Query psy7053
Match_columns 65
No_of_seqs 103 out of 1329
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 16:55:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.7 4.1E-16 8.8E-21 82.1 7.7 54 11-64 32-85 (144)
2 KOG0149|consensus 99.7 4.6E-16 9.9E-21 86.4 6.0 51 14-64 13-63 (247)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 4.4E-15 9.5E-20 86.4 8.6 54 11-64 267-320 (352)
4 TIGR01659 sex-lethal sex-letha 99.6 6E-15 1.3E-19 86.5 8.4 56 9-64 103-158 (346)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 6.6E-15 1.4E-19 85.6 7.6 53 12-64 2-54 (352)
6 KOG4207|consensus 99.6 1E-14 2.2E-19 80.2 6.3 64 1-64 1-64 (256)
7 KOG0113|consensus 99.6 3E-14 6.5E-19 81.5 7.1 53 12-64 100-152 (335)
8 TIGR01659 sex-lethal sex-letha 99.5 4.8E-14 1E-18 82.8 7.4 54 11-64 191-244 (346)
9 TIGR01645 half-pint poly-U bin 99.5 4.9E-14 1.1E-18 87.2 7.3 53 12-64 106-158 (612)
10 TIGR01648 hnRNP-R-Q heterogene 99.5 7.6E-14 1.7E-18 86.0 8.1 54 10-64 55-108 (578)
11 KOG0126|consensus 99.5 6.5E-15 1.4E-19 79.6 2.1 56 9-64 31-86 (219)
12 KOG0122|consensus 99.5 7.5E-14 1.6E-18 78.1 6.3 55 10-64 186-240 (270)
13 PF00076 RRM_1: RNA recognitio 99.5 1.3E-13 2.9E-18 63.9 6.1 48 16-64 1-48 (70)
14 KOG0121|consensus 99.5 8.4E-14 1.8E-18 71.8 5.3 55 10-64 33-87 (153)
15 TIGR01622 SF-CC1 splicing fact 99.5 4.5E-13 9.8E-18 80.3 7.6 53 12-64 88-140 (457)
16 TIGR01645 half-pint poly-U bin 99.5 3.8E-13 8.1E-18 83.3 7.2 52 13-64 204-255 (612)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.4 8.8E-13 1.9E-17 79.8 8.1 54 11-64 293-346 (509)
18 PF14259 RRM_6: RNA recognitio 99.4 8.4E-13 1.8E-17 61.6 6.2 48 16-64 1-48 (70)
19 TIGR01628 PABP-1234 polyadenyl 99.4 7.5E-13 1.6E-17 81.2 7.2 51 14-64 1-51 (562)
20 PLN03120 nucleic acid binding 99.4 1.4E-12 2.9E-17 73.9 7.0 49 13-64 4-52 (260)
21 PLN03213 repressor of silencin 99.4 1.9E-12 4.2E-17 78.7 6.9 50 11-64 8-57 (759)
22 KOG0117|consensus 99.4 3.1E-12 6.6E-17 76.5 6.9 55 10-64 80-134 (506)
23 PLN03121 nucleic acid binding 99.4 4.4E-12 9.4E-17 71.2 6.8 51 11-64 3-53 (243)
24 TIGR01622 SF-CC1 splicing fact 99.4 4.1E-12 8.8E-17 76.2 7.1 52 13-64 186-237 (457)
25 COG0724 RNA-binding proteins ( 99.4 8.9E-12 1.9E-16 68.9 7.6 52 13-64 115-166 (306)
26 KOG0131|consensus 99.3 2E-12 4.3E-17 69.9 4.7 56 9-64 5-60 (203)
27 KOG0124|consensus 99.3 1E-12 2.3E-17 77.4 3.3 53 13-65 113-165 (544)
28 KOG0145|consensus 99.3 8.7E-13 1.9E-17 74.9 2.6 63 2-64 116-178 (360)
29 TIGR01628 PABP-1234 polyadenyl 99.3 1E-11 2.2E-16 76.3 7.3 53 11-64 283-335 (562)
30 KOG0144|consensus 99.3 5.3E-12 1.2E-16 75.3 5.8 54 11-64 32-85 (510)
31 KOG0111|consensus 99.3 1.7E-12 3.7E-17 72.3 2.8 55 10-64 7-61 (298)
32 KOG0130|consensus 99.3 6.3E-12 1.4E-16 65.5 4.5 60 6-65 65-124 (170)
33 KOG0125|consensus 99.3 1.1E-11 2.4E-16 71.9 5.9 54 9-64 92-145 (376)
34 KOG4205|consensus 99.3 1.4E-11 3E-16 71.5 5.4 53 12-64 5-57 (311)
35 smart00362 RRM_2 RNA recogniti 99.3 4.7E-11 1E-15 54.7 6.2 48 15-64 1-48 (72)
36 KOG0127|consensus 99.3 2.8E-11 6.1E-16 74.0 6.7 53 12-64 291-343 (678)
37 KOG0148|consensus 99.3 1.8E-11 3.9E-16 69.7 5.2 52 13-64 62-113 (321)
38 KOG0108|consensus 99.2 2.6E-11 5.6E-16 73.0 5.2 51 14-64 19-69 (435)
39 smart00360 RRM RNA recognition 99.2 9.2E-11 2E-15 53.5 5.6 47 18-64 1-47 (71)
40 KOG0107|consensus 99.2 5E-11 1.1E-15 64.3 5.3 50 11-65 8-57 (195)
41 KOG0124|consensus 99.2 9.5E-11 2.1E-15 69.3 6.0 51 14-64 211-261 (544)
42 KOG0144|consensus 99.2 1.9E-11 4.1E-16 73.1 2.4 51 13-64 124-174 (510)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 2.1E-10 4.6E-15 69.7 6.4 46 13-64 2-47 (481)
44 cd00590 RRM RRM (RNA recogniti 99.1 8.5E-10 1.8E-14 50.6 6.5 49 15-64 1-49 (74)
45 KOG0148|consensus 99.1 5.7E-10 1.2E-14 63.7 6.1 50 9-64 160-209 (321)
46 KOG0114|consensus 99.1 1.2E-09 2.7E-14 54.8 6.5 52 10-64 15-66 (124)
47 KOG0105|consensus 99.1 5.3E-10 1.1E-14 61.1 5.4 52 11-65 4-55 (241)
48 KOG0127|consensus 99.0 7.2E-10 1.6E-14 68.1 5.3 51 13-63 5-55 (678)
49 KOG0146|consensus 99.0 3.8E-10 8.3E-15 64.6 3.8 55 9-64 15-69 (371)
50 KOG0147|consensus 99.0 2.4E-10 5.1E-15 69.7 3.0 50 15-64 280-329 (549)
51 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 3.2E-09 7E-14 64.7 7.6 48 12-64 274-322 (481)
52 PF04059 RRM_2: RNA recognitio 99.0 3.9E-09 8.5E-14 52.4 5.7 51 14-64 2-54 (97)
53 KOG4208|consensus 99.0 3.9E-09 8.4E-14 58.2 6.1 54 11-64 47-101 (214)
54 KOG0146|consensus 98.9 2.7E-09 5.9E-14 61.2 5.2 57 8-64 280-336 (371)
55 KOG0145|consensus 98.9 7.2E-09 1.6E-13 59.3 6.7 57 8-64 273-329 (360)
56 TIGR01642 U2AF_lg U2 snRNP aux 98.9 8E-09 1.7E-13 62.8 6.5 48 11-64 173-232 (509)
57 TIGR01648 hnRNP-R-Q heterogene 98.9 9.2E-09 2E-13 64.0 6.4 44 13-64 233-278 (578)
58 KOG0131|consensus 98.9 2.8E-09 6E-14 57.9 3.2 55 10-64 93-148 (203)
59 KOG4205|consensus 98.8 2.6E-08 5.6E-13 58.1 6.4 52 13-64 97-148 (311)
60 KOG0415|consensus 98.8 8.3E-09 1.8E-13 61.0 3.8 51 14-64 240-290 (479)
61 KOG0110|consensus 98.7 1.2E-08 2.7E-13 63.9 3.8 53 13-65 613-665 (725)
62 KOG4212|consensus 98.7 5.8E-08 1.2E-12 58.9 6.3 50 14-64 45-95 (608)
63 KOG0123|consensus 98.7 3.8E-08 8.2E-13 58.6 5.2 47 15-64 78-124 (369)
64 KOG0117|consensus 98.7 7.1E-08 1.5E-12 58.3 6.0 53 12-64 163-217 (506)
65 KOG0116|consensus 98.7 7.1E-08 1.5E-12 58.2 5.7 52 13-64 288-339 (419)
66 smart00361 RRM_1 RNA recogniti 98.7 1.1E-07 2.4E-12 44.5 4.8 38 27-64 2-46 (70)
67 KOG0109|consensus 98.6 4.5E-08 9.8E-13 56.6 4.0 42 14-63 3-44 (346)
68 KOG4209|consensus 98.6 7.1E-08 1.5E-12 54.4 3.3 56 9-64 97-152 (231)
69 KOG0123|consensus 98.5 3.4E-07 7.4E-12 54.6 5.2 54 10-64 267-320 (369)
70 KOG4206|consensus 98.5 1E-06 2.3E-11 49.2 6.2 48 14-64 10-61 (221)
71 KOG0226|consensus 98.4 2.3E-07 4.9E-12 52.9 3.2 55 10-64 187-241 (290)
72 KOG0153|consensus 98.4 1.3E-06 2.8E-11 51.6 5.0 51 8-64 223-273 (377)
73 KOG0132|consensus 98.3 1.5E-06 3.2E-11 55.7 4.6 45 13-63 421-465 (894)
74 KOG0106|consensus 98.3 1.1E-06 2.3E-11 49.2 3.0 43 14-64 2-44 (216)
75 KOG4454|consensus 98.2 7.9E-07 1.7E-11 49.9 1.9 54 9-64 5-58 (267)
76 KOG4212|consensus 98.2 3E-06 6.4E-11 51.7 4.2 52 8-64 531-582 (608)
77 KOG0533|consensus 98.1 1.1E-05 2.4E-10 45.9 5.5 51 13-64 83-133 (243)
78 KOG4661|consensus 98.1 9.1E-06 2E-10 51.1 5.1 52 13-64 405-456 (940)
79 KOG0120|consensus 98.1 8.2E-06 1.8E-10 50.4 4.5 56 9-64 285-340 (500)
80 KOG4849|consensus 98.0 2.5E-06 5.5E-11 50.8 1.6 50 14-63 81-132 (498)
81 KOG0110|consensus 98.0 1.1E-05 2.4E-10 51.2 4.4 52 14-65 516-570 (725)
82 KOG4211|consensus 98.0 4.4E-05 9.6E-10 46.9 6.5 53 9-64 6-58 (510)
83 KOG0109|consensus 97.9 1.8E-05 3.9E-10 46.1 3.9 44 12-63 77-120 (346)
84 PF13893 RRM_5: RNA recognitio 97.9 3.8E-05 8.1E-10 34.1 4.1 30 30-64 1-30 (56)
85 KOG4660|consensus 97.9 3.7E-05 8E-10 47.7 4.7 47 13-64 75-121 (549)
86 KOG0129|consensus 97.8 0.00011 2.4E-09 45.4 5.8 53 11-64 257-315 (520)
87 KOG4210|consensus 97.7 1.8E-05 3.9E-10 46.0 1.8 53 12-64 183-236 (285)
88 KOG1548|consensus 97.7 0.0003 6.6E-09 41.9 6.7 53 10-63 131-191 (382)
89 KOG4211|consensus 97.7 0.00025 5.3E-09 43.8 6.4 55 9-64 99-154 (510)
90 KOG0151|consensus 97.6 0.00012 2.6E-09 47.0 4.4 53 11-63 172-227 (877)
91 KOG0129|consensus 97.6 0.00037 8.1E-09 43.2 6.3 57 8-64 365-422 (520)
92 KOG0147|consensus 97.6 1.8E-05 3.8E-10 49.1 0.2 52 13-64 179-230 (549)
93 KOG1457|consensus 97.6 0.0004 8.6E-09 39.5 5.4 55 10-64 31-86 (284)
94 KOG1457|consensus 97.3 0.00026 5.7E-09 40.2 2.5 50 11-64 208-257 (284)
95 KOG1995|consensus 96.9 0.0023 5.1E-08 38.2 4.4 57 8-64 61-125 (351)
96 PF08777 RRM_3: RNA binding mo 96.9 0.0049 1.1E-07 31.0 5.0 45 14-64 2-46 (105)
97 KOG1190|consensus 96.9 0.0016 3.4E-08 39.9 3.4 47 12-64 27-73 (492)
98 KOG4206|consensus 96.9 0.0062 1.3E-07 34.4 5.5 48 12-64 145-192 (221)
99 KOG0128|consensus 96.8 0.00094 2E-08 43.7 2.0 50 14-64 737-786 (881)
100 KOG3152|consensus 96.4 0.0076 1.6E-07 34.9 4.0 37 12-48 73-109 (278)
101 KOG0105|consensus 96.3 0.033 7.3E-07 31.1 6.0 48 9-63 111-158 (241)
102 KOG0128|consensus 96.3 9.8E-05 2.1E-09 47.9 -4.4 53 12-64 666-718 (881)
103 KOG0115|consensus 95.6 0.014 3.1E-07 33.8 2.5 49 14-63 32-80 (275)
104 KOG2314|consensus 95.5 0.091 2E-06 33.8 5.9 52 12-64 57-114 (698)
105 PF14605 Nup35_RRM_2: Nup53/35 95.2 0.1 2.2E-06 23.1 4.8 44 14-64 2-45 (53)
106 KOG4676|consensus 94.4 0.13 2.7E-06 31.8 4.4 51 14-64 8-61 (479)
107 KOG4307|consensus 94.3 0.072 1.6E-06 35.1 3.3 54 9-63 430-484 (944)
108 KOG4660|consensus 94.1 0.045 9.8E-07 34.7 2.2 50 15-64 390-440 (549)
109 KOG1365|consensus 94.1 0.33 7.1E-06 30.1 5.7 51 13-64 161-215 (508)
110 KOG4307|consensus 94.1 0.21 4.6E-06 33.0 5.1 52 13-64 867-918 (944)
111 KOG1365|consensus 94.0 0.077 1.7E-06 32.7 2.9 51 13-64 280-333 (508)
112 KOG1855|consensus 93.7 0.28 6.2E-06 30.6 4.9 37 12-48 230-266 (484)
113 KOG4410|consensus 92.5 0.82 1.8E-05 27.4 5.5 45 14-64 331-376 (396)
114 KOG0112|consensus 92.1 0.53 1.2E-05 31.9 4.8 49 11-65 453-501 (975)
115 KOG0106|consensus 91.1 0.18 3.9E-06 28.7 1.8 45 12-64 98-142 (216)
116 KOG2416|consensus 90.8 0.15 3.3E-06 32.9 1.5 53 6-64 437-490 (718)
117 KOG1456|consensus 90.3 2.7 5.8E-05 26.2 6.2 50 9-64 27-76 (494)
118 KOG0112|consensus 90.2 0.1 2.2E-06 35.0 0.3 52 11-63 370-421 (975)
119 PF08675 RNA_bind: RNA binding 89.6 1.5 3.3E-05 21.5 5.4 33 15-48 10-42 (87)
120 PF11608 Limkain-b1: Limkain b 87.9 2.1 4.6E-05 21.1 4.3 41 14-64 3-48 (90)
121 KOG1190|consensus 87.1 1.9 4.2E-05 27.0 4.2 31 12-42 413-443 (492)
122 COG5175 MOT2 Transcriptional r 85.3 2.7 5.8E-05 25.9 4.1 32 14-45 115-152 (480)
123 PF03467 Smg4_UPF3: Smg-4/UPF3 84.8 2.3 5.1E-05 23.3 3.5 29 12-40 6-35 (176)
124 KOG2193|consensus 84.6 0.83 1.8E-05 28.8 1.9 23 14-36 2-24 (584)
125 KOG4210|consensus 84.0 0.53 1.1E-05 27.8 0.9 54 11-64 86-139 (285)
126 KOG2253|consensus 79.1 0.94 2E-05 29.7 0.8 35 9-43 36-70 (668)
127 KOG2891|consensus 76.3 5.2 0.00011 24.1 3.2 53 10-62 146-215 (445)
128 PF15513 DUF4651: Domain of un 76.1 6 0.00013 18.2 2.8 18 28-45 9-26 (62)
129 KOG0120|consensus 71.7 11 0.00023 24.4 4.0 37 28-64 424-463 (500)
130 COG0030 KsgA Dimethyladenosine 70.9 9.1 0.0002 22.5 3.3 34 14-47 96-129 (259)
131 PF07292 NID: Nmi/IFP 35 domai 64.1 5.4 0.00012 19.6 1.3 24 12-35 51-74 (88)
132 PRK11558 putative ssRNA endonu 63.4 18 0.00039 18.2 3.5 47 13-62 27-73 (97)
133 PF09707 Cas_Cas2CT1978: CRISP 62.8 17 0.00037 17.8 4.0 47 13-62 25-71 (86)
134 KOG1456|consensus 60.8 40 0.00088 21.4 5.8 50 9-63 283-333 (494)
135 KOG4008|consensus 60.1 13 0.00028 21.8 2.6 31 10-40 37-67 (261)
136 PF12157 DUF3591: Protein of u 58.2 24 0.00052 22.6 3.7 41 18-61 358-398 (457)
137 PF05172 Nup35_RRM: Nup53/35/4 58.0 12 0.00027 18.7 2.0 30 14-44 7-36 (100)
138 PRK15464 cold shock-like prote 57.9 6.3 0.00014 18.4 0.9 8 54-61 15-22 (70)
139 PRK00274 ksgA 16S ribosomal RN 57.0 16 0.00035 21.2 2.7 33 15-47 107-139 (272)
140 PRK15463 cold shock-like prote 56.2 7.4 0.00016 18.1 1.0 8 54-61 15-22 (70)
141 PF15023 DUF4523: Protein of u 56.1 32 0.0007 18.8 4.4 45 12-63 85-133 (166)
142 PRK09937 stationary phase/star 55.1 8.2 0.00018 18.2 1.1 8 54-61 12-19 (74)
143 PF10567 Nab6_mRNP_bdg: RNA-re 54.5 12 0.00027 22.6 1.9 36 14-49 16-51 (309)
144 PRK09507 cspE cold shock prote 54.3 7.9 0.00017 17.9 0.9 8 54-61 14-21 (69)
145 PRK10943 cold shock-like prote 54.2 7.7 0.00017 17.9 0.9 8 54-61 14-21 (69)
146 PRK14998 cold shock-like prote 53.1 9.1 0.0002 18.0 1.1 8 54-61 12-19 (73)
147 PF15407 Spo7_2_N: Sporulation 52.8 11 0.00023 17.6 1.2 18 12-29 26-43 (67)
148 TIGR02381 cspD cold shock doma 52.6 9.6 0.00021 17.5 1.1 8 54-61 12-19 (68)
149 PRK10354 RNA chaperone/anti-te 51.6 9.3 0.0002 17.7 0.9 8 54-61 15-22 (70)
150 PRK09890 cold shock protein Cs 51.4 9.4 0.0002 17.7 0.9 8 54-61 15-22 (70)
151 TIGR01873 cas_CT1978 CRISPR-as 49.4 17 0.00037 17.9 1.7 47 13-62 25-72 (87)
152 COG0445 GidA Flavin-dependent 47.8 84 0.0018 21.1 5.0 39 9-47 297-335 (621)
153 PTZ00338 dimethyladenosine tra 47.6 23 0.0005 21.1 2.4 32 15-46 103-134 (294)
154 PF00313 CSD: 'Cold-shock' DNA 46.8 16 0.00036 16.3 1.4 9 54-62 11-19 (66)
155 cd04458 CSP_CDS Cold-Shock Pro 45.8 15 0.00033 16.3 1.2 8 54-61 11-18 (65)
156 PF03468 XS: XS domain; Inter 42.8 49 0.0011 17.0 3.2 36 26-64 30-65 (116)
157 KOG2591|consensus 41.6 1.1E+02 0.0023 20.6 5.4 35 11-45 173-209 (684)
158 COG0481 LepA Membrane GTPase L 41.6 77 0.0017 21.0 4.0 49 11-60 295-344 (603)
159 KOG2318|consensus 39.0 1.1E+02 0.0025 20.5 4.5 36 10-45 171-211 (650)
160 PF00398 RrnaAD: Ribosomal RNA 38.9 68 0.0015 18.5 3.4 28 13-40 97-126 (262)
161 PF14893 PNMA: PNMA 38.3 40 0.00087 20.7 2.4 26 11-36 16-41 (331)
162 KOG0821|consensus 37.9 28 0.0006 20.6 1.6 23 14-36 130-152 (326)
163 KOG0862|consensus 37.3 24 0.00051 20.4 1.3 14 51-64 105-118 (216)
164 PF04026 SpoVG: SpoVG; InterP 34.2 62 0.0013 15.7 3.2 24 40-63 3-26 (84)
165 KOG0008|consensus 34.1 75 0.0016 23.7 3.3 39 20-61 820-859 (1563)
166 KOG1996|consensus 33.7 1.2E+02 0.0026 18.8 4.0 36 28-63 301-337 (378)
167 PF11411 DNA_ligase_IV: DNA li 31.6 48 0.001 13.6 1.5 16 23-38 19-34 (36)
168 smart00650 rADc Ribosomal RNA 30.9 90 0.002 16.5 3.7 23 14-36 78-100 (169)
169 TIGR00755 ksgA dimethyladenosi 30.0 1.1E+02 0.0025 17.4 3.3 24 15-38 96-119 (253)
170 COG1278 CspC Cold shock protei 28.0 29 0.00062 16.2 0.5 8 54-61 12-19 (67)
171 PF15063 TC1: Thyroid cancer p 27.9 49 0.0011 16.0 1.3 27 14-40 26-52 (79)
172 KOG2068|consensus 27.1 47 0.001 20.4 1.4 36 14-49 78-116 (327)
173 PF00220 Hormone_4: Neurohypop 26.6 30 0.00065 9.7 0.4 6 17-22 2-7 (9)
174 PRK13259 regulatory protein Sp 25.8 1E+02 0.0022 15.4 3.3 13 51-63 14-26 (94)
175 KOG0738|consensus 25.3 88 0.0019 20.2 2.4 21 13-33 350-373 (491)
176 cd00027 BRCT Breast Cancer Sup 25.1 69 0.0015 13.3 3.4 26 14-39 2-27 (72)
177 PF13600 DUF4140: N-terminal d 24.4 29 0.00063 17.0 0.2 21 12-32 22-42 (104)
178 PF07230 Peptidase_S80: Bacter 22.5 1.1E+02 0.0024 20.0 2.5 35 16-54 281-315 (501)
179 COG4073 Uncharacterized protei 20.7 69 0.0015 18.0 1.2 18 14-31 16-36 (198)
180 PHA02531 20 portal vertex prot 20.6 93 0.002 20.4 1.9 34 16-53 284-317 (514)
181 PF14112 DUF4284: Domain of un 20.5 1.4E+02 0.0031 15.3 2.6 19 14-35 2-20 (122)
182 smart00195 DSPc Dual specifici 20.2 85 0.0019 15.8 1.5 19 14-32 6-24 (138)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=4.1e-16 Score=82.10 Aligned_cols=54 Identities=33% Similarity=0.411 Sum_probs=50.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||+.+++++|+++|.+||.|.++.++.++.+++++|||||+|.+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~ 85 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFND 85 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECC
Confidence 445789999999999999999999999999999999999999999999999986
No 2
>KOG0149|consensus
Probab=99.65 E-value=4.6e-16 Score=86.36 Aligned_cols=51 Identities=31% Similarity=0.529 Sum_probs=49.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+||||+|+|.+..+.|++.|++||+|.+..++.|+.+|++||||||.|..
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d 63 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRD 63 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeec
Confidence 689999999999999999999999999999999999999999999999975
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.63 E-value=4.4e-15 Score=86.35 Aligned_cols=54 Identities=28% Similarity=0.355 Sum_probs=50.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+.+|||+|||+.+++++|.++|++||.|.+++++.++.++.++|||||+|.+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~ 320 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTN 320 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECC
Confidence 344579999999999999999999999999999999999999999999999986
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.62 E-value=6e-15 Score=86.51 Aligned_cols=56 Identities=29% Similarity=0.282 Sum_probs=51.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||++||+++++++|+++|..+|.|.+++++.+..+++++|||||+|.+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~ 158 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGS 158 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEcc
Confidence 34456899999999999999999999999999999999999999999999999976
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.60 E-value=6.6e-15 Score=85.61 Aligned_cols=53 Identities=28% Similarity=0.496 Sum_probs=50.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...+|||+|||..+++++|+++|..+|.|.+++++.++.+|+++|||||+|.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~ 54 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVR 54 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECc
Confidence 34799999999999999999999999999999999999899999999999975
No 6
>KOG4207|consensus
Probab=99.58 E-value=1e-14 Score=80.22 Aligned_cols=64 Identities=80% Similarity=1.368 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 1 ~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
|+++.+|++.+....|-|-||.+-++.++|+.+|++||.|.+++++.|+-|++++|||||.|..
T Consensus 1 MS~g~~PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~ 64 (256)
T KOG4207|consen 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHD 64 (256)
T ss_pred CCCCCCCCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeee
Confidence 8999999999999999999999999999999999999999999999999999999999999963
No 7
>KOG0113|consensus
Probab=99.55 E-value=3e-14 Score=81.50 Aligned_cols=53 Identities=36% Similarity=0.589 Sum_probs=50.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.=+||||+-|+.++++..|+..|..||.|+.++||.+..||+++|||||+|+.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~ 152 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEH 152 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEecc
Confidence 33899999999999999999999999999999999999999999999999974
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.54 E-value=4.8e-14 Score=82.75 Aligned_cols=54 Identities=35% Similarity=0.470 Sum_probs=50.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....+|||+|||+.+++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~ 244 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNK 244 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECC
Confidence 345789999999999999999999999999999999998899999999999975
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.53 E-value=4.9e-14 Score=87.16 Aligned_cols=53 Identities=28% Similarity=0.513 Sum_probs=50.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+|||+.+++++|+++|..||.|.+++++.++.+++++|||||+|.+
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s 158 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEV 158 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCc
Confidence 45799999999999999999999999999999999999999999999999986
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.53 E-value=7.6e-14 Score=85.98 Aligned_cols=54 Identities=24% Similarity=0.395 Sum_probs=50.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+|||+++++++|+++|..+|.|.+++++.+ .+++++|||||+|.+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~ 108 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCG 108 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCC
Confidence 345689999999999999999999999999999999999 799999999999986
No 11
>KOG0126|consensus
Probab=99.51 E-value=6.5e-15 Score=79.61 Aligned_cols=56 Identities=32% Similarity=0.475 Sum_probs=51.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+...+.-|||||||+..++.+|.-.|++||++..+.+++|..||+++||||+.|+.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYED 86 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYED 86 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecC
Confidence 34556889999999999999999999999999999999999999999999999874
No 12
>KOG0122|consensus
Probab=99.51 E-value=7.5e-14 Score=78.10 Aligned_cols=55 Identities=33% Similarity=0.555 Sum_probs=51.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+...+|-|.||+.++++++|+++|.+||.|.++++.+++.||.++|||||.|.+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~s 240 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFES 240 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEec
Confidence 3455789999999999999999999999999999999999999999999999986
No 13
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.50 E-value=1.3e-13 Score=63.87 Aligned_cols=48 Identities=33% Similarity=0.553 Sum_probs=44.9
Q ss_pred EEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 16 l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
|||+|||.++++++|+++|..+|.+..+.+..+ .++..+|+|||+|.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~ 48 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFES 48 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESS
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcC
Confidence 799999999999999999999999999988887 688999999999986
No 14
>KOG0121|consensus
Probab=99.49 E-value=8.4e-14 Score=71.80 Aligned_cols=55 Identities=29% Similarity=0.630 Sum_probs=50.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++++||||||++.++++.+.++|+.+|.|.++.+-.++.+..+.|||||+|.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~ 87 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYS 87 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEec
Confidence 3457899999999999999999999999999999999999899999999999975
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.46 E-value=4.5e-13 Score=80.28 Aligned_cols=53 Identities=28% Similarity=0.432 Sum_probs=50.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+|||..+++.+|.++|..+|.|..+.++.++.+++++|||||+|.+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~ 140 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYD 140 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECC
Confidence 35799999999999999999999999999999999999999999999999976
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.46 E-value=3.8e-13 Score=83.33 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=49.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+|||+|||.++++++|+++|+.||.|..++++.++.+++++|||||+|.+
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~ 255 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 255 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECC
Confidence 4789999999999999999999999999999999999899999999999986
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.45 E-value=8.8e-13 Score=79.84 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=50.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+...+|||+|||..+++++|+++|..||.|..+.++.+..+|.++|||||+|.+
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~ 346 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKD 346 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECC
Confidence 345799999999999999999999999999999999998899999999999975
No 18
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.44 E-value=8.4e-13 Score=61.55 Aligned_cols=48 Identities=38% Similarity=0.598 Sum_probs=43.0
Q ss_pred EEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 16 l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
|||+|||+++++++|..+|..+|.|..+.+...+. +..+|+|||+|.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~ 48 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSS 48 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESS
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCC
Confidence 79999999999999999999999999999998876 8999999999986
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.43 E-value=7.5e-13 Score=81.18 Aligned_cols=51 Identities=31% Similarity=0.426 Sum_probs=48.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+|||+|||.++++++|+++|..+|.|.++++..+..+++++|||||+|.+
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~ 51 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQN 51 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECC
Confidence 379999999999999999999999999999999999899999999999976
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.42 E-value=1.4e-12 Score=73.94 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=44.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++|||+|||+.+++++|+++|+.||.|.++.++.++. .+|||||+|.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d 52 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKD 52 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCc
Confidence 47999999999999999999999999999999988753 57999999975
No 21
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=1.9e-12 Score=78.66 Aligned_cols=50 Identities=30% Similarity=0.436 Sum_probs=45.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....+||||||++.+++++|+..|..||.|.++.++ +.+| ||||||+|.+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMss 57 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSP 57 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecC
Confidence 345799999999999999999999999999999998 4677 9999999975
No 22
>KOG0117|consensus
Probab=99.37 E-value=3.1e-12 Score=76.50 Aligned_cols=55 Identities=24% Similarity=0.416 Sum_probs=51.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++.||||.||.++.+++|..+|...|.|-+++|++|+.+|.+||||||.|-+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~ 134 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCT 134 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeec
Confidence 3566899999999999999999999999999999999999999999999999965
No 23
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=4.4e-12 Score=71.18 Aligned_cols=51 Identities=27% Similarity=0.400 Sum_probs=45.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+.+|+|+||++.+++++|+++|+.||.|.++.++.+. ..+++|||+|.+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d 53 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKD 53 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECC
Confidence 345899999999999999999999999999999998874 445899999975
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.36 E-value=4.1e-12 Score=76.21 Aligned_cols=52 Identities=35% Similarity=0.652 Sum_probs=49.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++|||+|||..+++++|+++|..||.|..+.++.+..+|+++|||||+|.+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~ 237 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHD 237 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECC
Confidence 5899999999999999999999999999999999998899999999999975
No 25
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.35 E-value=8.9e-12 Score=68.90 Aligned_cols=52 Identities=44% Similarity=0.649 Sum_probs=49.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+|||+|||+.+++++|...|..+|.+..+.+..++.+++.+|+|||+|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~ 166 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFES 166 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecC
Confidence 4899999999999999999999999999999999998899999999999975
No 26
>KOG0131|consensus
Probab=99.35 E-value=2e-12 Score=69.94 Aligned_cols=56 Identities=27% Similarity=0.463 Sum_probs=52.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+.++..+||++||+..+++..|.++|.+.|.+..++++.++.+.+++||||++|.+
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~ 60 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRT 60 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEec
Confidence 55677999999999999999999999999999999999999999999999999976
No 27
>KOG0124|consensus
Probab=99.33 E-value=1e-12 Score=77.45 Aligned_cols=53 Identities=28% Similarity=0.518 Sum_probs=50.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEeeC
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLLF 65 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~ 65 (65)
.+++|||++.+...++.++.-|.+||.|+.+.+.+|+.|+++|||+||+|+-+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvP 165 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVP 165 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCc
Confidence 47999999999999999999999999999999999999999999999999853
No 28
>KOG0145|consensus
Probab=99.33 E-value=8.7e-13 Score=74.93 Aligned_cols=63 Identities=30% Similarity=0.396 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 2 ~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
||.+|..+.....+|||++||..++..+|+++|++||.|...++..|..+|.++|.|||.|++
T Consensus 116 SyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDK 178 (360)
T KOG0145|consen 116 SYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDK 178 (360)
T ss_pred EeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecc
Confidence 567777788888999999999999999999999999999888888888999999999999986
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.32 E-value=1e-11 Score=76.28 Aligned_cols=53 Identities=36% Similarity=0.490 Sum_probs=49.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....+|||+||+..+++++|+++|+.||.|.++.++.+ .++.++|||||+|.+
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~ 335 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSN 335 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCC
Confidence 34578999999999999999999999999999999998 689999999999986
No 30
>KOG0144|consensus
Probab=99.32 E-value=5.3e-12 Score=75.34 Aligned_cols=54 Identities=31% Similarity=0.523 Sum_probs=50.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+.-++|||-+|+.++|.+|+++|++||.|.++.+++|+-++..+|||||.|.+
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~t 85 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYT 85 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEecc
Confidence 334689999999999999999999999999999999999999999999999976
No 31
>KOG0111|consensus
Probab=99.30 E-value=1.7e-12 Score=72.28 Aligned_cols=55 Identities=31% Similarity=0.414 Sum_probs=51.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++||||+|...+++.-|..-|.+||.|.++.++.|-++++++|||||+|+-
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~ 61 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEE 61 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeec
Confidence 3445899999999999999999999999999999999999999999999999973
No 32
>KOG0130|consensus
Probab=99.29 E-value=6.3e-12 Score=65.54 Aligned_cols=60 Identities=25% Similarity=0.327 Sum_probs=55.2
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEeeC
Q psy7053 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLLF 65 (65)
Q Consensus 6 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~ 65 (65)
.|++...+..|||.++...+++++++..|..||.|+.+++-.++.||..+||+.|+|+|.
T Consensus 65 gPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~ 124 (170)
T KOG0130|consen 65 GPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETL 124 (170)
T ss_pred CCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhH
Confidence 356667778999999999999999999999999999999999999999999999999873
No 33
>KOG0125|consensus
Probab=99.29 E-value=1.1e-11 Score=71.95 Aligned_cols=54 Identities=35% Similarity=0.528 Sum_probs=46.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+..++|+|+|||+...+.||+.+|.+||.|.++-++.. ..-+||||||.|+.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen 145 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMEN 145 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecC
Confidence 3455689999999999999999999999999999988764 34478999999975
No 34
>KOG4205|consensus
Probab=99.27 E-value=1.4e-11 Score=71.55 Aligned_cols=53 Identities=38% Similarity=0.545 Sum_probs=50.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+++||++|+|.++++.|++.|..+|++.+|.+++++.++..+||+||+|++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~ 57 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFAT 57 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCC
Confidence 66899999999999999999999999999999999999999999999999985
No 35
>smart00362 RRM_2 RNA recognition motif.
Probab=99.26 E-value=4.7e-11 Score=54.67 Aligned_cols=48 Identities=38% Similarity=0.662 Sum_probs=43.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+|+|+|+|..+++++|+++|..+|.+..+.+..++ +.++|+|||+|.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~ 48 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFES 48 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCC
Confidence 58999999999999999999999999998887765 7788999999976
No 36
>KOG0127|consensus
Probab=99.26 E-value=2.8e-11 Score=74.04 Aligned_cols=53 Identities=34% Similarity=0.474 Sum_probs=50.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...+|||.|||++++++.|...|+.||.|..+.++.++.|+.++|.|||.|.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt 343 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKT 343 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEecc
Confidence 34899999999999999999999999999999999999999999999999976
No 37
>KOG0148|consensus
Probab=99.25 E-value=1.8e-11 Score=69.72 Aligned_cols=52 Identities=31% Similarity=0.446 Sum_probs=48.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
-..+|++.|...++.++|++.|.+||+|.++++++|..|+|+||||||.|..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~ 113 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPN 113 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccc
Confidence 3579999999999999999999999999999999999999999999999863
No 38
>KOG0108|consensus
Probab=99.22 E-value=2.6e-11 Score=72.98 Aligned_cols=51 Identities=27% Similarity=0.432 Sum_probs=49.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+.+||||+|++.+++.|..+|...|.|..++++.|+.+|+.+||||++|.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~ 69 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTD 69 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCc
Confidence 889999999999999999999999999999999999999999999999975
No 39
>smart00360 RRM RNA recognition motif.
Probab=99.21 E-value=9.2e-11 Score=53.49 Aligned_cols=47 Identities=36% Similarity=0.620 Sum_probs=43.1
Q ss_pred EecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 18 v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
|+|||..+++++|+++|..+|.+..+.+..++.++.++|+|||+|.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~ 47 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFES 47 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCC
Confidence 57899999999999999999999999888877789999999999976
No 40
>KOG0107|consensus
Probab=99.21 E-value=5e-11 Score=64.27 Aligned_cols=50 Identities=32% Similarity=0.553 Sum_probs=42.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEeeC
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLLF 65 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~ 65 (65)
...++||||||+..+++.+|+..|..||.+..+.+.. .+.|||||+|+.+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-----nPPGfAFVEFed~ 57 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-----NPPGFAFVEFEDP 57 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-----cCCCceEEeccCc
Confidence 3468999999999999999999999999998876544 3579999999864
No 41
>KOG0124|consensus
Probab=99.18 E-value=9.5e-11 Score=69.34 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=48.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++||.++..+.+++|++..|+.||.|.+|.+.+++..+.++||||++|..
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n 261 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 261 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEecc
Confidence 589999999999999999999999999999999999899999999999975
No 42
>KOG0144|consensus
Probab=99.16 E-value=1.9e-11 Score=73.06 Aligned_cols=51 Identities=37% Similarity=0.552 Sum_probs=48.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++||||.|+..++|.+++++|.+||.|.+|+++++. .+.+|||+||.|++
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFST 174 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEeh
Confidence 5789999999999999999999999999999999995 89999999999986
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.14 E-value=2.1e-10 Score=69.74 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=41.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
++.|||+|||+.+++++|+++|+.||.|..+.++. .+|+|||+|++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~ 47 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFED 47 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCc
Confidence 47899999999999999999999999999998764 35899999986
No 44
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.11 E-value=8.5e-10 Score=50.65 Aligned_cols=49 Identities=43% Similarity=0.628 Sum_probs=43.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+|++++||..++++++++.|..+|.+..+.+..++.+ .++|++||+|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s 49 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFED 49 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECC
Confidence 4899999999999999999999999999988877544 778999999976
No 45
>KOG0148|consensus
Probab=99.08 E-value=5.7e-10 Score=63.71 Aligned_cols=50 Identities=28% Similarity=0.458 Sum_probs=44.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++||+||++...+++.+++.|.+||.|.++++-.+ +||+||.|+|
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~t 209 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFET 209 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecc
Confidence 4455689999999999999999999999999999987665 5999999986
No 46
>KOG0114|consensus
Probab=99.08 E-value=1.2e-09 Score=54.79 Aligned_cols=52 Identities=31% Similarity=0.440 Sum_probs=44.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
++..+-|||.|||+.++.++..++|..||.|..+++-. +...+|-|||.|+.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYed 66 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYED 66 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehH
Confidence 34557899999999999999999999999999988765 44568999999874
No 47
>KOG0105|consensus
Probab=99.07 E-value=5.3e-10 Score=61.11 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=43.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEeeC
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLLF 65 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~ 65 (65)
...++|||+|||.++.+.+++.+|-+||.|..+.|-.. .-...||||+|+.+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~ 55 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDP 55 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCc
Confidence 44589999999999999999999999999999877432 23468999999863
No 48
>KOG0127|consensus
Probab=99.03 E-value=7.2e-10 Score=68.08 Aligned_cols=51 Identities=25% Similarity=0.462 Sum_probs=48.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEe
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLL 63 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~ 63 (65)
+.||||++||++++.++|..+|+..|.|..+.++.+..++.++|||||.|.
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFa 55 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFA 55 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeee
Confidence 489999999999999999999999999999999999989999999999996
No 49
>KOG0146|consensus
Probab=99.02 E-value=3.8e-10 Score=64.57 Aligned_cols=55 Identities=29% Similarity=0.419 Sum_probs=49.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+....++||||.|...-.|++++++|..||.|++|.+.+.+ .|.+||++||.|.+
T Consensus 15 rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s 69 (371)
T KOG0146|consen 15 RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSS 69 (371)
T ss_pred CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEecc
Confidence 33456899999999999999999999999999999888775 78999999999975
No 50
>KOG0147|consensus
Probab=99.02 E-value=2.4e-10 Score=69.71 Aligned_cols=50 Identities=34% Similarity=0.616 Sum_probs=47.5
Q ss_pred EEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+||+|||++++++++++.+|.+||.|..+.++.+..||.++||||++|..
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEec
Confidence 39999999999999999999999999999999998899999999999964
No 51
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.01 E-value=3.2e-09 Score=64.65 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=42.8
Q ss_pred CCcEEEEecCCC-CCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTY-RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...+|||+||++ .+++++|+.+|+.||.|.++.++.+ .+|+|||+|.+
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~ 322 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMAD 322 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECC
Confidence 457999999998 6999999999999999999988775 26999999975
No 52
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.96 E-value=3.9e-09 Score=52.43 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=45.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhc--cCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFER--CGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.||++.|+|...+..+|.+++.. .|....+.++.|..++.+.|||||.|.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~ 54 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTS 54 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCC
Confidence 58999999999999999888875 4778889999999999999999999975
No 53
>KOG4208|consensus
Probab=98.96 E-value=3.9e-09 Score=58.16 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=47.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcc-CCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERC-GEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....-+++..+|....+..+...|.++ |.+.+.++.+.+.||.++|||||+|++
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs 101 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFES 101 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEecc
Confidence 334568899999999999999999887 788888888999999999999999986
No 54
>KOG0146|consensus
Probab=98.94 E-value=2.7e-09 Score=61.16 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=53.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+..++++|||=.||.+..+.+|.++|-+||.|...++-.|+.|..+|.||||.|+.
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 366778999999999999999999999999999999999999999999999999975
No 55
>KOG0145|consensus
Probab=98.93 E-value=7.2e-09 Score=59.27 Aligned_cols=57 Identities=26% Similarity=0.316 Sum_probs=51.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....+..+||=||..++++..|-++|.+||.+..+.+++|..+.+.||||||....
T Consensus 273 ~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtN 329 (360)
T KOG0145|consen 273 GGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 329 (360)
T ss_pred CCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecc
Confidence 344556899999999999999999999999999999999999999999999997643
No 56
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.90 E-value=8e-09 Score=62.83 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=37.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccC------------CEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCG------------EVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g------------~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||+.+++++|.++|..++ .|..+. .++.+|||||+|.+
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~~ 232 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFRT 232 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeCC
Confidence 3458999999999999999999998741 222222 34568999999986
No 57
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.88 E-value=9.2e-09 Score=64.00 Aligned_cols=44 Identities=30% Similarity=0.366 Sum_probs=39.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcc--CCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERC--GEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++|||+||++++++++|+++|+.| |.|.++.++ ++||||+|.+
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s 278 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFED 278 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCC
Confidence 4789999999999999999999999 999988653 4699999986
No 58
>KOG0131|consensus
Probab=98.86 E-value=2.8e-09 Score=57.95 Aligned_cols=55 Identities=25% Similarity=0.261 Sum_probs=48.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEE-EEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDI-YIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+.+.++|++||.+.+++..|...|+.||.+.+. .+++++.||.++|+||+.|++
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~s 148 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYAS 148 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechh
Confidence 3455899999999999999999999999987653 567888899999999999876
No 59
>KOG4205|consensus
Probab=98.81 E-value=2.6e-08 Score=58.14 Aligned_cols=52 Identities=35% Similarity=0.512 Sum_probs=49.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|+++||.++++.++++.|.++|.|..+.++.|..+.+++||+||.|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~ 148 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDS 148 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecc
Confidence 4689999999999999999999999999999999999999999999999875
No 60
>KOG0415|consensus
Probab=98.79 E-value=8.3e-09 Score=61.02 Aligned_cols=51 Identities=33% Similarity=0.385 Sum_probs=48.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.-|||..|++.+++++|.-+|+.||.|..|.++++..||.+-.||||+|+.
T Consensus 240 NVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen 290 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFEN 290 (479)
T ss_pred ceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecc
Confidence 579999999999999999999999999999999999999999999999974
No 61
>KOG0110|consensus
Probab=98.74 E-value=1.2e-08 Score=63.95 Aligned_cols=53 Identities=25% Similarity=0.501 Sum_probs=48.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEeeC
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLLF 65 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~ 65 (65)
..+|+|.|+|+.++...++.+|..||++..++++.....+.++|||||+|.|+
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~ 665 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTP 665 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCc
Confidence 57899999999999999999999999999999987766788899999999773
No 62
>KOG4212|consensus
Probab=98.74 E-value=5.8e-08 Score=58.86 Aligned_cols=50 Identities=26% Similarity=0.347 Sum_probs=46.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhhc-cCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFER-CGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+.+||.|+|+++.+.+|++++.. .|+|..+.+..|. +||++|+|.|+|.+
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~ 95 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKD 95 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeC
Confidence 56999999999999999999985 7999999999994 99999999999976
No 63
>KOG0123|consensus
Probab=98.72 E-value=3.8e-08 Score=58.61 Aligned_cols=47 Identities=21% Similarity=0.356 Sum_probs=43.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+||.||+.+++..+|.++|+.||.|..|.+..+. .| ++|| ||+|++
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~ 124 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFES 124 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCC
Confidence 39999999999999999999999999999999985 55 8999 999986
No 64
>KOG0117|consensus
Probab=98.70 E-value=7.1e-08 Score=58.30 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=41.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCC-EEEEEEeec-CCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGE-VGDIYIPRD-RFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~-~~~~~~~g~~fv~f~~ 64 (65)
..++|||||+|...+++++.+.+...++ +.++-+..+ -+..+++|||||+|++
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~ 217 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYES 217 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeec
Confidence 4589999999999999999999987654 444434333 2568899999999975
No 65
>KOG0116|consensus
Probab=98.68 E-value=7.1e-08 Score=58.20 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=43.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+||+.|||.+++...|++.|..||.|+...+......++..+||||+|.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~ 339 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFEN 339 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEee
Confidence 3569999999999999999999999999988765543345555999999975
No 66
>smart00361 RRM_1 RNA recognition motif.
Probab=98.65 E-value=1.1e-07 Score=44.45 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=31.3
Q ss_pred HHHHHHHhh----ccCCEEEEE-EeecCCC--CCcccEEEEEEee
Q psy7053 27 PDDLRRVFE----RCGEVGDIY-IPRDRFT--RESRGFAFVRLLL 64 (65)
Q Consensus 27 ~~~l~~~f~----~~g~i~~~~-~~~~~~~--~~~~g~~fv~f~~ 64 (65)
+++|++.|. .||.+.++. ++.++.+ +.++|++||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~ 46 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFER 46 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECC
Confidence 467777787 999999985 6777666 8999999999976
No 67
>KOG0109|consensus
Probab=98.65 E-value=4.5e-08 Score=56.60 Aligned_cols=42 Identities=33% Similarity=0.552 Sum_probs=36.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEe
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLL 63 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~ 63 (65)
.+|||||||..+++..|+.+|++||++.+|.++. .||||.-+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiE 44 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIE 44 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEee
Confidence 5799999999999999999999999999998865 36777654
No 68
>KOG4209|consensus
Probab=98.57 E-value=7.1e-08 Score=54.38 Aligned_cols=56 Identities=27% Similarity=0.553 Sum_probs=50.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.......+|++|+.+.++...++.-|+.||.+..+.++.+...+.++||+||+|..
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~ 152 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSS 152 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEeccc
Confidence 34455899999999999998899999999999989999999899999999999975
No 69
>KOG0123|consensus
Probab=98.51 E-value=3.4e-07 Score=54.62 Aligned_cols=54 Identities=28% Similarity=0.394 Sum_probs=48.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....+|||.|++..++++.|+..|+.+|.|..++++.+ ..++++||+||+|++
T Consensus 267 ~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~-~~g~skG~gfV~fs~ 320 (369)
T KOG0123|consen 267 SLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVD-ENGKSKGFGFVEFSS 320 (369)
T ss_pred cccccccccccCccccchhHHHHHHhcccceeeEEEEec-cCCCccceEEEEcCC
Confidence 445589999999999999999999999999999888877 489999999999986
No 70
>KOG4206|consensus
Probab=98.47 E-value=1e-06 Score=49.19 Aligned_cols=48 Identities=33% Similarity=0.490 Sum_probs=41.2
Q ss_pred cEEEEecCCCCCCHHHHHH----HhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRR----VFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~----~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+|||.||+..+..++|++ +|+.||.|.++.... +.+.+|-|||.|..
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~ 61 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKE 61 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecC
Confidence 4999999999999888776 999999998875433 78899999999964
No 71
>KOG0226|consensus
Probab=98.45 E-value=2.3e-07 Score=52.86 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=48.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+...+||+|.|..+.+++.|.+.|..|-......++++..||+++||+||.|.+
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~ 241 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRD 241 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecC
Confidence 3456899999999999999999999998877777889999999999999999975
No 72
>KOG0153|consensus
Probab=98.36 E-value=1.3e-06 Score=51.60 Aligned_cols=51 Identities=27% Similarity=0.424 Sum_probs=43.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
++.....+|||++|...+.+.+|+.-|-+||+|..+.++.. +++|||.|.|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftT 273 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTT 273 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehh
Confidence 34455589999999999999999999999999998876553 4699999976
No 73
>KOG0132|consensus
Probab=98.30 E-value=1.5e-06 Score=55.65 Aligned_cols=45 Identities=31% Similarity=0.541 Sum_probs=39.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEe
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLL 63 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~ 63 (65)
++|||||.|+..+++.+|..+|+.||+|.++.+.- ++|+|||...
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~ 465 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMV 465 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEe
Confidence 48999999999999999999999999999986644 5689998753
No 74
>KOG0106|consensus
Probab=98.26 E-value=1.1e-06 Score=49.21 Aligned_cols=43 Identities=28% Similarity=0.532 Sum_probs=37.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+||+++|+.+.+.++..+|..+|.+..+.+.. ||+||+|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed 44 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFED 44 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCc
Confidence 4789999999999999999999999998876533 788999875
No 75
>KOG4454|consensus
Probab=98.21 E-value=7.9e-07 Score=49.90 Aligned_cols=54 Identities=26% Similarity=0.327 Sum_probs=45.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+..++|||+|+-..++++.|.++|.+.|.|.++.+..++ .++.+ |+||+|..
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~ 58 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPN 58 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeeccc
Confidence 34556899999999999999999999999999998887765 55666 99999863
No 76
>KOG4212|consensus
Probab=98.20 E-value=3e-06 Score=51.69 Aligned_cols=52 Identities=25% Similarity=0.246 Sum_probs=43.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....+.++|+|.|||++.++..|++.|..+|.+....++ +.|+++| .|.|.+
T Consensus 531 gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s 582 (608)
T KOG4212|consen 531 GAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFS 582 (608)
T ss_pred cccccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecC
Confidence 345667899999999999999999999999999887763 4788887 677765
No 77
>KOG0533|consensus
Probab=98.14 E-value=1.1e-05 Score=45.91 Aligned_cols=51 Identities=29% Similarity=0.406 Sum_probs=44.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+|+|.|||..+.+++|+++|..+|.+..+.+..++ +|.+.|.|-|.|..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r 133 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNR 133 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecc
Confidence 3789999999999999999999999988887777775 89999999888864
No 78
>KOG4661|consensus
Probab=98.11 E-value=9.1e-06 Score=51.15 Aligned_cols=52 Identities=23% Similarity=0.338 Sum_probs=45.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+++|||.+|...+...+|+.+|++||.|.-..++....+.-.+.|+||...|
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSt 456 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMST 456 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecc
Confidence 4799999999999999999999999999888888776666778999998875
No 79
>KOG0120|consensus
Probab=98.08 E-value=8.2e-06 Score=50.36 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=51.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.......+++++||...++..+.++...+|.+....++.+..+|.++||+|.+|-.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~d 340 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCD 340 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeC
Confidence 44556789999999999999999999999999999999999999999999999865
No 80
>KOG4849|consensus
Probab=98.03 E-value=2.5e-06 Score=50.78 Aligned_cols=50 Identities=28% Similarity=0.423 Sum_probs=41.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccC--CEEEEEEeecCCCCCcccEEEEEEe
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCG--EVGDIYIPRDRFTRESRGFAFVRLL 63 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~ 63 (65)
..+|||||.|++++++|.+-+...| .+.++.+-..+.+|++||||.+...
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~ 132 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLN 132 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEec
Confidence 4799999999999999988877655 5666667778889999999998654
No 81
>KOG0110|consensus
Probab=98.02 E-value=1.1e-05 Score=51.19 Aligned_cols=52 Identities=35% Similarity=0.451 Sum_probs=41.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCC---CCcccEEEEEEeeC
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFT---RESRGFAFVRLLLF 65 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~~fv~f~~~ 65 (65)
.+||+.||+++++.+++...|...|.|..+.+...+.. -.+.|||||+|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~ 570 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKP 570 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCH
Confidence 34999999999999999999999999988876654322 12349999999863
No 82
>KOG4211|consensus
Probab=97.99 E-value=4.4e-05 Score=46.94 Aligned_cols=53 Identities=19% Similarity=0.397 Sum_probs=42.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+.+...-|-+.+|||++++++|..+|+.++ |..+.+ .+.+|++.|=|||+|.+
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~--~r~~Gr~sGeA~Ve~~s 58 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEI--PRRNGRPSGEAYVEFTS 58 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEE--eccCCCcCcceEEEeec
Confidence 344456677889999999999999999885 655444 44689999999999975
No 83
>KOG0109|consensus
Probab=97.93 E-value=1.8e-05 Score=46.12 Aligned_cols=44 Identities=32% Similarity=0.465 Sum_probs=39.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEe
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLL 63 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~ 63 (65)
...+++|+|+.+.++.++++..|.++|.+..|.++. +|+||.|+
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d 120 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFD 120 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEe
Confidence 447899999999999999999999999999998865 58999986
No 84
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=97.92 E-value=3.8e-05 Score=34.13 Aligned_cols=30 Identities=43% Similarity=0.744 Sum_probs=23.4
Q ss_pred HHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 30 LRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 30 l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
|.++|++||.|.++.+.... ++++||+|.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~ 30 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFAS 30 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESS
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECC
Confidence 57889999999998775532 6899999976
No 85
>KOG4660|consensus
Probab=97.88 E-value=3.7e-05 Score=47.75 Aligned_cols=47 Identities=34% Similarity=0.445 Sum_probs=40.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++|+|-|||..+++++|+++|+.+|+|..++. +...+|..||+|-+
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyD 121 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYD 121 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEee
Confidence 379999999999999999999999999987543 55667999999965
No 86
>KOG0129|consensus
Probab=97.79 E-value=0.00011 Score=45.43 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=40.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecC---CCCCccc---EEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDR---FTRESRG---FAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~~g---~~fv~f~~ 64 (65)
.-+++||+|+||++++|+.+...|..||.+ .+.++... .---++| |+|+.|+.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~ 315 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFED 315 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecc
Confidence 445899999999999999999999999987 45565211 1122356 99999874
No 87
>KOG4210|consensus
Probab=97.73 E-value=1.8e-05 Score=46.00 Aligned_cols=53 Identities=30% Similarity=0.533 Sum_probs=47.1
Q ss_pred CCcEEE-EecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLK-VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~-v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...+++ ++++++.+++++|+..|..+|.|..++++.++.++..+|++++.|..
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSA 236 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhh
Confidence 345666 99999999999999889999999999999999999999999998753
No 88
>KOG1548|consensus
Probab=97.73 E-value=0.0003 Score=41.90 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=42.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEE--------EEEEeecCCCCCcccEEEEEEe
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVG--------DIYIPRDRFTRESRGFAFVRLL 63 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~~fv~f~ 63 (65)
......|||+|||.+++.+.+.++++.||-|. +|.+-++. .|+.+|=|.+.|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~ 191 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYI 191 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEee
Confidence 34446799999999999999999999999664 35666664 5888998887774
No 89
>KOG4211|consensus
Probab=97.72 E-value=0.00025 Score=43.82 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=42.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEE-EEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD-IYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.......|-+.+||+.+++++|.++|+..--+.. +.++.++ .+++.|-|||.|++
T Consensus 99 s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~s 154 (510)
T KOG4211|consen 99 SSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFES 154 (510)
T ss_pred CCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecC
Confidence 3345567889999999999999999997643333 4456664 67788999999986
No 90
>KOG0151|consensus
Probab=97.63 E-value=0.00012 Score=47.03 Aligned_cols=53 Identities=28% Similarity=0.365 Sum_probs=42.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecC---CCCCcccEEEEEEe
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDR---FTRESRGFAFVRLL 63 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~~g~~fv~f~ 63 (65)
+...++|++||+..++++.|-..|..||.+..+.++..+ +....+-+|||.|-
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafm 227 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFM 227 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeeh
Confidence 344789999999999999999999999999888877654 22334467788774
No 91
>KOG0129|consensus
Probab=97.63 E-value=0.00037 Score=43.23 Aligned_cols=57 Identities=21% Similarity=0.164 Sum_probs=49.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhh-ccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFE-RCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...+..+|||||+||.-.+...|..++. -||.|..+.+=.|++=+-++|-|=|.|..
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsn 422 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSN 422 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecc
Confidence 3556669999999999999999999999 59999888887887788889988888864
No 92
>KOG0147|consensus
Probab=97.57 E-value=1.8e-05 Score=49.08 Aligned_cols=52 Identities=33% Similarity=0.477 Sum_probs=47.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+++|+--++...+.-+|.++|+..|.|.+++++.++.++..+|.+||+|..
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D 230 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCD 230 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEec
Confidence 3678888788888899999999999999999999999999999999999964
No 93
>KOG1457|consensus
Probab=97.57 E-value=0.0004 Score=39.50 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=39.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEee-cCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPR-DRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~-~~~~~~~~g~~fv~f~~ 64 (65)
....++|||.+||.++-.-.|.-+|..|..-.-+.+-. ++...-.+-+||+.|.+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s 86 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTS 86 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecc
Confidence 34469999999999999999999999875443333322 22222334799999975
No 94
>KOG1457|consensus
Probab=97.27 E-value=0.00026 Score=40.19 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=36.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....+|||.||..+++++.|+++|+.|.....+++.. ..| ...+|++|+.
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~--~~g--~~vaf~~~~~ 257 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA--RGG--MPVAFADFEE 257 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec--CCC--cceEeecHHH
Confidence 3446899999999999999999999986554444422 122 3578888863
No 95
>KOG1995|consensus
Probab=96.94 E-value=0.0023 Score=38.23 Aligned_cols=57 Identities=21% Similarity=0.148 Sum_probs=47.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEE--------EEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD--------IYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.......++||-+||..++++++.+.|.+++.|.. +.+-.+++|++.||=|.|.|++
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D 125 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYED 125 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecC
Confidence 34455578999999999999999999999997753 4556778999999999998875
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.94 E-value=0.0049 Score=31.04 Aligned_cols=45 Identities=27% Similarity=0.430 Sum_probs=27.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+-|.+.+++..++.++|+..|..+|.|..+.+... . --|+|.|.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G----~--~~g~VRf~~ 46 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG----D--TEGYVRFKT 46 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC----C--CEEEEEECC
Confidence 45788889999999999999999999988876442 2 356888865
No 97
>KOG1190|consensus
Probab=96.90 E-value=0.0016 Score=39.88 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=37.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++-+.++|||++++|.++.++..+||.+..+.+... ++ -+|+++.+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG----kn--QAflem~d 73 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG----KN--QAFLEMAD 73 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc----ch--hhhhhhcc
Confidence 4578999999999999999999999999988765432 22 56777654
No 98
>KOG4206|consensus
Probab=96.87 E-value=0.0062 Score=34.43 Aligned_cols=48 Identities=25% Similarity=0.330 Sum_probs=40.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....+++.|+|..++.+.+..+|.+|.....++++... .+.+||+|.+
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~ 192 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLS 192 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecch
Confidence 34689999999999999999999999888888876542 4789999975
No 99
>KOG0128|consensus
Probab=96.78 E-value=0.00094 Score=43.66 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=45.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|.|.|+..+.+.++.++...|.+...+++..+ .|+++|.+++.|.+
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ 786 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNT 786 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCC
Confidence 568999999999999999999999999998877765 89999999999875
No 100
>KOG3152|consensus
Probab=96.44 E-value=0.0076 Score=34.88 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=32.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeec
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRD 48 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~ 48 (65)
..--||++++|+..+...|++++..||.|.++.+...
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE 109 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPE 109 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecch
Confidence 4467999999999999999999999999999987644
No 101
>KOG0105|consensus
Probab=96.35 E-value=0.033 Score=31.13 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=38.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEe
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLL 63 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~ 63 (65)
......+|.|.+||.+.++.+|+.-....|.+....+..+ |++.|+|.
T Consensus 111 srrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~ 158 (241)
T KOG0105|consen 111 SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYL 158 (241)
T ss_pred ccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeee
Confidence 4444578999999999999999999999999987766554 46677764
No 102
>KOG0128|consensus
Probab=96.31 E-value=9.8e-05 Score=47.94 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=45.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|++||+..+.+.++...|..+|.+..+++......++.+|+||++|..
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~ 718 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLK 718 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeec
Confidence 34678999999999999999999999888777666566789999999999975
No 103
>KOG0115|consensus
Probab=95.57 E-value=0.014 Score=33.78 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=40.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEe
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLL 63 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~ 63 (65)
..|||.||+.-++.+.+.+-|+.||.+....+..| ..+++.+-++|+|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~ 80 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFA 80 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhh
Confidence 67999999999999999999999999987655555 36666676777765
No 104
>KOG2314|consensus
Probab=95.49 E-value=0.091 Score=33.77 Aligned_cols=52 Identities=23% Similarity=0.369 Sum_probs=40.6
Q ss_pred CCcEEEEecCCCCCCH------HHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTP------DDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~------~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....|.|.|+|..-.. .-|..+|+.+|.+....++.+..+| .+||.|++|.+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~ 114 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYAS 114 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecC
Confidence 3467888999876543 3467889999999888888776555 99999999975
No 105
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.23 E-value=0.1 Score=23.05 Aligned_cols=44 Identities=25% Similarity=0.464 Sum_probs=30.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+.|-|.+.+.+..+..+. .|..+|+|.+..+. ...-+.++.|.+
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~------~~~~~~~l~y~~ 45 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVP------ESTNWMYLKYKS 45 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcC------CCCcEEEEEECC
Confidence 466777777666555554 67789999988764 223467888865
No 106
>KOG4676|consensus
Probab=94.44 E-value=0.13 Score=31.79 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=38.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecC-CC--CCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDR-FT--RESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~--~~~~g~~fv~f~~ 64 (65)
..|-|.||..+++.++++.+|...|.|..+.|.-.. .. ....-.|||.|..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d 61 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLD 61 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccC
Confidence 478899999999999999999999999988765321 11 2223578888754
No 107
>KOG4307|consensus
Probab=94.29 E-value=0.072 Score=35.06 Aligned_cols=54 Identities=26% Similarity=0.068 Sum_probs=42.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEE-EEEeecCCCCCcccEEEEEEe
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD-IYIPRDRFTRESRGFAFVRLL 63 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~ 63 (65)
..+....|||..||..+.+.++..+|...-.+.+ +.+... .+++.++-|||+|.
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~ 484 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFI 484 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-Ccccccchhhheec
Confidence 3455678999999999999999999987555555 555444 47888899999986
No 108
>KOG4660|consensus
Probab=94.14 E-value=0.045 Score=34.67 Aligned_cols=50 Identities=24% Similarity=0.354 Sum_probs=31.8
Q ss_pred EEEEecCCCCCCHHHHHHHhh-ccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 15 SLKVDNLTYRTTPDDLRRVFE-RCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
++.|.|++...+...|.+.-. ..|.-..+.++.|-.+.++.|||||.|..
T Consensus 390 t~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~s 440 (549)
T KOG4660|consen 390 TLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTS 440 (549)
T ss_pred hhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecC
Confidence 344444444444444433322 24556667888998899999999998864
No 109
>KOG1365|consensus
Probab=94.14 E-value=0.33 Score=30.08 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=37.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhc-c---CCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFER-C---GEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~-~---g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.-.|-+.+||+++++.++.++|.+ + |....+.++.. ..|+..|=|||.|..
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFAC 215 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecC
Confidence 356778899999999999999963 2 23334444443 478888999999864
No 110
>KOG4307|consensus
Probab=94.08 E-value=0.21 Score=33.02 Aligned_cols=52 Identities=15% Similarity=0.122 Sum_probs=40.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+-|-+.|+|++++.+++-++|..|..+..-...+-.+.|+..|-+-|.|++
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes 918 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFES 918 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecC
Confidence 3578889999999999999999998644332233444678888999999986
No 111
>KOG1365|consensus
Probab=94.01 E-value=0.077 Score=32.68 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=40.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccC-CEEE--EEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCG-EVGD--IYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~--~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...|-+.+||+.++.+++..+|..|- .|.. ++++.. ..|.+.|-|||++.+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~n 333 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRN 333 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhh
Confidence 35788999999999999999998875 3443 556655 578889999998753
No 112
>KOG1855|consensus
Probab=93.67 E-value=0.28 Score=30.59 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=33.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeec
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRD 48 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~ 48 (65)
.+++|.+-|||.+-.-+.|.++|..+|.|+.+++...
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckP 266 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKP 266 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCC
Confidence 5689999999999999999999999999999987654
No 113
>KOG4410|consensus
Probab=92.50 E-value=0.82 Score=27.40 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=32.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCE-EEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEV-GDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.-++++||+.++.-.+|+..+..-+.. .++.| . | +.|-||+.|..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw--k---g-~~~k~flh~~~ 376 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW--K---G-HFGKCFLHFGN 376 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee--e---c-CCcceeEecCC
Confidence 469999999999999999988876533 23333 2 1 45668888753
No 114
>KOG0112|consensus
Probab=92.15 E-value=0.53 Score=31.89 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=38.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEeeC
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLLF 65 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~ 65 (65)
.....+|+++|..++....+.+.|..||.|..+.+- +...|+++.|+++
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~ 501 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESP 501 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccC
Confidence 345789999999999999999999999998776541 1235888887753
No 115
>KOG0106|consensus
Probab=91.15 E-value=0.18 Score=28.66 Aligned_cols=45 Identities=36% Similarity=0.456 Sum_probs=35.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+.+.+.+++..+.+.+|...|.++|.+....+ ..+++||+|++
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSE 142 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehh
Confidence 3467888899999999999999999998833322 35678999875
No 116
>KOG2416|consensus
Probab=90.84 E-value=0.15 Score=32.95 Aligned_cols=53 Identities=26% Similarity=0.372 Sum_probs=39.3
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhc-cCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFER-CGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 6 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+|.+...+..|+|.||-...+..+|+.++.. +|.|... |+ | +.|..|||.|.|
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss 490 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSS 490 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEeccc
Confidence 4556667788999999999999999999985 5555444 32 2 245678888765
No 117
>KOG1456|consensus
Probab=90.26 E-value=2.7 Score=26.22 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=37.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....+--+.|.+|-..+++.+|-+-++.||.|..+.++-. +..+.|+|+.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefed 76 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFED 76 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeecc
Confidence 3444567899999999999999999999999977654432 2346677763
No 118
>KOG0112|consensus
Probab=90.15 E-value=0.1 Score=35.03 Aligned_cols=52 Identities=27% Similarity=0.491 Sum_probs=38.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEe
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLL 63 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~ 63 (65)
...++||+||++...++.+++..|..+|.+.++.+-..+ -+.---|+|+.|.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~ 421 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLL 421 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhh
Confidence 345899999999999999999999999999888764432 1222245666654
No 119
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.56 E-value=1.5 Score=21.49 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=22.3
Q ss_pred EEEEecCCCCCCHHHHHHHhhccCCEEEEEEeec
Q psy7053 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRD 48 (65)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~ 48 (65)
.+|--..|...-..+|.++|++||.| .+.++.+
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~d 42 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWIND 42 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCE-EEEEECT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcC
Confidence 45555599999999999999999988 5555554
No 120
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=87.91 E-value=2.1 Score=21.08 Aligned_cols=41 Identities=32% Similarity=0.515 Sum_probs=22.9
Q ss_pred cEEEEecCCCCCCHHH----HHHHhhccC-CEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDD----LRRVFERCG-EVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..|+|.|||-+.+... |+++...+| .+..+ + .+-|++.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~---~~tAilrF~~ 48 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------S---GGTAILRFPN 48 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------e---CCEEEEEeCC
Confidence 3589999999988655 556666776 44333 1 2567787764
No 121
>KOG1190|consensus
Probab=87.15 E-value=1.9 Score=27.03 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=25.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEE
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGD 42 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~ 42 (65)
.+.++...|+|.++++++++..|..-|...+
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vk 443 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVK 443 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEE
Confidence 3468999999999999999999997665433
No 122
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=85.27 E-value=2.7 Score=25.92 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=24.1
Q ss_pred cEEEEecCCCCCCHHH------HHHHhhccCCEEEEEE
Q psy7053 14 VSLKVDNLTYRTTPDD------LRRVFERCGEVGDIYI 45 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~------l~~~f~~~g~i~~~~~ 45 (65)
.-+||-+|+..+..+. -.++|.+||.|.++.+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvv 152 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVV 152 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEe
Confidence 4578888888776544 2588999999988754
No 123
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=84.78 E-value=2.3 Score=23.31 Aligned_cols=29 Identities=7% Similarity=0.045 Sum_probs=19.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhc-cCCE
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFER-CGEV 40 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~-~g~i 40 (65)
...+|-|+.||+..+++.+.+.+.. ++.-
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~ 35 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDE 35 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccc
Confidence 3468999999999999999887765 5544
No 124
>KOG2193|consensus
Probab=84.55 E-value=0.83 Score=28.78 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhhc
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFER 36 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~ 36 (65)
..+|++||....+..++..+|..
T Consensus 2 nklyignL~p~~~psdl~svfg~ 24 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGD 24 (584)
T ss_pred CcccccccCCCCChHHHHHHhcc
Confidence 36899999999999999999875
No 125
>KOG4210|consensus
Probab=84.04 E-value=0.53 Score=27.77 Aligned_cols=54 Identities=13% Similarity=-0.032 Sum_probs=40.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...+++|++++.+.+.+.....++...|......+.........+|++++.|..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ 139 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAG 139 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeecccc
Confidence 356889999999999988777777777765555554444577788999998864
No 126
>KOG2253|consensus
Probab=79.08 E-value=0.94 Score=29.70 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=29.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEE
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDI 43 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~ 43 (65)
..+...++|++|+...+....+..++..+|.|..+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~ 70 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSW 70 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhh
Confidence 34445799999999999999999999999987554
No 127
>KOG2891|consensus
Probab=76.32 E-value=5.2 Score=24.10 Aligned_cols=53 Identities=25% Similarity=0.458 Sum_probs=34.8
Q ss_pred CCCCcEEEEecCCCC------------CCHHHHHHHhhccCCEEEEEEe-ecC----CCCCcccEEEEEE
Q psy7053 10 IEGMVSLKVDNLTYR------------TTPDDLRRVFERCGEVGDIYIP-RDR----FTRESRGFAFVRL 62 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~------------~~~~~l~~~f~~~g~i~~~~~~-~~~----~~~~~~g~~fv~f 62 (65)
.+.+.++++.++|.. .+++-|+..|..||.|..+.++ +|+ -+|+..|..|-.|
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gf 215 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGF 215 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeecc
Confidence 344568888887752 4567899999999998776554 332 4566655444433
No 128
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=76.12 E-value=6 Score=18.24 Aligned_cols=18 Identities=28% Similarity=0.802 Sum_probs=14.6
Q ss_pred HHHHHHhhccCCEEEEEE
Q psy7053 28 DDLRRVFERCGEVGDIYI 45 (65)
Q Consensus 28 ~~l~~~f~~~g~i~~~~~ 45 (65)
.+++++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 578999999999976543
No 129
>KOG0120|consensus
Probab=71.74 E-value=11 Score=24.37 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=24.8
Q ss_pred HHHHHHhhccCCEEEEEEeec-C--CCCCcccEEEEEEee
Q psy7053 28 DDLRRVFERCGEVGDIYIPRD-R--FTRESRGFAFVRLLL 64 (65)
Q Consensus 28 ~~l~~~f~~~g~i~~~~~~~~-~--~~~~~~g~~fv~f~~ 64 (65)
++++..+..||.|..+.++.+ . ...-..|-.||+|.+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas 463 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFAD 463 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecC
Confidence 346666777899988877765 2 222334667999986
No 130
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=70.92 E-value=9.1 Score=22.52 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=25.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPR 47 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~ 47 (65)
....|+|||+.++..-+..++...-.+....++.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 4567899999999999998888654444444443
No 131
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=64.11 E-value=5.4 Score=19.62 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhh
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFE 35 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~ 35 (65)
..++|-+.|+|...+++.+++.+.
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 458899999999999999987543
No 132
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=63.41 E-value=18 Score=18.17 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=29.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEE
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f 62 (65)
...+|||+++..+.+.-...+-+.++...-+ ++.. .+ .-.||.|-..
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~av-mv~~-~~-~eqG~~~~t~ 73 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVV-MAWA-TN-TESGFEFQTF 73 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEE-EEEc-CC-CCCCcEEEec
Confidence 4679999998888888777777766543323 3332 12 2238877554
No 133
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=62.82 E-value=17 Score=17.77 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=31.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEE
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f 62 (65)
..-+|||+++..+.+.-...+.+..+...-+ ++....+ ..||.|-..
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~-m~~~~~n--eqG~~~~t~ 71 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAV-MVWSDNN--EQGFDFRTL 71 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEE-EEEccCC--CCCEEEEEe
Confidence 4679999999999998888887765554333 3332112 668887654
No 134
>KOG1456|consensus
Probab=60.78 E-value=40 Score=21.37 Aligned_cols=50 Identities=20% Similarity=0.150 Sum_probs=36.3
Q ss_pred CCCCCcEEEEecCCCCC-CHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEe
Q psy7053 9 RIEGMVSLKVDNLTYRT-TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLL 63 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~ 63 (65)
....++-++|-+|.... ..+.|..+|-.||.|.++.++..+ .|-|.|+..
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemg 333 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMG 333 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcC
Confidence 33455778888998764 557788999999999999887653 245666643
No 135
>KOG4008|consensus
Probab=60.09 E-value=13 Score=21.81 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=26.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCE
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEV 40 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i 40 (65)
..+..++|+-|+|...+++.+.+....+|.+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~v 67 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHV 67 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhh
Confidence 3445789999999999999999999888743
No 136
>PF12157 DUF3591: Protein of unknown function (DUF3591); InterPro: IPR022591 This functionally uncharacterised domain is found centrally in the eukaryotic transcription initiation factor TFIID subunit 1.
Probab=58.16 E-value=24 Score=22.57 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=26.7
Q ss_pred EecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEE
Q psy7053 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (65)
Q Consensus 18 v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~ 61 (65)
+.-.||.++...+...=.+ ....+.=..|+ ||...||.||.
T Consensus 358 ~~laPWn~T~nFi~A~qgk--a~L~l~G~gDP-TG~GeGfSfir 398 (457)
T PF12157_consen 358 LQLAPWNTTKNFINATQGK--AMLQLHGEGDP-TGRGEGFSFIR 398 (457)
T ss_pred HhCCChHhHHHHHHHhccC--cEEEEecCCCC-CCCCCceEEEE
Confidence 3456888888888766221 23344444565 89889999985
No 137
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=58.04 E-value=12 Score=18.72 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=18.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEE
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIY 44 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~ 44 (65)
..|-|-+.|.. ....+.+.|+.||.|.+..
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~ 36 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHF 36 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEee
Confidence 55667777777 5566777799999987653
No 138
>PRK15464 cold shock-like protein CspH; Provisional
Probab=57.86 E-value=6.3 Score=18.40 Aligned_cols=8 Identities=25% Similarity=0.476 Sum_probs=6.5
Q ss_pred cccEEEEE
Q psy7053 54 SRGFAFVR 61 (65)
Q Consensus 54 ~~g~~fv~ 61 (65)
.||||||.
T Consensus 15 ~KGfGFI~ 22 (70)
T PRK15464 15 KSGKGFII 22 (70)
T ss_pred CCCeEEEc
Confidence 47999985
No 139
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=56.98 E-value=16 Score=21.21 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=22.8
Q ss_pred EEEEecCCCCCCHHHHHHHhhccCCEEEEEEee
Q psy7053 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPR 47 (65)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~ 47 (65)
-+.|+|+|+.++..-+..++.....+..+.++.
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~ 139 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEERDPIRDMVVMV 139 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhcCCCCCeeEEEe
Confidence 567899999999988888886422234444443
No 140
>PRK15463 cold shock-like protein CspF; Provisional
Probab=56.16 E-value=7.4 Score=18.12 Aligned_cols=8 Identities=13% Similarity=0.360 Sum_probs=6.5
Q ss_pred cccEEEEE
Q psy7053 54 SRGFAFVR 61 (65)
Q Consensus 54 ~~g~~fv~ 61 (65)
.+|||||+
T Consensus 15 ~kGfGFI~ 22 (70)
T PRK15463 15 KSGKGLIT 22 (70)
T ss_pred CCceEEEe
Confidence 47999985
No 141
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=56.11 E-value=32 Score=18.80 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=27.5
Q ss_pred CCcEEEEecCCCCC----CHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEe
Q psy7053 12 GMVSLKVDNLTYRT----TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLL 63 (65)
Q Consensus 12 ~~~~l~v~~l~~~~----~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~ 63 (65)
...+|.|.=|..+. +-..+.+.++.||.|..+.+ ..+.-|.|.|.
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-------cGrqsavVvF~ 133 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-------CGRQSAVVVFK 133 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-------cCCceEEEEeh
Confidence 34677776554443 33456677788999987743 22344667765
No 142
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=55.07 E-value=8.2 Score=18.21 Aligned_cols=8 Identities=38% Similarity=1.074 Sum_probs=6.4
Q ss_pred cccEEEEE
Q psy7053 54 SRGFAFVR 61 (65)
Q Consensus 54 ~~g~~fv~ 61 (65)
.||||||.
T Consensus 12 ~KGfGFI~ 19 (74)
T PRK09937 12 AKGFGFIC 19 (74)
T ss_pred CCCeEEEe
Confidence 47999985
No 143
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=54.54 E-value=12 Score=22.55 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=31.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecC
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDR 49 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~ 49 (65)
|.|...|+..+++-..+..-|..||.|..+++..+.
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~ 51 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSN 51 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCceeEEEEecCC
Confidence 668888999999888888889999999999988654
No 144
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=54.26 E-value=7.9 Score=17.90 Aligned_cols=8 Identities=50% Similarity=1.202 Sum_probs=6.4
Q ss_pred cccEEEEE
Q psy7053 54 SRGFAFVR 61 (65)
Q Consensus 54 ~~g~~fv~ 61 (65)
.+|||||.
T Consensus 14 ~kGyGFI~ 21 (69)
T PRK09507 14 SKGFGFIT 21 (69)
T ss_pred CCCcEEEe
Confidence 47999985
No 145
>PRK10943 cold shock-like protein CspC; Provisional
Probab=54.17 E-value=7.7 Score=17.94 Aligned_cols=8 Identities=50% Similarity=1.202 Sum_probs=6.4
Q ss_pred cccEEEEE
Q psy7053 54 SRGFAFVR 61 (65)
Q Consensus 54 ~~g~~fv~ 61 (65)
.+|||||.
T Consensus 14 ~kGfGFI~ 21 (69)
T PRK10943 14 SKGFGFIT 21 (69)
T ss_pred CCCcEEEe
Confidence 47999985
No 146
>PRK14998 cold shock-like protein CspD; Provisional
Probab=53.15 E-value=9.1 Score=17.99 Aligned_cols=8 Identities=38% Similarity=1.074 Sum_probs=6.4
Q ss_pred cccEEEEE
Q psy7053 54 SRGFAFVR 61 (65)
Q Consensus 54 ~~g~~fv~ 61 (65)
.||||||.
T Consensus 12 ~kGfGFI~ 19 (73)
T PRK14998 12 AKGFGFIC 19 (73)
T ss_pred CCceEEEe
Confidence 47999985
No 147
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=52.77 E-value=11 Score=17.59 Aligned_cols=18 Identities=6% Similarity=-0.132 Sum_probs=13.7
Q ss_pred CCcEEEEecCCCCCCHHH
Q psy7053 12 GMVSLKVDNLTYRTTPDD 29 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~ 29 (65)
.++++|+|++|...-++.
T Consensus 26 tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred cCceEEECCCChHHHHcC
Confidence 458999999998765543
No 148
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=52.62 E-value=9.6 Score=17.51 Aligned_cols=8 Identities=38% Similarity=1.074 Sum_probs=6.4
Q ss_pred cccEEEEE
Q psy7053 54 SRGFAFVR 61 (65)
Q Consensus 54 ~~g~~fv~ 61 (65)
.+|||||.
T Consensus 12 ~kGfGFI~ 19 (68)
T TIGR02381 12 AKGFGFIC 19 (68)
T ss_pred CCCeEEEe
Confidence 47999985
No 149
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=51.58 E-value=9.3 Score=17.68 Aligned_cols=8 Identities=38% Similarity=1.132 Sum_probs=6.3
Q ss_pred cccEEEEE
Q psy7053 54 SRGFAFVR 61 (65)
Q Consensus 54 ~~g~~fv~ 61 (65)
.+|||||.
T Consensus 15 ~kGfGFI~ 22 (70)
T PRK10354 15 DKGFGFIT 22 (70)
T ss_pred CCCcEEEe
Confidence 47999985
No 150
>PRK09890 cold shock protein CspG; Provisional
Probab=51.41 E-value=9.4 Score=17.71 Aligned_cols=8 Identities=38% Similarity=1.132 Sum_probs=6.4
Q ss_pred cccEEEEE
Q psy7053 54 SRGFAFVR 61 (65)
Q Consensus 54 ~~g~~fv~ 61 (65)
.+|||||.
T Consensus 15 ~kGfGFI~ 22 (70)
T PRK09890 15 DKGFGFIT 22 (70)
T ss_pred CCCcEEEe
Confidence 47999985
No 151
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=49.37 E-value=17 Score=17.88 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=27.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhc-cCCEEEEEEeecCCCCCcccEEEEEE
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFER-CGEVGDIYIPRDRFTRESRGFAFVRL 62 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~~fv~f 62 (65)
...+|||+++..+.+.-...+-+. .++. .+.+... +..-.||.|-..
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~--~~~e~G~~~~t~ 72 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWS--SNTCPGFEFFTL 72 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEe--CCCCCCcEEEec
Confidence 467999999888888776666555 3332 2223222 222446777544
No 152
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=47.84 E-value=84 Score=21.12 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=23.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPR 47 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~ 47 (65)
+.-....+|+.+++.+..++-=.++....-.+..+.+++
T Consensus 297 EGl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~r 335 (621)
T COG0445 297 EGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILR 335 (621)
T ss_pred CCCCCceEecCcccccCCHHHHHHHHHhCcccccceeec
Confidence 444457899998888877665445544433344444443
No 153
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=47.64 E-value=23 Score=21.07 Aligned_cols=32 Identities=9% Similarity=0.082 Sum_probs=22.3
Q ss_pred EEEEecCCCCCCHHHHHHHhhccCCEEEEEEe
Q psy7053 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIP 46 (65)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~ 46 (65)
.+.++|+|+.++...+..++.....+....++
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm 134 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRCAVLM 134 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCceeeee
Confidence 46789999999998888887643334344343
No 154
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=46.76 E-value=16 Score=16.26 Aligned_cols=9 Identities=22% Similarity=0.848 Sum_probs=6.9
Q ss_pred cccEEEEEE
Q psy7053 54 SRGFAFVRL 62 (65)
Q Consensus 54 ~~g~~fv~f 62 (65)
.+|||||.-
T Consensus 11 ~kgyGFI~~ 19 (66)
T PF00313_consen 11 EKGYGFITS 19 (66)
T ss_dssp TTTEEEEEE
T ss_pred CCCceEEEE
Confidence 468999864
No 155
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=45.82 E-value=15 Score=16.33 Aligned_cols=8 Identities=38% Similarity=1.119 Sum_probs=6.3
Q ss_pred cccEEEEE
Q psy7053 54 SRGFAFVR 61 (65)
Q Consensus 54 ~~g~~fv~ 61 (65)
.+|||||.
T Consensus 11 ~kGfGFI~ 18 (65)
T cd04458 11 EKGFGFIT 18 (65)
T ss_pred CCCeEEEe
Confidence 46899985
No 156
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=42.84 E-value=49 Score=17.00 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=19.9
Q ss_pred CHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 26 TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 26 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+...|.+.|..|..+. +...... .-+.|++.|+|.+
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~ 65 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNK 65 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--S
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECC
Confidence 4467888888887653 4444433 2578999999974
No 157
>KOG2591|consensus
Probab=41.62 E-value=1.1e+02 Score=20.63 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=25.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhc--cCCEEEEEE
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFER--CGEVGDIYI 45 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~--~g~i~~~~~ 45 (65)
.+.+.+.+.-||..+..+.++.+|.. |-.+..|.+
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscef 209 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEF 209 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeee
Confidence 33455677899999999999999985 555555543
No 158
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=41.56 E-value=77 Score=21.02 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=35.8
Q ss_pred CCCcEEEEecCCCCCCH-HHHHHHhhccCCEEEEEEeecCCCCCcccEEEE
Q psy7053 11 EGMVSLKVDNLTYRTTP-DDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~-~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv 60 (65)
+....+|.|-.|-+.++ ++|++-+.+. .+.+..+...+++...-||||-
T Consensus 295 ~~~P~Vf~GlyPid~~dye~LrdAleKL-~LNDasl~~E~EtS~ALGfGfR 344 (603)
T COG0481 295 EVKPMVFAGLYPVDSDDYEDLRDALEKL-QLNDASLTYEPETSQALGFGFR 344 (603)
T ss_pred cCCceEEEeecccChhHHHHHHHHHHhc-ccccceeeeccccchhccCcee
Confidence 33467999988888876 6778777654 4556666777788888888873
No 159
>KOG2318|consensus
Probab=38.95 E-value=1.1e+02 Score=20.54 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=26.5
Q ss_pred CCCCcEEEEecCCCCC-CHHHHHHHhhcc----CCEEEEEE
Q psy7053 10 IEGMVSLKVDNLTYRT-TPDDLRRVFERC----GEVGDIYI 45 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~-~~~~l~~~f~~~----g~i~~~~~ 45 (65)
....++|-|-|+.|.. ...+|.-+|..| |.|.++.+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~I 211 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKI 211 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEe
Confidence 4556899999999975 567888777654 57776654
No 160
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=38.93 E-value=68 Score=18.53 Aligned_cols=28 Identities=39% Similarity=0.558 Sum_probs=21.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhh--ccCCE
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFE--RCGEV 40 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~--~~g~i 40 (65)
..-+.++|||+..+..-+.+++. .+|..
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~ 126 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRV 126 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEE
T ss_pred CceEEEEEecccchHHHHHHHhhccccccc
Confidence 35688999999999998888886 35543
No 161
>PF14893 PNMA: PNMA
Probab=38.30 E-value=40 Score=20.66 Aligned_cols=26 Identities=8% Similarity=0.116 Sum_probs=21.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhc
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFER 36 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~ 36 (65)
+.-+.|.|.+||.++.+.++++.+..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 33477999999999999988877764
No 162
>KOG0821|consensus
Probab=37.89 E-value=28 Score=20.61 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=18.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhc
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFER 36 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~ 36 (65)
.--.|||||++++...+.+.+..
T Consensus 130 ~~H~IGNLPf~i~~pliik~l~~ 152 (326)
T KOG0821|consen 130 NVHIIGNLPFSVSTPLIIKWLEN 152 (326)
T ss_pred ceEEeccCCccccchHHHHHHhh
Confidence 34568999999998888777764
No 163
>KOG0862|consensus
Probab=37.32 E-value=24 Score=20.37 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=11.1
Q ss_pred CCCcccEEEEEEee
Q psy7053 51 TRESRGFAFVRLLL 64 (65)
Q Consensus 51 ~~~~~g~~fv~f~~ 64 (65)
+...|.|+|++|.+
T Consensus 105 ~~~~RPY~FieFD~ 118 (216)
T KOG0862|consen 105 QPASRPYAFIEFDT 118 (216)
T ss_pred CccCCCeeEEehhH
Confidence 44578899999986
No 164
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=34.20 E-value=62 Score=15.69 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=14.3
Q ss_pred EEEEEEeecCCCCCcccEEEEEEe
Q psy7053 40 VGDIYIPRDRFTRESRGFAFVRLL 63 (65)
Q Consensus 40 i~~~~~~~~~~~~~~~g~~fv~f~ 63 (65)
|.++++-.-...++.+++|-|.|.
T Consensus 3 itdVri~~~~~~~~lka~asV~~d 26 (84)
T PF04026_consen 3 ITDVRIRKIEPEGKLKAFASVTFD 26 (84)
T ss_dssp EEEEEEEETTSSSSEEEEEEEEET
T ss_pred cEEEEEEEecCCCCEEEEEEEEEC
Confidence 444544443344777788877765
No 165
>KOG0008|consensus
Probab=34.06 E-value=75 Score=23.68 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=25.7
Q ss_pred cCCCCCCHHHHH-HHhhccCCEEEEEEeecCCCCCcccEEEEE
Q psy7053 20 NLTYRTTPDDLR-RVFERCGEVGDIYIPRDRFTRESRGFAFVR 61 (65)
Q Consensus 20 ~l~~~~~~~~l~-~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~ 61 (65)
-.||.++...+. ..=. -....+.=+.|+ ||...||.||.
T Consensus 820 ~aPWNtTrnFInqa~~g--k~lLeltGvgDP-TGcGeGFSyvR 859 (1563)
T KOG0008|consen 820 LAPWNTTRNFINQATQG--KCLLELTGVGDP-TGCGEGFSYVR 859 (1563)
T ss_pred cCcchhhHHHHHHHhcc--ceeEEeecCCCC-CcccCcceeEe
Confidence 457888888774 3211 123444456675 99999999986
No 166
>KOG1996|consensus
Probab=33.66 E-value=1.2e+02 Score=18.76 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=23.5
Q ss_pred HHHHHHhhccCCEEEEEEeecCCCCCccc-EEEEEEe
Q psy7053 28 DDLRRVFERCGEVGDIYIPRDRFTRESRG-FAFVRLL 63 (65)
Q Consensus 28 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~g-~~fv~f~ 63 (65)
+...+...+||.+..|.+..++....... --||+|+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~ 337 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFE 337 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeec
Confidence 45667788899998887666553433332 3578775
No 167
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=31.59 E-value=48 Score=13.57 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=9.2
Q ss_pred CCCCHHHHHHHhhccC
Q psy7053 23 YRTTPDDLRRVFERCG 38 (65)
Q Consensus 23 ~~~~~~~l~~~f~~~g 38 (65)
.+++++.|++.|....
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3567888998887643
No 168
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=30.88 E-value=90 Score=16.54 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=18.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhc
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFER 36 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~ 36 (65)
.-+.++|+|+..+.+.+..++..
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~ 100 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEE 100 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhc
Confidence 34678999999988888888764
No 169
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=29.97 E-value=1.1e+02 Score=17.44 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=19.5
Q ss_pred EEEEecCCCCCCHHHHHHHhhccC
Q psy7053 15 SLKVDNLTYRTTPDDLRRVFERCG 38 (65)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~~g 38 (65)
-+.++|+|+.++...+.+++...+
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 377899999999999998885433
No 170
>COG1278 CspC Cold shock proteins [Transcription]
Probab=27.97 E-value=29 Score=16.24 Aligned_cols=8 Identities=38% Similarity=1.173 Sum_probs=5.8
Q ss_pred cccEEEEE
Q psy7053 54 SRGFAFVR 61 (65)
Q Consensus 54 ~~g~~fv~ 61 (65)
.+|||||.
T Consensus 12 ~KGfGFI~ 19 (67)
T COG1278 12 TKGFGFIT 19 (67)
T ss_pred CCcceEcC
Confidence 56888864
No 171
>PF15063 TC1: Thyroid cancer protein 1
Probab=27.94 E-value=49 Score=15.96 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=20.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCE
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEV 40 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i 40 (65)
++--+.|+=.+++...|+.+|..-|..
T Consensus 26 RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 26 RKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhhhhccCHHHHHHHHHHccch
Confidence 344556777788999999999988854
No 172
>KOG2068|consensus
Probab=27.12 E-value=47 Score=20.43 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=23.5
Q ss_pred cEEEEecCCCCCCHHH-HH--HHhhccCCEEEEEEeecC
Q psy7053 14 VSLKVDNLTYRTTPDD-LR--RVFERCGEVGDIYIPRDR 49 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~-l~--~~f~~~g~i~~~~~~~~~ 49 (65)
.-+|+-+|+....++. |+ +.|.+||.|.++..-.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~ 116 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDP 116 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCc
Confidence 3477778887765544 43 566778888887655543
No 173
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=26.64 E-value=30 Score=9.68 Aligned_cols=6 Identities=17% Similarity=0.174 Sum_probs=2.6
Q ss_pred EEecCC
Q psy7053 17 KVDNLT 22 (65)
Q Consensus 17 ~v~~l~ 22 (65)
||.|.|
T Consensus 2 ~i~nCP 7 (9)
T PF00220_consen 2 YIRNCP 7 (9)
T ss_pred ccccCC
Confidence 344444
No 174
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=25.85 E-value=1e+02 Score=15.45 Aligned_cols=13 Identities=0% Similarity=0.010 Sum_probs=7.5
Q ss_pred CCCcccEEEEEEe
Q psy7053 51 TRESRGFAFVRLL 63 (65)
Q Consensus 51 ~~~~~g~~fv~f~ 63 (65)
.|+-+++|-|.|.
T Consensus 14 ~g~lka~asit~d 26 (94)
T PRK13259 14 EGRMKAIVSITFD 26 (94)
T ss_pred CCcEEEEEEEEEC
Confidence 4556666666554
No 175
>KOG0738|consensus
Probab=25.31 E-value=88 Score=20.23 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=15.8
Q ss_pred CcEEEE---ecCCCCCCHHHHHHH
Q psy7053 13 MVSLKV---DNLTYRTTPDDLRRV 33 (65)
Q Consensus 13 ~~~l~v---~~l~~~~~~~~l~~~ 33 (65)
.+.||| .|+||++++...+++
T Consensus 350 ~k~VmVLAATN~PWdiDEAlrRRl 373 (491)
T KOG0738|consen 350 SKVVMVLAATNFPWDIDEALRRRL 373 (491)
T ss_pred ceeEEEEeccCCCcchHHHHHHHH
Confidence 455666 599999999877764
No 176
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=25.06 E-value=69 Score=13.32 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=19.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCC
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGE 39 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~ 39 (65)
..+++.+.........+.+.....|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 45677776657788899988888764
No 177
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=24.37 E-value=29 Score=17.01 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=17.1
Q ss_pred CCcEEEEecCCCCCCHHHHHH
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRR 32 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~ 32 (65)
+...|.+.+||..++.+.|+-
T Consensus 22 G~~~i~~~~Lp~~~d~~Sl~V 42 (104)
T PF13600_consen 22 GENEIIFEGLPPSLDPDSLRV 42 (104)
T ss_pred CceEEEEeCCCcccCCCcEEE
Confidence 336899999999999988863
No 178
>PF07230 Peptidase_S80: Bacteriophage T4-like capsid assembly protein (Gp20); InterPro: IPR010823 This family of proteins is essential for capsid assembly in the T4-like bacteriophages []. Gp20 forms a unique 12 subunit portal vertex through which DNA enters during packaging and exits during infection. The Gp20 vertex acts as an initiator for the assembly of the major capsid protein and the scaffolding proteins into a prolate icosahedron of precise dimensions. The regulation of portal protein gene expression is an important regulator of prohead assembly in bacteriophage T4 [].
Probab=22.50 E-value=1.1e+02 Score=20.04 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=24.9
Q ss_pred EEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCc
Q psy7053 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRES 54 (65)
Q Consensus 16 l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~ 54 (65)
|=|||||..-.+..++.+-..+- -+++.+..||.-
T Consensus 281 IDvGnlpk~KAeqyl~~iM~k~k----nklvYDa~TGev 315 (501)
T PF07230_consen 281 IDVGNLPKQKAEQYLRDIMNKYK----NKLVYDASTGEV 315 (501)
T ss_pred EECCCCChHhHHHHHHHHHHHhc----ceeeecCCCCee
Confidence 33589999999999999888773 234555555553
No 179
>COG4073 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.71 E-value=69 Score=18.00 Aligned_cols=18 Identities=33% Similarity=0.161 Sum_probs=12.5
Q ss_pred cEEEEecCCCC---CCHHHHH
Q psy7053 14 VSLKVDNLTYR---TTPDDLR 31 (65)
Q Consensus 14 ~~l~v~~l~~~---~~~~~l~ 31 (65)
++|||++++-+ .++..|+
T Consensus 16 r~lfV~GlHGdEgk~te~ilr 36 (198)
T COG4073 16 RRLFVGGLHGDEGKATEPILR 36 (198)
T ss_pred eeEEEeeccCcccchhhhhhh
Confidence 66999999764 4555554
No 180
>PHA02531 20 portal vertex protein; Provisional
Probab=20.61 E-value=93 Score=20.43 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=23.9
Q ss_pred EEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCC
Q psy7053 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRE 53 (65)
Q Consensus 16 l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~ 53 (65)
|=|||||..-.+..|+.+-..+-. +++.+..||.
T Consensus 284 iDVGNlPk~KAeqYlr~vm~~ykN----klvYDa~TGe 317 (514)
T PHA02531 284 IDVGNLPKRKAEEYLNNVMQRYKN----RVVYDANTGK 317 (514)
T ss_pred EEcCCCChhhHHHHHHHHHHHhhh----hEEEeCCCCe
Confidence 445899999999999988877632 2444555554
No 181
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=20.45 E-value=1.4e+02 Score=15.31 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=13.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhh
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFE 35 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~ 35 (65)
..||+|+.+ +++++.+.+.
T Consensus 2 VsiWiG~f~---s~~el~~Y~e 20 (122)
T PF14112_consen 2 VSIWIGNFK---SEDELEEYFE 20 (122)
T ss_pred eEEEEecCC---CHHHHHHHhC
Confidence 368999764 7777777764
No 182
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=20.19 E-value=85 Score=15.84 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=13.4
Q ss_pred cEEEEecCCCCCCHHHHHH
Q psy7053 14 VSLKVDNLTYRTTPDDLRR 32 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~ 32 (65)
..||+|++|...+.+.+++
T Consensus 6 ~~l~~G~~~~~~~~~~l~~ 24 (138)
T smart00195 6 PHLYLGSYSSALNLALLKK 24 (138)
T ss_pred CCeEECChhHcCCHHHHHH
Confidence 3599999987776555544
Done!