BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7053
(65 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes
GN=SRSF2 PE=2 SV=3
Length = 221
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MSYGRPPP +EGM SLKVDNLTYRT+PD LRRVFE+ G VGD+YIPRDR+T+ESRGFAFV
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 60
Query: 61 RL 62
R
Sbjct: 61 RF 62
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MSYGRPPP +EGM SLKVDNLTYRT+PD LRRVFE+ G VGD+YIPRDR+T+ESRGFAFV
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 60
Query: 61 RL 62
R
Sbjct: 61 RF 62
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2
PE=2 SV=1
Length = 221
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MSYGRPPP +EGM SLKVDNLTYRT+PD LRRVFE+ G VGD+YIPRDR+T+ESRGFAFV
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 60
Query: 61 RL 62
R
Sbjct: 61 RF 62
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MSYGRPPP +EGM SLKVDNLTYRT+PD LRRVFE+ G VGD+YIPRDR+T+ESRGFAFV
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 60
Query: 61 RL 62
R
Sbjct: 61 RF 62
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MSYGRPPP +EGM SLKVDNLTYRT+PD LRRVFE+ G VGD+YIPRDR+T+ESRGFAFV
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 60
Query: 61 RL 62
R
Sbjct: 61 RF 62
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MSYGRPPP +EGM SLKVDNLTYRT+PD LRRVFE+ G VGD+YIPRDR+T+ESRGFAFV
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 60
Query: 61 RL 62
R
Sbjct: 61 RF 62
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2
PE=2 SV=3
Length = 221
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MSYGRPPP +EGM SLKVDNLTYRT+PD LRRVFE+ G VGD+YIPRDR+T+ESRGFAFV
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 60
Query: 61 RL 62
R
Sbjct: 61 RF 62
>sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8
PE=1 SV=1
Length = 282
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 52/62 (83%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MS GRPPP ++GM++LKVDNLTYRT+PD LRRVFE+ G VGD+YIPR+ T+ RGFAFV
Sbjct: 1 MSCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFV 60
Query: 61 RL 62
R
Sbjct: 61 RF 62
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4
OS=Caenorhabditis elegans GN=rsp-4 PE=3 SV=1
Length = 196
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 49/58 (84%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
R P I G+ SLK+DNL+Y+TTP+DLRR FER G++GD++IPRD+++R+S+GF FVR
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRF 67
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 3 YGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
Y RPP SL + N+ T P+DLRR F R G + D+YIP D +TR RGFA+V+
Sbjct: 4 YTRPPN-----TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQF 58
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLL 63
SL V NL + +DLR+ FE+ G V DIY+PRD +T + RGF FV+ +
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFM 85
>sp|Q6C747|EIF3G_YARLI Eukaryotic translation initiation factor 3 subunit G OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TIF35 PE=3 SV=1
Length = 294
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64
++L+V NL+ T DDLRR+F + G + +Y+ +DR T RGFAFV L
Sbjct: 214 LTLRVTNLSEEATDDDLRRMFGKYGMINRVYVAKDRDTGRPRGFAFVTYTL 264
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64
V NL+Y T +DL +VF + G++ +I+IP D +++S+G AF+ L+
Sbjct: 365 VRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLI 411
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLL 63
+ NL + +T ++R++F GE+ + IP+ + RGF FV L
Sbjct: 799 IKNLPFESTIKEIRKLFTAYGEIQSVRIPK-KPNGGHRGFGFVEFL 843
>sp|Q44556|RBPD_NOSS1 Putative RNA-binding protein RbpD OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpD PE=3 SV=3
Length = 94
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
+++ V NL+YR T DL+ VF GEV + +P DR T RGFAFV +
Sbjct: 1 MTIYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEM 49
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
+S+ V NL+Y T DDL +VF G V + +P DR T RGF FV +
Sbjct: 1 MSIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEM 49
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
G P E + L + L++ TT D LR FE+ G++ D + RD T+ SRGF FV
Sbjct: 17 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFV 73
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
G P E + L + L++ TT D LR FE+ G++ D + RD T+ SRGF FV
Sbjct: 17 GHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFV 73
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 3 YGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
Y RPP SL V N+ T +DLRR F R G + D+Y+P D +TR RGFA+V+
Sbjct: 4 YLRPP-----NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 58
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 3 YGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
Y RPP SL V N+ T +DLRR F R G + D+Y+P D +TR RGFA+V+
Sbjct: 4 YLRPP-----NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 58
>sp|A7SKE9|EIF3G_NEMVE Eukaryotic translation initiation factor 3 subunit G
OS=Nematostella vectensis GN=v1g171563 PE=3 SV=1
Length = 294
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLL 63
+++V NL+ T DL+ +F G + I++ +D+FT +S+GFAF+ +
Sbjct: 213 TIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFV 261
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MS P E + L + L++ TT + LR FE+ G + D + RD T+ SRGF FV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 25 TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
T LR FE+ G++ I I DR + + RGFAFV
Sbjct: 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MS P E + L + L++ TT + LR FE+ G + D + RD T+ SRGF FV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 25 TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
T LR FE+ G++ I I DR + + RGFAFV
Sbjct: 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus
GN=HNRNPA1 PE=1 SV=2
Length = 320
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MS P E + L + L++ TT + LR FE+ G + D + RD T+ SRGF FV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 25 TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
T LR FE+ G++ I I DR + + RGFAFV
Sbjct: 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64
L V NL Y +T +DL ++F + G + +++ P D T++ +GFAF+ +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMF 452
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MS P E + L + L++ TT + LR FE+ G + D + RD T+ SRGF FV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 25 TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
T LR FE+ G++ I I DR + + RGFAFV
Sbjct: 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MS P E + L + L++ TT + LR FE+ G + D + RD T+ SRGF FV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 25 TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
T LR FE+ G++ I I DR + + RGFAFV
Sbjct: 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
>sp|Q9WX39|RBPF_NOSS1 Putative RNA-binding protein RbpF OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpF PE=3 SV=3
Length = 105
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
+S+ V NL+Y T +D+ VF G V + +P DR T RGFAFV +
Sbjct: 1 MSIYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEM 49
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MS P E + L + L++ TT + LR FE+ G + D + RD T+ SRGF FV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 25 TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
T LR FE+ G++ I I DR + + RGFAFV
Sbjct: 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MS P E + L + L++ TT + LR FE+ G + D + RD T+ SRGF FV
Sbjct: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 25 TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
T LR FE+ G++ I I DR + + RGFAFV
Sbjct: 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
>sp|Q44560|RBPA_NOSS1 Putative RNA-binding protein RbpA OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpA PE=3 SV=3
Length = 102
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
+S+ V NL+Y T D L VF G V + +P DR T + RGF FV +
Sbjct: 1 MSIYVGNLSYEVTQDTLSAVFAEYGTVKRVQLPTDRETGQPRGFGFVEM 49
>sp|Q641B2|EI3GB_XENLA Eukaryotic translation initiation factor 3 subunit G-B OS=Xenopus
laevis GN=eif3g-b PE=2 SV=1
Length = 308
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+P R + +++V NL+ T DL+ +F G + IY+ +D+ T +S+GFAF+
Sbjct: 218 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 273
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
S+ V N+ Y TP++L+ F CG V + I D+FT +GFA++
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIE 102
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
P E + L + L++ TT D LR FE+ G + D + RD T+ SRGF FV
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFV 81
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 29 DLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+LR FE+ G++ I + DR + + RGFAFV
Sbjct: 141 NLRDYFEKYGKIETIEVMEDRQSGKKRGFAFV 172
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
P E + L + L++ TT D LR FE+ G + D + RD T+ SRGF FV
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFV 81
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 29 DLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+LR FE+ G++ I + DR + + RGFAFV
Sbjct: 141 NLRDYFEKYGKIETIEVMEDRQSGKKRGFAFV 172
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
P E + L + L++ TT D LR FE+ G + D + RD T+ SRGF FV
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFV 81
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 29 DLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+LR FE+ G++ I + DR + + RGFAFV
Sbjct: 141 NLRDYFEKYGKIETIEVMEDRQSGKKRGFAFV 172
>sp|Q28CY2|EIF3G_XENTR Eukaryotic translation initiation factor 3 subunit G OS=Xenopus
tropicalis GN=eif3g PE=2 SV=1
Length = 310
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+P R + +++V NL+ T DL+ +F G + IY+ +D+ T +S+GFAF+
Sbjct: 220 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 275
>sp|O75821|EIF3G_HUMAN Eukaryotic translation initiation factor 3 subunit G OS=Homo
sapiens GN=EIF3G PE=1 SV=2
Length = 320
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+P R + +++V NL+ T DL+ +F G + IY+ +D+ T +S+GFAF+
Sbjct: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 285
>sp|Q4X1I3|EIF3G_ASPFU Eukaryotic translation initiation factor 3 subunit G OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=tif35 PE=3 SV=1
Length = 290
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ + +L+V N++ +LR +FER G V +++ RDR T+ ++GFAF+
Sbjct: 207 DDLATLRVTNVSELAEESELRDLFERFGRVTRVFLARDRETQRAKGFAFI 256
>sp|B0XS28|EIF3G_ASPFC Eukaryotic translation initiation factor 3 subunit G OS=Neosartorya
fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
GN=tif35 PE=3 SV=1
Length = 290
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ + +L+V N++ +LR +FER G V +++ RDR T+ ++GFAF+
Sbjct: 207 DDLATLRVTNVSELAEESELRDLFERFGRVTRVFLARDRETQRAKGFAFI 256
>sp|Q3ZC12|EIF3G_BOVIN Eukaryotic translation initiation factor 3 subunit G OS=Bos taurus
GN=EIF3G PE=2 SV=1
Length = 320
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+P R + +++V NL+ T DL+ +F G + IY+ +D+ T +S+GFAF+
Sbjct: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 285
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
E M L + L YRTT ++L+ FE+ G + D+ + +D T+ SRGF F+
Sbjct: 28 EHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFI 77
>sp|Q5RK09|EIF3G_RAT Eukaryotic translation initiation factor 3 subunit G OS=Rattus
norvegicus GN=Eif3g PE=2 SV=1
Length = 320
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+P R + +++V NL+ T DL+ +F G + IY+ +D+ T +S+GFAF+
Sbjct: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 285
>sp|Q9Z1D1|EIF3G_MOUSE Eukaryotic translation initiation factor 3 subunit G OS=Mus
musculus GN=Eif3g PE=1 SV=2
Length = 320
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+P R + +++V NL+ T DL+ +F G + IY+ +D+ T +S+GFAF+
Sbjct: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 285
>sp|Q2U002|EIF3G_ASPOR Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=tif35 PE=3 SV=1
Length = 287
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ + +L+V N++ +LR +FER G V +++ RDR T+ ++GFAF+
Sbjct: 204 DDLATLRVTNVSELAEEGELRDLFERFGRVTRVFLARDRETQRAKGFAFI 253
>sp|Q0CPF9|EIF3G_ASPTN Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=tif35 PE=3
SV=1
Length = 286
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ + +L+V N++ +LR +FER G V +++ RDR T+ ++GFAF+
Sbjct: 203 DDLATLRVTNVSELAEEGELRDLFERFGRVTRVFLARDRETQRAKGFAFI 252
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
E + L + L YRTT + L++ FE+ GE+ D+ + +D T+ SRGF F+
Sbjct: 14 EHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFI 63
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 28 DDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
+DLR F++ G V I D+ TR+ RGFAFV
Sbjct: 122 NDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEF 156
>sp|A1DGS2|EIF3G_NEOFI Eukaryotic translation initiation factor 3 subunit G OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=TIF35 PE=3 SV=1
Length = 290
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ + +L+V N++ +LR +FER G V +++ RDR T+ ++GFAF+
Sbjct: 207 DDLATLRVTNVSELAEESELRDLFERFGRVTRVFLARDRETQRAKGFAFI 256
>sp|Q6DRC4|EIF3G_DANRE Eukaryotic translation initiation factor 3 subunit G OS=Danio rerio
GN=eif3g PE=1 SV=1
Length = 293
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+P R + +++V NL+ T DL+ +F G + IY+ +D+ T +S+GFAF+
Sbjct: 203 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGFAFI 258
>sp|Q6DJI8|EI3GA_XENLA Eukaryotic translation initiation factor 3 subunit G-A OS=Xenopus
laevis GN=eif3g-a PE=2 SV=1
Length = 308
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+P R + +++V NL+ T DL+ +F G + IY+ +D+ T +S+GFAF+
Sbjct: 218 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 273
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64
L V NL+Y ++ +DL ++F G + +++ P D T++ +GFAFV +
Sbjct: 402 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMF 450
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.148 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,881,104
Number of Sequences: 539616
Number of extensions: 828109
Number of successful extensions: 3070
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 2464
Number of HSP's gapped (non-prelim): 641
length of query: 65
length of database: 191,569,459
effective HSP length: 37
effective length of query: 28
effective length of database: 171,603,667
effective search space: 4804902676
effective search space used: 4804902676
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)