RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7051
(158 letters)
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 82.7 bits (204), Expect = 2e-22
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
SL V +L T L F G + I + RD TR S G+A+V F DAE ALD
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 75 MDGRMLDGRELRVQMAR 91
M+ ++ G+ +R+ ++
Sbjct: 62 MNFDVIKGKPVRIMWSQ 78
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 75.8 bits (186), Expect = 1e-19
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
+L V NL T D L +F + G + I RD+ T RG AFVR+ + +A++A+ A
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67
Query: 75 MDGRMLDG--RELRVQMA 90
++ + +G + L V++A
Sbjct: 68 LNNVIPEGGSQPLSVRLA 85
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 72.3 bits (177), Expect = 3e-18
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
+L V+ L T +L +F G + I RD T S G+AFV F + D++ A+
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 75 MDGRMLDGRELRVQMARYG 93
++G + + L+V AR G
Sbjct: 64 LNGITVRNKRLKVSYARPG 82
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 72.3 bits (177), Expect = 4e-18
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDR-FTRESRGFAFVRFFDKR 66
P+ + + V N+ ++ ++R +F GE+ + +P+ T RGF FV F K+
Sbjct: 3 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQ 62
Query: 67 DAEDALDAM-DGRMLDGRELRVQMA 90
DA+ A +A+ L GR L ++ A
Sbjct: 63 DAKKAFNALCHSTHLYGRRLVLEWA 87
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 70.4 bits (172), Expect = 1e-17
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
+ L+++TT + LR F + GEV + + RD T+ SRGF FV F D+ + L A
Sbjct: 5 IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-AQSR 63
Query: 78 RMLDGRELRVQMA 90
LD + + ++A
Sbjct: 64 HELDSKTIDPKVA 76
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 70.3 bits (172), Expect = 1e-17
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
L V NL + + D++ +F G + + + S G A V F K DA A+
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHY-DRSGRSLGTADVHFERKADALKAMKQY 61
Query: 76 DGRMLDGRELRVQMA 90
+G LDGR + +Q+
Sbjct: 62 NGVPLDGRPMNIQLV 76
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 69.2 bits (169), Expect = 5e-17
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
V L+ T + +R F GEV I +P D T + RGF F+ F ++ + ++
Sbjct: 4 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKY 62
Query: 78 RMLDGRELRVQMA 90
+ + +++A
Sbjct: 63 HNVGLSKCEIKVA 75
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 69.3 bits (169), Expect = 5e-17
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGD---IYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
+ NL + TT + L+ VF + G + S GF FV + A+ AL
Sbjct: 3 IKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 62
Query: 75 MDGRMLDGRELRVQMARYGRPPS 97
+ G +DG +L V+++ P+
Sbjct: 63 LQGHTVDGHKLEVRISERATKPA 85
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 67.7 bits (165), Expect = 2e-16
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
+ L D ++ + G + + +D T S+G+AF + D + A+ ++G
Sbjct: 6 IGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 65
Query: 78 RMLDGRELRVQMARYG 93
L ++L VQ A G
Sbjct: 66 MQLGDKKLLVQRASVG 81
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 68.1 bits (166), Expect = 3e-16
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD 64
R PP E L + NL Y+ T +++ +F + G + I + TR G A+V + D
Sbjct: 1 RLPP--EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETR---GTAYVVYED 55
Query: 65 KRDAEDALDAMDGRMLDGRELRVQMARYGRPPSSSRSRGGRDRDRRRDRSRSRDRRY 121
DA++A D + G + R L V ++R+ D ++ ++ + +Y
Sbjct: 56 IFDAKNACDHLSGFNVCNRYLVVLYYN------ANRAFQKMDTKKKEEQLKLLKEKY 106
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 67.3 bits (164), Expect = 4e-16
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
+L V NL++ TT + + +F + G++ I + D+ + + GF FV ++ + DAE+A+
Sbjct: 9 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 68
Query: 75 MDGRMLDGRELRVQMARYGRPP 96
++G LD R +R +
Sbjct: 69 INGTRLDDRIIRTDWDAGFKEG 90
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 67.0 bits (163), Expect = 4e-16
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
S G+P P I +KV N+ + + D++ F + + G A V
Sbjct: 3 SSGKPGPTI-----IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVA 57
Query: 62 FFDKRDAEDALDAMDGRMLDGRELRVQMA 90
F + +A A+ ++ R + R++++ +
Sbjct: 58 FESRDEATAAVIDLNDRPIGSRKVKLVLG 86
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 65.9 bits (160), Expect = 1e-15
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
+L V+ L T ++ R +F GE+ + RD+ T +S G+ FV + D +DAE A++
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 75 MDGRMLDGRELRVQMAR 91
++G L + ++V AR
Sbjct: 64 LNGLRLQTKTIKVSYAR 80
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 65.9 bits (160), Expect = 1e-15
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDK 65
P +EG + L V ++ D+++ F GE+ +I++ DR T S+G+A V +
Sbjct: 1 PQRSVEGWI-LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETH 59
Query: 66 RDAEDALDAMDGRMLDGRELRVQMAR 91
+ A A +A++G + G+ ++V
Sbjct: 60 KQALAAKEALNGAEIMGQTIQVDWCF 85
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 65.0 bits (158), Expect = 2e-15
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
+ L++ TT DL+ F + GEV D + D T SRGF FV F + + +D
Sbjct: 4 IGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-QKE 62
Query: 78 RMLDGRELRVQMA 90
L+G+ + + A
Sbjct: 63 HKLNGKVIDPKRA 75
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 64.7 bits (157), Expect = 3e-15
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDK 65
P R + +++V NL+ T DL+ +F G + IY+ +D+ T +S+GFAF+ F +
Sbjct: 1 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 60
Query: 66 RDAEDALDAMDGRMLDGRELRVQMAR 91
DA A+ + G D L V+ A+
Sbjct: 61 EDAARAIAGVSGFGYDHLILNVEWAK 86
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 64.3 bits (156), Expect = 4e-15
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
V L T +L ++F + G + I D+ T SRG F+RF + +AE+A+ ++G
Sbjct: 11 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 70
Query: 78 RMLDGRE--LRVQMA 90
+ G + V+ A
Sbjct: 71 QKPSGATEPITVKFA 85
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 63.9 bits (155), Expect = 5e-15
Identities = 33/73 (45%), Positives = 45/73 (61%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
L V L+ TT DLR VF + G + D+ I D+ +R SRGFAFV F + DA++A +
Sbjct: 11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 70
Query: 75 MDGRMLDGRELRV 87
+G LDGR +RV
Sbjct: 71 ANGMELDGRRIRV 83
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 64.1 bits (156), Expect = 7e-15
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 2 SYGRPPPRIEGMVSLKVDNL-TYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
S G+ PR + + NL T D+ +F + G++ + + GFAFV
Sbjct: 5 SSGKTDPRSMN-SRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFV 55
Query: 61 RFFDKRDAEDALDAMDGRMLDGRELRVQMARYGRPPSSSRSRG 103
++ ++R+A A+ DGRM+ G+ L + +A + S S G
Sbjct: 56 QYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRSGPSSG 98
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 63.9 bits (155), Expect = 7e-15
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
++ V L + + L +F + G V + ++P+DR T + +G+ FV F + DA+ A+
Sbjct: 11 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 70
Query: 75 MDGRMLDGRELRVQMAR 91
MD L G+ +RV A
Sbjct: 71 MDMIKLYGKPIRVNKAS 87
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 63.9 bits (155), Expect = 7e-15
Identities = 30/78 (38%), Positives = 38/78 (48%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
V L L F G++ DI IP D T + RGFAFV F DA A+D M+
Sbjct: 10 VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 69
Query: 78 RMLDGRELRVQMARYGRP 95
L GR +RV +A+ R
Sbjct: 70 SELFGRTIRVNLAKPMRI 87
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 63.6 bits (154), Expect = 8e-15
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIY-IPRDRFTRESRGFAFVRFFDKRDAEDALDAMD 76
+ NL L F G + I RD T S+G+AF+ F ++ A++AM+
Sbjct: 3 IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 62
Query: 77 GRMLDGRELRVQMAR 91
G+ L R + V A
Sbjct: 63 GQYLCNRPITVSYAF 77
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 63.5 bits (154), Expect = 1e-14
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAE 69
++ L V L ++TT DL+ F GEV + + +D T S+GF FVRF +
Sbjct: 5 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 64
Query: 70 DALDAMDGRMLDGRELRVQMAR 91
+ M+DGR ++
Sbjct: 65 KVMSQRH--MIDGRWCDCKLPN 84
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 63.9 bits (155), Expect = 1e-14
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 6 PPPR---IEGMVSLK--VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRE--SRGFA 58
P + MV + +D+ Y +D+R + G V I IPR E G
Sbjct: 2 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKI 61
Query: 59 FVRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91
FV F D + A+ + GR R + +
Sbjct: 62 FVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 94
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 63.6 bits (154), Expect = 1e-14
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGD--IYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73
L + + +++ + E I ++RGFAFV + R A A
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 74 AMDGR--MLDGRELRVQMAR 91
+ L G ++ V A
Sbjct: 64 KLMPGRIQLWGHQIAVDWAE 83
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 62.7 bits (152), Expect = 2e-14
Identities = 13/77 (16%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
++ + T +R+ F G++ +I + ++ ++FVRF A A+ +
Sbjct: 20 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHESAAHAIVS 73
Query: 75 MDGRMLDGRELRVQMAR 91
++G ++G ++ +
Sbjct: 74 VNGTTIEGHVVKCYWGK 90
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 61.6 bits (149), Expect = 9e-14
Identities = 13/75 (17%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
+++ + + E+ GEV ++ + + G +V+F + DAE A+
Sbjct: 29 DVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVID 87
Query: 75 MDGRMLDGRELRVQM 89
++ R +G+ + ++
Sbjct: 88 LNNRWFNGQPIHAEL 102
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 60.8 bits (147), Expect = 1e-13
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
V NL T +++R++FE+ G+ G+++I +D+ F F+R + AE A +D
Sbjct: 13 VGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEIAKVELDN 66
Query: 78 RMLDGRELRVQMARYG 93
L G++LRV+ A +
Sbjct: 67 MPLRGKQLRVRFACHS 82
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 60.6 bits (146), Expect = 1e-13
Identities = 15/76 (19%), Positives = 31/76 (40%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
L + N T ++R + + V SR FA++ K DA ++ +
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 76 DGRMLDGRELRVQMAR 91
+G ++G L +++
Sbjct: 64 NGLKIEGYTLVTKVSN 79
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 60.5 bits (146), Expect = 2e-13
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
V NL+Y ++ +DL ++F G + +++ P D T++ +GFAFV F A A +DG
Sbjct: 13 VRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG 72
Query: 78 RMLDGRELRVQMARYGRPPSSSRSRGG 104
++ GR L V + + S S G
Sbjct: 73 QVFQGRMLHVLPSTIKKEASQSGPSSG 99
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 59.9 bits (145), Expect = 3e-13
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
+ D L +DLR + G++ + + G A V F D +A+ + +
Sbjct: 22 FEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHP----DGVASVSFRDPEEADYCIQTL 77
Query: 76 DGRMLDGRELRVQMAR 91
DGR GR++ Q
Sbjct: 78 DGRWFGGRQITAQAWD 93
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 59.0 bits (142), Expect = 3e-13
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
V L+ TT +D++ FE+ G+V D + D+ T RGF FV F + E +
Sbjct: 4 VGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC-EIHF 62
Query: 78 RMLDGRELRVQMA 90
++ + + + A
Sbjct: 63 HEINNKMVECKKA 75
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 59.8 bits (144), Expect = 4e-13
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIP--------RDRFTRESRGFAFVRFFDKR 66
++ V L T DDL F++CG V D+ T + +G A V + D
Sbjct: 10 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP 69
Query: 67 DAEDALDAMDGRMLDGRELRVQMARYGRPPSSS 99
A+ A++ DG+ G +L+V +AR +PP +S
Sbjct: 70 TAKAAVEWFDGKDFQGSKLKVSLAR-KKPPMNS 101
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 61.6 bits (148), Expect = 4e-13
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
+ V + T LR FE+ G++ I I DR + + RGFAFV F D + +
Sbjct: 100 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-IQ 158
Query: 76 DGRMLDGRELRVQMAR 91
++G V+ A
Sbjct: 159 KYHTVNGHNCEVRKAL 174
Score = 45.8 bits (107), Expect = 3e-07
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
+ L++ TT + LR FE+ G + D + RD T+ SRGF FV + + + A++A
Sbjct: 11 IGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPH 70
Query: 78 RM 79
++
Sbjct: 71 KV 72
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 59.3 bits (143), Expect = 5e-13
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 2 SYGRPPPRIEGMVSLK--VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAF 59
S G + EG + +L DL ++F G V + D+ T S+ F F
Sbjct: 5 SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF 64
Query: 60 VRFFDKRDAEDALDAMDGRMLDGRELRVQMAR 91
V + + A+ A+ +M+G + + L+VQ+ R
Sbjct: 65 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 96
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 58.5 bits (141), Expect = 7e-13
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDK 65
P R G+ ++ + NL L F G + + D S+G+ FV F +
Sbjct: 1 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQ 58
Query: 66 RDAEDALDAMDGRMLDGRELRVQMAR 91
AE A++ M+G +L+ R++ V +
Sbjct: 59 EAAERAIEKMNGMLLNDRKVFVGRFK 84
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 58.9 bits (142), Expect = 8e-13
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFD 64
R E L + L++ TT + LR +E+ G++ D + RD ++ SRGF FV F
Sbjct: 12 RKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 71
Query: 65 KRDAEDALDAMDGRMLDGRELRVQMAR 91
+ + A+ A +DGR + + A
Sbjct: 72 MAEVDAAM-AARPHSIDGRVVEPKRAV 97
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 59.5 bits (143), Expect = 1e-12
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFF 63
+ P + + +L V+ + LR++FER G + + I DR TR+SRG+ FV+F
Sbjct: 33 TQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQ 92
Query: 64 DKRDAEDALDAMDGRMLDGRELRVQMARYGRP-PSSSRSRGGRD 106
A+ A+ ++G + + L+V +A G P + + G +
Sbjct: 93 SGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPGIAGAVGDGN 136
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 58.2 bits (140), Expect = 1e-12
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
V L Y TT LR+ FE G++ + + DR T +SRG+ FV D+ AE A +
Sbjct: 15 VGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 74
Query: 78 RMLDGRELRVQMARYGRPPSSSRS 101
++DGR+ V +A G P S ++
Sbjct: 75 -IIDGRKANVNLAYLGAKPRSLQT 97
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 57.7 bits (139), Expect = 2e-12
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
+ L++ TT + LR FE+ G + D + RD T+ SRGF FV + + + A++
Sbjct: 11 IGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARP 69
Query: 78 RMLDGRELRVQMA 90
+DGR + + A
Sbjct: 70 HKVDGRVVEPKRA 82
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 57.8 bits (139), Expect = 2e-12
Identities = 33/88 (37%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRD 67
P + V NL D+ VF + G + DI + R FAFV F D RD
Sbjct: 9 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGP---PFAFVEFEDPRD 65
Query: 68 AEDALDAMDGRMLDGRELRVQMARYGRP 95
AEDA+ DG DG LRV+ R GR
Sbjct: 66 AEDAVYGRDGYDYDGYRLRVEFPRSGRG 93
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 58.1 bits (140), Expect = 2e-12
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 20/109 (18%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
V+NL Y T D L ++F + G V I FT+ ++ A +++ D A+ A ++DG
Sbjct: 12 VENLFYPVTLDVLHQIFSKFGTVLKIIT----FTKNNQFQALLQYADPVSAQHAKLSLDG 67
Query: 78 RML--DGRELRVQMARYGRPPSSSRSRGGRDRDRRRDRSRSRDRRYTRS 124
+ + LR+ ++ + + + +SRD YTR
Sbjct: 68 QNIYNACCTLRIDFSKL------------TSLNVKYNNDKSRD--YTRP 102
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 56.7 bits (136), Expect = 3e-12
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
+ L TT DL ++ + G++ D+ T + +G+ FV F A+ A+ A+
Sbjct: 3 IRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA 62
Query: 78 RMLDGRELR 86
+ + +
Sbjct: 63 SGVQAQMAK 71
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 56.6 bits (136), Expect = 4e-12
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
+L V NL+ T + ++F + G + + + + FV F++ RDA AL A
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALAA 67
Query: 75 MDGRMLDGRELRVQMARYGRPPSSSR 100
M+GR + G+E++V A PSS +
Sbjct: 68 MNGRKILGKEVKVNWA---TTPSSQK 90
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 55.9 bits (134), Expect = 6e-12
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
V + T LR FE+ G++ I I DR + + RGFAFV F D D+ D +
Sbjct: 7 VGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD-HDSVDKIVIQKY 65
Query: 78 RMLDGRELRVQMA 90
++G V+ A
Sbjct: 66 HTVNGHNCEVRKA 78
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 56.2 bits (135), Expect = 6e-12
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 15 SLKVDNLTYRTTPDDLRR-VFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73
++ ++NL + D+L++ + G I + + RG AFV F + A +AL
Sbjct: 5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 64
Query: 74 AMDGRMLDGRELRVQMAR 91
+M G + +R+Q A+
Sbjct: 65 SMQGFPFYDKPMRIQYAK 82
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 55.9 bits (134), Expect = 7e-12
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
V L++ T L +VF + G++ ++ + +DR T+ SRGF FV F + DA+DA+ AM+G
Sbjct: 10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69
Query: 78 RMLDGRELRVQMARYGRPPSSSRS 101
+ +DGR++RV A S +RS
Sbjct: 70 KSVDGRQIRVDQA---GKSSDNRS 90
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 55.8 bits (134), Expect = 1e-11
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
L V N+ +R DLR++F + G++ D+ I + S+GF FV F + DA+ A + +
Sbjct: 14 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKL 71
Query: 76 DGRMLDGRELRVQMAR 91
G +++GR++ V A
Sbjct: 72 HGTVVEGRKIEVNNAT 87
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 55.0 bits (132), Expect = 2e-11
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDK 65
++ +L NL++ T D+L+ VFE + I +S+G A++ F +
Sbjct: 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSE 63
Query: 66 RDAEDALDAMDGRMLDGRELRVQMAR 91
DAE L+ G +DGR + +
Sbjct: 64 ADAEKNLEEKQGAEIDGRSVSLYYTG 89
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 54.6 bits (131), Expect = 2e-11
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
L V NL T+ + + + F ++ R +AFV F ++ DA +A+ A+
Sbjct: 11 LYVRNLMLSTSEEMIEKEFNNIKPG------AVERVKKIRDYAFVHFSNREDAVEAMKAL 64
Query: 76 DGRMLDGRELRVQMAR 91
+G++LDG + V +A+
Sbjct: 65 NGKVLDGSPIEVTLAK 80
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 55.1 bits (132), Expect = 2e-11
Identities = 27/90 (30%), Positives = 43/90 (47%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
S+ V N+ Y T + L+ +F G V + DR T + +G+ F + D+ A A+
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 75 MDGRMLDGRELRVQMARYGRPPSSSRSRGG 104
++GR GR LRV A + +S G
Sbjct: 70 LNGREFSGRALRVDNAASEKNKEELKSLGT 99
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 54.3 bits (130), Expect = 4e-11
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
++ L R P DL F G+V D+ I DR +R S+G A+V F + + A+
Sbjct: 20 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-G 78
Query: 75 MDGRMLDGRELRVQMAR 91
+ G+ L G + VQ ++
Sbjct: 79 LTGQRLLGVPIIVQASQ 95
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 54.0 bits (129), Expect = 5e-11
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKR 66
P + ++ + NL++ + + L V ++ G++ + + T S+G AF +F +
Sbjct: 2 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 61
Query: 67 DAEDALDAM------DGRMLDGRELRVQMAR 91
A+ L A G LDGR+L+V +A
Sbjct: 62 AAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 92
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 53.6 bits (128), Expect = 9e-11
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 12 GMVSLKVDNL-TYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAED 70
G L V NL R TP L +F G+V + I ++ A V+ D A+
Sbjct: 1 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE-----NALVQMADGNQAQL 55
Query: 71 ALDAMDGRMLDGRELRVQMARYGRPPSSSRSRGGRDRDRRRDRSRSRDRRYTRSRS 126
A+ ++G L G+ +R+ ++++ G D+ +D S R+ + S
Sbjct: 56 AMSHLNGHKLHGKPIRITLSKHQNVQLP--REGQEDQGLTKDYGNSPLHRFKKPGS 109
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 53.1 bits (127), Expect = 1e-10
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
+ V T T D+LR F + G+V D+ + R FAFV F D + A+
Sbjct: 7 GVFVGRCTGDMTEDELREFFSQYGDVMDV-----FIPKPFRAFAFVTFADDQIAQSLC-- 59
Query: 75 MDGRMLDGRELRVQMARYGRPPSSSRSRG 103
+ ++ G + + A +S S G
Sbjct: 60 GEDLIIKGISVHISNAEPKHNSNSGPSSG 88
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 52.8 bits (126), Expect = 1e-10
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDAL 72
M L + NL+ T DDLR++F + G+AFV + D+ A A+
Sbjct: 1 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKS------GYAFVDYPDQNWAIRAI 54
Query: 73 DAMDGRM-LDGRELRVQMARYGRPPSSSRS 101
+ + G++ L G+ + V + RS
Sbjct: 55 ETLSGKVELHGKIMEVDYSV----SKKLRS 80
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 52.8 bits (126), Expect = 1e-10
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPR-----DRFTRESRGFAFVRFFDKRDAEDAL 72
V N+ + T + + F +G + + + FAF+ F + A+
Sbjct: 6 VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM 65
Query: 73 DAMDGRMLDGRELRVQMARYGRPP 96
DG + G+ L+++ +P
Sbjct: 66 A-FDGIIFQGQSLKIRRPHDYQPL 88
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 52.3 bits (125), Expect = 2e-10
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 23 YRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDG 82
TP LR F G + D+ + R AFV + A+ A+ ++G ++
Sbjct: 13 EDMTPTLLRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESADQAVAELNGTQVES 66
Query: 83 RELRVQMAR 91
+L+V +AR
Sbjct: 67 VQLKVNIAR 75
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 52.0 bits (124), Expect = 3e-10
Identities = 13/69 (18%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 20 NLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGR- 78
L + + L V E+CG V + +P ++ ++F R+ +++ A ++G+
Sbjct: 27 GLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARYRTTEESKRAYVTLNGKE 80
Query: 79 MLDGRELRV 87
++D ++
Sbjct: 81 VVDDLGQKI 89
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 51.7 bits (123), Expect = 6e-10
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
+ NL Y T + ++ F +GF + F D AL +++
Sbjct: 20 LGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE 78
Query: 78 RMLDGRELRVQMARYGRPPSSSRSRG 103
L + +RV +A + S S G
Sbjct: 79 ESLGNKRIRVDVADQAQDKDSGPSSG 104
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 50.6 bits (120), Expect = 6e-10
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
++ V NL + + + F+ CG + + + FA + F A A+
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKN--FRFARIEFARYDGALAAI-T 58
Query: 75 MDGRMLDGRELRVQMA 90
+++ E+ V
Sbjct: 59 KTHKVVGQNEIIVSHL 74
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 50.9 bits (121), Expect = 7e-10
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDA 71
G + V NL + ++ + + + + ++ AFV + A++A
Sbjct: 4 GSSGILVKNLPQDSNCQEVHDLLKDYD-------LKYCYVDRNKRTAFVTLLNGEQAQNA 56
Query: 72 LDAMDGRMLDGRELRVQMARYGRPPSSSRSRG 103
+ G++L VQ+ S S G
Sbjct: 57 IQMFHQYSFRGKDLIVQLQPTDALLCSGPSSG 88
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 50.9 bits (121), Expect = 9e-10
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
L + NL+ R T DL +F R E I T RG AF+ F +K A AL +
Sbjct: 21 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 80
Query: 76 DGRMLDGRELRVQMAR 91
+G L G+ L ++ +
Sbjct: 81 NGYKLYGKILVIEFGK 96
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 50.2 bits (119), Expect = 1e-09
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVG---DIYIPRDRFTRES---RGFAFVRFFDKRDAEDA 71
V L+ R ++ + E G+ G + I S A+V + DA A
Sbjct: 13 VVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRA 72
Query: 72 LDAMDGRMLDGRELRV 87
+ ++ ++DGR L+
Sbjct: 73 IQCVNNVVVDGRTLKA 88
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 50.2 bits (119), Expect = 2e-09
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
+L + NL +L + + G+V + SRG F R E +
Sbjct: 20 NLYISNLPLSMDEQELENMLKPFGQV-ISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 78
Query: 75 MDGRMLDGRELRVQMAR 91
+G+ +
Sbjct: 79 FNGKFIKTPPGVSAPTE 95
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 49.8 bits (118), Expect = 3e-09
Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 13/93 (13%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
D + T +F + + + F + A DA +
Sbjct: 13 ANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRL 66
Query: 76 DGRMLDGRELRVQMAR-------YGRPPSSSRS 101
G+E+++ A+ + PP+ +S
Sbjct: 67 HKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKS 99
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 49.3 bits (117), Expect = 3e-09
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ YG+ P L V L T+ L R F+R G + I + FA++
Sbjct: 9 IGYGKANPT----TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS------FAYI 58
Query: 61 RFFDKRDAEDALDAMDGRMLDGRELRVQMARYGRPPSSS 99
++ A+ A M G L G + R+++ + + SS
Sbjct: 59 QYESLDAAQAACAKMRGFPLGGPDRRLRV-DFAKSGPSS 96
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 47.4 bits (112), Expect = 1e-08
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
S+ + T DD++ E G+V + R + +G FV F A+ +
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLN-IQMRRTLHKAFKGSIFVVFDSIESAKKFV-E 65
Query: 75 MDGRMLDGRELRVQMA 90
G+ +L +
Sbjct: 66 TPGQKYKETDLLILFK 81
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 47.9 bits (113), Expect = 1e-08
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
S G P +++ L + + +++ + F V + F S G AFV+
Sbjct: 5 SSGNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQ 63
Query: 62 FFDKRDAEDALDAMDGRMLDGRELRVQMARYGRPPSSSRSRG 103
F + AE AL + R + + + +S S G
Sbjct: 64 FASQEIAEKALK-KHKERIGHRYIEIFKSSRAEVRTSGPSSG 104
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 47.0 bits (111), Expect = 2e-08
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 15 SLKVDNLTYRTTPDDLRRVF--ERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDAL 72
+ + NL+ ++L R + + AF+ F +K AE AL
Sbjct: 6 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 65
Query: 73 DAMDGRMLDGRELRVQMAR 91
M+ +L RE+ V +A
Sbjct: 66 -QMNRSLLGNREISVSLAD 83
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 47.5 bits (112), Expect = 2e-08
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALD 73
V + N+ + T D+ + E + + G A V+F ++ DA +
Sbjct: 9 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSE- 67
Query: 74 AMDGRMLDGRELRV------QMARYGRPPSSSRSRG 103
+ + L+GRE V M + P + G
Sbjct: 68 RLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKSG 103
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 45.7 bits (107), Expect = 8e-08
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
+L + NL + +L+ D+ + R T +R F +V F D E AL+
Sbjct: 15 NLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYVDFESAEDLEKALE- 72
Query: 75 MDGRMLDGRELRVQMAR 91
+ G + G E++++ +
Sbjct: 73 LTGLKVFGNEIKLEKPK 89
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 45.5 bits (107), Expect = 8e-08
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDK 65
PP L + N+ + +DL+ +F G V + +F ++ R A ++
Sbjct: 8 PPSAT-----LHLSNIPPSVSEEDLKVLFSSNGGV----VKGFKFFQKDRKMALIQMGSV 58
Query: 66 RDAEDALDAMDGRML-DGRELRVQMAR 91
+A AL + L + LRV ++
Sbjct: 59 EEAVQALIDLHNHDLGENHHLRVSFSK 85
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 45.6 bits (107), Expect = 1e-07
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 11/91 (12%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMD- 76
V L DL E+ G + + + + A V F + A++ +
Sbjct: 20 VRGLCESVVEADLVEALEKFGTICYVMMMPFKR------QALVEFENIDSAKECVTFAAD 73
Query: 77 -GRMLDGRELRVQMARY---GRPPSSSRSRG 103
+ G++ + RP +S S G
Sbjct: 74 VPVYIAGQQAFFNYSTSKRITRPGNSGPSSG 104
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 45.2 bits (106), Expect = 1e-07
Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 8/102 (7%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
S G PP R + V L + DL+ G+V + +D V
Sbjct: 5 SSGGPPTRRSDF-RVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGM-------GMVE 56
Query: 62 FFDKRDAEDALDAMDGRMLDGRELRVQMARYGRPPSSSRSRG 103
+ K D E AL +D E R SS S G
Sbjct: 57 YLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSSGPSSG 98
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 42.9 bits (100), Expect = 6e-07
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDK 65
PP +I L + NL T L +F + ++ + +R AFV F +
Sbjct: 6 PPNQI-----LFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHD-----IAFVEFTTE 55
Query: 66 RDAEDALDAMDGRMLD-GRELRVQMAR 91
+ A +A+ G + +++ A+
Sbjct: 56 LQSNAAKEALQGFKITPTHAMKITFAK 82
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 42.6 bits (99), Expect = 8e-07
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
+ L T ++ + + F + +G AFV + AE A++
Sbjct: 3 IRGLPGDVTNQEVHDLLSDY-------ELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQ 55
Query: 78 RMLDGRELRVQMAR 91
L REL VQ+
Sbjct: 56 SRLRERELSVQLQP 69
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 39.8 bits (92), Expect = 1e-05
Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 13/89 (14%)
Query: 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDK 65
P R+ L + L T ++ + + + + AF+ +
Sbjct: 6 APSRV-----LHIRKLPGEVTETEVIALGLPF------GKVTNILMLKGKNQAFLELATE 54
Query: 66 RDAEDALDAM--DGRMLDGRELRVQMARY 92
A ++ L + + +Q + +
Sbjct: 55 EAAITMVNYYSAVTPHLRNQPIYIQYSNH 83
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 39.5 bits (92), Expect = 1e-05
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 8/66 (12%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
V + + F + G + + + +R+ K A AL + DG
Sbjct: 9 VFGFPQASA-SYILLQFAQYGNILKHVMSNTG------NWMHIRYQSKLQARKAL-SKDG 60
Query: 78 RMLDGR 83
R+
Sbjct: 61 RIFGES 66
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 39.8 bits (92), Expect = 2e-05
Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 8/111 (7%)
Query: 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKR-DAE 69
G + +L +T +DL +F GE+ I R + F +K +A
Sbjct: 9 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG------AKEGIILFKEKAKEAL 62
Query: 70 DALDAMDGRMLDGRELRVQ-MARYGRPPSSSRSRGGRDRDRRRDRSRSRDR 119
+ L R V G + + D+ ++ +S+ R
Sbjct: 63 GKAKDANNGNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKWKSKGR 113
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 39.0 bits (90), Expect = 3e-05
Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 3/89 (3%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA 74
+ + L YR T +D+ F + G A V F DA A+ A
Sbjct: 17 CVHMRGLPYRATENDIYNFFSPLNPMRVHIE--IGPDGRVTGEADVEFATHEDAVAAM-A 73
Query: 75 MDGRMLDGRELRVQMARYGRPPSSSRSRG 103
D + R + + + S S G
Sbjct: 74 KDKANMQHRYVELFLNSTAGTSGSGPSSG 102
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 37.6 bits (86), Expect = 8e-05
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDG 77
NL T +++ F R G +G + +P A V F + +A A +
Sbjct: 15 AKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG------ITAIVEFLEPLEARKAFRHLAY 68
Query: 78 RMLDGRELRVQMARYGRPPSSSRSRGGRDRDRRRDR 113
L ++ A G ++ + + +
Sbjct: 69 SKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKA 104
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 35.4 bits (81), Expect = 4e-04
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 25 TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDA--MDGRMLDG 82
L ++ E G + + I AF+ DA+ A+D ++ G
Sbjct: 21 NLRYQLLQLVEPFGVISNHLILNKIN------EAFIEMATTEDAQAAVDYYTTTPALVFG 74
Query: 83 RELRVQMAR 91
+ +RV +++
Sbjct: 75 KPVRVHLSQ 83
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 35.2 bits (80), Expect = 6e-04
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 1/87 (1%)
Query: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFF 63
R E + + L + + F++ V D ++ G FV F
Sbjct: 9 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR 68
Query: 64 DKRDAEDALDAMDGRMLDGRELRVQMA 90
++ D + AL + + R ++V
Sbjct: 69 NEADYKAAL-CRHKQYMGNRFIQVHPI 94
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 34.5 bits (78), Expect = 0.001
Identities = 22/91 (24%), Positives = 29/91 (31%), Gaps = 11/91 (12%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAM 75
+ V L + DL+ G+V + RD V F K D A+ +
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTG-------VVEFVRKEDMTYAVRKL 55
Query: 76 DGRMLDGRELRVQMAR----YGRPPSSSRSR 102
D E R R PS RSR
Sbjct: 56 DNTKFRSHEGETAYIRVKVDGPRSPSYGRSR 86
>d1jyaa_ d.198.1.1 (A:) YopE chaperone SycE {Yersinia pestis
[TaxId: 632]}
Length = 117
Score = 27.5 bits (61), Expect = 0.41
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 7 PPRIEGMVSLKVDNLTYRTTP 27
P IE ++ +KV T
Sbjct: 19 PDTIEPVIGVKVGEFACHITE 39
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 26.5 bits (57), Expect = 0.75
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 22 TYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALD--AMDGRM 79
+ + ++ E G++ + + R + AF+ + DA +D
Sbjct: 28 HSGYSDSAVLKLAEPYGKIKNYILMRMK------SQAFIEMETREDAMAMVDHCLKKALW 81
Query: 80 LDGRELRVQMAR 91
GR ++V ++
Sbjct: 82 FQGRCVKVDLSE 93
>d3c8wa1 d.347.1.1 (A:5-254) Acetoacetate decarboxylase
{Legionella pneumophila [TaxId: 446]}
Length = 250
Score = 26.4 bits (58), Expect = 1.5
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD 42
+Y P R + Y T PD L+ + E+ +
Sbjct: 23 NTYPAGPYRFINREFFII---AYETDPDLLQAILPPDMELLE 61
>d3cmba1 d.347.1.1 (A:1-264) Acetoacetate decarboxylase
{Methanoculleus marisnigri [TaxId: 2198]}
Length = 264
Score = 24.5 bits (53), Expect = 7.2
Identities = 4/34 (11%), Positives = 10/34 (29%), Gaps = 3/34 (8%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVF 34
+ + +L + ++ T D L
Sbjct: 19 GKFDPETLVTQKATALSL---SFETERDLLENYI 49
>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId:
8010]}
Length = 109
Score = 23.7 bits (51), Expect = 8.9
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 26 TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV-RFFDKRDAEDALDAMD 76
+ +D+++VF+ +I + + FA R + + L A D
Sbjct: 39 SANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAAD 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.396
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 592,169
Number of extensions: 27170
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 98
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.0 bits)