|++.|||..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 34579999999999999999999999999999999876 689999999999999999999999999999999999
Q ss_pred ecCC
Q psy7051 91 RYGR 94 (158)
Q Consensus 91 ~~~~ 94 (158)
+...
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8544
No 113
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.85 E-value=8.8e-22 Score=123.23 Aligned_cols=80 Identities=28% Similarity=0.513 Sum_probs=73.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeeecC
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMARYG 93 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~~~ 93 (158)
.+|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.+ |+.|++.|||..|.|+.|.|++|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999888999999999999999 99999999999999999999999754
Q ss_pred C
Q psy7051 94 R 94 (158)
Q Consensus 94 ~ 94 (158)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 114
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.6e-21 Score=121.09 Aligned_cols=79 Identities=24% Similarity=0.412 Sum_probs=70.6
Q ss_pred CCCCCcEEEEeCCCC-CCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEE
Q psy7051 9 RIEGMVSLKVDNLTY-RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRV 87 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v 87 (158)
..++..+|||+|||+ .+++++|+++|++||.|..|.+. +|||||+|.+.++|+.|++.||+..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999998 99999999999999999999883 679999999999999999999999999999999
Q ss_pred EeeecCCC
Q psy7051 88 QMARYGRP 95 (158)
Q Consensus 88 ~~a~~~~~ 95 (158)
++++....
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99985543
No 115
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=123.17 Aligned_cols=81 Identities=21% Similarity=0.369 Sum_probs=75.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCccc--------C
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRML--------D 81 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i--------~ 81 (158)
..+..+|||+|||..+++++|+++|++||.|..|.|+.+. ++..+|||||+|.+.++|+.|++.|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456899999999999999999999999999999999998 889999999999999999999999999999 5
Q ss_pred CceEEEEeee
Q psy7051 82 GRELRVQMAR 91 (158)
Q Consensus 82 g~~i~v~~a~ 91 (158)
++.|.|.|++
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 7889999997
No 116
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.8e-20 Score=118.39 Aligned_cols=77 Identities=30% Similarity=0.519 Sum_probs=70.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhc--CceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEE
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERC--GEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRV 87 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~--G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v 87 (158)
..+..+|||+|||+.+++++|+++|++| |.|..|.++ ++||||+|.+.++|+.|++.||+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 899998874 569999999999999999999999999999999
Q ss_pred EeeecCC
Q psy7051 88 QMARYGR 94 (158)
Q Consensus 88 ~~a~~~~ 94 (158)
.+++...
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9998543
No 117
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.1e-21 Score=126.01 Aligned_cols=81 Identities=21% Similarity=0.281 Sum_probs=75.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCce-EEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEV-GDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i-~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
..+..+|||+|||+.+++++|+++|++||.| ..|.|+.+. ++..+|||||+|.+.++|+.||+. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3456899999999999999999999999999 889999998 899999999999999999999976 9999999999999
Q ss_pred eeec
Q psy7051 89 MARY 92 (158)
Q Consensus 89 ~a~~ 92 (158)
++..
T Consensus 90 ~a~~ 93 (114)
T 2cpy_A 90 VVTL 93 (114)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9874
No 118
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.85 E-value=3.7e-21 Score=126.46 Aligned_cols=79 Identities=20% Similarity=0.263 Sum_probs=74.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCc---eEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEE
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGE---VGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRV 87 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~---i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v 87 (158)
....+|||+|||+.+++++|+++|++||. |..|.|+.+.. ++++|||||+|.+.++|+.||+ ||+..|+|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45688999999999999999999999998 89999998875 8899999999999999999998 9999999999999
Q ss_pred Eeee
Q psy7051 88 QMAR 91 (158)
Q Consensus 88 ~~a~ 91 (158)
.++.
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9986
No 119
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=8.3e-21 Score=120.47 Aligned_cols=79 Identities=27% Similarity=0.368 Sum_probs=70.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
.+...+|||+|||..+++++|+++|++||.|. +.++.+ ..+|||||+|.+.++|+.|++.|||..|.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34468999999999999999999999999996 556543 4679999999999999999999999999999999999
Q ss_pred eecC
Q psy7051 90 ARYG 93 (158)
Q Consensus 90 a~~~ 93 (158)
++..
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9854
No 120
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.85 E-value=7.2e-21 Score=117.50 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=68.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
..-|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|+.|++.||+..|.|+.|.|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46799999999999999999999999999999865 47999999999999999999999999999999999984
No 121
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.85 E-value=8.9e-21 Score=132.91 Aligned_cols=82 Identities=29% Similarity=0.432 Sum_probs=77.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
.++.++|||+|||..+++++|+++|++||.|..|.|+.+. ++..+|||||+|.+.++|+.|++.||+..|.|+.|+|++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3446899999999999999999999999999999999988 888999999999999999999999999999999999999
Q ss_pred eec
Q psy7051 90 ARY 92 (158)
Q Consensus 90 a~~ 92 (158)
+..
T Consensus 164 a~~ 166 (177)
T 2f3j_A 164 VAS 166 (177)
T ss_dssp ESS
T ss_pred ecC
Confidence 874
No 122
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.85 E-value=7.7e-21 Score=121.39 Aligned_cols=76 Identities=36% Similarity=0.612 Sum_probs=71.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeeecC
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMARYG 93 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~~~ 93 (158)
++|||+|||..+++++|+++|++||+|..|.++.+ .+|||||+|.+.++|+.|++.||+..|.|+.|.|.+++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 5789999999999999999999999999999999999854
Q ss_pred C
Q psy7051 94 R 94 (158)
Q Consensus 94 ~ 94 (158)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 123
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.84 E-value=4.3e-21 Score=121.60 Aligned_cols=83 Identities=30% Similarity=0.512 Sum_probs=73.5
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHH----HHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCc
Q psy7051 8 PRIEGMVSLKVDNLTYRTTPDDLR----RVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGR 83 (158)
Q Consensus 8 ~~~~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~ 83 (158)
+..++..+|||+|||..+++++|+ ++|++||.|..|.++. ++..+|||||+|.+.++|+.|++.|||..|.|+
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 345667899999999999999999 9999999999998863 456789999999999999999999999999999
Q ss_pred eEEEEeeecC
Q psy7051 84 ELRVQMARYG 93 (158)
Q Consensus 84 ~i~v~~a~~~ 93 (158)
.|.|.+++..
T Consensus 80 ~l~v~~a~~~ 89 (97)
T 1nu4_A 80 PMRIQYAKTD 89 (97)
T ss_dssp ECEEEECSSC
T ss_pred EEEEEEccCC
Confidence 9999999854
No 124
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.84 E-value=5e-21 Score=128.69 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=74.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCc---eEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEE
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGE---VGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRV 87 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~---i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v 87 (158)
....+|||+|||+.+|+++|+++|++||. |..|.|+.++. ++++|||||+|.+.++|+.||+ ||+..|+|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 45689999999999999999999999999 88999999876 9999999999999999999998 9999999999999
Q ss_pred Eeee
Q psy7051 88 QMAR 91 (158)
Q Consensus 88 ~~a~ 91 (158)
.++.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 9875
No 125
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-22 Score=133.30 Aligned_cols=85 Identities=26% Similarity=0.321 Sum_probs=78.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEE--------EEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccC
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD--------IYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLD 81 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~ 81 (158)
..+..+|||+|||..+++++|+++|++||.|.. |.|+.++.++..+|||||+|.+.++|+.|++.||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345688999999999999999999999999998 889988888999999999999999999999999999999
Q ss_pred CceEEEEeeecCC
Q psy7051 82 GRELRVQMARYGR 94 (158)
Q Consensus 82 g~~i~v~~a~~~~ 94 (158)
|+.|.|.+++...
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999998543
No 126
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.84 E-value=1.1e-20 Score=122.29 Aligned_cols=77 Identities=22% Similarity=0.387 Sum_probs=71.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
..+..+|||+|||..+++++|+++|++||.|..|.++ +|||||+|.+.++|+.|++.|||..|.|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999886 58999999999999999999999999999999999
Q ss_pred eecCC
Q psy7051 90 ARYGR 94 (158)
Q Consensus 90 a~~~~ 94 (158)
++...
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 98543
No 127
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=118.81 Aligned_cols=76 Identities=29% Similarity=0.433 Sum_probs=67.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCc-eEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCC-cccCCceEEEE
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGE-VGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG-RMLDGRELRVQ 88 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~-i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g-~~i~g~~i~v~ 88 (158)
++..+|||+|||..+++++|+++|++||. |..+.+. .+|||||+|.+.++|+.|++.||+ ..|.|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45688999999999999999999999999 6555552 368999999999999999999999 99999999999
Q ss_pred eeecC
Q psy7051 89 MARYG 93 (158)
Q Consensus 89 ~a~~~ 93 (158)
+++..
T Consensus 79 ~a~~~ 83 (93)
T 2cqh_A 79 YSVSK 83 (93)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 99854
No 128
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.84 E-value=1.9e-20 Score=134.63 Aligned_cols=86 Identities=33% Similarity=0.430 Sum_probs=77.0
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
.....+..+|||+|||+.+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..+.|+.|.
T Consensus 9 ~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~ 88 (213)
T 4f02_A 9 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR 88 (213)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccc
Confidence 33345678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeec
Q psy7051 87 VQMARY 92 (158)
Q Consensus 87 v~~a~~ 92 (158)
|.++..
T Consensus 89 ~~~~~~ 94 (213)
T 4f02_A 89 IMWSQR 94 (213)
T ss_dssp EEECCC
T ss_pred cccccc
Confidence 998763
No 129
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-21 Score=124.21 Aligned_cols=81 Identities=22% Similarity=0.282 Sum_probs=73.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
....+|||+|||..+++++|+++|++||.|.. .++.+..++.++|||||+|.+.++|+.||+ ||+..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35689999999999999999999999999877 566666678889999999999999999998 9999999999999999
Q ss_pred ecC
Q psy7051 91 RYG 93 (158)
Q Consensus 91 ~~~ 93 (158)
+..
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 743
No 130
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.84 E-value=4.4e-20 Score=117.23 Aligned_cols=75 Identities=24% Similarity=0.402 Sum_probs=69.8
Q ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 10 IEGMVSLKVDNLTY-RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 10 ~~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
..+..+|||+|||. .+++++|+++|++||.|..|.+. +|||||+|.+.++|+.|++.|||..|.|+.|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45568999999998 99999999999999999999883 6899999999999999999999999999999999
Q ss_pred eeec
Q psy7051 89 MARY 92 (158)
Q Consensus 89 ~a~~ 92 (158)
+++.
T Consensus 91 ~a~~ 94 (97)
T 2xnq_A 91 VSSS 94 (97)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 9874
No 131
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.84 E-value=3.7e-21 Score=116.35 Aligned_cols=75 Identities=24% Similarity=0.414 Sum_probs=71.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 15 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
+|||+|||..+++++|+++|++||+|..|.++.++.++.++|||||+|.+.++|+.|++ +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999998889999999999999999999997 5899999999999875
No 132
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.83 E-value=6.7e-21 Score=123.08 Aligned_cols=80 Identities=19% Similarity=0.312 Sum_probs=74.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCc---eEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGE---VGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~---i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
.....+|||+|||+.+++++|+++|+.||. |..|.|+.+.. +.++|||||+|.+.++|+.||+ ||+..|+|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 455689999999999999999999999988 89999999876 8999999999999999999998 999999999999
Q ss_pred EEeee
Q psy7051 87 VQMAR 91 (158)
Q Consensus 87 v~~a~ 91 (158)
|.++.
T Consensus 86 V~~a~ 90 (107)
T 2lmi_A 86 VYEIN 90 (107)
T ss_dssp CEECC
T ss_pred EEECC
Confidence 99886
No 133
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.83 E-value=5.5e-20 Score=120.05 Aligned_cols=78 Identities=28% Similarity=0.415 Sum_probs=72.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
+..+|||+|||..+++++|.++|++||.|..|.++.+ +..+|||||+|.+.++|+.|++.|||..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4579999999999999999999999999999999865 3458999999999999999999999999999999999987
Q ss_pred c
Q psy7051 92 Y 92 (158)
Q Consensus 92 ~ 92 (158)
.
T Consensus 84 ~ 84 (115)
T 3lqv_A 84 A 84 (115)
T ss_dssp H
T ss_pred C
Confidence 4
No 134
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.83 E-value=9.2e-21 Score=116.42 Aligned_cols=72 Identities=24% Similarity=0.480 Sum_probs=66.8
Q ss_pred cEEEEeCCCCCC------CHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCc-eEE
Q psy7051 14 VSLKVDNLTYRT------TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGR-ELR 86 (158)
Q Consensus 14 ~~l~V~nl~~~~------~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~-~i~ 86 (158)
.+|||+|||..+ ++++|+++|++||.|..|.++ ..++.++|||||+|.+.++|+.|++.|||..|.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 779999999999999999987 35788999999999999999999999999999999 887
Q ss_pred E
Q psy7051 87 V 87 (158)
Q Consensus 87 v 87 (158)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 135
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.1e-20 Score=121.56 Aligned_cols=75 Identities=20% Similarity=0.319 Sum_probs=69.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
..++|||+|||..+++++|+++|++||.|..|.|+. .++||||+|.+.++|+.|++.|||..|.|+.|.|+|++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 357999999999999999999999999999998864 36899999999999999999999999999999999997
Q ss_pred c
Q psy7051 92 Y 92 (158)
Q Consensus 92 ~ 92 (158)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 136
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-20 Score=121.56 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=70.0
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCC--cccCCceEE
Q psy7051 10 IEGMVSLKVDNLTYR-TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG--RMLDGRELR 86 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~i~g~~i~ 86 (158)
.++..+|||+|||+. +++++|+++|++||+|..|.|+.. +|||||+|.+.++|+.|++.|++ ..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445689999999998 999999999999999999998643 68999999999999999998864 569999999
Q ss_pred EEeeecCC
Q psy7051 87 VQMARYGR 94 (158)
Q Consensus 87 v~~a~~~~ 94 (158)
|.+++...
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997443
No 137
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.83 E-value=1.5e-20 Score=120.19 Aligned_cols=84 Identities=25% Similarity=0.428 Sum_probs=76.4
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 7 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
|.......+|||+|||..+++++|+++|++||.|..|.++.+. ++..+|||||+|.+.++|+.|++ ++..|+|+.|.
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 3 PEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp CCCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 3344456899999999999999999999999999999999998 89999999999999999999997 99999999999
Q ss_pred EEeeecC
Q psy7051 87 VQMARYG 93 (158)
Q Consensus 87 v~~a~~~ 93 (158)
|.++...
T Consensus 80 v~~a~~~ 86 (102)
T 2xs2_A 80 LGPAIRK 86 (102)
T ss_dssp EEEEEEC
T ss_pred EEECCcC
Confidence 9998743
No 138
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=7.8e-20 Score=115.30 Aligned_cols=78 Identities=24% Similarity=0.277 Sum_probs=68.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
.....+|||+|||..+++++|+++|++||.|..| +.+..++. ||||+|.+.++|+.|++ ||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 44544554 99999999999999998 999999999999998
Q ss_pred eecC
Q psy7051 90 ARYG 93 (158)
Q Consensus 90 a~~~ 93 (158)
+...
T Consensus 79 a~~~ 82 (94)
T 2e5g_A 79 REQK 82 (94)
T ss_dssp SCCS
T ss_pred CCcC
Confidence 7643
No 139
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.82 E-value=2.8e-20 Score=123.37 Aligned_cols=80 Identities=23% Similarity=0.279 Sum_probs=72.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceE--EEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVG--DIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
......+|||+|||+.+++++|+++|++| .|. .|.|+.++. ++++|||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 33456889999999999999999999999 677 899999876 9999999999999999999997 578999999999
Q ss_pred EEeee
Q psy7051 87 VQMAR 91 (158)
Q Consensus 87 v~~a~ 91 (158)
|..+.
T Consensus 115 V~~a~ 119 (126)
T 2hgm_A 115 VFKSS 119 (126)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98875
No 140
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.82 E-value=4.2e-21 Score=129.45 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
....+|||+|||+.+++++|+++|++|| |+.|.|+.++. ++++|||||+|.+.++|+.|| .+|+..|.|+.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4457899999999999999999999999 77999999975 899999999999999999999 78999999999999998
Q ss_pred ecC
Q psy7051 91 RYG 93 (158)
Q Consensus 91 ~~~ 93 (158)
...
T Consensus 121 ~~~ 123 (139)
T 2hgn_A 121 STT 123 (139)
T ss_dssp CCS
T ss_pred CCC
Confidence 744
No 141
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.82 E-value=7.4e-20 Score=125.87 Aligned_cols=81 Identities=23% Similarity=0.339 Sum_probs=71.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCC--ceEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDG--RELR 86 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g--~~i~ 86 (158)
......+|||+||++.+++++|+++|++||+|..|.|.... ..|||||+|.+.++|+.|++.|||..|.| +.|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 33445789999999999999999999999999999986442 46899999999999999999999999965 9999
Q ss_pred EEeeecC
Q psy7051 87 VQMARYG 93 (158)
Q Consensus 87 v~~a~~~ 93 (158)
|+|++..
T Consensus 118 V~~Ak~~ 124 (164)
T 1sjr_A 118 IDFSKLT 124 (164)
T ss_dssp EEECSSS
T ss_pred EEEecCC
Confidence 9999854
No 142
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.4e-19 Score=113.69 Aligned_cols=78 Identities=26% Similarity=0.350 Sum_probs=69.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
..+..+|||+|| .+++++|+++|++||.|..|.|. ..+|||||+|.+.++|+.||+.||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999996 89999999999999999999884 2478999999999999999999999999999999999
Q ss_pred eecCCC
Q psy7051 90 ARYGRP 95 (158)
Q Consensus 90 a~~~~~ 95 (158)
++....
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 985443
No 143
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=2.5e-20 Score=117.87 Aligned_cols=78 Identities=28% Similarity=0.491 Sum_probs=70.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
..+..+|||+|||..+++++|+++|++||.|..+ ..++..+|||||+|.+.++|+.|++.|||..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999988766 23677899999999999999999999999999999999999
Q ss_pred eec
Q psy7051 90 ARY 92 (158)
Q Consensus 90 a~~ 92 (158)
+..
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 974
No 144
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.7e-19 Score=123.87 Aligned_cols=83 Identities=31% Similarity=0.467 Sum_probs=78.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
...+..+|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|+.|++.|||..|+|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 44556899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eee
Q psy7051 89 MAR 91 (158)
Q Consensus 89 ~a~ 91 (158)
||+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 145
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=9.4e-20 Score=124.28 Aligned_cols=80 Identities=34% Similarity=0.534 Sum_probs=73.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
...+..+|||+|||+.+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|+.|++.|||..|.|+.|.|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3455689999999999999999999999999999999876 47899999999999999999999999999999999
Q ss_pred eeecC
Q psy7051 89 MARYG 93 (158)
Q Consensus 89 ~a~~~ 93 (158)
+++..
T Consensus 144 ~a~~~ 148 (150)
T 2i2y_A 144 LSNGE 148 (150)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99743
No 146
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.9e-20 Score=118.11 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=69.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeeec
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMARY 92 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~~ 92 (158)
..+|||+|||..+++++|+++|++||.|..|.++. .+|||||+|.+.++|+.|++.|||..|+|+.|.|.+++.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 57999999999999999999999999999999873 468999999999999999999999999999999999863
No 147
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=9.5e-20 Score=115.20 Aligned_cols=79 Identities=22% Similarity=0.255 Sum_probs=71.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEE-EEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDI-YIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v-~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
....+|||+|||+.+++++|+++|++||.|..| .++.++.++ .|||+|.+.++|+.|++.|||..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 445889999999999999999999999999999 587776443 499999999999999999999999999999999
Q ss_pred eecC
Q psy7051 90 ARYG 93 (158)
Q Consensus 90 a~~~ 93 (158)
+...
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9743
No 148
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.82 E-value=9.5e-21 Score=128.27 Aligned_cols=87 Identities=29% Similarity=0.368 Sum_probs=73.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEE--EccC---CCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCce
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIY--IPRD---RFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRE 84 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~--~~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~ 84 (158)
..+..+|||+|||+.+++++|+++|++||.|..|. ++.+ ..++..+|||||+|.+.++|+.|++.|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45568999999999999999999999999887641 1111 236778999999999999999999999999999999
Q ss_pred EEEEeeecCCCC
Q psy7051 85 LRVQMARYGRPP 96 (158)
Q Consensus 85 i~v~~a~~~~~~ 96 (158)
|.|.+++...++
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999865443
No 149
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.2e-20 Score=120.63 Aligned_cols=80 Identities=15% Similarity=0.196 Sum_probs=72.3
Q ss_pred cEEEEeCC----CCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcC----HHH----HHHHHH--HhCCcc
Q psy7051 14 VSLKVDNL----TYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD----KRD----AEDALD--AMDGRM 79 (158)
Q Consensus 14 ~~l~V~nl----~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~----~~~----a~~a~~--~l~g~~ 79 (158)
+.|||+|| |+.+++++|+++|+.||+|..|.++.|+.||.++|||||+|.+ +++ |..|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 9999999999999999999999999999999999999999996 433 788888 789999
Q ss_pred cCCceEEEEeeecC
Q psy7051 80 LDGRELRVQMARYG 93 (158)
Q Consensus 80 i~g~~i~v~~a~~~ 93 (158)
|+|+.|+|.+.+.+
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987643
No 150
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=118.08 Aligned_cols=77 Identities=21% Similarity=0.409 Sum_probs=69.2
Q ss_pred CCCCcEEEE--eCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCccc-----CC
Q psy7051 10 IEGMVSLKV--DNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRML-----DG 82 (158)
Q Consensus 10 ~~~~~~l~V--~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i-----~g 82 (158)
.++..+||| +||++.+++++|+++|++||+|..|.|+.+ +|||||+|.+.++|++|++.|||.+| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345688999 779999999999999999999999988643 68999999999999999999999988 68
Q ss_pred ceEEEEeeec
Q psy7051 83 RELRVQMARY 92 (158)
Q Consensus 83 ~~i~v~~a~~ 92 (158)
..|.|.+++.
T Consensus 96 ~~l~v~~a~~ 105 (114)
T 2cq2_A 96 ITLYLNFVEK 105 (114)
T ss_dssp EECEEEEESC
T ss_pred cEEEEEeccc
Confidence 8999999873
No 151
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.81 E-value=1.3e-19 Score=127.88 Aligned_cols=92 Identities=32% Similarity=0.487 Sum_probs=78.7
Q ss_pred CCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCccc
Q psy7051 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRML 80 (158)
Q Consensus 1 ~~~~~p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i 80 (158)
|+-...+...+...+|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.|++. ++..|
T Consensus 1 ms~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~ 79 (196)
T 1l3k_A 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV 79 (196)
T ss_dssp -------CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE
T ss_pred CCcccCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE
Confidence 44445555667789999999999999999999999999999999999988999999999999999999999975 99999
Q ss_pred CCceEEEEeeecC
Q psy7051 81 DGRELRVQMARYG 93 (158)
Q Consensus 81 ~g~~i~v~~a~~~ 93 (158)
.|+.|.|.++...
T Consensus 80 ~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 80 DGRVVEPKRAVSR 92 (196)
T ss_dssp TTEECEEEECCC-
T ss_pred CCEEeeeecccCc
Confidence 9999999998643
No 152
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.81 E-value=1.6e-19 Score=124.92 Aligned_cols=80 Identities=24% Similarity=0.409 Sum_probs=76.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
....+|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|+.|++.|||..|+|+.|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 44688999999999999999999999999999999999889999999999999999999999999999999999999987
No 153
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.81 E-value=3.3e-19 Score=127.57 Aligned_cols=84 Identities=25% Similarity=0.402 Sum_probs=79.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
...+|||+|||..+++++|+++|++||.|..|.++.+..++.++|||||+|.+.++|..|++.|||..|.|+.|.|.++.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred cCCC
Q psy7051 92 YGRP 95 (158)
Q Consensus 92 ~~~~ 95 (158)
....
T Consensus 204 ~~~~ 207 (216)
T 2qfj_A 204 TPPM 207 (216)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 6543
No 154
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=4.4e-20 Score=122.06 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=71.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCce----EEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEV----GDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i----~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
+...+|||+|||+.+++++|+++|++||.| ..|.|+.+. +++++|||||+|.+.++|+.||+. |+..|.++.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 445899999999999999999999999875 688888884 899999999999999999999975 99999999999
Q ss_pred EEeee
Q psy7051 87 VQMAR 91 (158)
Q Consensus 87 v~~a~ 91 (158)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98875
No 155
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.80 E-value=4.3e-19 Score=121.92 Aligned_cols=80 Identities=31% Similarity=0.574 Sum_probs=76.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeeec
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMARY 92 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~~ 92 (158)
.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|+.|++.||+..|.|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47899999999999999999999999999999999988999999999999999999999999999999999999999874
No 156
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.80 E-value=3.8e-19 Score=122.52 Aligned_cols=87 Identities=32% Similarity=0.527 Sum_probs=79.5
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCC-
Q psy7051 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDG- 82 (158)
Q Consensus 4 ~~p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g- 82 (158)
..|........+|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|..|++.|||..|.|
T Consensus 80 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 80 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 159 (168)
T ss_dssp CCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred cCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC
Confidence 3455555667899999999999999999999999999999999998889999999999999999999999999999988
Q ss_pred -ceEEEEee
Q psy7051 83 -RELRVQMA 90 (158)
Q Consensus 83 -~~i~v~~a 90 (158)
+.|.|.+|
T Consensus 160 ~~~l~V~~A 168 (168)
T 1b7f_A 160 SQPLSVRLA 168 (168)
T ss_dssp SSCCEEEEC
T ss_pred CeEEEEEeC
Confidence 99999886
No 157
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=111.03 Aligned_cols=74 Identities=31% Similarity=0.425 Sum_probs=65.3
Q ss_pred CCCcE-EEEeCCCCCCCHHH----HHHHhhhcC-ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCce
Q psy7051 11 EGMVS-LKVDNLTYRTTPDD----LRRVFERCG-EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRE 84 (158)
Q Consensus 11 ~~~~~-l~V~nl~~~~~~~~----l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~ 84 (158)
++..| |||+|||..+++++ |.++|++|| +|..| ++ |+|||+|.+.++|+.|++.|||..|.|+.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 44555 99999999999988 558999995 99887 23 89999999999999999999999999999
Q ss_pred EEEEeeecCC
Q psy7051 85 LRVQMARYGR 94 (158)
Q Consensus 85 i~v~~a~~~~ 94 (158)
|+|.+|+...
T Consensus 76 i~v~~A~~~s 85 (96)
T 2diu_A 76 IIVSFTPKNR 85 (96)
T ss_dssp CEEESSCCSC
T ss_pred EEEEecCCCc
Confidence 9999998543
No 158
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.80 E-value=4.3e-19 Score=122.25 Aligned_cols=82 Identities=30% Similarity=0.440 Sum_probs=77.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
+..+|||+|||..+++++|+++|++||+|..|.++.++.++.++|||||+|.+.++|+.|++.|++..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35789999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred cC
Q psy7051 92 YG 93 (158)
Q Consensus 92 ~~ 93 (158)
..
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.80 E-value=6e-19 Score=124.64 Aligned_cols=83 Identities=23% Similarity=0.404 Sum_probs=78.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
.+..+|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|+.|++.|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecC
Q psy7051 91 RYG 93 (158)
Q Consensus 91 ~~~ 93 (158)
+..
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 854
No 160
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.80 E-value=5.1e-19 Score=117.53 Aligned_cols=77 Identities=26% Similarity=0.421 Sum_probs=69.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccE-EEEEEcCHHHHHHHHHHhCCcccCC--ceEEEE
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGF-AFVRFFDKRDAEDALDAMDGRMLDG--RELRVQ 88 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~g~~i~g--~~i~v~ 88 (158)
....|||+||++.+++++|+++|++||+|..|.++.. .+|+ |||+|.+.++|+.|++.|||..|.| +.|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3467889999999999999999999999999988754 2577 9999999999999999999999988 899999
Q ss_pred eeecC
Q psy7051 89 MARYG 93 (158)
Q Consensus 89 ~a~~~ 93 (158)
|++..
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 99843
No 161
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.80 E-value=5e-19 Score=121.59 Aligned_cols=87 Identities=29% Similarity=0.457 Sum_probs=78.0
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCc
Q psy7051 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGR 83 (158)
Q Consensus 4 ~~p~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~ 83 (158)
..|........+|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|+.|++.|||..|.|+
T Consensus 79 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 79 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred cCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 34444455668999999999999999999999999999999999888899999999999999999999999999999996
Q ss_pred e--EEEEee
Q psy7051 84 E--LRVQMA 90 (158)
Q Consensus 84 ~--i~v~~a 90 (158)
. |.|.||
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 5 888875
No 162
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.79 E-value=4.6e-19 Score=125.03 Aligned_cols=82 Identities=27% Similarity=0.361 Sum_probs=75.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
...+|||+|||..+++++|+++|++||.|..|.++.+..++.++|||||+|.+.++|+.|++. ++..|+|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 457999999999999999999999999999999999988999999999999999999999975 8999999999999997
Q ss_pred cCC
Q psy7051 92 YGR 94 (158)
Q Consensus 92 ~~~ 94 (158)
...
T Consensus 182 ~k~ 184 (196)
T 1l3k_A 182 SKQ 184 (196)
T ss_dssp ---
T ss_pred Chh
Confidence 543
No 163
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.79 E-value=2.7e-19 Score=111.49 Aligned_cols=75 Identities=19% Similarity=0.375 Sum_probs=68.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
...+|||+|||+.+++++|+++|++| .|..|.+. ..+|||||+|.+.++|+.|++.|||..|.|+.|.|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 34789999999999999999999999 99999884 368999999999999999999999999999999999987
Q ss_pred cC
Q psy7051 92 YG 93 (158)
Q Consensus 92 ~~ 93 (158)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 164
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=1.3e-18 Score=115.00 Aligned_cols=74 Identities=30% Similarity=0.345 Sum_probs=66.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccE-EEEEEcCHHHHHHHHHHhCCcccCC--ceEEEEee
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGF-AFVRFFDKRDAEDALDAMDGRMLDG--RELRVQMA 90 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~g~~i~g--~~i~v~~a 90 (158)
..|||+||++.+++++|+++|++||.|..|.|+.. .|| |||+|.+.++|+.|++.|||..|.| +.|.|++|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999988642 276 9999999999999999999999987 68999999
Q ss_pred ecC
Q psy7051 91 RYG 93 (158)
Q Consensus 91 ~~~ 93 (158)
+..
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 844
No 165
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.78 E-value=1e-18 Score=125.05 Aligned_cols=77 Identities=19% Similarity=0.284 Sum_probs=71.3
Q ss_pred CCcEEEEeCCC-CCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 12 GMVSLKVDNLT-YRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 12 ~~~~l~V~nl~-~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
+..+|||+||+ ..+++++|.++|++||.|..|.++.+. +|||||+|.+.++|+.||+.|||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45789999999 899999999999999999999998753 689999999999999999999999999999999999
Q ss_pred ecC
Q psy7051 91 RYG 93 (158)
Q Consensus 91 ~~~ 93 (158)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 743
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.78 E-value=1.1e-18 Score=125.40 Aligned_cols=78 Identities=24% Similarity=0.393 Sum_probs=72.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeeec
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMARY 92 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~~ 92 (158)
..+|||+|||..+++++|+++|++||.|..|.|+.+. +..+|||||+|.+.++|+.||+.|||..|+|+.|.|.+++.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 4689999999999999999999999999999998874 34689999999999999999999999999999999999863
No 167
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=113.80 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=64.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCC---CCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEE
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFT---RESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRV 87 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v 87 (158)
....+|||+|||+.+++++|+++|++||.|. +.++.+..+ +.++|||||+|.+.++|+.||+.|+ .++|..|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4458899999999999999999999999999 888887766 6899999999999999999999883 255555555
Q ss_pred Ee
Q psy7051 88 QM 89 (158)
Q Consensus 88 ~~ 89 (158)
..
T Consensus 83 ~~ 84 (114)
T 2dnl_A 83 VS 84 (114)
T ss_dssp EC
T ss_pred cc
Confidence 43
No 168
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.78 E-value=1.4e-18 Score=114.51 Aligned_cols=76 Identities=26% Similarity=0.381 Sum_probs=68.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
.+..+|||+|| .+++++|+++|++||.|..|.+. ..+|||||+|.+.++|+.|++.|||..|.|+.|.|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45689999996 69999999999999999999885 24789999999999999999999999999999999999
Q ss_pred ecCC
Q psy7051 91 RYGR 94 (158)
Q Consensus 91 ~~~~ 94 (158)
+...
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8543
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.77 E-value=1.6e-18 Score=123.97 Aligned_cols=79 Identities=30% Similarity=0.499 Sum_probs=72.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
..+|||+|||..+++++|+++|++||.|..|.|+.+..++..+|||||+|.+.++|+.|++.||+..|.|+.|.|.++.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4789999999999999999999999999999999998889999999999999999999999999999999999998765
No 170
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.77 E-value=8e-19 Score=120.85 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=75.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
...+|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|+.|++ +++..|.|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 34689999999999999999999999999999999998889999999999999999999997 89999999999999987
Q ss_pred c
Q psy7051 92 Y 92 (158)
Q Consensus 92 ~ 92 (158)
.
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.77 E-value=1.9e-18 Score=107.13 Aligned_cols=70 Identities=27% Similarity=0.525 Sum_probs=65.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhc----C-------ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCccc
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERC----G-------EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRML 80 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~----G-------~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i 80 (158)
+..+|||+|||..+++++|+++|++| | .|..+.+..+ +|||||+|.+.++|+.|+ .||+..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45899999999999999999999999 8 8999988755 689999999999999999 9999999
Q ss_pred CCceEEEE
Q psy7051 81 DGRELRVQ 88 (158)
Q Consensus 81 ~g~~i~v~ 88 (158)
.|+.|.|+
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99999986
No 172
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.9e-18 Score=117.64 Aligned_cols=79 Identities=27% Similarity=0.433 Sum_probs=73.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeeecC
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMARYG 93 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~~~ 93 (158)
.+|||+|||..+++++|+++|++||.|..|.++.++ ++..+|||||+|.+.++|+.|++.|||..|.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999886 5678999999999999999999999999999999999998744
No 173
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.77 E-value=2.3e-18 Score=107.60 Aligned_cols=73 Identities=30% Similarity=0.468 Sum_probs=62.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcc--cCCceEEEE
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRM--LDGRELRVQ 88 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~--i~g~~i~v~ 88 (158)
.+..+|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++ |++.. +.|..|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 45589999999999999999999999999999999875 58999999999999883 45554 468999999
Q ss_pred eeec
Q psy7051 89 MARY 92 (158)
Q Consensus 89 ~a~~ 92 (158)
++..
T Consensus 80 ~a~~ 83 (89)
T 3d2w_A 80 NAEP 83 (89)
T ss_dssp ECC-
T ss_pred EcCC
Confidence 8874
No 174
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.3e-19 Score=109.20 Aligned_cols=76 Identities=30% Similarity=0.486 Sum_probs=64.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
+..+|||+|||..+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|++|+. ....+.|..|.|.+++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 4589999999999999999999999999999998765 57899999999999976432 1335589999999887
Q ss_pred cCC
Q psy7051 92 YGR 94 (158)
Q Consensus 92 ~~~ 94 (158)
...
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 175
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=4.7e-18 Score=117.62 Aligned_cols=79 Identities=27% Similarity=0.352 Sum_probs=73.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccC---CceEEEE
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLD---GRELRVQ 88 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~---g~~i~v~ 88 (158)
...+|||+|||..+++++|+++|++||.|..|.++.+. ++.++|||||+|.+.++|+.|++.|||..+. ++.|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 45799999999999999999999999999999998886 6889999999999999999999999998775 4899999
Q ss_pred eee
Q psy7051 89 MAR 91 (158)
Q Consensus 89 ~a~ 91 (158)
||.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 176
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.76 E-value=8e-18 Score=108.24 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=71.0
Q ss_pred CCcEEEEeCCCC-----CCCHHHHHHHhhhcCceEEEEEccCCCC-CCcccEEEEEEcCHHHHHHHHHHhCCcccCCceE
Q psy7051 12 GMVSLKVDNLTY-----RTTPDDLRRVFERCGEVGDIYIPRDRFT-RESRGFAFVRFFDKRDAEDALDAMDGRMLDGREL 85 (158)
Q Consensus 12 ~~~~l~V~nl~~-----~~~~~~l~~~f~~~G~i~~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i 85 (158)
+..+|+|.||.. ..++++|+++|++||.|..|.|+.++.+ +..+|||||+|.+.++|+.|++.|||..|.|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 457899999963 2378999999999999999999887643 5789999999999999999999999999999999
Q ss_pred EEEeee
Q psy7051 86 RVQMAR 91 (158)
Q Consensus 86 ~v~~a~ 91 (158)
.|.++.
T Consensus 87 ~v~~a~ 92 (105)
T 2pe8_A 87 KACFYN 92 (105)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999986
No 177
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.76 E-value=3.1e-18 Score=124.23 Aligned_cols=84 Identities=27% Similarity=0.401 Sum_probs=75.7
Q ss_pred CCCCCCCCCcEEEEeCCCC-CCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCc
Q psy7051 5 RPPPRIEGMVSLKVDNLTY-RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGR 83 (158)
Q Consensus 5 ~p~~~~~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~ 83 (158)
.|+...++..+|||+|||. .+++++|+++|++||.|..|.|+.+. +|||||+|.+.++|+.|++.|||..|.|+
T Consensus 26 ~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 100 (229)
T 2adc_A 26 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGK 100 (229)
T ss_dssp CGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSS
T ss_pred CCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3444456678999999999 99999999999999999999998774 68999999999999999999999999999
Q ss_pred eEEEEeeecC
Q psy7051 84 ELRVQMARYG 93 (158)
Q Consensus 84 ~i~v~~a~~~ 93 (158)
.|.|.+++..
T Consensus 101 ~l~v~~a~~~ 110 (229)
T 2adc_A 101 PIRITLSKHQ 110 (229)
T ss_dssp BCEEECCSCC
T ss_pred EEEEEEecCc
Confidence 9999998744
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.75 E-value=9.9e-18 Score=115.98 Aligned_cols=82 Identities=26% Similarity=0.426 Sum_probs=73.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCC--CcccEEEEEEcCHHHHHHHHHHhCCcccC---CceEE
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTR--ESRGFAFVRFFDKRDAEDALDAMDGRMLD---GRELR 86 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~--~~~g~afV~f~~~~~a~~a~~~l~g~~i~---g~~i~ 86 (158)
...+|||+|||+.+++++|+++|++||+|..|.++.+..++ ..+|||||+|.+.++|+.|++.|++..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 35789999999999999999999999999999999988776 78999999999999999999999998875 57788
Q ss_pred EEeeecC
Q psy7051 87 VQMARYG 93 (158)
Q Consensus 87 v~~a~~~ 93 (158)
+.++...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8777643
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.75 E-value=1.2e-17 Score=124.21 Aligned_cols=83 Identities=29% Similarity=0.499 Sum_probs=74.9
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHH----HHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCc
Q psy7051 8 PRIEGMVSLKVDNLTYRTTPDDLR----RVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGR 83 (158)
Q Consensus 8 ~~~~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~ 83 (158)
+...+..+|||+|||..+++++|+ ++|++||.|..|.++. ++..+|||||+|.+.++|+.|++.|||..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 345667899999999999999966 8999999999998875 677889999999999999999999999999999
Q ss_pred eEEEEeeecC
Q psy7051 84 ELRVQMARYG 93 (158)
Q Consensus 84 ~i~v~~a~~~ 93 (158)
.|.|.+++..
T Consensus 81 ~l~v~~a~~~ 90 (282)
T 3pgw_A 81 PMRIQYAKTD 90 (282)
T ss_pred EEEEEEeccC
Confidence 9999999643
No 180
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.74 E-value=6.3e-18 Score=123.13 Aligned_cols=79 Identities=27% Similarity=0.331 Sum_probs=70.4
Q ss_pred CCCCcEEEEeCCCCCC---------CHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCccc
Q psy7051 10 IEGMVSLKVDNLTYRT---------TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRML 80 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~---------~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i 80 (158)
.....+|||+||+..+ ++++|.++|++||+|..|.|+.+ +|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3456899999999998 79999999999999999999764 78999999999999999999999999
Q ss_pred ------------CCceEEEEeeecCC
Q psy7051 81 ------------DGRELRVQMARYGR 94 (158)
Q Consensus 81 ------------~g~~i~v~~a~~~~ 94 (158)
.|+.|.|.||+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998543
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.74 E-value=1.6e-17 Score=115.25 Aligned_cols=77 Identities=29% Similarity=0.509 Sum_probs=70.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEe
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQM 89 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~ 89 (158)
.....+|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|..|++.|||..|.|+.|.|.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3456899999999999999999999999998766 34777899999999999999999999999999999999999
Q ss_pred ee
Q psy7051 90 AR 91 (158)
Q Consensus 90 a~ 91 (158)
++
T Consensus 171 a~ 172 (175)
T 1fje_B 171 TG 172 (175)
T ss_dssp CS
T ss_pred cC
Confidence 87
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=9.7e-18 Score=115.38 Aligned_cols=78 Identities=29% Similarity=0.507 Sum_probs=71.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
+..+|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|+.|++ ++..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 35789999999999999999999999999999999998899999999999999999999997 4678899999888764
No 183
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.73 E-value=3e-17 Score=122.14 Aligned_cols=76 Identities=22% Similarity=0.293 Sum_probs=70.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccC-CceEEEEe
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLD-GRELRVQM 89 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~-g~~i~v~~ 89 (158)
.+..+|||+|||..+++++|+++|++||.|..|.|+.+. +|||||+|.+.++|+.|++.|||..|. |+.|+|.|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 345889999999999999999999999999999998653 589999999999999999999999999 99999999
Q ss_pred ee
Q psy7051 90 AR 91 (158)
Q Consensus 90 a~ 91 (158)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 184
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.73 E-value=2e-17 Score=117.28 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=70.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
..+|||+|||..+++++|+++|++||.|..|.|+.+. ++..+|||||+|.+.++|+.|++.+ +..|+|+.|.|.+++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 3789999999999999999999999999999998876 5889999999999999999999755 569999999999875
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.71 E-value=4e-17 Score=121.99 Aligned_cols=81 Identities=30% Similarity=0.377 Sum_probs=74.3
Q ss_pred CCCcEEEEeCCCCC-CCHHHHHHHhhhcCceEEEEEccCCC-CCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 11 EGMVSLKVDNLTYR-TTPDDLRRVFERCGEVGDIYIPRDRF-TRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 11 ~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~v~~~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
....+|||+|||.. +++++|.++|++||.|..|.++.+.. ++.++|||||+|.+.++|..|+ .|||..|.|+.|.|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 44589999999999 99999999999999999999998875 5889999999999999999999 999999999999999
Q ss_pred eeec
Q psy7051 89 MARY 92 (158)
Q Consensus 89 ~a~~ 92 (158)
+++.
T Consensus 287 ~a~~ 290 (292)
T 2ghp_A 287 LADK 290 (292)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9973
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.71 E-value=9e-17 Score=119.65 Aligned_cols=82 Identities=23% Similarity=0.334 Sum_probs=77.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
...+|||+|||..+++++|.++|++||.|..|.++.+..++.++|||||+|.+.++|..|++.|+|..|.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 34789999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred cC
Q psy7051 92 YG 93 (158)
Q Consensus 92 ~~ 93 (158)
..
T Consensus 174 ~~ 175 (284)
T 3smz_A 174 AG 175 (284)
T ss_dssp GG
T ss_pred CC
Confidence 53
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.71 E-value=6.7e-17 Score=120.37 Aligned_cols=83 Identities=25% Similarity=0.274 Sum_probs=76.7
Q ss_pred CCCCcEEEEeCCCCCC-CHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 10 IEGMVSLKVDNLTYRT-TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~-~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
.....+|||+|||..+ ++++|.++|++||.|..|.|+.+. ++.++|+|||+|.+.++|..|++.|||..|.|+.|.|.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3456899999999995 999999999999999999998886 78899999999999999999999999999999999999
Q ss_pred eeecC
Q psy7051 89 MARYG 93 (158)
Q Consensus 89 ~a~~~ 93 (158)
++...
T Consensus 260 ~a~~~ 264 (284)
T 3smz_A 260 FCAPG 264 (284)
T ss_dssp ECCSS
T ss_pred EecCC
Confidence 99744
No 188
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.70 E-value=5.2e-17 Score=116.15 Aligned_cols=78 Identities=12% Similarity=0.171 Sum_probs=68.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCce--EEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCc----e
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEV--GDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGR----E 84 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i--~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~----~ 84 (158)
++..+|||+|||+.+++++|+++|++||.| +.|.++.+. +..+|+|||+|.+.++|..||..|||..|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 345789999999999999999999999999 889888764 44569999999999999999999999999886 4
Q ss_pred EEEEee
Q psy7051 85 LRVQMA 90 (158)
Q Consensus 85 i~v~~a 90 (158)
+.|.++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 666654
No 189
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.69 E-value=1e-16 Score=118.43 Aligned_cols=75 Identities=40% Similarity=0.664 Sum_probs=69.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
....+|||+|||+.+++++|.++|++||.|..|.+..+ +|||||+|.+.++|+.|+..|||..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 44579999999999999999999999999999998654 689999999999999999999999999999999998
Q ss_pred e
Q psy7051 91 R 91 (158)
Q Consensus 91 ~ 91 (158)
.
T Consensus 94 ~ 94 (261)
T 3sde_A 94 T 94 (261)
T ss_dssp C
T ss_pred c
Confidence 6
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.69 E-value=4.7e-17 Score=115.16 Aligned_cols=76 Identities=28% Similarity=0.430 Sum_probs=71.1
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 13 MVSLKVDNLTY-RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 13 ~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
..+|||+|||+ .+++++|+++|++||.|..|.++.+. +|||||+|.+.++|+.|++.|||..|.|+.|.|.+++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 47899999999 99999999999999999999998774 6899999999999999999999999999999999987
Q ss_pred cC
Q psy7051 92 YG 93 (158)
Q Consensus 92 ~~ 93 (158)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 191
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.9e-16 Score=101.35 Aligned_cols=80 Identities=25% Similarity=0.411 Sum_probs=68.0
Q ss_pred CCCCCcEEEEeCCCCCCC-----------HHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q psy7051 9 RIEGMVSLKVDNLTYRTT-----------PDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~-----------~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g 77 (158)
...+..+|+|.||..... +++|+++|++||.|..|.| .+. .++|||||+|.+.++|+.|++.|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345568999999954332 5799999999999999966 433 2689999999999999999999999
Q ss_pred cccCCceEEEEeeec
Q psy7051 78 RMLDGRELRVQMARY 92 (158)
Q Consensus 78 ~~i~g~~i~v~~a~~ 92 (158)
..|.|+.|.|.++..
T Consensus 87 ~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 87 RWFGGRQITAQAWDG 101 (112)
T ss_dssp CEETTEECEEEECCS
T ss_pred CEECCcEEEEEEeCC
Confidence 999999999999874
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=112.58 Aligned_cols=77 Identities=21% Similarity=0.314 Sum_probs=70.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcC-ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccC-CceEEEE
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCG-EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLD-GRELRVQ 88 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~-g~~i~v~ 88 (158)
++..+|||+|||..+++++|+++|++|| .|..|.++.+. +|+|||+|.+.++|+.|++.|||..|. |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4468999999999999999999999999 99999986542 689999999999999999999999999 9999999
Q ss_pred eeec
Q psy7051 89 MARY 92 (158)
Q Consensus 89 ~a~~ 92 (158)
|++.
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9873
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.69 E-value=1.9e-16 Score=114.81 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=70.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcC-ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccC-CceEEEE
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCG-EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLD-GRELRVQ 88 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~-g~~i~v~ 88 (158)
.+..+|||+|||..+++++|+++|++|| .|..|.++.+ .+|||||+|.+.++|+.|++.|||..|. |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3468999999999999999999999999 9999998653 2689999999999999999999999999 9999999
Q ss_pred eeec
Q psy7051 89 MARY 92 (158)
Q Consensus 89 ~a~~ 92 (158)
|++.
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9873
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.68 E-value=2.8e-17 Score=114.01 Aligned_cols=83 Identities=22% Similarity=0.270 Sum_probs=71.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
...+..+|||+|||..+++++|+++|..||.|..+ ++.+..++..+|||||+|.+.++|+.|+ .||+..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 34556899999999999999999999999977652 3344456778999999999999999999 599999999999999
Q ss_pred eeecC
Q psy7051 89 MARYG 93 (158)
Q Consensus 89 ~a~~~ 93 (158)
++...
T Consensus 87 ~~~~~ 91 (175)
T 1fje_B 87 KPKGR 91 (175)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98743
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.68 E-value=2.3e-16 Score=101.36 Aligned_cols=80 Identities=24% Similarity=0.278 Sum_probs=68.9
Q ss_pred CCcEEEEeCC--CCCCC--------HHHHHHHhhhcCceEEEEEccCCCC--CCcccEEEEEEcCHHHHHHHHHHhCCcc
Q psy7051 12 GMVSLKVDNL--TYRTT--------PDDLRRVFERCGEVGDIYIPRDRFT--RESRGFAFVRFFDKRDAEDALDAMDGRM 79 (158)
Q Consensus 12 ~~~~l~V~nl--~~~~~--------~~~l~~~f~~~G~i~~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~g~~ 79 (158)
+..+|.|.|+ +..+. +++|+++|++||.|..|.|+.+..+ +..+|+|||+|.+.++|++|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4577999998 33332 3689999999999999999887654 3578999999999999999999999999
Q ss_pred cCCceEEEEeee
Q psy7051 80 LDGRELRVQMAR 91 (158)
Q Consensus 80 i~g~~i~v~~a~ 91 (158)
|+|+.|.|.++.
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999999975
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.66 E-value=5.1e-17 Score=104.32 Aligned_cols=72 Identities=21% Similarity=0.432 Sum_probs=63.2
Q ss_pred EeCCCCCCCHHHHHHHh------------hhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceE
Q psy7051 18 VDNLTYRTTPDDLRRVF------------ERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGREL 85 (158)
Q Consensus 18 V~nl~~~~~~~~l~~~f------------~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i 85 (158)
+.||+..+++++|+++| ++||.|..|.|+.+. +++++|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777777777666 999999999998876 47889999999999999999999999999999999
Q ss_pred EEEee
Q psy7051 86 RVQMA 90 (158)
Q Consensus 86 ~v~~a 90 (158)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.65 E-value=4.2e-16 Score=115.07 Aligned_cols=80 Identities=25% Similarity=0.251 Sum_probs=72.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCc-ccC---CceEEEE
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGR-MLD---GRELRVQ 88 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~-~i~---g~~i~v~ 88 (158)
..+|||+|||..+++++|+++|++||.|..|.++.+ .++.++|||||+|.+.++|..|+..||+. .+. ++.|.|.
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 478999999999999999999999999999999988 48899999999999999999999999554 444 8999999
Q ss_pred eeecC
Q psy7051 89 MARYG 93 (158)
Q Consensus 89 ~a~~~ 93 (158)
++...
T Consensus 175 ~~~~~ 179 (261)
T 3sde_A 175 PMEQF 179 (261)
T ss_dssp ECCCE
T ss_pred ecccc
Confidence 98743
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.65 E-value=5e-16 Score=116.05 Aligned_cols=81 Identities=22% Similarity=0.345 Sum_probs=70.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcC-ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEee
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCG-EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMA 90 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a 90 (158)
...+|||+|||..+++++|.++|.+|| .|..|.++.+.. +..+|||||+|.+.++|+.|++.|||..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 357899999999999999999999999 999999988764 778999999999999999999999999999999999998
Q ss_pred ecC
Q psy7051 91 RYG 93 (158)
Q Consensus 91 ~~~ 93 (158)
...
T Consensus 195 ~~~ 197 (292)
T 2ghp_A 195 NPL 197 (292)
T ss_dssp CCC
T ss_pred CCC
Confidence 743
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=1e-15 Score=105.70 Aligned_cols=75 Identities=25% Similarity=0.456 Sum_probs=66.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhc----C-------ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCccc
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERC----G-------EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRML 80 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~----G-------~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i 80 (158)
+..+|||+|||..+++++|+++|++| | .|..+.+..+ +|||||+|.+.++|+.|+ .||+..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45799999999999999999999999 6 6777766443 689999999999999999 8999999
Q ss_pred CCceEEEEeeecC
Q psy7051 81 DGRELRVQMARYG 93 (158)
Q Consensus 81 ~g~~i~v~~a~~~ 93 (158)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987643
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.65 E-value=6.5e-16 Score=101.21 Aligned_cols=80 Identities=18% Similarity=0.278 Sum_probs=69.4
Q ss_pred CCcEEEEeCCCC--CC---CHHHHHHHhhhcCceEEEEEccCCC----CCCcccEEEEEEcCHHHHHHHHHHhCCcccCC
Q psy7051 12 GMVSLKVDNLTY--RT---TPDDLRRVFERCGEVGDIYIPRDRF----TRESRGFAFVRFFDKRDAEDALDAMDGRMLDG 82 (158)
Q Consensus 12 ~~~~l~V~nl~~--~~---~~~~l~~~f~~~G~i~~v~~~~~~~----~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g 82 (158)
+..+|+|.|+-. .+ .+++|+++|++||.|..|.|+.+.. ++..+|++||+|.+.++|.+|++.|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457899999932 22 3689999999999999999988754 34567999999999999999999999999999
Q ss_pred ceEEEEeee
Q psy7051 83 RELRVQMAR 91 (158)
Q Consensus 83 ~~i~v~~a~ 91 (158)
+.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999975
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6e-15 Score=93.83 Aligned_cols=75 Identities=23% Similarity=0.203 Sum_probs=62.2
Q ss_pred CcEEEEeCCC-------CCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceE
Q psy7051 13 MVSLKVDNLT-------YRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGREL 85 (158)
Q Consensus 13 ~~~l~V~nl~-------~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i 85 (158)
..+|.|.-.. ..+++++|+++|++||+|..|.|+. ..+|||||+|.+.++|+.|++.++ .+.++.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 4567666543 4589999999999999999999873 468999999999999999998744 4689999
Q ss_pred EEEeeecCC
Q psy7051 86 RVQMARYGR 94 (158)
Q Consensus 86 ~v~~a~~~~ 94 (158)
.|.|++...
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999987543
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.63 E-value=2e-15 Score=106.41 Aligned_cols=74 Identities=24% Similarity=0.442 Sum_probs=65.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhc----C-------ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccC
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERC----G-------EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLD 81 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~----G-------~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~ 81 (158)
..+|||+|||..+++++|.++|++| | .|..+.+. ..+|||||+|.+.++|+.|+ .|||..|.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 4789999999999999999999999 4 56666553 34789999999999999999 89999999
Q ss_pred CceEEEEeeecC
Q psy7051 82 GRELRVQMARYG 93 (158)
Q Consensus 82 g~~i~v~~a~~~ 93 (158)
|+.|.|.++...
T Consensus 77 g~~i~v~~~~~~ 88 (198)
T 2yh0_A 77 GQSLKIRRPHDY 88 (198)
T ss_dssp TEEEEEECCCCC
T ss_pred CceEEEeCCCCC
Confidence 999999988744
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.61 E-value=2e-15 Score=115.26 Aligned_cols=75 Identities=24% Similarity=0.469 Sum_probs=64.2
Q ss_pred CCCCcEEEEeC--CCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccC---Cc-
Q psy7051 10 IEGMVSLKVDN--LTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLD---GR- 83 (158)
Q Consensus 10 ~~~~~~l~V~n--l~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~---g~- 83 (158)
.++..+|||+| |+..+++++|+++|++||+|..|.++. .+|||||+|.+.++|++|++.|||.++. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 35668999999 578999999999999999999987754 3689999999999999999999999873 44
Q ss_pred -eEEEEee
Q psy7051 84 -ELRVQMA 90 (158)
Q Consensus 84 -~i~v~~a 90 (158)
.|.|.|+
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 5677775
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.55 E-value=4.5e-14 Score=91.87 Aligned_cols=76 Identities=20% Similarity=0.354 Sum_probs=64.5
Q ss_pred CCcEEEEeCCCCCC----------CHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccC
Q psy7051 12 GMVSLKVDNLTYRT----------TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLD 81 (158)
Q Consensus 12 ~~~~l~V~nl~~~~----------~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~ 81 (158)
+..+|.|.|+=... .+++|+++|++||.|..|.|..+. .+|+|||+|.+.++|+.|++.|||..|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35678999983321 235789999999999999987653 4799999999999999999999999999
Q ss_pred CceEEEEeee
Q psy7051 82 GRELRVQMAR 91 (158)
Q Consensus 82 g~~i~v~~a~ 91 (158)
|+.|.|.++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999975
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.4e-13 Score=88.86 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=67.1
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcC-HHHHHHHHHHhC--CcccCCceE
Q psy7051 10 IEGMVSLKVDNLTYR-TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD-KRDAEDALDAMD--GRMLDGREL 85 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~-~~~a~~a~~~l~--g~~i~g~~i 85 (158)
.+....|+|+||+.. ++.++|+++|++||+|.+|.++.+.. .|||.|.+ .++|..|++.|| +..|+|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 455688999999999 99999999999999999999988753 59999999 899999999995 678999999
Q ss_pred EEEeee
Q psy7051 86 RVQMAR 91 (158)
Q Consensus 86 ~v~~a~ 91 (158)
+++...
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 988743
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-12 Score=80.70 Aligned_cols=71 Identities=23% Similarity=0.316 Sum_probs=60.2
Q ss_pred cEEEEeCCCC----CCCH----HHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceE
Q psy7051 14 VSLKVDNLTY----RTTP----DDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGREL 85 (158)
Q Consensus 14 ~~l~V~nl~~----~~~~----~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i 85 (158)
.||+|.-++. ++-. .+|.+.|.+||+|..++++.+. +||+|.+.++|.+|++ |||..|+|+.|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 5688876652 3323 5789999999999999998773 8999999999999997 99999999999
Q ss_pred EEEeeecC
Q psy7051 86 RVQMARYG 93 (158)
Q Consensus 86 ~v~~a~~~ 93 (158)
+|++++..
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99998743
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.3e-11 Score=76.55 Aligned_cols=70 Identities=20% Similarity=0.316 Sum_probs=59.2
Q ss_pred CcEEEEeCCCCC-----C-CH---HHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCc
Q psy7051 13 MVSLKVDNLTYR-----T-TP---DDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGR 83 (158)
Q Consensus 13 ~~~l~V~nl~~~-----~-~~---~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~ 83 (158)
..||+|.-++.. + .+ .+|.+.|.+||+|..++++.+. +||+|.+.++|.+||+ |||..|+|+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 367999877643 2 21 5689999999999999998773 9999999999999997 999999999
Q ss_pred eEEEEeee
Q psy7051 84 ELRVQMAR 91 (158)
Q Consensus 84 ~i~v~~a~ 91 (158)
.|+|.+-.
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99998753
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.24 E-value=3.7e-11 Score=86.46 Aligned_cols=67 Identities=19% Similarity=0.313 Sum_probs=59.7
Q ss_pred CCHHHHHHHhhhcCceEEEEEccCC----CCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 25 TTPDDLRRVFERCGEVGDIYIPRDR----FTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 25 ~~~~~l~~~f~~~G~i~~v~~~~~~----~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
-.+++|.+.|++||.|..|.++.+. .++..+|++||+|.+.++|++|++.|||..|+|+.|.|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3567899999999999999998543 345889999999999999999999999999999999999975
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.95 E-value=6.4e-09 Score=65.85 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=65.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhc-----CceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERC-----GEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~-----G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
...+|-+-|||..++...|..+++++ |.|..|.+..+. +-|+|+|.+...|.+|.-.|+|.+|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35778889999999999999999999 999999998874 5799999999999998889999999999999
Q ss_pred EEe
Q psy7051 87 VQM 89 (158)
Q Consensus 87 v~~ 89 (158)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 864
No 210
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.49 E-value=1.8e-06 Score=53.35 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=63.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCC--cccEEEEEEcCHHHHHHHHHHhCCcccCCc-----eEE
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRE--SRGFAFVRFFDKRDAEDALDAMDGRMLDGR-----ELR 86 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~--~~g~afV~f~~~~~a~~a~~~l~g~~i~g~-----~i~ 86 (158)
++|.|.+||+.+||+++.+.+..+..+....++..+.+.+ ...-|||.|.+.+++....+.++|..+.+. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5799999999999999999999998887777766554433 335799999999999999999999976332 346
Q ss_pred EEeeecC
Q psy7051 87 VQMARYG 93 (158)
Q Consensus 87 v~~a~~~ 93 (158)
|++|...
T Consensus 82 VE~AP~q 88 (91)
T 1uw4_A 82 VEFAPFQ 88 (91)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 7776543
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.47 E-value=4.7e-07 Score=56.98 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=62.6
Q ss_pred CCcEEEEeCCCCCC-C----HHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 12 GMVSLKVDNLTYRT-T----PDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 12 ~~~~l~V~nl~~~~-~----~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
..++|+|+||+..+ . .+.++++|..|+++..+.+...- .-..|.|.++++|.+|-..||+..|+|..|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 34789999998865 2 25789999999988887766542 3579999999999999999999999999999
Q ss_pred EEeee
Q psy7051 87 VQMAR 91 (158)
Q Consensus 87 v~~a~ 91 (158)
|.++.
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99987
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.33 E-value=2.8e-06 Score=52.67 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=46.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMD 76 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 76 (158)
.+.++| ++|+++...||.++|+.||.| .|.++.|. .|||.|.+++.|..|++.+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 356666 999999999999999999955 46676663 79999999999999998663
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=1.2e-05 Score=50.46 Aligned_cols=70 Identities=26% Similarity=0.251 Sum_probs=58.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhh---c--CceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEE
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFER---C--GEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELR 86 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~---~--G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~ 86 (158)
...+|.|.|||+.++++.|+-+|+. - |+|..++... +-|+|+|.+.+.|+.+|+. ..+.|++..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 3478999999999999999999987 2 4788887643 4699999999999999852 47889999999
Q ss_pred EEee
Q psy7051 87 VQMA 90 (158)
Q Consensus 87 v~~a 90 (158)
|...
T Consensus 78 V~P~ 81 (104)
T 2dhx_A 78 LRPA 81 (104)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 8653
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=98.23 E-value=3.4e-06 Score=52.46 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=46.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMD 76 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 76 (158)
..++| ++|+++...||.++|+.||.| .|.++.|. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999944 57777763 79999999999999998774
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.17 E-value=3.9e-06 Score=52.21 Aligned_cols=79 Identities=14% Similarity=0.091 Sum_probs=58.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCC--cccEEEEEEcCHHHHHHHHHHhCCcccCCc-----eEE
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRE--SRGFAFVRFFDKRDAEDALDAMDGRMLDGR-----ELR 86 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~--~~g~afV~f~~~~~a~~a~~~l~g~~i~g~-----~i~ 86 (158)
.+|.|..||+.+||+++.+.+..+-++....++..+.+.+ ...-|||.|.+.+++....+.++|..+.+. ...
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 4689999999999999988888765554444444333332 224699999999999999999999976332 356
Q ss_pred EEeeec
Q psy7051 87 VQMARY 92 (158)
Q Consensus 87 v~~a~~ 92 (158)
|++|..
T Consensus 90 VE~APy 95 (97)
T 2l08_A 90 VEFAPF 95 (97)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 777653
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.05 E-value=2.8e-05 Score=50.17 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=55.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCC-ceEEEEe
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDG-RELRVQM 89 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g-~~i~v~~ 89 (158)
...|.|-++|+. ....|...|++||+|....... ...+..|.|++..+|+.||. .||..|++ -.|-|..
T Consensus 24 ~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 24 DTWVTVFGFPQA-SASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 467888899988 4677889999999999887621 24699999999999999995 69999975 4556555
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.55 E-value=0.00018 Score=47.01 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=53.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEE-EEEccC------------CCCC-CcccEEEEEEcCHHHHHHHHHHhCCcc
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGD-IYIPRD------------RFTR-ESRGFAFVRFFDKRDAEDALDAMDGRM 79 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~-v~~~~~------------~~~~-~~~g~afV~f~~~~~a~~a~~~l~g~~ 79 (158)
.-|.|-++|+. ....+.+.|++||.|.+ +.+... +... ....+..|+|++..+|..||. .||..
T Consensus 8 ~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 45777799776 45567788999999866 222110 0000 024688999999999999995 69999
Q ss_pred cCCceEEEEee
Q psy7051 80 LDGRELRVQMA 90 (158)
Q Consensus 80 i~g~~i~v~~a 90 (158)
|+|.-|-|...
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99987777664
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.18 E-value=0.00025 Score=56.02 Aligned_cols=55 Identities=9% Similarity=0.205 Sum_probs=41.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHH
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 73 (158)
..+|+|. .+..+++.+|.++|++||+|..+.+-.+. .-||.|||.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4689996 79999999999999999999999886653 3699999999999987764
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.85 E-value=0.001 Score=44.55 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=28.3
Q ss_pred EEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcc
Q psy7051 42 DIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRM 79 (158)
Q Consensus 42 ~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 79 (158)
.+.|+.+. ...+|||||+|.+.++|+.|++.+++..
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 34555553 3578999999999999999998887643
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.72 E-value=0.00069 Score=45.15 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=36.0
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHHh-CCcccCCceEEEEeee
Q psy7051 51 TRESRGFAFVRFFDKRDAEDALDAM-DGRMLDGRELRVQMAR 91 (158)
Q Consensus 51 ~~~~~g~afV~f~~~~~a~~a~~~l-~g~~i~g~~i~v~~a~ 91 (158)
....+|+++|+|.+.++|+.|++.| ||..|.| .|.+.++.
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 3456899999999999999999999 9999999 99998875
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=96.36 E-value=0.018 Score=46.09 Aligned_cols=56 Identities=21% Similarity=0.238 Sum_probs=46.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g 77 (158)
...++|+ +|..+...+|.++|+.||.+ .|.++.+. .|||.|.+.+.|..+++.+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 3567776 99999999999999999954 56666552 799999999999999998854
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=93.50 E-value=0.41 Score=27.69 Aligned_cols=68 Identities=18% Similarity=0.314 Sum_probs=42.0
Q ss_pred EEEEeCC-CCCCCHHHHHHHhhhcC-----ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEE
Q psy7051 15 SLKVDNL-TYRTTPDDLRRVFERCG-----EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQ 88 (158)
Q Consensus 15 ~l~V~nl-~~~~~~~~l~~~f~~~G-----~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~ 88 (158)
+|+|..- -..+...+|..++..-+ .|-.+.+.. .|.||+... +.+..+++.|++..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 4555311 34566777777776544 456666633 378998865 45777888999999999999988
Q ss_pred eee
Q psy7051 89 MAR 91 (158)
Q Consensus 89 ~a~ 91 (158)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 223
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=84.97 E-value=2.6 Score=25.43 Aligned_cols=60 Identities=13% Similarity=0.204 Sum_probs=37.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhh----cC-ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCc
Q psy7051 10 IEGMVSLKVDNLTYRTTPDDLRRVFER----CG-EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGR 78 (158)
Q Consensus 10 ~~~~~~l~V~nl~~~~~~~~l~~~f~~----~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 78 (158)
...+..|++. .--|..+.+.+.. .| +|..+.++.. ..||.||++...++...+++.+.|.
T Consensus 9 d~~WYvv~~~----sG~E~~V~~~L~~~~~~~~l~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 9 AHMIFAVRTM----VGQEKNIAGLMASRAEKEQLDVYSILASES-----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CCCEEEEEEC----TTCHHHHHHHHHHHHHHTTCCEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred CCeEEEEEEE----CChHHHHHHHHHHHHHhcCCcEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 3334555552 2345555554442 23 4666666543 5899999999999888888776664
No 224
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=84.16 E-value=5.1 Score=24.21 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=46.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q psy7051 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77 (158)
Q Consensus 12 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g 77 (158)
...-|.|-|+|..+-..++.-.....|---.|..+. |-|.|.|.+.++..-|+.+|-+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHh
Confidence 345677889999999999888888888777777653 4699999999998888887643
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=72.10 E-value=20 Score=24.28 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=35.8
Q ss_pred cEEEEeCCCC-C--------CCHHHHHHHh--hhcCceEEEEEccCCCCCCcccEEEEEEcCHH-HHHHHH
Q psy7051 14 VSLKVDNLTY-R--------TTPDDLRRVF--ERCGEVGDIYIPRDRFTRESRGFAFVRFFDKR-DAEDAL 72 (158)
Q Consensus 14 ~~l~V~nl~~-~--------~~~~~l~~~f--~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~-~a~~a~ 72 (158)
.++.|-|++. . ...++|.+.| ..|.++.-..+ .++ ....|+|.|.|..-- -...|+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l-~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPL-WNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEE-ECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEec-ccC--CCCceeEEEEecCChHHHHHHH
Confidence 3566778887 2 3457899977 89987654433 332 225789999998543 344444
No 226
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=71.43 E-value=31 Score=26.77 Aligned_cols=9 Identities=0% Similarity=0.191 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy7051 65 KRDAEDALD 73 (158)
Q Consensus 65 ~~~a~~a~~ 73 (158)
.+++..++.
T Consensus 116 e~~L~~~F~ 124 (437)
T 3pgw_S 116 ESKLRREFE 124 (437)
T ss_pred HHHHHHHHH
Confidence 334444443
No 227
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=69.57 E-value=12 Score=20.59 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=40.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHH
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 74 (158)
.++.|.++.-..=...|+..+.. ..|..+.+-.. .+-+.|+|.+.++...+|+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 56888899877778889999999 88887777433 35678888866667777764
No 228
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=65.94 E-value=0.44 Score=31.69 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=16.9
Q ss_pred HHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEc
Q psy7051 28 DDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFF 63 (158)
Q Consensus 28 ~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~ 63 (158)
+|+.++|...|.|+.+.. .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 456677777777764432 3689999976
No 229
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=63.01 E-value=21 Score=21.17 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=38.9
Q ss_pred EEEeCCCCCCCHHHHHHHhhh-cC-ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q psy7051 16 LKVDNLTYRTTPDDLRRVFER-CG-EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75 (158)
Q Consensus 16 l~V~nl~~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 75 (158)
.|+-.+...++..+|++.+++ |+ .|..|..+.-+ .+ .--|||.+..-.+|......+
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~--~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RG--EKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TS--CEEEEEEECTTSCHHHHHHHS
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CC--ceEEEEEcCCCCcHHHHHHhh
Confidence 344456888999999999987 66 66666554332 12 235999999887777765543
No 230
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=62.07 E-value=16 Score=25.36 Aligned_cols=27 Identities=7% Similarity=0.068 Sum_probs=23.1
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCccc
Q psy7051 54 SRGFAFVRFFDKRDAEDALDAMDGRML 80 (158)
Q Consensus 54 ~~g~afV~f~~~~~a~~a~~~l~g~~i 80 (158)
.+||.|||=....++..||+.+.+...
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 579999999999999999988776543
No 231
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=58.00 E-value=36 Score=22.23 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=37.5
Q ss_pred EEEeCCCCCCCHHHHHHHhhh-cC-ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q psy7051 16 LKVDNLTYRTTPDDLRRVFER-CG-EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75 (158)
Q Consensus 16 l~V~nl~~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 75 (158)
.||--+...++..+|++.++. |+ .|..|..+.-+ .+ .--|||.+..-.+|......+
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g--~KKAyV~L~~~~daldvAnki 139 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRP-NG--TKKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECT-TS--CEEEEEEECTTCCHHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CC--ceEEEEEeCCCCcHHHHHHhh
Confidence 344456778899999988887 56 66666554332 12 224999998777766655443
No 232
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=57.83 E-value=38 Score=22.37 Aligned_cols=56 Identities=18% Similarity=0.247 Sum_probs=37.1
Q ss_pred EEeCCCCCCCHHHHHHHhhh-cC-ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q psy7051 17 KVDNLTYRTTPDDLRRVFER-CG-EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75 (158)
Q Consensus 17 ~V~nl~~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 75 (158)
||--+...++..+|++.++. |+ .|..|..+.-+ .| .--|||.+....+|......+
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p-~g--~KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI-TG--NKKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--CEEEEEEECSSSCHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CC--cEEEEEEcCCCCcHHHHHHhh
Confidence 34456778899999988887 56 66666554332 12 225999998777776655443
No 233
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=56.36 E-value=14 Score=22.79 Aligned_cols=35 Identities=11% Similarity=0.485 Sum_probs=26.4
Q ss_pred ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCc
Q psy7051 39 EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGR 78 (158)
Q Consensus 39 ~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 78 (158)
+|..+-.+.+ .+||-|||=....++..|++.+.+.
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 4666655433 5899999999999999999766544
No 234
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=56.34 E-value=24 Score=19.69 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=41.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcC----HHHHHHHHHH
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD----KRDAEDALDA 74 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~----~~~a~~a~~~ 74 (158)
..+...++.|.++.-..-...|+..+.....|..+.+-.. .+.+.|.|.. .+....+++.
T Consensus 6 ~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 69 (84)
T 1q8l_A 6 AGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEA 69 (84)
T ss_dssp SSCEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHH
T ss_pred cCceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 3344467889898777667779999999888888777433 3568888863 3455566654
No 235
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=55.06 E-value=28 Score=26.68 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=39.1
Q ss_pred EEEeCCCCCC----CHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCc
Q psy7051 16 LKVDNLTYRT----TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGR 83 (158)
Q Consensus 16 l~V~nl~~~~----~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~ 83 (158)
-+||||..-. ....+.++..+||+|..+.+. +.-+|...+++.++.++.. ++..+.++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~~-~~~~f~~r 78 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLIK-KGKDFSGR 78 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHTT-TTTTTBBC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHHh-CcHhhCCC
Confidence 3588876432 235677788899999888773 2357777889999988843 44444433
No 236
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=52.94 E-value=24 Score=18.69 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=37.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcC---HHHHHHHHHH
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD---KRDAEDALDA 74 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~---~~~a~~a~~~ 74 (158)
.++.|.++.-..-...|+..+.....|..+.+... .+-+.|+|.. .++...+++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 46778888776667889999999888877776443 3467888853 3445555543
No 237
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=49.12 E-value=39 Score=22.36 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=35.4
Q ss_pred EEeCCCCCCCHHHHHHHhhh-cC-ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHH
Q psy7051 17 KVDNLTYRTTPDDLRRVFER-CG-EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74 (158)
Q Consensus 17 ~V~nl~~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 74 (158)
||--+...++..+|++.++. |+ .|..|..+.-+ .+ .--|||.+..-.+|.+....
T Consensus 92 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g--~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 92 LVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP-DG--KKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp EEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECT-TS--SEEEEEEECTTSCHHHHHGG
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcC-CC--ceEEEEEcCCCCcHHHHHHh
Confidence 34456777888888888876 56 56666544332 12 23599999877776665543
No 238
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=48.73 E-value=20 Score=25.91 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=23.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEE
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDI 43 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v 43 (158)
..+.|+|||..++...|..++.. ..+..+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 45789999999999999999987 555443
No 239
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=47.97 E-value=40 Score=20.03 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=16.4
Q ss_pred cccEEEEEEcCHHHHHHHHH
Q psy7051 54 SRGFAFVRFFDKRDAEDALD 73 (158)
Q Consensus 54 ~~g~afV~f~~~~~a~~a~~ 73 (158)
......|+|.+.+.|.+++.
T Consensus 52 ~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp CSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHC
Confidence 34578999999999988764
No 240
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=47.57 E-value=32 Score=18.52 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=39.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEc----CHHHHHHHHHH
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFF----DKRDAEDALDA 74 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~----~~~~a~~a~~~ 74 (158)
.++.|.++.-..=...|+..+.....|..+.+-.. .+-+.|+|. +.++...+++.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 45778888776666788999999877877766443 356889885 44566666654
No 241
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=47.39 E-value=18 Score=21.46 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=24.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhhc
Q psy7051 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERC 37 (158)
Q Consensus 9 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~ 37 (158)
.......|.|.+.+..++.++.++|+..|
T Consensus 15 ~lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 15 TLNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp -CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred ccCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 44556789999999999999999999988
No 242
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=51.69 E-value=4.3 Score=25.22 Aligned_cols=62 Identities=10% Similarity=0.165 Sum_probs=36.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEE--EEEcCHHHHHHHHHHhCCcc
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAF--VRFFDKRDAEDALDAMDGRM 79 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~af--V~f~~~~~a~~a~~~l~g~~ 79 (158)
..||.|..+ .++++|..|..+.+ +..+.+......|+ ..|.. -.|.+.++|..|++.|....
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk-~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQ-PWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 355655444 35666777777775 34454443322222 23333 36889999999998886543
No 243
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=44.94 E-value=53 Score=21.27 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=26.0
Q ss_pred eEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCc
Q psy7051 40 VGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGR 78 (158)
Q Consensus 40 i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 78 (158)
|..+.++.. ..||.||++...++...++..+.|.
T Consensus 33 i~~v~vp~~-----fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSR-----VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecC-----CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 556666532 4799999999988888888777665
No 244
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=44.87 E-value=40 Score=18.91 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=42.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCccc
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRML 80 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i 80 (158)
.....|.|+-+....+.+.|...+...|--..|. .. +..-..-+--|.+.++|+.++..|...-+
T Consensus 7 ~~~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i~--~~---~~~yRV~vGpf~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 7 SGLYKVQIGAFKVKANADSLASNAEAKGFDSIVL--LK---DGLYKVQIGAFSSKDNADTLAARAKNAGF 71 (79)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHHHHHTCCEEEE--EE---TTEEEEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEEEcCCHHHHHHHHHHHHhCCCCeEEe--cC---CcEEEEEECCcCCHHHHHHHHHHHHHcCC
Confidence 3457899998887777777887777766433331 11 11112233368899999999988876444
No 245
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=44.05 E-value=12 Score=27.27 Aligned_cols=32 Identities=19% Similarity=0.082 Sum_probs=24.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEE
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYI 45 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~ 45 (158)
..+.|+|||..++...|..++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 35789999999999999999976545544433
No 246
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=41.10 E-value=37 Score=20.16 Aligned_cols=26 Identities=8% Similarity=0.171 Sum_probs=20.0
Q ss_pred ceEEEEEccCCCCCCcccEEEEEEcC
Q psy7051 39 EVGDIYIPRDRFTRESRGFAFVRFFD 64 (158)
Q Consensus 39 ~i~~v~~~~~~~~~~~~g~afV~f~~ 64 (158)
+|+.|.+..-...++.++||-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57777776555578889999999975
No 247
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=40.92 E-value=25 Score=28.91 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHhh----hcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q psy7051 21 LTYRTTPDDLRRVFE----RCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMD 76 (158)
Q Consensus 21 l~~~~~~~~l~~~f~----~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 76 (158)
.+...+--+|..+|- .+|-|+++.|...+. .....++++.|.+.++|..++..+-
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHHH
Confidence 344444457888873 467888887755432 2235578899999999988887653
No 248
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=39.37 E-value=65 Score=19.71 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHhh-hcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCceEEEEeee
Q psy7051 20 NLTYRTTPDDLRRVFE-RCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91 (158)
Q Consensus 20 nl~~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~i~v~~a~ 91 (158)
.++..+..++|..... .||.-..+....+ -..|-..+.+|..+|++.|+-. ...+.|+|-+..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~ 86 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVI 86 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEE
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEec
Confidence 5677888888877664 5888766665422 3789999999999999987654 233334444444
No 249
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=37.64 E-value=30 Score=24.56 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=21.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceE
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVG 41 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~ 41 (158)
..+.|+|||+.++...|..++.....+.
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~ 118 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIA 118 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcc
Confidence 3578999999999988888886543333
No 250
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=37.33 E-value=6.5 Score=22.72 Aligned_cols=66 Identities=11% Similarity=0.072 Sum_probs=41.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEE-EEcCHHHHHHHHHHhCCcccCC
Q psy7051 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV-RFFDKRDAEDALDAMDGRMLDG 82 (158)
Q Consensus 11 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV-~f~~~~~a~~a~~~l~g~~i~g 82 (158)
.....|.|+-+....+.+.|..-+...|--..|. .. + ..--.+| -|.+.++|+.++..|...-|.+
T Consensus 7 ~~~~~vQvGaF~~~~~A~~l~~~L~~~G~~a~i~--~~---~-~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~ 73 (81)
T 1uta_A 7 ERRWMVQCGSFRGAEQAETVRAQLAFEGFDSKIT--TN---N-GWNRVVIGPVKGKENADSTLNRLKMAGHTN 73 (81)
T ss_dssp CCBCCCBCCEESCHHHHHHHHHHHHHHTCCEEEE--EC---S-SSEEEEESSCBTTTHHHHHHHHHHHHCCSC
T ss_pred CccEEEEEEEcCCHHHHHHHHHHHHhCCCCeEEE--eC---C-cEEEEEECCcCCHHHHHHHHHHHHHcCCCc
Confidence 3456788888887777778888787777433332 11 1 1111333 5788899999888876544443
No 251
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=37.16 E-value=21 Score=21.64 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=15.9
Q ss_pred EeCCCCCCCHHHHHHHhhh-cCc
Q psy7051 18 VDNLTYRTTPDDLRRVFER-CGE 39 (158)
Q Consensus 18 V~nl~~~~~~~~l~~~f~~-~G~ 39 (158)
|.+|...+|-+||...|.+ .|+
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 4578889999998886544 453
No 252
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=37.09 E-value=22 Score=20.80 Aligned_cols=19 Identities=11% Similarity=0.155 Sum_probs=15.5
Q ss_pred EeCCCCCC-CHHHHHHHhhh
Q psy7051 18 VDNLTYRT-TPDDLRRVFER 36 (158)
Q Consensus 18 V~nl~~~~-~~~~l~~~f~~ 36 (158)
|-|||+++ ||.+|.++|.+
T Consensus 29 IPnLPpgVnTW~qI~el~qk 48 (81)
T 2ko4_A 29 IPNIPPNINTWQQVTALAQQ 48 (81)
T ss_dssp SSSCCTTTCBHHHHHHHHTT
T ss_pred CCCCCCCcchHHHHHHHHHc
Confidence 45888887 79999999865
No 253
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=36.83 E-value=33 Score=25.94 Aligned_cols=22 Identities=18% Similarity=0.077 Sum_probs=19.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhhh
Q psy7051 15 SLKVDNLTYRTTPDDLRRVFER 36 (158)
Q Consensus 15 ~l~V~nl~~~~~~~~l~~~f~~ 36 (158)
.+.|+|||..++..-|..+|..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988888874
No 254
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=36.44 E-value=65 Score=22.20 Aligned_cols=57 Identities=9% Similarity=0.068 Sum_probs=39.0
Q ss_pred CCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCc------ccCCc-eEEEE
Q psy7051 25 TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGR------MLDGR-ELRVQ 88 (158)
Q Consensus 25 ~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~------~i~g~-~i~v~ 88 (158)
+.+++|.+.+..|.++. +..+.-+-.-||++.+.++....|..|.|. .|+|. .|...
T Consensus 65 ~~~~~I~~Ei~aYnpLi-------P~~~~l~ATl~IE~~d~~er~~~L~~L~Gie~~v~l~v~~~~~V~ai 128 (194)
T 3fjv_A 65 FDEDGIQAELDAYLPLV-------PDGSNLKATLQIEYENETQRRAALARLVGIEDRVFLRVDDEAPVYAI 128 (194)
T ss_dssp CSHHHHHHHHHHHGGGC-------CCSSEEEEEEEECCSSHHHHHHHHHHTTTGGGSEEEEETTSCCEECE
T ss_pred CCHHHHHHHHHHhcccC-------CCCCcEEEEEEEEcCCHHHHHHHHHHhcCccceEEEEECCcceeeee
Confidence 35677777777776641 112323446799999999999999999986 35665 45543
No 255
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=36.44 E-value=24 Score=15.60 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=10.6
Q ss_pred CHHHHHHHhhhc
Q psy7051 26 TPDDLRRVFERC 37 (158)
Q Consensus 26 ~~~~l~~~f~~~ 37 (158)
++.+|.++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 788999999887
No 256
>4dqz_A Methyltransferase type 12; ligase-activating, bacterial PNKP; 2.30A {Clostridium thermocellum} PDB: 4drf_B 4e6n_B*
Probab=35.38 E-value=37 Score=23.83 Aligned_cols=60 Identities=20% Similarity=0.124 Sum_probs=34.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCc-eEEEEEccCC---CCCCcccEEEEEEcCHHHHHHHHHH
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGE-VGDIYIPRDR---FTRESRGFAFVRFFDKRDAEDALDA 74 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~-i~~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~ 74 (158)
-+|.|.-||..-.++.++.+|++.|- |.-..+..+. +.|.+ -|.-|+.....-...|+..
T Consensus 118 L~~~~p~lp~rgg~~l~~rLFePLGw~V~a~~~~ld~~fp~WG~S-ry~~l~L~g~~rladaL~h 181 (230)
T 4dqz_A 118 LKAKIMMLPCKGGEEIIYRLFEPLGYKVDVEGYMLDEKFPEWGKS-RYYTVSLEGEVRVRDLLNH 181 (230)
T ss_dssp EEEEEEEEECTTHHHHHHHHHGGGTCEEEEEEC-------------CEEEEEEEEEECHHHHHHH
T ss_pred eEEEeeeeecCCcHHHHHHhhccccceEeeeecccCccCcccCCc-cceEEEEeeeEEHHHHhhh
Confidence 56888888888788899999999994 4333343332 12322 3555666554445555543
No 257
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=34.86 E-value=28 Score=24.70 Aligned_cols=26 Identities=19% Similarity=0.075 Sum_probs=21.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhhhcCce
Q psy7051 15 SLKVDNLTYRTTPDDLRRVFERCGEV 40 (158)
Q Consensus 15 ~l~V~nl~~~~~~~~l~~~f~~~G~i 40 (158)
.+.|+|||..++...|..++.....+
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~ 122 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCV 122 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGC
T ss_pred cEEEEECchhccHHHHHHHHhcCCCC
Confidence 47899999999999999888764333
No 258
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=34.49 E-value=48 Score=16.78 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=34.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcC---HHHHHHHHHH
Q psy7051 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD---KRDAEDALDA 74 (158)
Q Consensus 15 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~---~~~a~~a~~~ 74 (158)
++.|.++.-..-...|+..+.....|..+.+-.. .+.+.|.|.. .+....+++.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHH
Confidence 4556666655556778888888877877766433 3467888863 3445555544
No 259
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=34.42 E-value=65 Score=18.26 Aligned_cols=56 Identities=13% Similarity=0.250 Sum_probs=37.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcC----HHHHHHHHHHh
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD----KRDAEDALDAM 75 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~----~~~a~~a~~~l 75 (158)
.+|.|.++.-..-...|+..+.....|..+.+-.. .+.+.|.|.. .+....+++.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~------~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE------NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT------TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 45777777655555678888888877877776443 3568888863 34556666543
No 260
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=34.23 E-value=74 Score=18.88 Aligned_cols=52 Identities=8% Similarity=0.102 Sum_probs=35.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhh-cC----ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHH
Q psy7051 16 LKVDNLTYRTTPDDLRRVFER-CG----EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74 (158)
Q Consensus 16 l~V~nl~~~~~~~~l~~~f~~-~G----~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 74 (158)
|.+..+|..++.++|.+.+.. |+ +.-.+++..+ .| -+|++.+.++.+.|+..
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE--eG-----D~itisSd~EL~eAl~l 73 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE--EG-----DPCTVSSQLELEEAFRL 73 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS--SS-----CCEECCSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC--CC-----CcccccCHHHHHHHHHH
Confidence 445567889999988776654 22 3344555443 23 57999999999999974
No 261
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=34.20 E-value=54 Score=20.03 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=19.6
Q ss_pred ceEEEEEccCCCCCCcccEEEEEEcC
Q psy7051 39 EVGDIYIPRDRFTRESRGFAFVRFFD 64 (158)
Q Consensus 39 ~i~~v~~~~~~~~~~~~g~afV~f~~ 64 (158)
+|+.|.+..-...++.++||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57777775555568889999999975
No 262
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=34.13 E-value=73 Score=18.74 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=36.3
Q ss_pred EEEeCCCCCCCHHHHHHHhhh-cC-ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHH
Q psy7051 16 LKVDNLTYRTTPDDLRRVFER-CG-EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDAL 72 (158)
Q Consensus 16 l~V~nl~~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 72 (158)
.|+-.+...++..+|++.+++ |+ +|..|....-+ .+ .--|||.+..-.+|....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~-~~--~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM-DG--EKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--SEEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC-CC--ceEEEEEECCCCcHHHHH
Confidence 344467888999999999987 66 66777554432 11 235999998776655544
No 263
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=34.04 E-value=14 Score=26.43 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=23.3
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCceEEEEE
Q psy7051 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYI 45 (158)
Q Consensus 16 l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~ 45 (158)
..|+|||..++...|..++.....+..+.+
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 479999999999999999987655544433
No 264
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=34.00 E-value=37 Score=26.90 Aligned_cols=43 Identities=16% Similarity=-0.014 Sum_probs=27.8
Q ss_pred HHHHHh--hhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHH
Q psy7051 29 DLRRVF--ERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDAL 72 (158)
Q Consensus 29 ~l~~~f--~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 72 (158)
+|..+| ..+|-|+.+.+...+. ......+++.|.+.+++..++
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHH
Confidence 355666 3588898887755542 223346788999888776644
No 265
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=33.01 E-value=92 Score=23.59 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=28.8
Q ss_pred HHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHH
Q psy7051 28 DDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73 (158)
Q Consensus 28 ~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 73 (158)
..+.++..+||+|..+.+. +.-.|.+.+++.++.++.
T Consensus 36 ~~~~~l~~kYG~i~~~~~g---------~~~~vvv~dp~~~~~il~ 72 (487)
T 3n9y_A 36 LHHVQNFQKYGPIYREKLG---------NVESVYVIDPEDVALLFK 72 (487)
T ss_dssp HHHHHHHHHHCSEEEEEET---------TEEEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHcCceeeccCC---------CCCEEEEcCHHHHHHHHH
Confidence 4567788899999888762 235788889999998885
No 266
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=32.92 E-value=59 Score=20.05 Aligned_cols=26 Identities=8% Similarity=0.171 Sum_probs=18.8
Q ss_pred ceEEEEEccCCCCCCcccEEEEEEcC
Q psy7051 39 EVGDIYIPRDRFTRESRGFAFVRFFD 64 (158)
Q Consensus 39 ~i~~v~~~~~~~~~~~~g~afV~f~~ 64 (158)
+|+.|.+..-...++.++||-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46667665555567888999999875
No 267
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=31.62 E-value=90 Score=19.02 Aligned_cols=47 Identities=21% Similarity=0.274 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHhhh-cC---ceEEE-EEccCCCCCCcccEEEEEEcCHHHHHH
Q psy7051 23 YRTTPDDLRRVFER-CG---EVGDI-YIPRDRFTRESRGFAFVRFFDKRDAED 70 (158)
Q Consensus 23 ~~~~~~~l~~~f~~-~G---~i~~v-~~~~~~~~~~~~g~afV~f~~~~~a~~ 70 (158)
..++..+|++.+.+ |+ ++..| .+......++..|||.| |++.+.|..
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk 79 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQ 79 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45678888887765 44 33333 44444445666777755 666666554
No 268
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=31.53 E-value=58 Score=16.77 Aligned_cols=55 Identities=13% Similarity=0.228 Sum_probs=36.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcC---HHHHHHHHHH
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD---KRDAEDALDA 74 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~---~~~a~~a~~~ 74 (158)
.++.|.++.-..-...|+..+.....|..+.+... .+.+.|.|.. .+....+++.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEC---CHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCHHHHHHHHHH
Confidence 35778887765556778888988877877776443 3467888863 3344455544
No 269
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=31.35 E-value=1.2e+02 Score=20.18 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=36.7
Q ss_pred EEEeCCCCCCCHHHHHHHhhh-cC-ceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHH
Q psy7051 16 LKVDNLTYRTTPDDLRRVFER-CG-EVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74 (158)
Q Consensus 16 l~V~nl~~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 74 (158)
.|+-.+...++..+|++.++. |+ .|..|..+.-+. + .--|||.+..-.+|......
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-~--~KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD-G--EKKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS-S--CEEEEEEECTTSCHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC-C--ceEEEEEECCCCcHHHHHHh
Confidence 344456788899999998887 66 667775443321 1 23599999877665555443
No 270
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=31.16 E-value=59 Score=16.75 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=36.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCH---HHHHHHHHH
Q psy7051 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDK---RDAEDALDA 74 (158)
Q Consensus 15 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~---~~a~~a~~~ 74 (158)
++.|.++.-..-...|+..+.....|..+.+-.. .+.+.|.|... +....+++.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP------KGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT------TTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCHHHHHHHHHH
Confidence 4778888766566788899988877877776443 34677888643 444455543
No 271
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=29.87 E-value=68 Score=17.12 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=39.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcC----HHHHHHHHHHh
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD----KRDAEDALDAM 75 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~----~~~a~~a~~~l 75 (158)
..++.|.++.-..-...|+..+.....|..+.+-.. .+.+.|.|.. .+....+++.+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 456888898887778889999998877766665433 3568888864 34555666543
No 272
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=29.54 E-value=1.1e+02 Score=19.33 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=18.9
Q ss_pred cCceEEEEEccCCCCCCcccEEEEE-EcCHHHHHHHHHHhC
Q psy7051 37 CGEVGDIYIPRDRFTRESRGFAFVR-FFDKRDAEDALDAMD 76 (158)
Q Consensus 37 ~G~i~~v~~~~~~~~~~~~g~afV~-f~~~~~a~~a~~~l~ 76 (158)
+-.|+.|.+..|. ....+||. |-+.++.+.+++.|+
T Consensus 43 ~vtVt~V~vS~Dl----~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDF----SACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTS----CCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCC----cEEEEEEEecCChhhHHHHHHHHH
Confidence 4478899987663 12245555 434444344444344
No 273
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=29.44 E-value=19 Score=20.62 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=14.4
Q ss_pred CHHHHHHHhhhcCceEEE
Q psy7051 26 TPDDLRRVFERCGEVGDI 43 (158)
Q Consensus 26 ~~~~l~~~f~~~G~i~~v 43 (158)
|--||++++.+||.+.++
T Consensus 4 tlYDVqQLLK~fG~~IY~ 21 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVYF 21 (72)
T ss_dssp SHHHHHHHHHTTTCCCCC
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 456899999999987654
No 274
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=29.00 E-value=1e+02 Score=18.88 Aligned_cols=56 Identities=14% Similarity=0.261 Sum_probs=33.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcC----HHHHHHHHHHh
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD----KRDAEDALDAM 75 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~----~~~a~~a~~~l 75 (158)
.++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .++...+++.+
T Consensus 82 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 82 IELTITGMTCASCVHNIESKLTRTNGITYASVALA------TSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT------TTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC------CCEEEEEECCCCCCHHHHHHHHHhC
Confidence 45667777655455667777777766666655332 2457777752 34455555543
No 275
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=28.99 E-value=43 Score=19.58 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=17.6
Q ss_pred eCCCCCCCHHHHHHHhhhcC
Q psy7051 19 DNLTYRTTPDDLRRVFERCG 38 (158)
Q Consensus 19 ~nl~~~~~~~~l~~~f~~~G 38 (158)
|.|...+++++|++++....
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 67888999999999999864
No 276
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.98 E-value=35 Score=19.21 Aligned_cols=11 Identities=36% Similarity=0.597 Sum_probs=8.4
Q ss_pred ccEEEEEEcCH
Q psy7051 55 RGFAFVRFFDK 65 (158)
Q Consensus 55 ~g~afV~f~~~ 65 (158)
...|+|.|.+.
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 45799999763
No 277
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=28.58 E-value=1.1e+02 Score=20.26 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=27.1
Q ss_pred CCHHHHHHHhhhcCce---EEEEEccCCCCCCcccEEEEE
Q psy7051 25 TTPDDLRRVFERCGEV---GDIYIPRDRFTRESRGFAFVR 61 (158)
Q Consensus 25 ~~~~~l~~~f~~~G~i---~~v~~~~~~~~~~~~g~afV~ 61 (158)
.++++|.++-.+.|.+ ..+.|..+..+|....+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5789999999999976 455566664478777777753
No 278
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=28.54 E-value=59 Score=18.97 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=27.5
Q ss_pred CCHHHHHHHhhhcCce-EEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCcccCCc
Q psy7051 25 TTPDDLRRVFERCGEV-GDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGR 83 (158)
Q Consensus 25 ~~~~~l~~~f~~~G~i-~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~ 83 (158)
-++++|+.+++.|-.- ..+ -.+|...+-++...|.+..+..+|+-+
T Consensus 33 ktedelkkyleefrkesqni-------------kvlilvsndeeldkakelaqkmeidvr 79 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNI-------------KVLILVSNDEELDKAKELAQKMEIDVR 79 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSE-------------EEEEEESSHHHHHHHHHHHHHTTCCEE
T ss_pred ccHHHHHHHHHHHHhhccCe-------------EEEEEEcChHHHHHHHHHHHhhceeee
Confidence 4789999998887521 111 234555666777777655445555433
No 279
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=28.22 E-value=1.3e+02 Score=19.77 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHhhh-cC---ceEEE-EEccCCCCCCcccEEEEEEcCHHHHH
Q psy7051 23 YRTTPDDLRRVFER-CG---EVGDI-YIPRDRFTRESRGFAFVRFFDKRDAE 69 (158)
Q Consensus 23 ~~~~~~~l~~~f~~-~G---~i~~v-~~~~~~~~~~~~g~afV~f~~~~~a~ 69 (158)
..++..+|.+.+.. |+ +++.| .|......+...|||.| |++.+.|.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aK 81 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLL 81 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHH
Confidence 35678888888776 54 23333 44444445566677776 66666655
No 280
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=28.10 E-value=68 Score=16.54 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=36.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcC----HHHHHHHHHH
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD----KRDAEDALDA 74 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~----~~~a~~a~~~ 74 (158)
.++.|.++.-..-...|+..+.....|..+.+-.. .+.+.|.|.. .+....++..
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 45778887665555678888888877877766433 3467888863 3445555554
No 281
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=28.07 E-value=1.1e+02 Score=18.86 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHhhh-cC---ceEEE-EEccCCCCCCcccEEEEEEcCHHHHHH
Q psy7051 23 YRTTPDDLRRVFER-CG---EVGDI-YIPRDRFTRESRGFAFVRFFDKRDAED 70 (158)
Q Consensus 23 ~~~~~~~l~~~f~~-~G---~i~~v-~~~~~~~~~~~~g~afV~f~~~~~a~~ 70 (158)
...+..+|++.+.+ |+ ++..| .+......++..|||.| |++.+.|..
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35678888877765 44 23333 44444445667777765 666666653
No 282
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=28.04 E-value=69 Score=16.54 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=35.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcC----HHHHHHHHHHh
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD----KRDAEDALDAM 75 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~----~~~a~~a~~~l 75 (158)
.++.|.++.-..-...|+..+.....|..+.+-.. .+.+.|.|.. .+....+++.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA------NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 35777777654445678888888777766665433 3468888863 34455566543
No 283
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=27.58 E-value=1.5e+02 Score=22.39 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=27.9
Q ss_pred HHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHH
Q psy7051 27 PDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73 (158)
Q Consensus 27 ~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 73 (158)
...|.++.++||+|..+.+. +.-+|...+.+.+..++.
T Consensus 34 ~~~~~~~~~kYG~i~~~~~~---------~~~~vvv~~~~~i~~il~ 71 (461)
T 3ld6_A 34 IEFLENAYEKYGPVFSFTMV---------GKTFTYLLGSDAAALLFN 71 (461)
T ss_dssp HHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEEEEC---------CccEEEEeCHHHHHHHHh
Confidence 34577888899999888762 345677778888887774
No 284
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=27.41 E-value=1.4e+02 Score=22.38 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=35.4
Q ss_pred EEeCCCCC---CCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHH
Q psy7051 17 KVDNLTYR---TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74 (158)
Q Consensus 17 ~V~nl~~~---~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 74 (158)
+|||+..- -....+.++..+||+|..+.+. +.-+|...+.+.++.++..
T Consensus 20 liG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvv~~~~~v~~il~~ 71 (476)
T 3e6i_A 20 IIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG---------SQRMVVMHGYKAVKEALLD 71 (476)
T ss_dssp TTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHHT
T ss_pred cccChhhhccccHhHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHhc
Confidence 46777532 2245678888999999877762 2467888899999998853
No 285
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=27.21 E-value=1.1e+02 Score=19.09 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=15.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhhhcC
Q psy7051 15 SLKVDNLTYRTTPDDLRRVFERCG 38 (158)
Q Consensus 15 ~l~V~nl~~~~~~~~l~~~f~~~G 38 (158)
.|.|++|+..++...|.++|..+|
T Consensus 51 VlDl~~l~~~~dl~~L~~~l~~~g 74 (120)
T 3ghf_A 51 VINVSGLESPVNWPELHKIVTSTG 74 (120)
T ss_dssp EEEEEECCSSCCHHHHHHHHHTTT
T ss_pred EEEccccCChHHHHHHHHHHHHcC
Confidence 455666665566677777777776
No 286
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=26.88 E-value=78 Score=16.80 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=36.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcC----HHHHHHHHHHh
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD----KRDAEDALDAM 75 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~----~~~a~~a~~~l 75 (158)
.++.|.++.-..-...|+..+.....|..+.+-.. .+.+.|.|.. .+....+++.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALM------AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTT------TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35778787766666778888888877776655322 3467888863 34455566543
No 287
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=26.86 E-value=73 Score=16.44 Aligned_cols=52 Identities=12% Similarity=0.117 Sum_probs=31.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHH
Q psy7051 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73 (158)
Q Consensus 15 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 73 (158)
++.|.++.-..-...|+..+... .|..+.+-.. .+.+.|.|...+....+++
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~ 55 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVE------EKKVVVETENLDSVLKKLE 55 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETT------TTEEEEECSCHHHHHHHHH
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECC------CCEEEEEECCHHHHHHHHH
Confidence 45565665444456688888888 7766665432 3467788875434445554
No 288
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=26.69 E-value=39 Score=19.55 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=12.9
Q ss_pred CceEEEEEccCCCCCCcccEEEEEEcCH
Q psy7051 38 GEVGDIYIPRDRFTRESRGFAFVRFFDK 65 (158)
Q Consensus 38 G~i~~v~~~~~~~~~~~~g~afV~f~~~ 65 (158)
|.|+.|.. ....|+|.|.+.
T Consensus 45 GTI~kV~~--------~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDS--------AREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEET--------TTTEEEEEETTS
T ss_pred EEEEEecc--------CCCEEEEEEcCC
Confidence 56665543 245799999864
No 289
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=26.62 E-value=1.5e+02 Score=22.26 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=29.4
Q ss_pred HHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHH
Q psy7051 27 PDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74 (158)
Q Consensus 27 ~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 74 (158)
...+.++..+||+|..+.+. +.-.|.+.+++.++.++..
T Consensus 51 ~~~~~~l~~~YG~i~~~~~g---------~~~~vvv~dp~~~~~il~~ 89 (482)
T 3k9v_A 51 HDTLAEYHKKYGQIFRMKLG---------SFDSVHLGSPSLLEALYRT 89 (482)
T ss_dssp HHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEccC---------CCCEEEEcCHHHHHHHHHh
Confidence 34577888999999888762 2356778889999888864
No 290
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=26.57 E-value=1.2e+02 Score=18.73 Aligned_cols=55 Identities=11% Similarity=0.238 Sum_probs=30.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEc----CHHHHHHHHHHh
Q psy7051 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFF----DKRDAEDALDAM 75 (158)
Q Consensus 15 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~----~~~~a~~a~~~l 75 (158)
+|.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.++...+++.+
T Consensus 77 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 77 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEESSCCSSSHHHHHHHHHTTSSSEEECCEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCceEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 4556666555555566666666655555544222 346777775 344555556543
No 291
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=25.86 E-value=65 Score=15.67 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=12.7
Q ss_pred CCCCCHHHHHHHhhhc
Q psy7051 22 TYRTTPDDLRRVFERC 37 (158)
Q Consensus 22 ~~~~~~~~l~~~f~~~ 37 (158)
...++.++|+.+|...
T Consensus 19 ~rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 19 FIDTDLNQLKEVFSGI 34 (37)
T ss_dssp SSCCCHHHHHHHHHTC
T ss_pred cCcCCHHHHHHHHHHc
Confidence 3467899999999875
No 292
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=25.44 E-value=1.8e+02 Score=21.06 Aligned_cols=42 Identities=14% Similarity=0.351 Sum_probs=28.4
Q ss_pred HHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q psy7051 30 LRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMD 76 (158)
Q Consensus 30 l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 76 (158)
|++.|+.+|--.-..+ .|..-|+-||.+-+.+.|+..++.|-
T Consensus 47 ~~~~~~~~~~~~~~~~-----~ga~gg~~~~~~~~~~~a~~~~~~l~ 88 (291)
T 1o57_A 47 IKQTFEQQGIGTLLTV-----PGAAGGVKYIPKMKQAEAEEFVQTLG 88 (291)
T ss_dssp HHHHHHHTTSEEEEEE-----CSTTCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEe-----cCCCCceEEcccCCHHHHHHHHHHHH
Confidence 4578888864322222 56667888999988888887766543
No 293
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=25.42 E-value=75 Score=16.09 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=36.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcC----HHHHHHHHHH
Q psy7051 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD----KRDAEDALDA 74 (158)
Q Consensus 15 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~----~~~a~~a~~~ 74 (158)
++.|.++.-..-...|+..+.....|..+.+-.. .+.+.|.|.. .+....+++.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5778888776667778899998877877766433 3567888863 3444555543
No 294
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=24.85 E-value=1.4e+02 Score=19.19 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=28.4
Q ss_pred CCCHHHHHHHhhh-cC---ceEEE-EEccCCCCCCcccEEEEEEcCHHHHHH
Q psy7051 24 RTTPDDLRRVFER-CG---EVGDI-YIPRDRFTRESRGFAFVRFFDKRDAED 70 (158)
Q Consensus 24 ~~~~~~l~~~f~~-~G---~i~~v-~~~~~~~~~~~~g~afV~f~~~~~a~~ 70 (158)
.++..+|.+.+.. |+ ++..| .|......+...|||.| |++.+.|..
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 5688999888865 55 23333 44444445666677766 666666553
No 295
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=24.24 E-value=85 Score=16.31 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=34.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcC
Q psy7051 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD 64 (158)
Q Consensus 13 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~ 64 (158)
..++.|.++.-..-...|+..+.....|..+.+-.. .+.+.|.|..
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~ 50 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA------TNKAHIKYDP 50 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT------TTEEEEEECT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec------CCEEEEEECC
Confidence 356889898877777788999998877877776433 3568888864
No 296
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=24.21 E-value=83 Score=16.18 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=37.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcC----HHHHHHHHHH
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD----KRDAEDALDA 74 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~----~~~a~~a~~~ 74 (158)
.++.|.++.-..-...|+..+.....|..+.+-.. .+.+.|.|.. .+....+++.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 63 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE------TRQAVVTFDDAKTSVQKLTKATAD 63 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTCCHHHHHHHHHH
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHh
Confidence 35677777766666778899998888877776433 3467888863 3445556654
No 297
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=23.73 E-value=1.2e+02 Score=17.94 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=38.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcC----HHHHHHHHHH
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD----KRDAEDALDA 74 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~----~~~a~~a~~~ 74 (158)
.+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|.|.. .+....+|+.
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~ 68 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAA 68 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 45778888777677889999998877877776433 3578888874 3445556654
No 298
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=23.60 E-value=1.3e+02 Score=18.39 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHhh-hcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCc
Q psy7051 20 NLTYRTTPDDLRRVFE-RCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGR 78 (158)
Q Consensus 20 nl~~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 78 (158)
.++.-+.-++|+.... .||....+....+ --.|-..+.++...|++.|+..
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccC
Confidence 5677788888877664 5888777766432 2578889999999999877643
No 299
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=23.40 E-value=1.8e+02 Score=21.71 Aligned_cols=38 Identities=13% Similarity=0.001 Sum_probs=29.0
Q ss_pred HHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHH
Q psy7051 27 PDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73 (158)
Q Consensus 27 ~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 73 (158)
...+.++..+||+|..+.+. +.-.|.+.+++.+..++.
T Consensus 13 ~~~~~~~~~kyG~v~~~~~~---------~~~~vvv~~p~~~~~il~ 50 (456)
T 3mdm_A 13 QDVFLDWAKKYGPVVRVNVF---------HKTSVIVTSPESVKKFLM 50 (456)
T ss_dssp HHHHHHHHHHHCSEEEEEET---------TEEEEEECCHHHHHHHHT
T ss_pred HHHHHHHHHHhCCeEEEEeC---------CCCEEEECCHHHHHHHHh
Confidence 45677888999999888762 235677888998888873
No 300
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=23.34 E-value=34 Score=20.90 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=8.3
Q ss_pred HHHHHHhhhcC
Q psy7051 28 DDLRRVFERCG 38 (158)
Q Consensus 28 ~~l~~~f~~~G 38 (158)
..|+++|++||
T Consensus 91 ~~ire~fqKYG 101 (101)
T 4aj5_1 91 MKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 46888999997
No 301
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=23.04 E-value=47 Score=19.46 Aligned_cols=19 Identities=16% Similarity=0.337 Sum_probs=16.3
Q ss_pred eCCCCCCCHHHHHHHhhhc
Q psy7051 19 DNLTYRTTPDDLRRVFERC 37 (158)
Q Consensus 19 ~nl~~~~~~~~l~~~f~~~ 37 (158)
|.|...+++++|++++...
T Consensus 48 Gqi~~ki~e~~L~~lL~~i 66 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGI 66 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 5678889999999999876
No 302
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=23.00 E-value=92 Score=16.28 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=35.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcC----HHHHHHHHHH
Q psy7051 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD----KRDAEDALDA 74 (158)
Q Consensus 15 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~----~~~a~~a~~~ 74 (158)
++.|.++.-..-...|+..+.....|..+.+-.. .+.+.|.|.. .+....+++.
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 62 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDD 62 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5677777655555678888888877877766433 3468888863 3455566654
No 303
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=22.68 E-value=1.6e+02 Score=19.06 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=29.3
Q ss_pred HHHHHhhhcCceEEEEE-----ccCC----------CCCCcccEEEEEEcCHHHHHHHHHH
Q psy7051 29 DLRRVFERCGEVGDIYI-----PRDR----------FTRESRGFAFVRFFDKRDAEDALDA 74 (158)
Q Consensus 29 ~l~~~f~~~G~i~~v~~-----~~~~----------~~~~~~g~afV~f~~~~~a~~a~~~ 74 (158)
...++|..||.+..+.. +..+ ..+...-|.+|+|.+.+...++.++
T Consensus 49 ~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 49 KAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 34578899996654432 2111 1233456899999999887777644
No 304
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=22.62 E-value=52 Score=18.45 Aligned_cols=10 Identities=30% Similarity=0.497 Sum_probs=8.3
Q ss_pred ccEEEEEEcC
Q psy7051 55 RGFAFVRFFD 64 (158)
Q Consensus 55 ~g~afV~f~~ 64 (158)
.+.|+|.|.+
T Consensus 41 ~gtC~V~F~D 50 (66)
T 2eqj_A 41 KQSCFIIFED 50 (66)
T ss_dssp TTEEEEEETT
T ss_pred CcEEEEEEcc
Confidence 5789999975
No 305
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}
Probab=22.32 E-value=2e+02 Score=19.96 Aligned_cols=46 Identities=4% Similarity=0.173 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q psy7051 23 YRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMD 76 (158)
Q Consensus 23 ~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 76 (158)
..+|+++|+.+|...-.- +.. .....+..|.|.+.+.|..+++.|.
T Consensus 89 ~~vtd~ei~~~Y~~~~~~--f~~------~~~~~~~~I~~~~~~~A~~~~~~l~ 134 (252)
T 3rfw_A 89 IKIDAAKVKAFYDQNKDK--YVK------PARVQAKHILVATEKEAKDIINELK 134 (252)
T ss_dssp CCCCHHHHHHHHHHHGGG--SEE------CCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhHHh--ccc------cceEEEEEEEeCCHHHHHHHHHHHH
Confidence 367999999999764211 000 0012356788888899999888887
No 306
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=21.14 E-value=1.5e+02 Score=17.95 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHHhh-hcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCCc
Q psy7051 20 NLTYRTTPDDLRRVFE-RCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGR 78 (158)
Q Consensus 20 nl~~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 78 (158)
.++.-+.-++|+.... .||.-..+....+ --.|-..+.++...|++.|+..
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs 86 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS 86 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccC
Confidence 5677788888877664 5898777766533 3688899999999999876643
No 307
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=21.12 E-value=1.1e+02 Score=17.12 Aligned_cols=55 Identities=13% Similarity=0.139 Sum_probs=33.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEc-CHHHHHHHHHH
Q psy7051 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFF-DKRDAEDALDA 74 (158)
Q Consensus 14 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~-~~~~a~~a~~~ 74 (158)
.++.|.++.-..-...|+..+.....|..+.+-.. .+.+.|++. +.+....+|+.
T Consensus 24 ~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~------~~~~~V~~~~~~~~i~~~i~~ 79 (85)
T 2k2p_A 24 LSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPA------SRTVVVGGVSDAAHIAEIITA 79 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETT------TTEEEEESCCCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECC------CCEEEEEecCCHHHHHHHHHH
Confidence 35666666544445668888888777766666433 245667764 34555666654
No 308
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=20.63 E-value=1.3e+02 Score=18.12 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=31.9
Q ss_pred CCCHHHHHHHhhhcCceEE---EEEccCCCCCCcccEEEEEEc-CHHHHHHHHHHhCCc
Q psy7051 24 RTTPDDLRRVFERCGEVGD---IYIPRDRFTRESRGFAFVRFF-DKRDAEDALDAMDGR 78 (158)
Q Consensus 24 ~~~~~~l~~~f~~~G~i~~---v~~~~~~~~~~~~g~afV~f~-~~~~a~~a~~~l~g~ 78 (158)
.+.+-.|-++...||--.+ -.+-. ..+...|.-+|++. +.++.++|++.|...
T Consensus 32 ~~~~PiIs~l~~~~~v~vnIL~g~I~~--i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 32 SVDAPLLSETARRFNVNNNIISAQMDY--AGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp CTTCCHHHHHHHHSCCEEEEEEEEEEE--ETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred ccChhHHHHHHHHHCCCEEEEEEEeEE--ECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 3455567788888874322 22211 23446778888887 455677777766543
No 309
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=20.51 E-value=1e+02 Score=15.80 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=34.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEc---CHHHHHHHHHHh
Q psy7051 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFF---DKRDAEDALDAM 75 (158)
Q Consensus 15 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~---~~~~a~~a~~~l 75 (158)
++.|.++.-..-...|+..+.....|..+.+-.. .+.+.|.|. +.+....+++.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLV------TNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTT------TTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHHC
Confidence 4667777665555678888888877777665332 356788886 234455555543
No 310
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=20.42 E-value=1.7e+02 Score=18.31 Aligned_cols=47 Identities=6% Similarity=-0.007 Sum_probs=37.1
Q ss_pred HHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q psy7051 27 PDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77 (158)
Q Consensus 27 ~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g 77 (158)
.+++.+.+..+-+|.+|..+.. ...-++.|.+.+.++....+..+.+
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~tG----~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIAG----AACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEES----SSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcChhhheeeeeeC----CCCEEEEEEECCHHHHHHHHHHhcC
Confidence 6778888889999999976543 2345788889999999999887765
No 311
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=20.28 E-value=2.5e+02 Score=21.01 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=27.3
Q ss_pred HHHHHHHhhhcCceEEEEEccCCCCCCcccEEEEEEcCHHHHHHHHH
Q psy7051 27 PDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73 (158)
Q Consensus 27 ~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 73 (158)
...+.++..+||+|..+.+. |.-+|...+.+.+..++.
T Consensus 34 ~~~~~~~~~~yG~v~~l~l~---------g~~~vvv~~~~~~~~il~ 71 (461)
T 3i3k_A 34 IEFLENAYEKYGPVFSFTMV---------GKTFTYLLGSDAAALLFN 71 (461)
T ss_dssp HHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEEEec---------CceEEEEeChHHHHHHHh
Confidence 34566777899999888772 245667778888887774
No 312
>2ftr_A BH0200; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.40A {Bacillus halodurans} SCOP: d.58.4.15
Probab=20.21 E-value=99 Score=18.63 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=16.5
Q ss_pred ccEEEEEEcCHHHHHHHHHH
Q psy7051 55 RGFAFVRFFDKRDAEDALDA 74 (158)
Q Consensus 55 ~g~afV~f~~~~~a~~a~~~ 74 (158)
-+.+.+.|++.++.++|+..
T Consensus 61 d~iael~fds~ea~~aa~~s 80 (108)
T 2ftr_A 61 YLMCEMYYDDHESLQQAMRT 80 (108)
T ss_dssp EEEEEEEESSHHHHHHHHHS
T ss_pred eEEEEEEECCHHHHHHHHcC
Confidence 46788999999999988853
Done!