Query psy7053
Match_columns 65
No_of_seqs 103 out of 1329
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 16:56:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.8 5.8E-19 2E-23 87.0 7.6 54 11-64 17-70 (99)
2 2dnm_A SRP46 splicing factor; 99.8 9E-19 3.1E-23 86.3 8.3 62 3-64 3-64 (103)
3 3s7r_A Heterogeneous nuclear r 99.8 2.9E-18 1E-22 82.3 8.1 58 7-64 5-62 (87)
4 2dgs_A DAZ-associated protein 99.8 5.5E-18 1.9E-22 83.0 8.7 59 6-64 3-61 (99)
5 1l3k_A Heterogeneous nuclear r 99.8 2E-18 6.7E-23 92.3 7.6 64 1-64 1-64 (196)
6 3s8s_A Histone-lysine N-methyl 99.8 5.6E-18 1.9E-22 84.8 8.0 52 13-64 6-57 (110)
7 2la6_A RNA-binding protein FUS 99.8 8.5E-18 2.9E-22 82.4 8.1 62 3-64 3-72 (99)
8 2cqg_A TDP-43, TAR DNA-binding 99.8 1.5E-17 5E-22 82.0 8.5 57 8-64 10-66 (103)
9 2dh8_A DAZ-associated protein 99.8 1.1E-17 3.7E-22 82.7 8.0 58 7-64 10-67 (105)
10 1x5u_A Splicing factor 3B subu 99.7 1.5E-17 5.2E-22 82.1 8.4 59 6-64 8-66 (105)
11 2dgp_A Bruno-like 4, RNA bindi 99.7 7.9E-18 2.7E-22 83.2 7.3 59 6-64 6-64 (106)
12 1p27_B RNA-binding protein 8A; 99.7 1.3E-17 4.3E-22 82.5 8.1 58 7-64 17-74 (106)
13 2lkz_A RNA-binding protein 5; 99.7 2.6E-18 8.9E-23 84.3 5.4 56 9-64 5-62 (95)
14 2m2b_A RNA-binding protein 10; 99.7 2.5E-18 8.6E-23 88.0 5.4 58 7-64 17-76 (131)
15 1x4h_A RNA-binding protein 28; 99.7 1.8E-17 6.1E-22 82.5 8.3 58 7-64 9-66 (111)
16 1s79_A Lupus LA protein; RRM, 99.7 1.2E-17 4E-22 82.9 7.5 55 9-64 7-61 (103)
17 2cqd_A RNA-binding region cont 99.7 3.2E-17 1.1E-21 82.2 9.1 58 7-64 11-68 (116)
18 2e5h_A Zinc finger CCHC-type a 99.7 3E-17 1E-21 79.6 8.2 58 7-64 10-67 (94)
19 1oo0_B CG8781-PA, drosophila Y 99.7 2.3E-17 7.9E-22 82.1 7.8 58 7-64 20-77 (110)
20 2dgo_A Cytotoxic granule-assoc 99.7 4.6E-17 1.6E-21 81.5 8.9 58 7-64 9-66 (115)
21 2cq0_A Eukaryotic translation 99.7 2.3E-17 7.8E-22 81.3 7.7 59 6-64 8-66 (103)
22 2lea_A Serine/arginine-rich sp 99.7 2.8E-18 9.5E-23 88.5 4.5 63 2-64 36-98 (135)
23 2lxi_A RNA-binding protein 10; 99.7 1.8E-18 6.1E-23 84.0 3.6 52 13-64 1-53 (91)
24 2cqc_A Arginine/serine-rich sp 99.7 3.8E-17 1.3E-21 79.3 8.1 57 8-64 10-66 (95)
25 2rs2_A Musashi-1, RNA-binding 99.7 1.6E-17 5.5E-22 82.9 6.9 56 9-64 21-76 (109)
26 2khc_A Testis-specific RNP-typ 99.7 4.7E-17 1.6E-21 81.8 8.6 56 9-64 36-91 (118)
27 1x4e_A RNA binding motif, sing 99.7 2.7E-17 9.4E-22 78.5 7.2 54 11-64 3-56 (85)
28 2jrs_A RNA-binding protein 39; 99.7 4.1E-17 1.4E-21 81.3 8.1 58 7-64 20-77 (108)
29 2cph_A RNA binding motif prote 99.7 4.9E-17 1.7E-21 80.4 8.2 58 7-64 9-67 (107)
30 2div_A TRNA selenocysteine ass 99.7 2.8E-17 9.6E-22 80.4 7.1 56 9-64 5-61 (99)
31 1whw_A Hypothetical protein ri 99.7 6E-17 2.1E-21 79.2 8.2 55 10-64 5-59 (99)
32 2xs2_A Deleted in azoospermia- 99.7 2.3E-17 7.9E-22 81.1 6.7 55 9-64 5-59 (102)
33 1wg5_A Heterogeneous nuclear r 99.7 5.7E-17 2E-21 80.2 8.2 55 9-64 11-66 (104)
34 2dng_A Eukaryotic translation 99.7 8.5E-17 2.9E-21 79.3 8.6 57 7-64 9-65 (103)
35 2ywk_A Putative RNA-binding pr 99.7 5.3E-17 1.8E-21 78.8 7.7 57 7-64 10-66 (95)
36 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.7E-17 2E-21 77.6 7.5 54 11-64 4-57 (87)
37 2dnz_A Probable RNA-binding pr 99.7 9E-17 3.1E-21 78.0 8.3 54 11-64 3-56 (95)
38 3n9u_C Cleavage and polyadenyl 99.7 3.8E-17 1.3E-21 86.1 7.4 53 12-64 54-108 (156)
39 1wi8_A EIF-4B, eukaryotic tran 99.7 6E-17 2.1E-21 79.9 7.7 57 7-64 9-66 (104)
40 2cpz_A CUG triplet repeat RNA- 99.7 4E-17 1.4E-21 81.8 7.2 56 9-64 21-76 (115)
41 1x5s_A Cold-inducible RNA-bind 99.7 5.1E-17 1.7E-21 79.8 7.3 58 7-64 6-63 (102)
42 2dnh_A Bruno-like 5, RNA bindi 99.7 1.3E-16 4.4E-21 78.7 8.6 55 9-64 11-65 (105)
43 3mdf_A Peptidyl-prolyl CIS-tra 99.7 5.8E-17 2E-21 77.3 7.1 54 11-64 5-58 (85)
44 1x4b_A Heterogeneous nuclear r 99.7 1.1E-17 3.9E-22 83.9 4.8 52 13-64 27-78 (116)
45 4f02_A Polyadenylate-binding p 99.7 4.8E-17 1.7E-21 88.6 7.6 54 11-64 13-66 (213)
46 2hgm_A HNRPF protein, heteroge 99.7 7.1E-17 2.4E-21 82.6 7.7 55 8-64 37-93 (126)
47 2kxn_B Transformer-2 protein h 99.7 7.1E-17 2.4E-21 82.7 7.7 57 8-64 41-97 (129)
48 2dhg_A TRNA selenocysteine ass 99.7 1E-16 3.4E-21 79.0 8.0 55 9-64 5-60 (104)
49 3md1_A Nuclear and cytoplasmic 99.7 1E-16 3.5E-21 76.1 7.5 51 14-64 2-52 (83)
50 3ucg_A Polyadenylate-binding p 99.7 1.3E-16 4.5E-21 76.6 7.8 52 13-64 6-57 (89)
51 3ns6_A Eukaryotic translation 99.7 1.3E-17 4.6E-22 82.1 4.4 53 12-64 5-63 (100)
52 2do4_A Squamous cell carcinoma 99.7 1.9E-16 6.6E-21 77.6 8.5 55 9-64 13-67 (100)
53 3p5t_L Cleavage and polyadenyl 99.7 1.6E-17 5.5E-22 80.3 4.4 51 14-64 2-54 (90)
54 3ex7_B RNA-binding protein 8A; 99.7 1.1E-16 3.7E-21 81.2 7.7 58 7-64 16-73 (126)
55 2nlw_A Eukaryotic translation 99.7 1.3E-16 4.6E-21 79.0 7.8 58 5-64 7-70 (105)
56 2cq4_A RNA binding motif prote 99.7 4.6E-17 1.6E-21 81.5 6.2 52 13-64 25-76 (114)
57 2dnn_A RNA-binding protein 12; 99.7 3.7E-17 1.3E-21 81.8 5.8 59 4-64 7-65 (109)
58 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.7E-17 1.3E-21 80.3 5.7 58 7-64 6-63 (102)
59 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.1E-16 7.3E-21 81.1 8.7 56 9-64 59-114 (140)
60 1u6f_A Tcubp1, RNA-binding pro 99.7 1.3E-16 4.5E-21 82.0 7.8 56 9-64 38-93 (139)
61 1wez_A HnRNP H', FTP-3, hetero 99.7 6.7E-17 2.3E-21 79.9 6.3 55 8-64 10-64 (102)
62 2x1f_A MRNA 3'-END-processing 99.7 1.5E-16 5.2E-21 77.5 7.5 52 13-64 2-53 (96)
63 3ulh_A THO complex subunit 4; 99.7 2.1E-16 7E-21 78.2 8.1 57 7-64 23-79 (107)
64 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.9E-16 6.6E-21 83.6 8.2 57 8-64 67-123 (165)
65 2cpe_A RNA-binding protein EWS 99.7 1.6E-16 5.6E-21 79.3 7.2 57 8-64 10-74 (113)
66 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.5E-17 1.2E-21 76.8 4.4 51 14-64 1-51 (77)
67 2cpy_A RNA-binding protein 12; 99.7 1E-16 3.4E-21 80.4 6.1 55 9-64 11-66 (114)
68 2mss_A Protein (musashi1); RNA 99.7 6.4E-17 2.2E-21 75.7 4.9 50 15-64 1-50 (75)
69 2dgw_A Probable RNA-binding pr 99.7 2.8E-16 9.4E-21 75.9 7.3 57 6-64 3-59 (91)
70 2do0_A HnRNP M, heterogeneous 99.7 5.7E-16 2E-20 77.3 8.6 56 8-64 10-65 (114)
71 2fy1_A RNA-binding motif prote 99.7 2E-16 6.7E-21 79.7 6.9 55 9-64 3-57 (116)
72 1x5t_A Splicing factor 3B subu 99.7 1.1E-16 3.8E-21 77.8 5.8 53 12-64 4-57 (96)
73 1h2v_Z 20 kDa nuclear CAP bind 99.7 4.3E-16 1.5E-20 81.5 8.4 54 11-64 37-90 (156)
74 2j76_E EIF-4B, EIF4B, eukaryot 99.7 5.5E-17 1.9E-21 79.7 4.7 55 9-64 15-70 (100)
75 2d9p_A Polyadenylate-binding p 99.7 4.5E-16 1.5E-20 76.6 7.8 54 9-64 11-64 (103)
76 3q2s_C Cleavage and polyadenyl 99.7 2.6E-16 9E-21 87.0 7.7 53 12-64 67-121 (229)
77 1iqt_A AUF1, heterogeneous nuc 99.7 4.5E-17 1.6E-21 76.1 3.9 50 15-64 1-50 (75)
78 1x5o_A RNA binding motif, sing 99.7 4.7E-16 1.6E-20 77.7 7.9 54 10-64 22-75 (114)
79 2kn4_A Immunoglobulin G-bindin 99.7 3.9E-16 1.3E-20 81.6 7.9 54 11-64 68-121 (158)
80 1p1t_A Cleavage stimulation fa 99.7 3E-17 1E-21 80.9 3.4 54 11-64 6-59 (104)
81 4f25_A Polyadenylate-binding p 99.7 2.7E-16 9.1E-21 79.0 6.7 51 12-64 4-54 (115)
82 2dis_A Unnamed protein product 99.7 4.5E-16 1.6E-20 77.2 7.3 54 11-64 6-61 (109)
83 2cpf_A RNA binding motif prote 99.7 2E-16 7E-21 77.2 6.0 54 11-64 3-59 (98)
84 1sjq_A Polypyrimidine tract-bi 99.7 3.5E-16 1.2E-20 77.9 6.9 50 9-64 12-61 (105)
85 1wel_A RNA-binding protein 12; 99.7 7.4E-17 2.5E-21 81.9 4.4 55 10-64 22-76 (124)
86 2dgv_A HnRNP M, heterogeneous 99.7 8.3E-16 2.8E-20 74.2 7.9 54 9-64 4-57 (92)
87 2kt5_A RNA and export factor-b 99.7 7E-16 2.4E-20 78.1 8.0 55 9-64 31-85 (124)
88 3d2w_A TAR DNA-binding protein 99.7 3.6E-16 1.2E-20 75.6 6.6 49 11-64 9-57 (89)
89 2jwn_A Embryonic polyadenylate 99.7 3.2E-16 1.1E-20 79.3 6.6 52 13-64 36-87 (124)
90 2ki2_A SS-DNA binding protein 99.7 6.6E-17 2.3E-21 77.9 3.9 51 14-64 2-52 (90)
91 2cjk_A Nuclear polyadenylated 99.7 3.1E-16 1.1E-20 82.0 6.7 53 12-64 2-54 (167)
92 2hgl_A HNRPF protein, heteroge 99.7 1.6E-16 5.4E-21 82.2 5.5 55 9-64 40-97 (136)
93 2dnl_A Cytoplasmic polyadenyla 99.7 1.5E-16 5.2E-21 79.8 5.2 54 10-64 5-61 (114)
94 2lmi_A GRSF-1, G-rich sequence 99.7 1.3E-16 4.5E-21 79.2 4.9 56 8-64 6-64 (107)
95 2cq3_A RNA-binding protein 9; 99.7 1.9E-15 6.3E-20 74.4 9.0 55 8-64 10-64 (103)
96 2db1_A Heterogeneous nuclear r 99.7 2.2E-16 7.6E-21 79.7 5.7 55 9-64 13-70 (118)
97 2cqp_A RNA-binding protein 12; 99.7 1.4E-16 4.8E-21 77.8 4.8 56 9-64 11-66 (98)
98 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.8E-15 6E-20 74.4 8.7 55 8-64 10-64 (103)
99 2j8a_A Histone-lysine N-methyl 99.7 3.9E-16 1.3E-20 80.2 6.1 51 14-64 3-57 (136)
100 2krb_A Eukaryotic translation 99.7 5E-16 1.7E-20 73.7 6.1 49 14-64 2-56 (81)
101 4a8x_A RNA-binding protein wit 99.6 5.7E-16 1.9E-20 74.1 5.9 53 12-64 3-56 (88)
102 2ad9_A Polypyrimidine tract-bi 99.6 1E-15 3.5E-20 77.7 7.0 50 9-64 27-76 (119)
103 2ek1_A RNA-binding protein 12; 99.6 2.1E-16 7.3E-21 76.7 3.9 54 11-64 13-66 (95)
104 2hgn_A Heterogeneous nuclear r 99.6 2.7E-16 9.2E-21 81.6 3.7 54 9-64 42-95 (139)
105 3nmr_A Cugbp ELAV-like family 99.6 2E-15 6.7E-20 79.2 6.9 53 12-64 2-56 (175)
106 2cq1_A PTB-like protein L; RRM 99.6 4.1E-15 1.4E-19 73.5 7.7 49 10-64 12-60 (101)
107 2dgx_A KIAA0430 protein; RRM d 99.6 3.5E-15 1.2E-19 72.8 7.3 52 10-64 6-61 (96)
108 2dha_A FLJ20171 protein; RRM d 99.6 6.3E-16 2.2E-20 78.8 4.7 53 11-64 21-77 (123)
109 3r27_A HnRNP L, heterogeneous 99.6 5.4E-15 1.8E-19 73.1 7.8 50 9-64 17-66 (100)
110 2err_A Ataxin-2-binding protei 99.6 2.5E-15 8.5E-20 74.8 6.7 55 8-64 24-78 (109)
111 1wex_A Hypothetical protein (r 99.6 6.2E-15 2.1E-19 73.2 8.1 50 9-64 11-60 (104)
112 1fxl_A Paraneoplastic encephal 99.6 4.3E-15 1.5E-19 77.3 7.7 52 13-64 2-53 (167)
113 1x4a_A Splicing factor, argini 99.6 1E-14 3.5E-19 72.4 8.5 53 9-64 18-70 (109)
114 1b7f_A Protein (SXL-lethal pro 99.6 3.8E-15 1.3E-19 77.8 6.6 53 12-64 2-54 (168)
115 1x4c_A Splicing factor, argini 99.6 1.3E-14 4.3E-19 72.1 8.1 51 7-64 9-59 (108)
116 2f3j_A RNA and export factor b 99.6 5.5E-15 1.9E-19 79.1 7.1 53 11-64 86-138 (177)
117 3md3_A Nuclear and cytoplasmic 99.6 2E-14 6.9E-19 74.7 9.0 57 8-64 82-138 (166)
118 2a3j_A U1 small nuclear ribonu 99.6 9.5E-15 3.3E-19 74.8 7.5 54 8-64 24-81 (127)
119 2cpi_A CCR4-NOT transcription 99.6 5E-15 1.7E-19 73.9 6.3 56 9-64 11-72 (111)
120 1wf0_A TDP-43, TAR DNA-binding 99.6 2.2E-15 7.7E-20 72.3 4.7 48 12-64 4-51 (88)
121 2g4b_A Splicing factor U2AF 65 99.6 1.3E-14 4.3E-19 76.1 8.0 55 10-64 91-145 (172)
122 2ytc_A PRE-mRNA-splicing facto 99.6 2E-14 6.9E-19 68.4 8.0 53 6-64 5-57 (85)
123 1l3k_A Heterogeneous nuclear r 99.6 1E-14 3.5E-19 77.8 7.6 53 12-64 103-155 (196)
124 3pgw_S U1-70K; protein-RNA com 99.6 9.2E-15 3.1E-19 86.8 7.9 54 11-64 100-153 (437)
125 1fj7_A Nucleolin RBD1, protein 99.6 3.5E-16 1.2E-20 76.7 1.6 53 11-64 15-67 (101)
126 1x4d_A Matrin 3; structural ge 99.6 8.9E-15 3.1E-19 72.5 6.6 50 9-64 11-61 (102)
127 2qfj_A FBP-interacting repress 99.6 1.1E-14 3.8E-19 78.6 7.5 52 13-64 28-79 (216)
128 2cpx_A Hypothetical protein FL 99.6 8.3E-16 2.9E-20 76.8 2.6 56 9-64 21-76 (115)
129 2fc9_A NCL protein; structure 99.6 1.4E-14 4.6E-19 71.0 6.9 53 8-64 10-62 (101)
130 2lcw_A RNA-binding protein FUS 99.3 1.8E-16 6E-21 79.6 0.0 55 10-64 4-66 (116)
131 3lqv_A PRE-mRNA branch site pr 99.6 3.1E-14 1E-18 71.1 7.6 51 11-64 6-56 (115)
132 2fc8_A NCL protein; structure 99.6 1.6E-14 5.4E-19 70.9 6.3 55 7-64 9-63 (102)
133 1b7f_A Protein (SXL-lethal pro 99.6 3.7E-14 1.3E-18 74.0 7.8 56 9-64 85-140 (168)
134 1fxl_A Paraneoplastic encephal 99.5 2.7E-14 9.2E-19 74.3 7.1 56 9-64 84-139 (167)
135 2yh0_A Splicing factor U2AF 65 99.5 5.9E-14 2E-18 74.9 8.5 54 11-64 112-165 (198)
136 2voo_A Lupus LA protein; RNA-b 99.5 3E-14 1E-18 77.0 7.3 51 13-64 109-159 (193)
137 1x4f_A Matrin 3; structural ge 99.5 1.8E-14 6E-19 72.5 5.8 49 10-64 22-71 (112)
138 2wbr_A GW182, gawky, LD47780P; 99.5 2.5E-14 8.4E-19 69.3 5.8 47 12-64 6-52 (89)
139 2dnq_A RNA-binding protein 4B; 99.5 7.5E-14 2.5E-18 67.2 7.5 47 10-64 5-51 (90)
140 1nu4_A U1A RNA binding domain; 99.5 6.7E-15 2.3E-19 71.6 3.8 53 9-64 4-60 (97)
141 3md3_A Nuclear and cytoplasmic 99.5 2.6E-14 8.8E-19 74.3 6.2 50 14-64 1-50 (166)
142 2qfj_A FBP-interacting repress 99.5 5.9E-14 2E-18 75.7 7.8 53 12-64 124-176 (216)
143 2cpj_A Non-POU domain-containi 99.5 5.4E-14 1.9E-18 68.7 7.0 50 9-64 11-60 (99)
144 2i2y_A Fusion protein consists 99.5 4.7E-14 1.6E-18 73.3 6.8 51 9-64 69-119 (150)
145 1why_A Hypothetical protein ri 99.5 8.6E-14 2.9E-18 67.8 7.2 50 9-64 13-62 (97)
146 2cjk_A Nuclear polyadenylated 99.5 2E-14 6.9E-19 75.0 5.3 52 13-64 87-138 (167)
147 2la4_A Nuclear and cytoplasmic 99.5 5.6E-14 1.9E-18 68.8 6.6 48 11-64 25-72 (101)
148 2e5g_A U6 snRNA-specific termi 99.5 1.7E-13 5.7E-18 66.4 8.1 50 10-64 5-54 (94)
149 2jvr_A Nucleolar protein 3; RN 99.5 3.1E-14 1.1E-18 71.4 5.5 51 10-64 25-76 (111)
150 2dgt_A RNA-binding protein 30; 99.5 1.1E-13 3.8E-18 66.8 7.2 52 5-64 2-53 (92)
151 3beg_B Splicing factor, argini 99.5 2.8E-14 9.6E-19 71.6 5.1 49 9-64 12-60 (115)
152 1x4g_A Nucleolysin TIAR; struc 99.5 9.9E-14 3.4E-18 68.8 6.8 49 10-64 22-70 (109)
153 3nmr_A Cugbp ELAV-like family 99.5 1.3E-13 4.3E-18 72.3 7.5 52 12-64 94-145 (175)
154 2e5j_A Methenyltetrahydrofolat 99.5 8E-14 2.8E-18 67.9 6.3 51 9-64 15-65 (97)
155 1whx_A Hypothetical protein ri 99.5 3.5E-14 1.2E-18 70.9 5.0 48 11-64 8-55 (111)
156 2jvo_A Nucleolar protein 3; nu 99.5 6.7E-14 2.3E-18 69.6 5.9 48 9-64 27-74 (108)
157 2hvz_A Splicing factor, argini 99.5 4.6E-14 1.6E-18 69.1 5.2 46 14-64 1-46 (101)
158 2dgu_A Heterogeneous nuclear r 99.5 1.4E-13 4.9E-18 67.6 7.0 50 7-64 5-54 (103)
159 1fjc_A Nucleolin RBD2, protein 99.5 2.3E-14 7.9E-19 69.6 4.0 51 9-64 12-62 (96)
160 2xnq_A Nuclear polyadenylated 99.5 2.3E-13 7.8E-18 66.5 7.3 48 9-64 18-66 (97)
161 1sjr_A Polypyrimidine tract-bi 99.5 2.1E-13 7.3E-18 72.4 7.2 52 9-64 42-93 (164)
162 2dnp_A RNA-binding protein 14; 99.5 2.4E-13 8.3E-18 65.3 6.7 48 9-64 5-52 (90)
163 1wf1_A RNA-binding protein RAL 99.5 2.4E-13 8.2E-18 67.5 6.7 45 12-64 26-71 (110)
164 2kvi_A Nuclear polyadenylated 99.5 2.3E-13 7.8E-18 66.2 6.2 48 9-64 6-54 (96)
165 3pgw_A U1-A; protein-RNA compl 99.5 3.7E-13 1.3E-17 75.4 7.6 53 9-64 5-61 (282)
166 3egn_A RNA-binding protein 40; 99.5 1.1E-14 3.9E-19 75.2 1.3 55 10-64 42-101 (143)
167 3smz_A Protein raver-1, ribonu 99.5 6E-13 2.1E-17 74.6 8.1 53 12-64 94-146 (284)
168 2hzc_A Splicing factor U2AF 65 99.4 4E-13 1.4E-17 64.0 6.3 48 11-64 4-62 (87)
169 2adc_A Polypyrimidine tract-bi 99.4 3.2E-13 1.1E-17 74.1 6.6 51 9-64 30-81 (229)
170 2cq2_A Hypothetical protein LO 99.4 2.1E-13 7.2E-18 68.7 5.2 48 11-64 23-72 (114)
171 2e44_A Insulin-like growth fac 99.4 4E-13 1.4E-17 65.1 6.0 52 9-64 11-63 (96)
172 2cpd_A Apobec-1 stimulating pr 99.4 2.1E-12 7.3E-17 63.0 8.3 47 10-64 12-60 (99)
173 3sde_A Paraspeckle component 1 99.4 7.2E-13 2.4E-17 73.9 7.3 51 13-64 96-146 (261)
174 4f02_A Polyadenylate-binding p 99.4 1.1E-12 3.6E-17 71.4 6.8 50 13-64 103-152 (213)
175 2cqh_A IGF-II mRNA-binding pro 99.4 2.3E-13 8E-18 65.7 3.6 48 10-64 5-53 (93)
176 2ghp_A U4/U6 snRNA-associated 99.4 1.1E-12 3.6E-17 73.8 6.7 55 8-64 36-90 (292)
177 3tyt_A Heterogeneous nuclear r 99.4 1.3E-12 4.4E-17 71.1 6.8 48 12-64 3-51 (205)
178 1wg1_A KIAA1579 protein, homol 99.4 5.6E-13 1.9E-17 63.9 4.2 46 12-64 4-49 (88)
179 2ghp_A U4/U6 snRNA-associated 99.4 1.7E-12 5.8E-17 73.0 6.7 54 11-64 208-263 (292)
180 3zzy_A Polypyrimidine tract-bi 99.4 3E-12 1E-16 65.8 7.0 50 10-64 25-75 (130)
181 1x5p_A Negative elongation fac 99.4 5.3E-12 1.8E-16 61.4 7.5 48 9-64 11-58 (97)
182 1fje_B Nucleolin RBD12, protei 99.4 3.3E-12 1.1E-16 67.1 6.7 50 10-64 96-145 (175)
183 3tyt_A Heterogeneous nuclear r 99.3 1.4E-12 4.9E-17 70.9 5.1 50 13-64 123-174 (205)
184 2e5i_A Heterogeneous nuclear r 99.3 1.2E-11 4.1E-16 63.1 8.1 45 14-64 26-71 (124)
185 1fje_B Nucleolin RBD12, protei 99.3 1.3E-13 4.4E-18 72.6 0.6 55 9-64 9-63 (175)
186 3sde_A Paraspeckle component 1 99.3 4.8E-12 1.7E-16 70.6 6.3 48 11-64 20-67 (261)
187 3smz_A Protein raver-1, ribonu 99.3 6.9E-12 2.3E-16 70.3 6.5 54 10-64 181-235 (284)
188 3pgw_A U1-A; protein-RNA compl 99.3 1.7E-11 5.7E-16 68.6 7.9 49 11-64 205-253 (282)
189 1qm9_A Polypyrimidine tract-bi 99.3 3.5E-12 1.2E-16 68.3 4.3 47 13-64 3-50 (198)
190 3u1l_A PRE-mRNA-splicing facto 99.3 7.3E-12 2.5E-16 69.8 5.5 49 10-64 131-188 (240)
191 2bz2_A Negative elongation fac 99.2 2E-11 6.9E-16 61.8 5.4 47 10-64 36-82 (121)
192 3tht_A Alkylated DNA repair pr 99.2 2E-11 7E-16 71.0 5.9 48 11-64 16-65 (345)
193 2yh0_A Splicing factor U2AF 65 99.2 4.6E-11 1.6E-15 63.6 6.4 47 12-64 3-60 (198)
194 2pe8_A Splicing factor 45; RRM 99.2 1.6E-10 5.5E-15 57.3 7.4 53 12-64 7-65 (105)
195 2g4b_A Splicing factor U2AF 65 99.2 7E-11 2.4E-15 61.7 6.3 47 12-64 3-60 (172)
196 2d9o_A DNAJ (HSP40) homolog, s 99.1 8.7E-10 3E-14 54.3 8.6 50 10-64 7-63 (100)
197 2diu_A KIAA0430 protein; struc 99.1 2.6E-10 8.9E-15 55.8 6.4 42 13-64 8-55 (96)
198 1qm9_A Polypyrimidine tract-bi 99.1 2.1E-10 7.2E-15 61.3 5.6 47 13-64 120-167 (198)
199 2adc_A Polypyrimidine tract-bi 99.1 4.6E-10 1.6E-14 61.5 6.9 47 13-64 151-198 (229)
200 2dit_A HIV TAT specific factor 99.0 3E-09 1E-13 52.9 6.9 53 8-64 10-73 (112)
201 1owx_A Lupus LA protein, SS-B, 98.9 5.5E-09 1.9E-13 53.0 5.7 50 9-64 14-64 (121)
202 1jmt_A Splicing factor U2AF 35 98.9 3.9E-10 1.3E-14 55.7 1.3 46 18-64 20-77 (104)
203 3v4m_A Splicing factor U2AF 65 98.8 2E-08 6.7E-13 49.6 5.6 52 13-64 5-68 (105)
204 3ue2_A Poly(U)-binding-splicin 98.7 4.1E-08 1.4E-12 49.5 5.1 53 12-64 19-80 (118)
205 3s6e_A RNA-binding protein 39; 98.1 2.1E-06 7.2E-11 43.0 3.2 48 13-64 7-64 (114)
206 3dxb_A Thioredoxin N-terminall 97.9 2.6E-05 8.8E-10 42.4 5.2 39 26-64 142-184 (222)
207 2l9w_A U4/U6 snRNA-associated- 97.3 0.0017 5.8E-08 32.5 5.9 49 10-64 18-71 (117)
208 2dnr_A Synaptojanin-1; RRM dom 97.2 0.0022 7.5E-08 31.0 5.6 44 13-64 7-58 (91)
209 3ctr_A Poly(A)-specific ribonu 96.6 0.0095 3.2E-07 29.2 5.1 41 16-64 8-48 (101)
210 1whv_A Poly(A)-specific ribonu 96.6 0.018 6.2E-07 28.2 6.0 42 14-64 17-58 (100)
211 1ufw_A Synaptojanin 2; RNP dom 96.1 0.0099 3.4E-07 28.9 3.7 44 13-64 15-67 (95)
212 1uw4_A UPF3X; nonsense mediate 95.9 0.047 1.6E-06 26.2 6.8 51 14-64 2-54 (91)
213 3pq1_A Poly(A) RNA polymerase; 95.6 0.015 5E-07 35.4 3.6 47 12-64 52-98 (464)
214 2l08_A Regulator of nonsense t 92.0 0.19 6.7E-06 24.4 3.0 52 13-64 9-62 (97)
215 2dhx_A Poly (ADP-ribose) polym 90.7 0.83 2.8E-05 22.5 7.1 45 12-64 7-56 (104)
216 3d45_A Poly(A)-specific ribonu 69.8 17 0.00057 22.4 6.9 41 14-63 441-481 (507)
217 3fut_A Dimethyladenosine trans 69.2 10 0.00035 21.3 4.1 34 14-48 111-144 (271)
218 1wwh_A Nucleoporin 35, nucleop 65.6 11 0.00038 18.8 5.7 47 11-64 22-68 (119)
219 3uzu_A Ribosomal RNA small sub 62.7 4 0.00014 23.0 1.7 35 14-48 115-149 (279)
220 2k5n_A Putative cold-shock pro 56.5 5.5 0.00019 18.1 1.3 9 54-62 13-21 (74)
221 1qyr_A KSGA, high level kasuga 55.4 19 0.00064 19.9 3.6 32 15-46 92-123 (252)
222 3tqs_A Ribosomal RNA small sub 54.8 4.6 0.00016 22.4 1.0 33 16-48 99-131 (255)
223 3ts2_A Protein LIN-28 homolog 54.7 2.6 8.9E-05 21.7 0.0 10 54-63 20-29 (148)
224 3cam_A Cold-shock domain famil 54.6 6.2 0.00021 17.5 1.3 9 54-62 12-20 (67)
225 2kcm_A Cold shock domain famil 54.4 6.2 0.00021 17.9 1.3 9 54-62 11-19 (74)
226 1c9o_A CSPB, cold-shock protei 54.1 6.4 0.00022 17.3 1.3 9 54-62 12-20 (66)
227 3a0j_A Cold shock protein; OB- 52.4 7 0.00024 17.6 1.3 8 54-61 12-19 (73)
228 1h95_A CSD, Y-box binding prot 51.5 7.3 0.00025 17.8 1.3 9 54-62 19-27 (79)
229 1g6p_A Cold shock protein TMCS 51.5 7.5 0.00026 17.1 1.3 9 54-62 11-19 (66)
230 3ftd_A Dimethyladenosine trans 51.3 15 0.0005 20.2 2.7 32 15-46 97-128 (249)
231 3i2z_B RNA chaperone, negative 49.8 8.2 0.00028 17.2 1.3 9 54-62 16-24 (71)
232 3ulj_A LIN28B, DNA-binding pro 49.5 8.1 0.00028 18.3 1.3 8 54-61 19-26 (90)
233 1i4w_A Mitochondrial replicati 48.6 19 0.00064 21.2 2.9 21 15-35 144-164 (353)
234 2yty_A Cold shock domain-conta 45.1 11 0.00036 17.7 1.3 8 55-62 28-35 (88)
235 2ytx_A Cold shock domain-conta 44.5 11 0.00037 18.0 1.3 9 54-62 27-35 (97)
236 1wfq_A UNR protein; beta-barre 43.9 11 0.00039 17.7 1.3 8 55-62 28-35 (89)
237 3aqq_A Calcium-regulated heat 40.6 13 0.00044 19.3 1.3 10 54-63 73-82 (147)
238 2ytv_A Cold shock domain-conta 40.1 12 0.00042 17.1 1.1 9 54-62 17-25 (79)
239 1x65_A UNR protein; cell-free 38.0 9.2 0.00032 18.0 0.5 8 55-62 18-25 (89)
240 2lss_A Cold shock-like protein 43.8 6.9 0.00024 17.4 0.0 8 54-61 15-22 (70)
241 2i9x_A Putative septation prot 35.8 38 0.0013 15.9 3.5 25 39-63 5-29 (87)
242 2ki0_A DS119; beta-alpha-beta, 33.0 5.8 0.0002 15.1 -0.6 12 11-22 3-14 (36)
243 3mfb_A Uncharacterized protein 32.9 57 0.0019 17.1 4.8 36 25-60 3-41 (157)
244 2jsh_A Appetite-regulating hor 30.9 19 0.00064 13.1 0.7 21 20-40 2-22 (26)
245 2i9z_A Putative septation prot 29.6 56 0.0019 16.0 3.5 25 39-63 5-29 (105)
246 2ia9_A Putative septation prot 29.5 54 0.0019 15.8 3.5 25 39-63 5-29 (100)
247 2bh8_A 1B11; transcription, mo 25.7 34 0.0012 16.2 1.3 9 54-62 27-35 (101)
248 1wey_A Calcipressin 1; structu 24.6 71 0.0024 15.5 3.2 33 12-44 4-41 (104)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=86.98 Aligned_cols=54 Identities=31% Similarity=0.450 Sum_probs=50.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
-++++|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~ 70 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVT 70 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECC
Confidence 345899999999999999999999999999999999999999999999999976
No 2
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9e-19 Score=86.35 Aligned_cols=62 Identities=61% Similarity=1.098 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 3 YGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 3 ~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
++++++..+..++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 3 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 64 (103)
T 2dnm_A 3 SGSSGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHD 64 (103)
T ss_dssp CCCCSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESS
T ss_pred CCCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECC
Confidence 56677777888999999999999999999999999999999999998899999999999986
No 3
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=2.9e-18 Score=82.25 Aligned_cols=58 Identities=33% Similarity=0.425 Sum_probs=52.5
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+......++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 62 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 62 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECC
Confidence 3455667899999999999999999999999999999999999899999999999986
No 4
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.5e-18 Score=83.00 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=53.8
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 6 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+.......++|||+|||.++++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 3 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 61 (99)
T 2dgs_A 3 SGSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 61 (99)
T ss_dssp CCCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECC
Confidence 44455667999999999999999999999999999999999998899999999999975
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=2e-18 Score=92.27 Aligned_cols=64 Identities=36% Similarity=0.544 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 1 ~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
|+.+.++.+.+..++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+
T Consensus 1 ms~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 64 (196)
T 1l3k_A 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 64 (196)
T ss_dssp -------CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCcccCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCC
Confidence 6777778788888999999999999999999999999999999999999899999999999975
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=5.6e-18 Score=84.84 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=50.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++|||+|||+++++++|+++|+.||.|.++.++.++.+++++|||||+|.+
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~ 57 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTS 57 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECC
Confidence 4899999999999999999999999999999999999999999999999975
No 7
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=8.5e-18 Score=82.38 Aligned_cols=62 Identities=19% Similarity=0.119 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEE--------EEEeecCCCCCcccEEEEEEee
Q psy7053 3 YGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD--------IYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 3 ~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....+.......+|||+|||+++++++|+++|+.+|.|.. +.++.++.+++++|||||+|.+
T Consensus 3 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~ 72 (99)
T 2la6_A 3 HHHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 72 (99)
T ss_dssp SSCSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSS
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECC
Confidence 3445556667799999999999999999999999999998 9999998899999999999975
No 8
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=81.96 Aligned_cols=57 Identities=33% Similarity=0.480 Sum_probs=52.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
......++|||+|||+.+++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTE 66 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESS
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECC
Confidence 344556899999999999999999999999999999999998899999999999975
No 9
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=82.69 Aligned_cols=58 Identities=36% Similarity=0.525 Sum_probs=53.5
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+...+..++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 67 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 67 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESS
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECC
Confidence 3455667999999999999999999999999999999999998899999999999986
No 10
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=82.10 Aligned_cols=59 Identities=25% Similarity=0.430 Sum_probs=53.7
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 6 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
++......++|||+|||+.+++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 66 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 66 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESS
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECC
Confidence 34455667999999999999999999999999999999999998899999999999976
No 11
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=7.9e-18 Score=83.24 Aligned_cols=59 Identities=22% Similarity=0.399 Sum_probs=53.6
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 6 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
++......++|||+|||..+++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 64 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCE 64 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECC
Confidence 34455666899999999999999999999999999999999998899999999999975
No 12
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=82.52 Aligned_cols=58 Identities=26% Similarity=0.330 Sum_probs=52.7
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+......++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 74 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYET 74 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 3344556899999999999999999999999999999999999999999999999976
No 13
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=84.27 Aligned_cols=56 Identities=27% Similarity=0.421 Sum_probs=50.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCC--EEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGE--VGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
......+|||+|||+++++++|++.|++||. +.+++++.++.+++++|||||+|.+
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~ 62 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSS 62 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSS
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECC
Confidence 3455689999999999999999999999995 5688999999999999999999986
No 14
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=88.05 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=52.0
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEE--EEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD--IYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+......++|||+|||+++++++|+++|..||.|.. ++++.++.+|+++|||||+|.+
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~ 76 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLST 76 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECC
Confidence 334455689999999999999999999999999966 8999999999999999999975
No 15
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=82.46 Aligned_cols=58 Identities=19% Similarity=0.387 Sum_probs=53.1
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+......++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMT 66 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESS
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECC
Confidence 3455667899999999999999999999999999999999999999999999999975
No 16
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=82.88 Aligned_cols=55 Identities=22% Similarity=0.225 Sum_probs=50.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+++++++|+++|+.||.|..+.++.++. +.++|||||+|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~ 61 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDS 61 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESS
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECC
Confidence 344558999999999999999999999999999999999986 9999999999975
No 17
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-17 Score=82.24 Aligned_cols=58 Identities=31% Similarity=0.508 Sum_probs=52.9
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+......++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 68 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 68 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESS
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECC
Confidence 3445566899999999999999999999999999999999998899999999999975
No 18
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3e-17 Score=79.58 Aligned_cols=58 Identities=33% Similarity=0.489 Sum_probs=52.8
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.......++|||+|||..+++++|+++|..+|.|..+.++.++.+++++|||||+|.+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 67 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 67 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESC
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECC
Confidence 3445566899999999999999999999999999999999998899999999999976
No 19
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=2.3e-17 Score=82.06 Aligned_cols=58 Identities=28% Similarity=0.340 Sum_probs=52.8
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+......++|||+|||..+++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 77 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYET 77 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECC
Confidence 3445566899999999999999999999999999999999998899999999999976
No 20
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=4.6e-17 Score=81.50 Aligned_cols=58 Identities=22% Similarity=0.415 Sum_probs=53.0
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+.+....++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 66 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN 66 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECC
Confidence 3455666899999999999999999999999999999999998899999999999975
No 21
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=81.27 Aligned_cols=59 Identities=32% Similarity=0.631 Sum_probs=53.7
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 6 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+..+.+..++|||+|||.++++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 66 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR 66 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECC
Confidence 34455667999999999999999999999999999999999998899999999999975
No 22
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=2.8e-18 Score=88.47 Aligned_cols=63 Identities=78% Similarity=1.341 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 2 ~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+++.++++....++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 36 ~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~ 98 (135)
T 2lea_A 36 SYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 98 (135)
T ss_dssp CSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSC
T ss_pred CcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECC
Confidence 456667777778999999999999999999999999999999999998899999999999976
No 23
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-18 Score=84.05 Aligned_cols=52 Identities=27% Similarity=0.436 Sum_probs=48.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccC-CEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCG-EVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+.+|||+|||+++++++|+++|+.+| .|..++++.++.+++++|||||+|.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~ 53 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH 53 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecC
Confidence 36899999999999999999999999 79999999999999999999999976
No 24
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.8e-17 Score=79.29 Aligned_cols=57 Identities=39% Similarity=0.513 Sum_probs=52.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...+..++|||+|||..+++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 66 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 66 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESS
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECC
Confidence 344556899999999999999999999999999999999999899999999999976
No 25
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=1.6e-17 Score=82.88 Aligned_cols=56 Identities=32% Similarity=0.540 Sum_probs=49.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+..++|||+|||+++++++|+++|..||.|..+.++.++.+|.++|||||+|.+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~ 76 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 76 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECC
Confidence 44556899999999999999999999999999999999998899999999999975
No 26
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=4.7e-17 Score=81.78 Aligned_cols=56 Identities=25% Similarity=0.167 Sum_probs=51.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+....++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 91 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDN 91 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECC
Confidence 34455899999999999999999999999999999999998899999999999986
No 27
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.7e-17 Score=78.54 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=50.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||+++++++|+++|..+|.|..+.++.++.++.++|||||+|.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 56 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDS 56 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECC
Confidence 345899999999999999999999999999999999998899999999999976
No 28
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=4.1e-17 Score=81.34 Aligned_cols=58 Identities=29% Similarity=0.440 Sum_probs=53.1
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
++.....++|||+|||..+++++|+++|+.||.|..+.++.++.++.++|||||+|.+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~ 77 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 77 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECC
Confidence 4455666899999999999999999999999999999999998899999999999975
No 29
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.9e-17 Score=80.43 Aligned_cols=58 Identities=24% Similarity=0.552 Sum_probs=52.5
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeec-CCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRD-RFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~g~~fv~f~~ 64 (65)
+......++|||+|||+.+++++|+++|..||.|..+.++.+ +.+++++|||||+|.+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~ 67 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFIT 67 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESS
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECC
Confidence 345556689999999999999999999999999999999988 7899999999999976
No 30
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=80.39 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=51.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEE-EEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVG-DIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+++++++|+++|..+|.|. .+.++.++.+++++|||||+|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~ 61 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFAD 61 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCC
Confidence 345569999999999999999999999999999 99999999999999999999975
No 31
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6e-17 Score=79.21 Aligned_cols=55 Identities=33% Similarity=0.672 Sum_probs=51.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+|||+.+++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 59 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMF 59 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECC
Confidence 4556899999999999999999999999999999999998899999999999976
No 32
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.72 E-value=2.3e-17 Score=81.13 Aligned_cols=55 Identities=27% Similarity=0.401 Sum_probs=50.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+++++++|+++|..||.|..+.++.++ +++++|||||+|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~ 59 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYN 59 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECC
Confidence 34455899999999999999999999999999999999998 99999999999976
No 33
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.7e-17 Score=80.20 Aligned_cols=55 Identities=20% Similarity=0.342 Sum_probs=49.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEE-EEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD-IYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+++++++|+++|..+|.|.. +.++.+ .+++++|||||+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~ 66 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFAS 66 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECC
Confidence 4455689999999999999999999999999987 778887 799999999999976
No 34
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=8.5e-17 Score=79.26 Aligned_cols=57 Identities=23% Similarity=0.364 Sum_probs=51.5
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+......++|||+|||+++++++|+++|..+| |..+.++.++.+++++|||||+|.+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~ 65 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDE 65 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESS
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECC
Confidence 33455568999999999999999999999996 9999999999899999999999976
No 35
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=5.3e-17 Score=78.84 Aligned_cols=57 Identities=26% Similarity=0.371 Sum_probs=50.6
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+...+..++|||+|||+.+++++|+++|..+|.|..+.++.++. ++++|||||+|.+
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~ 66 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKH 66 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESS
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECC
Confidence 44556668999999999999999999999999999999999874 9999999999986
No 36
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=5.7e-17 Score=77.58 Aligned_cols=54 Identities=22% Similarity=0.383 Sum_probs=49.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||.++++++|+++|+.+|.|..+.++.++.+++++|||||+|.+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 57 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN 57 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECC
Confidence 345899999999999999999999999999999999998899999999999975
No 37
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=9e-17 Score=78.02 Aligned_cols=54 Identities=31% Similarity=0.538 Sum_probs=50.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||.++++++|+++|..+|.|..+.++.++.+++++|||||+|.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 56 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSD 56 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECC
Confidence 345899999999999999999999999999999999998899999999999976
No 38
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=86.06 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=49.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccC--CEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCG--EVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+|||+++++++|+++|..|| .|..+.++.++.+|+++|||||+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~ 108 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVAS 108 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECC
Confidence 347999999999999999999999999 99999999999999999999999976
No 39
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6e-17 Score=79.92 Aligned_cols=57 Identities=16% Similarity=0.324 Sum_probs=51.1
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCC-CCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFT-RESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~~fv~f~~ 64 (65)
+......++|||+|||+.+++++|+++|..+| |..+.++.++.+ ++++|||||+|.+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~ 66 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFED 66 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESS
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECC
Confidence 33445568999999999999999999999999 999999999877 9999999999975
No 40
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.72 E-value=4e-17 Score=81.78 Aligned_cols=56 Identities=23% Similarity=0.165 Sum_probs=51.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 76 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN 76 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECC
Confidence 33455899999999999999999999999999999999998899999999999975
No 41
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.1e-17 Score=79.85 Aligned_cols=58 Identities=29% Similarity=0.499 Sum_probs=52.9
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.......++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 63 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN 63 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSS
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECC
Confidence 3345566999999999999999999999999999999999998899999999999976
No 42
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=1.3e-16 Score=78.74 Aligned_cols=55 Identities=25% Similarity=0.343 Sum_probs=50.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||..+++++|+++|..||.|..+.++.++ +++++|||||+|.+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~ 65 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSS 65 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCC
Confidence 33456899999999999999999999999999999999987 89999999999975
No 43
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=5.8e-17 Score=77.26 Aligned_cols=54 Identities=35% Similarity=0.442 Sum_probs=50.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||.++++++|+++|..+|.|..+.++.++.+++++|||||+|.+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 58 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFEL 58 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECC
Confidence 455899999999999999999999999999999999998899999999999976
No 44
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-17 Score=83.91 Aligned_cols=52 Identities=33% Similarity=0.586 Sum_probs=49.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 78 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 78 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCC
Confidence 4899999999999999999999999999999999998899999999999975
No 45
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=4.8e-17 Score=88.56 Aligned_cols=54 Identities=33% Similarity=0.384 Sum_probs=49.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~ 66 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 66 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCC
Confidence 345799999999999999999999999999999999999999999999999975
No 46
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=7.1e-17 Score=82.64 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=48.7
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEE--EEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVG--DIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.......+|||+|||+++++++|+++|..| .|. .+.++.++. |+++|||||+|.+
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~ 93 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFAS 93 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECC
Confidence 344556899999999999999999999999 677 889999876 9999999999986
No 47
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.71 E-value=7.1e-17 Score=82.68 Aligned_cols=57 Identities=39% Similarity=0.513 Sum_probs=52.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...+..++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~ 97 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 97 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECC
Confidence 344556899999999999999999999999999999999999899999999999976
No 48
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=79.00 Aligned_cols=55 Identities=24% Similarity=0.205 Sum_probs=51.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhc-cCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFER-CGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+....++|||+|||+++++++|+++|.. ||.|..+.++.++ +++++|||||+|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~ 60 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTD 60 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECC
Confidence 4456689999999999999999999999 9999999999998 99999999999976
No 49
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=1e-16 Score=76.11 Aligned_cols=51 Identities=25% Similarity=0.298 Sum_probs=48.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+|||+|||.++++++|+++|..+|.|..+.++.++.+++++|||||+|.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 52 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTS 52 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECC
Confidence 689999999999999999999999999999999998899999999999976
No 50
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=1.3e-16 Score=76.58 Aligned_cols=52 Identities=31% Similarity=0.606 Sum_probs=49.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++|||+|||.++++++|+++|..+|.|..+.++.++.+++++|||||+|.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 57 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSD 57 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECC
Confidence 4799999999999999999999999999999999998899999999999986
No 51
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=1.3e-17 Score=82.05 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=50.0
Q ss_pred CCcEEEEecCCC------CCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTY------RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+|||+ .+++++|+++|+.||.|..+.++.++.+++++|||||+|.+
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~ 63 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGS 63 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECC
Confidence 358999999999 99999999999999999999999999999999999999976
No 52
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-16 Score=77.57 Aligned_cols=55 Identities=20% Similarity=0.354 Sum_probs=50.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||..+++++|+++|..||.|..+.++.++ +++++|||||+|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~ 67 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYEN 67 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECC
Confidence 34456899999999999999999999999999999999987 99999999999976
No 53
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.70 E-value=1.6e-17 Score=80.30 Aligned_cols=51 Identities=31% Similarity=0.481 Sum_probs=46.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccC--CEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCG--EVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+|||+|||+++++++|+++|+.+| .|..+.++.++.+|+++|||||+|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~ 54 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGS 54 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-C
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999975
No 54
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=1.1e-16 Score=81.23 Aligned_cols=58 Identities=26% Similarity=0.330 Sum_probs=52.7
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+......++|||+|||+.+++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 73 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYET 73 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECC
Confidence 3445556899999999999999999999999999999999998899999999999976
No 55
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=78.98 Aligned_cols=58 Identities=17% Similarity=0.350 Sum_probs=49.6
Q ss_pred CCCCCCCCCcEEEEecCCCCC------CHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 5 RPPPRIEGMVSLKVDNLTYRT------TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 5 ~~~~~~~~~~~l~v~~l~~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++......++|||+|||+.+ ++++|+++|+.||.|..+.++ +.+|+++|||||+|.+
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~ 70 (105)
T 2nlw_A 7 RPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYAS 70 (105)
T ss_dssp CCCSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECS
T ss_pred CCCCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECC
Confidence 344444556899999999999 679999999999999999887 4689999999999986
No 56
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.6e-17 Score=81.47 Aligned_cols=52 Identities=33% Similarity=0.487 Sum_probs=49.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 76 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE 76 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCc
Confidence 3799999999999999999999999999999999999899999999999976
No 57
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.7e-17 Score=81.85 Aligned_cols=59 Identities=20% Similarity=0.423 Sum_probs=50.7
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 4 ~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+.+++......+|||+|||+++++++|+++|..+ .|..+.++.++. |+++|||||+|.+
T Consensus 7 ~~~~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~ 65 (109)
T 2dnn_A 7 GKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLS 65 (109)
T ss_dssp CCCCCCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECC
Confidence 3344444556899999999999999999999999 889999999874 9999999999975
No 58
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.7e-17 Score=80.34 Aligned_cols=58 Identities=33% Similarity=0.390 Sum_probs=52.7
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.......++|||+|||+.+++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 63 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFEL 63 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSS
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECC
Confidence 3345566899999999999999999999999999999999998899999999999975
No 59
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=2.1e-16 Score=81.08 Aligned_cols=56 Identities=34% Similarity=0.420 Sum_probs=51.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||..+++++|+++|..+|.|..+.++.++.+++++|||||+|.+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 114 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFEL 114 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESC
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECC
Confidence 34456899999999999999999999999999999999998899999999999976
No 60
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=82.03 Aligned_cols=56 Identities=32% Similarity=0.510 Sum_probs=51.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+....++|||+|||.++++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 93 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQS 93 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECC
Confidence 34455899999999999999999999999999999999998899999999999975
No 61
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.7e-17 Score=79.93 Aligned_cols=55 Identities=18% Similarity=0.185 Sum_probs=49.2
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
......++|||+|||+++++++|+++|..+|.+ .+.++.++ +++++|||||+|.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~ 64 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFAT 64 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECC
Confidence 344556899999999999999999999999954 89999997 99999999999986
No 62
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=1.5e-16 Score=77.52 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=49.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++|||+|||..+++++|+++|+.+|.|..+.++.++.+++++|||||+|.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 53 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRD 53 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECC
Confidence 4799999999999999999999999999999999998899999999999975
No 63
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=2.1e-16 Score=78.22 Aligned_cols=57 Identities=25% Similarity=0.300 Sum_probs=51.5
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+......++|||+|||+.+++++|+++|..||.|..+.++.++ +++++|||||+|.+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~ 79 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFER 79 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECC
Confidence 3445667899999999999999999999999999999999998 99999999999975
No 64
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.69 E-value=1.9e-16 Score=83.62 Aligned_cols=57 Identities=26% Similarity=0.302 Sum_probs=51.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
......++|||+|||+.+++++|+.+|..||.|..+.++.++.+|+++|||||+|.+
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 123 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYET 123 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECC
Confidence 344556789999999999999999999999999999999998899999999999976
No 65
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=79.27 Aligned_cols=57 Identities=30% Similarity=0.279 Sum_probs=51.7
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEE--------EEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVG--------DIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+....++|||+|||+.+++++|+++|..+|.|. .+.++.++.+++++|||||+|.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~ 74 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 74 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSS
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECC
Confidence 3455668999999999999999999999999998 68999998899999999999976
No 66
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.5e-17 Score=76.81 Aligned_cols=51 Identities=35% Similarity=0.652 Sum_probs=48.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
++|||+|||.++++++|+++|+.+|.|..+.++.++.+++++|||||+|.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 51 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 51 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcC
Confidence 479999999999999999999999999999999998899999999999976
No 67
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=80.43 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=49.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCE-EEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEV-GDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+++++++|+++|..+|.| ..+.++.++ +++++|||||+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~ 66 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKN 66 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSS
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECC
Confidence 34456899999999999999999999999999 788999998 99999999999975
No 68
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.68 E-value=6.4e-17 Score=75.68 Aligned_cols=50 Identities=34% Similarity=0.538 Sum_probs=47.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+|||+|||+++++++|+++|+.+|.|..+.++.++.+++++|||||+|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 50 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 50 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECC
Confidence 58999999999999999999999999999999998899999999999976
No 69
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.8e-16 Score=75.88 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=51.0
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 6 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+.......++|||+|||+++++++|+++|..+ .|..+.++.+ .+|+++|||||+|.+
T Consensus 3 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~ 59 (91)
T 2dgw_A 3 SGSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSN 59 (91)
T ss_dssp CCCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSS
T ss_pred CCCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECC
Confidence 34455667999999999999999999999999 8999999998 799999999999975
No 70
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=5.7e-16 Score=77.33 Aligned_cols=56 Identities=27% Similarity=0.259 Sum_probs=50.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...+..++|||+|||.++++++|+++|..||.|..+.++.++ +++++|||||+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~ 65 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQ 65 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECC
Confidence 344556899999999999999999999999999999999987 69999999999976
No 71
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=79.68 Aligned_cols=55 Identities=29% Similarity=0.486 Sum_probs=50.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+.+..++|||+|||.++++++|+++|+.||.|..+.++.+. +++++|||||+|.+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~ 57 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFEN 57 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECC
Confidence 34556899999999999999999999999999999999987 99999999999975
No 72
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=77.81 Aligned_cols=53 Identities=26% Similarity=0.336 Sum_probs=49.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEE-EEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDI-YIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+|||..+++++|+++|..+|.|..+ .++.++.++.++|||||+|.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~ 57 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS 57 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECC
Confidence 45899999999999999999999999999999 999998899999999999976
No 73
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=4.3e-16 Score=81.50 Aligned_cols=54 Identities=26% Similarity=0.536 Sum_probs=50.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||..+++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 90 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYS 90 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECC
Confidence 456899999999999999999999999999999999999999999999999976
No 74
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=5.5e-17 Score=79.73 Aligned_cols=55 Identities=16% Similarity=0.350 Sum_probs=47.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecC-CCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDR-FTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+++++++|+++|..+| |..+.++.++ .+|+++|||||+|.+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~ 70 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFED 70 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECC
Confidence 445568999999999999999999999999 9999999887 689999999999976
No 75
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4.5e-16 Score=76.58 Aligned_cols=54 Identities=26% Similarity=0.363 Sum_probs=49.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+.+++++|+++|..||.|..+.++.+ +++++|||||+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~ 64 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSS 64 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECC
Confidence 3455689999999999999999999999999999999887 89999999999975
No 76
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.67 E-value=2.6e-16 Score=86.96 Aligned_cols=53 Identities=30% Similarity=0.446 Sum_probs=49.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccC--CEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCG--EVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+||++++++++|+++|..|| .|..+.++.++.+++++|||||+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~ 121 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGS 121 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECC
Confidence 457899999999999999999999999 99999999999999999999999986
No 77
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=4.5e-17 Score=76.14 Aligned_cols=50 Identities=32% Similarity=0.512 Sum_probs=47.7
Q ss_pred EEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+|||+|||+++++++|+++|+.+|.|..+.++.++.++.++|||||+|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 50 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKE 50 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECC
Confidence 58999999999999999999999999999999998899999999999986
No 78
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.7e-16 Score=77.70 Aligned_cols=54 Identities=26% Similarity=0.381 Sum_probs=50.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+|||.++++++|+++|..||.|..+.++.++ ++.++|||||+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~ 75 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMES 75 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECC
Confidence 3456899999999999999999999999999999999998 99999999999975
No 79
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.67 E-value=3.9e-16 Score=81.64 Aligned_cols=54 Identities=78% Similarity=1.276 Sum_probs=50.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....+|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~ 121 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 121 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECC
Confidence 445899999999999999999999999999999999998899999999999976
No 80
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-17 Score=80.87 Aligned_cols=54 Identities=26% Similarity=0.460 Sum_probs=50.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 59 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 59 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSC
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECC
Confidence 345899999999999999999999999999999999998899999999999976
No 81
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.67 E-value=2.7e-16 Score=79.02 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=45.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...+|||+|||+++++++|+++|..||.|..+.++.+. +.++|||||+|.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~ 54 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFET 54 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECC
Confidence 34789999999999999999999999999999999875 4479999999976
No 82
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.5e-16 Score=77.18 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=49.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCC-EEEEEEe-ecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGE-VGDIYIP-RDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||+++++++|+++|..+|. |..+.++ .++.++.++|||||+|.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~ 61 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYES 61 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESS
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecC
Confidence 34589999999999999999999999998 9999888 788889999999999975
No 83
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=77.17 Aligned_cols=54 Identities=30% Similarity=0.482 Sum_probs=48.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCC---CCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRF---TRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~~fv~f~~ 64 (65)
...++|||+|||+++++++|+++|..||.|..+.++.++. ++.++|||||+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~ 59 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKK 59 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECC
Confidence 3458999999999999999999999999999999988765 66899999999975
No 84
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.5e-16 Score=77.92 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=44.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+++++++|+++|++||.|.++.++.+ ||||||+|++
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~ 61 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNT 61 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECC
Confidence 3455689999999999999999999999999999988764 6999999975
No 85
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.4e-17 Score=81.85 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=48.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+|||+++++++|+++|..||.|..+.++.+..+++++|||||+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~ 76 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRN 76 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECC
Confidence 3455899999999999999999999999998775566666799999999999986
No 86
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.66 E-value=8.3e-16 Score=74.19 Aligned_cols=54 Identities=26% Similarity=0.302 Sum_probs=48.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+++++++|+++|..+|.|..+.++. .+++++|||||+|.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~--~~g~~~g~afV~f~~ 57 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM--ENGKSKGCGVVKFES 57 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE--SSSCEEEEEEEEESS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--cCCCcceEEEEEECC
Confidence 445568999999999999999999999999999998887 488999999999975
No 87
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.66 E-value=7e-16 Score=78.12 Aligned_cols=55 Identities=25% Similarity=0.342 Sum_probs=50.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||..+++++|+++|..||.|..+.++.++ +++++|||||+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~ 85 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFER 85 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECC
Confidence 34555899999999999999999999999999999999988 99999999999976
No 88
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=3.6e-16 Score=75.60 Aligned_cols=49 Identities=33% Similarity=0.478 Sum_probs=43.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....+|||+|||+++++++|+++|+.||.|.++.++.+ ++|||||+|.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~ 57 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFAD 57 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECC
Confidence 44589999999999999999999999999999988763 78999999976
No 89
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=3.2e-16 Score=79.31 Aligned_cols=52 Identities=31% Similarity=0.611 Sum_probs=49.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 87 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAE 87 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECC
Confidence 4799999999999999999999999999999999998899999999999975
No 90
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=6.6e-17 Score=77.90 Aligned_cols=51 Identities=29% Similarity=0.563 Sum_probs=48.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
++|||+|||.++++++|+++|+.+|.|..+.++.++.+++++|||||+|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 52 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQE 52 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECT
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECC
Confidence 689999999999999999999999999999999998899999999999986
No 91
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=3.1e-16 Score=81.98 Aligned_cols=53 Identities=34% Similarity=0.540 Sum_probs=50.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+|||+++++++|+++|+.+|.|..+.++.++.+|+++|||||+|.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 54 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEK 54 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEcc
Confidence 45899999999999999999999999999999999998899999999999976
No 92
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.66 E-value=1.6e-16 Score=82.20 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=49.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCC---EEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGE---VGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+....++|||+|||+++++++|+++|..+|. |..+.++.++. |+++|||||+|.+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~ 97 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGS 97 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECC
Confidence 3455689999999999999999999999998 78899999976 9999999999976
No 93
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=79.76 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=48.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCC---CCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFT---RESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~~fv~f~~ 64 (65)
....++|||+|||+++++++|+++|..||.|. +.++.+..+ |+++|||||+|.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~ 61 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQE 61 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECC
Confidence 34568999999999999999999999999998 778877766 7999999999975
No 94
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=79.24 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=50.2
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCC---EEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGE---VGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+....++|||+|||+++++++|+++|..+|. |..+.++.++. |+++|||||+|.+
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~ 64 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMES 64 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSS
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECC
Confidence 34556689999999999999999999999887 88899999876 9999999999975
No 95
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-15 Score=74.36 Aligned_cols=55 Identities=29% Similarity=0.428 Sum_probs=48.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
......++|||+|||+.+++++|+++|..||.|..+.++.++. .++|||||+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~ 64 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFEN 64 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECC
Confidence 3455568999999999999999999999999999999988753 389999999975
No 96
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=2.2e-16 Score=79.69 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=49.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCC---EEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGE---VGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+++++++|+++|..+|. |..+.++.++. |+++|||||+|.+
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~ 70 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELES 70 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECC
Confidence 3455689999999999999999999999998 88999999875 9999999999975
No 97
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=77.75 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=50.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+..++|||+|||+++++++|+++|..+|.|..+.++.++.+++++|||||+|.+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~ 66 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFES 66 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECC
Confidence 34455899999999999999999999999999877778888899999999999975
No 98
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-15 Score=74.44 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=48.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
......++|||+|||+.+++++|+++|..||.|..+.++.++.+ ++|||||+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~ 64 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYE 64 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESS
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECC
Confidence 34556689999999999999999999999999999999887533 68999999975
No 99
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.9e-16 Score=80.18 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=48.9
Q ss_pred cEEEEecC----CCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNL----TYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l----~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+|||+|| |+.+++.+|+.+|+.||+|..+.++.|+.||.++|||||+|.+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 68999999 9999999999999999999999999999999999999999973
No 100
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=5e-16 Score=73.68 Aligned_cols=49 Identities=16% Similarity=0.421 Sum_probs=44.6
Q ss_pred cEEEEecCCCCC------CHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRT------TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
++|||+|||..+ ++++|+++|+.||.|..+.++ +.+|+++|||||+|.+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~ 56 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYAS 56 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECC
Confidence 689999999999 679999999999999999876 4689999999999975
No 101
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=5.7e-16 Score=74.14 Aligned_cols=53 Identities=25% Similarity=0.466 Sum_probs=48.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCC-cccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRE-SRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~g~~fv~f~~ 64 (65)
..++|||+|||.++++++|+++|..+|.|..+.++.++.++. ++|||||+|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~ 56 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFEN 56 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEec
Confidence 458999999999999999999999999999999998877666 89999999976
No 102
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=77.70 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=44.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+..++|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|++
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~ 76 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNT 76 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECC
Confidence 4445689999999999999999999999999999988764 7999999976
No 103
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.63 E-value=2.1e-16 Score=76.69 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=48.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||+++++++|+++|..+|.|..+.++.++.+++++|||||+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~ 66 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFES 66 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECC
Confidence 345899999999999999999999999999888888888899999999999975
No 104
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=2.7e-16 Score=81.59 Aligned_cols=54 Identities=17% Similarity=0.133 Sum_probs=46.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+++++++|+++|..+| +..+.++.++. ++++|||||+|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~ 95 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFAT 95 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCC
Confidence 344568999999999999999999999999 66999999875 9999999999975
No 105
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=2e-15 Score=79.24 Aligned_cols=53 Identities=30% Similarity=0.497 Sum_probs=49.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCC--CcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTR--ESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~g~~fv~f~~ 64 (65)
..++|||+|||+++++++|+++|..+|.|..+.++.++.++ +++|||||+|.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~ 56 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYT 56 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECC
Confidence 45899999999999999999999999999999999998776 899999999975
No 106
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.1e-15 Score=73.54 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=43.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+..++|||+|||+.+++++|+++|.+||.|..+.++.+ +|||||+|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~ 60 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELAT 60 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECC
Confidence 344589999999999999999999999999999977653 7999999975
No 107
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.5e-15 Score=72.77 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=46.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHH----HHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLR----RVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+|||+++++++|+ ++|..||.|..+.++.++.+ +|||||+|.+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~ 61 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMEN 61 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECC
Confidence 3455899999999999999999 99999999999999988755 8999999975
No 108
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=6.3e-16 Score=78.79 Aligned_cols=53 Identities=19% Similarity=0.267 Sum_probs=47.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCE----EEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEV----GDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....+|||+|||+++++++|+++|..||.| ..+.++.+ .+|+++|||||+|.+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~ 77 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFAC 77 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECC
Confidence 455899999999999999999999999875 57888888 489999999999975
No 109
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.62 E-value=5.4e-15 Score=73.09 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=43.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....+++|||+|||+.+++++|+++|++||.|.++.++. .||+|||+|++
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~ 66 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFED 66 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECC
Confidence 344568999999999999999999999999999998764 46999999975
No 110
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.5e-15 Score=74.85 Aligned_cols=55 Identities=31% Similarity=0.479 Sum_probs=48.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
......++|||+|||.++++++|+++|+.||.|..+.++.++ +.++|||||+|.+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~ 78 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFEN 78 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCC
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECC
Confidence 344556899999999999999999999999999999998874 3489999999986
No 111
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=6.2e-15 Score=73.18 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=43.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+.+++++|+++|.+||.|..+.++.+ ||||||+|++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~ 60 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFEN 60 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECC
Confidence 3455689999999999999999999999999999887652 7999999975
No 112
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=4.3e-15 Score=77.33 Aligned_cols=52 Identities=29% Similarity=0.497 Sum_probs=49.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++|||+|||.++++++|+++|+.+|.|..+.++.++.+|+++|||||+|.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~ 53 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 53 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECC
Confidence 4799999999999999999999999999999999998899999999999975
No 113
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1e-14 Score=72.37 Aligned_cols=53 Identities=26% Similarity=0.335 Sum_probs=46.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||.++++++|+++|..||.|..+.+.. ++.++|||||+|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~ 70 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFED 70 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECC
Confidence 445568999999999999999999999999999988754 45689999999976
No 114
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.60 E-value=3.8e-15 Score=77.80 Aligned_cols=53 Identities=30% Similarity=0.345 Sum_probs=49.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+|||.++++++|+++|+.+|.|..+.++.++.++.++|||||+|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 54 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTS 54 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECC
Confidence 34899999999999999999999999999999999998899999999999975
No 115
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.3e-14 Score=72.06 Aligned_cols=51 Identities=24% Similarity=0.306 Sum_probs=45.1
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
++.....++|||+|||+++++++|+++|..||.|..+.++.+ |||||+|.+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~ 59 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVR 59 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECC
Confidence 334556789999999999999999999999999999988765 899999975
No 116
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.59 E-value=5.5e-15 Score=79.08 Aligned_cols=53 Identities=26% Similarity=0.342 Sum_probs=49.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||+.+++++|+++|..||.|..+.++.++ ++.++|||||+|.+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~ 138 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFER 138 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCC
Confidence 445899999999999999999999999999999999987 99999999999975
No 117
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2e-14 Score=74.72 Aligned_cols=57 Identities=23% Similarity=0.270 Sum_probs=52.2
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
......++|||+|||..+++++|+++|+.+|.|..+.++.++.++.++|+|||+|.+
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 138 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTS 138 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESC
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCC
Confidence 344556899999999999999999999999999999999998899999999999976
No 118
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=9.5e-15 Score=74.75 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=45.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHH----HHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLR----RVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
......++|||+|||+.+++++|+ ++|+.||.|.++.+. .+++++|||||+|.+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~ 81 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFAT 81 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECC
Confidence 344556899999999999998865 689999999888664 378899999999975
No 119
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=5e-15 Score=73.88 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=48.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH---HHhhccCCEEEEEEeecCCCC---CcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLR---RVFERCGEVGDIYIPRDRFTR---ESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~---~~f~~~g~i~~~~~~~~~~~~---~~~g~~fv~f~~ 64 (65)
+.....+|||+|||+++++++|+ ++|..||.|..+.++.++.++ .++|||||+|.+
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~ 72 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIR 72 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESS
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECc
Confidence 44556899999999999999999 999999999999998887643 566999999975
No 120
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.2e-15 Score=72.32 Aligned_cols=48 Identities=38% Similarity=0.586 Sum_probs=43.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+|||+++++++|+++|..||.|..+.++.+ ++|||||+|.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~ 51 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFAD 51 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECC
Confidence 4589999999999999999999999999999987653 78999999975
No 121
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.59 E-value=1.3e-14 Score=76.13 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=51.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+|||..+++++|+++|..+|.|..+.++.++.++.++|||||+|.+
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 3446899999999999999999999999999999999998899999999999986
No 122
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2e-14 Score=68.38 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=46.3
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 6 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+......++|||+|||..+++++|+++|..||.|..+.++. ++|||||+|.+
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~ 57 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFAT 57 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESS
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECC
Confidence 344556678999999999999999999999999999998876 37999999976
No 123
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.58 E-value=1e-14 Score=77.78 Aligned_cols=53 Identities=32% Similarity=0.407 Sum_probs=50.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~ 155 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 155 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECC
Confidence 44899999999999999999999999999999999998899999999999976
No 124
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=9.2e-15 Score=86.85 Aligned_cols=54 Identities=30% Similarity=0.487 Sum_probs=50.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....+|||+|||+.+++++|..+|..||.|..+.++.++.+++++|||||+|.+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~ 153 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEH 153 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeecc
Confidence 344799999999999999999999999999999999998899999999999986
No 125
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=3.5e-16 Score=76.74 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=46.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||+++++++|+++|..+|.|.. .++.++.+++++|||||+|.+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~ 67 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFES 67 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECC
Confidence 35689999999999999999999999998776 566666789999999999975
No 126
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=8.9e-15 Score=72.48 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=44.0
Q ss_pred CCCCCcEEEEecCCC-CCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTY-RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+..++|||+|||+ .+++++|+++|.+||.|..+.++.+ +|||||+|++
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~ 61 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMAT 61 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESS
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECC
Confidence 344568999999999 9999999999999999999988764 4899999975
No 127
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=1.1e-14 Score=78.59 Aligned_cols=52 Identities=29% Similarity=0.504 Sum_probs=47.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++|||+|||.++++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 79 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEV 79 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCC
Confidence 4799999999999999999999999999999999998899999999999975
No 128
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.3e-16 Score=76.83 Aligned_cols=56 Identities=30% Similarity=0.242 Sum_probs=44.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||..+++++|+++|..||.|..+.+..+..+++++|||||+|.+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~ 76 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPN 76 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECC
Confidence 33456899999999999999999999999988433222222388899999999976
No 129
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=71.03 Aligned_cols=53 Identities=26% Similarity=0.505 Sum_probs=45.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
......++|||+|||+++++++|+++|..+|.| .++.+ .+++++|||||+|.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~ 62 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFAS 62 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECC
Confidence 344566999999999999999999999999977 45555 689999999999975
No 130
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1.8e-16 Score=79.58 Aligned_cols=55 Identities=22% Similarity=0.170 Sum_probs=50.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEE--------EEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD--------IYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+|||..+++++|+++|..||.|.. +.++.++.+++++|||||+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~ 66 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 66 (116)
Confidence 345689999999999999999999999999988 8888888899999999999986
No 131
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.56 E-value=3.1e-14 Score=71.14 Aligned_cols=51 Identities=27% Similarity=0.430 Sum_probs=45.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+..++|||+|||+.+++++|+++|..||.|..+.++.+ +.++|||||+|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~ 56 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYED 56 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECC
Confidence 44589999999999999999999999999999988764 4568999999975
No 132
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=70.85 Aligned_cols=55 Identities=31% Similarity=0.361 Sum_probs=47.0
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.......++|||+|||+++++++|+++|..++ .+.++.++.+++++|||||+|.+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~ 63 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNS 63 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSS
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECC
Confidence 34556668999999999999999999999774 56677788899999999999975
No 133
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.55 E-value=3.7e-14 Score=73.98 Aligned_cols=56 Identities=34% Similarity=0.427 Sum_probs=51.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||..+++++|+++|+.+|.|..+.++.++.++.++|+|||+|.+
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 140 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNK 140 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECC
Confidence 44556899999999999999999999999999999999998899999999999976
No 134
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.55 E-value=2.7e-14 Score=74.31 Aligned_cols=56 Identities=27% Similarity=0.318 Sum_probs=51.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
......+|||+|||..+++++|+++|+.+|.|..+.++.++.+|.++|||||+|.+
T Consensus 84 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 139 (167)
T 1fxl_A 84 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 139 (167)
T ss_dssp GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCC
Confidence 33455899999999999999999999999999999999998899999999999976
No 135
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.55 E-value=5.9e-14 Score=74.92 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=50.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||..+++++|+++|..+|.|..+.++.++.++.++|||||+|.+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~ 165 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 165 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECC
Confidence 455899999999999999999999999999999999998899999999999986
No 136
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.55 E-value=3e-14 Score=77.04 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=47.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++|||+|||+.+++++|+++|+.||.|..++++.+. ++.++|||||+|.+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~ 159 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDS 159 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESS
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECC
Confidence 4799999999999999999999999999999999886 68999999999986
No 137
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=72.48 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=43.2
Q ss_pred CCCCcEEEEecCCCC-CCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYR-TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+|||++ +++++|+++|.+||.|.++.++. .+|||||+|++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~ 71 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMET 71 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECC
Confidence 344689999999998 99999999999999999998863 47999999975
No 138
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.54 E-value=2.5e-14 Score=69.27 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=42.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+..|||+||++.+++++|+++|.++|.|..+++.. ++|||||+|.+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~ 52 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTT 52 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESS
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECC
Confidence 357899999999999999999999999999998855 68999999976
No 139
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=7.5e-14 Score=67.17 Aligned_cols=47 Identities=32% Similarity=0.517 Sum_probs=42.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+|||.++++++|+++|..||.|..+.++ +|||||+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~ 51 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIED 51 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECC
Confidence 4456899999999999999999999999999999876 6899999975
No 140
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=6.7e-15 Score=71.56 Aligned_cols=53 Identities=28% Similarity=0.479 Sum_probs=45.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH----HHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLR----RVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+....++|||+|||.++++++|+ ++|..||.|..+.+.. +++++|||||+|.+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~ 60 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKE 60 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCC
Confidence 34556899999999999999999 9999999999987763 67788999999975
No 141
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.6e-14 Score=74.32 Aligned_cols=50 Identities=30% Similarity=0.389 Sum_probs=45.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
++|||+|||.++++++|+++|+.+|.|..+.++.++ +++++|||||+|.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~ 50 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQ 50 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESS
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCC
Confidence 589999999999999999999999999999998886 57899999999975
No 142
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.53 E-value=5.9e-14 Score=75.75 Aligned_cols=53 Identities=23% Similarity=0.446 Sum_probs=50.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+|||..+++++|+++|..||.|..+.++.++.+++++|||||+|.+
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 44799999999999999999999999999999999998899999999999976
No 143
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=5.4e-14 Score=68.68 Aligned_cols=50 Identities=32% Similarity=0.668 Sum_probs=44.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||..+++++|+++|..||.|..+.+.. .+|||||+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~------~kg~afV~f~~ 60 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK------DKGFGFIRLET 60 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET------TTTEEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCEEEEEECC
Confidence 445568999999999999999999999999999998764 37999999986
No 144
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.53 E-value=4.7e-14 Score=73.32 Aligned_cols=51 Identities=25% Similarity=0.398 Sum_probs=45.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+.+++++|+++|..||.|..+.++.+ ++|||||+|.+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~ 119 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFED 119 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECC
Confidence 3455689999999999999999999999999999988775 58999999975
No 145
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=8.6e-14 Score=67.76 Aligned_cols=50 Identities=24% Similarity=0.328 Sum_probs=43.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||.++++++|+++|..||.|..+.+..+ +|||||+|.+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~ 62 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYES 62 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECC
Confidence 3445589999999999999999999999999999987643 7899999975
No 146
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.52 E-value=2e-14 Score=75.03 Aligned_cols=52 Identities=25% Similarity=0.359 Sum_probs=49.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+|||+|||..+++++|+++|+.+|.|..+.++.++.++.++|||||+|.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 138 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDS 138 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESS
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECC
Confidence 4689999999999999999999999999999999998899999999999975
No 147
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=5.6e-14 Score=68.79 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=42.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||.++++++|+++|..||.|..+.+. +++|||||+|.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~ 72 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDT 72 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSS
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECC
Confidence 345899999999999999999999999999998876 367999999975
No 148
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-13 Score=66.43 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=43.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+|||+++++++|+++|..||.|..+ +.++.+++ ||||+|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~ 54 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGD 54 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESS
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECC
Confidence 3455899999999999999999999999999886 56666665 99999975
No 149
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.52 E-value=3.1e-14 Score=71.41 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=43.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccC-CEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCG-EVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+....+|||+|||+++++++|+++|..+| .|..+.+.. .+++|||||+|.+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~ 76 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPS 76 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECC
Confidence 34568999999999999999999999999 898887643 3578999999975
No 150
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-13 Score=66.79 Aligned_cols=52 Identities=27% Similarity=0.349 Sum_probs=45.1
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 5 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++......++|||+|||+.+++++|+++|..||.|..+.++ ++||||+|.+
T Consensus 2 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~ 53 (92)
T 2dgt_A 2 SSGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMER 53 (92)
T ss_dssp CCSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECC
Confidence 345566677999999999999999999999999999998875 3599999976
No 151
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.51 E-value=2.8e-14 Score=71.61 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=41.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
......+|||+|||+++++++|+++|..||.|..+.++.+ |||||+|.+
T Consensus 12 ~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~ 60 (115)
T 3beg_B 12 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVR 60 (115)
T ss_dssp -----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECC
Confidence 3355689999999999999999999999999999988664 999999976
No 152
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=9.9e-14 Score=68.81 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=44.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+|||..+++++|+++|..||.|..+.++.+ +|||||+|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~ 70 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFST 70 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECC
Confidence 345689999999999999999999999999999988765 7999999975
No 153
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.51 E-value=1.3e-13 Score=72.29 Aligned_cols=52 Identities=27% Similarity=0.383 Sum_probs=48.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+|||..+++++|+++|+.||.|..+.++.++ +|+++|||||+|.+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~ 145 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTT 145 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESS
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECC
Confidence 45899999999999999999999999999999998885 69999999999976
No 154
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=8e-14 Score=67.90 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=42.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+..++|||+|||+++++++|+++|..||.|. +.++. +.++|||||+|.+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~ 65 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPD 65 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSS
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECC
Confidence 334468999999999999999999999999985 55544 4678999999975
No 155
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.5e-14 Score=70.91 Aligned_cols=48 Identities=23% Similarity=0.390 Sum_probs=42.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||+.+++++|+++|..||.|..+.++. .+|||||+|.+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~ 55 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLE 55 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCC
Confidence 3457999999999999999999999999999987753 57899999975
No 156
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.50 E-value=6.7e-14 Score=69.63 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=42.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+++++++|+++|..||.|..+.++ +|||||+|.+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~ 74 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEE 74 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECC
Confidence 44556899999999999999999999999999998876 6999999975
No 157
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=4.6e-14 Score=69.11 Aligned_cols=46 Identities=30% Similarity=0.517 Sum_probs=42.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
++|||+|||.++++++|+++|+.||.|..+.++.+ ++|||||+|.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~ 46 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFED 46 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECC
Confidence 47999999999999999999999999999988775 78999999975
No 158
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.50 E-value=1.4e-13 Score=67.64 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=43.3
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 7 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+......++|||+|||+++++++|+++|..||.|..+.++ +|||||+|.+
T Consensus 5 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~ 54 (103)
T 2dgu_A 5 SSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDE 54 (103)
T ss_dssp CCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCC
Confidence 3344556899999999999999999999999999998875 4699999975
No 159
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=2.3e-14 Score=69.57 Aligned_cols=51 Identities=25% Similarity=0.471 Sum_probs=43.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+.+++++|+++|..+|.|..+ ..+++++|||||+|.+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~ 62 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKS 62 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECC
Confidence 34456899999999999999999999999877554 3578899999999975
No 160
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.49 E-value=2.3e-13 Score=66.50 Aligned_cols=48 Identities=25% Similarity=0.386 Sum_probs=42.1
Q ss_pred CCCCCcEEEEecCCC-CCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTY-RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+ ++++++|+++|..||.|..+.+ .+|||||+|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~ 66 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDN 66 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESS
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECC
Confidence 445568999999998 9999999999999999999887 27999999975
No 161
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.48 E-value=2.1e-13 Score=72.36 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=44.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
......+|||+||++.+++++|+++|++||.|.++.+... ..+|||||+|.+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d 93 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYAD 93 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESC
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECC
Confidence 3445578999999999999999999999999999987543 257899999975
No 162
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2.4e-13 Score=65.35 Aligned_cols=48 Identities=27% Similarity=0.393 Sum_probs=42.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+....++|||+|||+.+++++|+++|..||.|..+.++ ++||||+|.+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~ 52 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEK 52 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECC
Confidence 44556899999999999999999999999999999875 3599999976
No 163
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.47 E-value=2.4e-13 Score=67.50 Aligned_cols=45 Identities=22% Similarity=0.396 Sum_probs=41.1
Q ss_pred CCcEEEEecCCCC-CCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYR-TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+|||+. +++++|+++|..||.|..+.+ ++|||||+|.+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~ 71 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSN 71 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECC
Confidence 3489999999999 999999999999999999877 57999999976
No 164
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=2.3e-13 Score=66.21 Aligned_cols=48 Identities=27% Similarity=0.437 Sum_probs=41.2
Q ss_pred CCCCCcEEEEecCCC-CCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTY-RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+..++|||+|||+ .+++++|+++|..||.|..+.+. +|||||+|.+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~ 54 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDN 54 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECC
Confidence 344568999999998 99999999999999999998773 6999999976
No 165
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.46 E-value=3.7e-13 Score=75.37 Aligned_cols=53 Identities=26% Similarity=0.459 Sum_probs=46.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH----HHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLR----RVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+....++|||+|||+++++++|+ ++|..||.|..+.+.. +++++|||||+|.+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~ 61 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKE 61 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECC
Confidence 44556899999999999999966 8999999999987765 78899999999976
No 166
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.46 E-value=1.1e-14 Score=75.16 Aligned_cols=55 Identities=25% Similarity=0.228 Sum_probs=43.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEE--E---eecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIY--I---PRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~--~---~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+|||+.+++++|+++|..||.|..+. + +....+++++|||||+|.+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~ 101 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPN 101 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCC
Confidence 44558999999999999999999999999876531 1 1112478999999999975
No 167
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.45 E-value=6e-13 Score=74.56 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=49.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+|||+.+++++|+++|..+|.|..+.++.++.+|.++|||||+|.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 146 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMK 146 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECC
Confidence 34799999999999999999999999999999999998899999999999975
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.45 E-value=4e-13 Score=64.00 Aligned_cols=48 Identities=25% Similarity=0.400 Sum_probs=42.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcc----C-------CEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERC----G-------EVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||+++++++|+++|..+ | .|..+.+..+ +|||||+|.+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~ 62 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRS 62 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCC
Confidence 345899999999999999999999999 8 8988877643 7999999975
No 169
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.45 E-value=3.2e-13 Score=74.12 Aligned_cols=51 Identities=29% Similarity=0.328 Sum_probs=45.4
Q ss_pred CCCCCcEEEEecCCC-CCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTY-RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+ .+++++|+++|+.||.|..+.++.++ +|||||+|.+
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~ 81 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMAD 81 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECC
Confidence 445568999999999 99999999999999999999988764 7899999976
No 170
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=68.72 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=41.4
Q ss_pred CCCcEEEE--ecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKV--DNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v--~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+..++||| +||++.+++++|++.|++||.|..+.++. .+|||||+|.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~ 72 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRT 72 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESS
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECC
Confidence 34578999 77999999999999999999998887643 37999999975
No 171
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4e-13 Score=65.14 Aligned_cols=52 Identities=15% Similarity=0.115 Sum_probs=44.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEE-EEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDI-YIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+++++++|+++|..||.|..+ .++.++.++. |||+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~ 63 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSS 63 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESS
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECC
Confidence 33456899999999999999999999999999999 4777765543 9999975
No 172
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.1e-12 Score=62.95 Aligned_cols=47 Identities=26% Similarity=0.376 Sum_probs=40.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcc--CCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERC--GEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+|||+.+++++|+++|..| |.|..+.+. +|||||+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~ 60 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSN 60 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESS
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCC
Confidence 3445899999999999999999999999 889887653 6899999976
No 173
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.43 E-value=7.2e-13 Score=73.93 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=48.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+|||+|||..+++++|+++|..||.|..+.++.+ .+|+++|||||+|.+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~ 146 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAA 146 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESS
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCC
Confidence 479999999999999999999999999999999988 599999999999975
No 174
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.40 E-value=1.1e-12 Score=71.38 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=45.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+|||+|||+.+++++|+++|..||.|..+.++.+. +.++|||||+|.+
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~ 152 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFET 152 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESS
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCC
Confidence 4689999999999999999999999999999998874 4479999999976
No 175
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.3e-13 Score=65.70 Aligned_cols=48 Identities=31% Similarity=0.412 Sum_probs=40.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCC-EEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGE-VGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+|||.++++++|+++|..||. +..+.+ .++|||||+|.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-------~~~g~afV~f~~ 53 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-------LKSGYAFVDYPD 53 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-------EETTEEEECCSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-------cCCCEEEEEECC
Confidence 345689999999999999999999999998 554444 247999999975
No 176
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.40 E-value=1.1e-12 Score=73.79 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=44.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
......++|||+|||+++++++|+++|..+|.|..+.++.++.+ ++|||||+|.+
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~ 90 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFAR 90 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECC
Confidence 34455689999999999999999999999999999999887633 47999999976
No 177
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.40 E-value=1.3e-12 Score=71.13 Aligned_cols=48 Identities=23% Similarity=0.220 Sum_probs=43.2
Q ss_pred CCcEEEEecCC-CCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLT-YRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+||| +.+++++|+++|..||.|.++.++.+ .+|||||+|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~ 51 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMAD 51 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECC
Confidence 45899999999 89999999999999999999988764 37999999976
No 178
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.38 E-value=5.6e-13 Score=63.93 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=41.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+|||+++++++|+++|..+ .|..+.+. +++|||||+|.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~ 49 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLN 49 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECC
Confidence 45899999999999999999999999 88888773 578999999975
No 179
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.38 E-value=1.7e-12 Score=72.96 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=47.7
Q ss_pred CCCcEEEEecCCCC-CCHHHHHHHhhccCCEEEEEEeecCC-CCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYR-TTPDDLRRVFERCGEVGDIYIPRDRF-TRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~~~g~~fv~f~~ 64 (65)
...++|||+|||.. +++++|+++|..||.|..+.++.+.. |+.++|||||+|.+
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~ 263 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFEN 263 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESS
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCC
Confidence 34589999999999 99999999999999999999988865 59999999999976
No 180
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.38 E-value=3e-12 Score=65.78 Aligned_cols=50 Identities=26% Similarity=0.364 Sum_probs=42.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccE-EEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGF-AFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-~fv~f~~ 64 (65)
+.....|||+||++.+++++|+++|+.||.|.++.+... .+|+ |||+|++
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~ 75 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYAD 75 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESC
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECC
Confidence 344468999999999999999999999999999987653 3677 9999975
No 181
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=5.3e-12 Score=61.37 Aligned_cols=48 Identities=27% Similarity=0.251 Sum_probs=41.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|+ ++++++|+++|..||.|..+.+. +++|||||+|.+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~ 58 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEK 58 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECC
Confidence 3445689999995 89999999999999999998873 568999999975
No 182
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.36 E-value=3.3e-12 Score=67.11 Aligned_cols=50 Identities=26% Similarity=0.462 Sum_probs=43.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+|||..+++++|+++|+.+|.|..+ ..++.++|||||+|.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~ 145 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKS 145 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSS
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECC
Confidence 3455899999999999999999999999988654 4688999999999975
No 183
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.35 E-value=1.4e-12 Score=70.92 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=43.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCE--EEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEV--GDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++|||+|||+.+++++|+++|+.+|.| ..+.+..+. +..+|+|||+|.+
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~ 174 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDS 174 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCC
Confidence 4689999999999999999999999998 788877664 5567999999976
No 184
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.34 E-value=1.2e-11 Score=63.06 Aligned_cols=45 Identities=33% Similarity=0.406 Sum_probs=39.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccE-EEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGF-AFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-~fv~f~~ 64 (65)
..|||+||++.+++++|+++|+.||.|.++.+.. + .|| |||+|++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~ 71 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFES 71 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECC
Confidence 4678999999999999999999999999998754 2 286 9999975
No 185
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.34 E-value=1.3e-13 Score=72.57 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=45.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++|||+|||+++++++|+++|..+|.+.. ..+.+..+++++|||||+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~ 63 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFES 63 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECC
Confidence 4556699999999999999999999999886544 234444688899999999976
No 186
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.32 E-value=4.8e-12 Score=70.57 Aligned_cols=48 Identities=42% Similarity=0.711 Sum_probs=42.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||+++++++|+++|..||.|..+.+.. ++|||||+|.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~ 67 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLES 67 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECC
Confidence 4457999999999999999999999999999988753 47999999975
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.31 E-value=6.9e-12 Score=70.26 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=48.6
Q ss_pred CCCCcEEEEecCCCCC-CHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRT-TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+|||..+ ++++|+++|+.||.|..+.++.++ +|.++|+|||+|.+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~ 235 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYET 235 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSS
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCC
Confidence 3456899999999995 999999999999999999988886 89999999999976
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.31 E-value=1.7e-11 Score=68.65 Aligned_cols=49 Identities=20% Similarity=0.161 Sum_probs=43.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
...++|||+|||..+++++|+++|..||.|.++.++.++ +|||||+|.+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~ 253 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDN 253 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCC
Confidence 345889999999999999999999999999999887543 5899999976
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.29 E-value=3.5e-12 Score=68.27 Aligned_cols=47 Identities=30% Similarity=0.345 Sum_probs=42.8
Q ss_pred CcEEEEecCCC-CCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTY-RTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++|||+|||. .+++++|+++|..+|.|..+.++.++ +|||||+|.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~ 50 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMAD 50 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTT
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECC
Confidence 47999999999 99999999999999999999887754 7899999976
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.28 E-value=7.3e-12 Score=69.82 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=43.2
Q ss_pred CCCCcEEEEecCCCCC---------CHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRT---------TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+||+..+ ++++|++.|+.||.|..+.++. ++|||||.|.+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~ 188 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKY 188 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCC
Confidence 3456899999999998 6999999999999999998875 47999999975
No 191
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.24 E-value=2e-11 Score=61.75 Aligned_cols=47 Identities=28% Similarity=0.260 Sum_probs=40.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
....++|||+|+ ++++++|+++|..||.|..+.+. .++|||||+|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~ 82 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEK 82 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECC
Confidence 345689999995 69999999999999999988774 468999999975
No 192
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.23 E-value=2e-11 Score=70.95 Aligned_cols=48 Identities=29% Similarity=0.493 Sum_probs=40.9
Q ss_pred CCCcEEEEec--CCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDN--LTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~--l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
+.+.+|||+| |++.+++++|++.|++||.|.++.+.. +||||||+|++
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~ 65 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRT 65 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESS
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECC
Confidence 4458999998 588999999999999999998876532 57999999975
No 193
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.22 E-value=4.6e-11 Score=63.64 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=39.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcc----C-------CEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERC----G-------EVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+|||+++++++|+++|..+ | .|..+.+ +.++|||||+|.+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~ 60 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRS 60 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESC
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCC
Confidence 45899999999999999999999999 5 5555543 4568999999986
No 194
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.20 E-value=1.6e-10 Score=57.26 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=43.9
Q ss_pred CCcEEEEecCCC-----CCCHHHHHHHhhccCCEEEEEEeecCCC-CCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTY-----RTTPDDLRRVFERCGEVGDIYIPRDRFT-RESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~-----~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~~fv~f~~ 64 (65)
.+++|++.|+.. +-.+++|++.|++||.|.++.++.++.+ +.++|++||+|.+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~ 65 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFER 65 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESS
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECC
Confidence 357999999963 2367899999999999999999888654 6889999999975
No 195
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.20 E-value=7e-11 Score=61.74 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=39.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcc----C-------CEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERC----G-------EVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|||+|||.++++++|+++|+.+ | .+..+.+. .++|||||+|.+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~ 60 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRS 60 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESS
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCC
Confidence 46899999999999999999999999 6 66666543 457999999975
No 196
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=8.7e-10 Score=54.28 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=39.0
Q ss_pred CCCCcEEEEecCC-------CCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLT-------YRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~-------~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....++-|.-.. ..+++++|+++|.+||.|..+.++ ++++|||||+|.+
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~ 63 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFAT 63 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESC
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECC
Confidence 3344566665332 457899999999999999999876 4688999999975
No 197
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=2.6e-10 Score=55.75 Aligned_cols=42 Identities=33% Similarity=0.423 Sum_probs=35.1
Q ss_pred CcE-EEEecCCCCCCHHH----HHHHhhcc-CCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVS-LKVDNLTYRTTPDD----LRRVFERC-GEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~-l~v~~l~~~~~~~~----l~~~f~~~-g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+ |||+|||+.+++++ |+++|.+| |.|.++ ++ |+|||.|.+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~ 55 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFIN 55 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECC
Confidence 345 99999999999877 66899999 499876 33 999999975
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.10 E-value=2.1e-10 Score=61.32 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=42.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccC-CEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCG-EVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+|||+|||..+++++|+++|..+| .|..+.++.+ .+|+|||+|.+
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~ 167 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGS 167 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSS
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCC
Confidence 58899999999999999999999999 9999887553 37999999976
No 199
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.10 E-value=4.6e-10 Score=61.51 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=41.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccC-CEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCG-EVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.++|||+|||..+++++|+++|..+| .|..+.++.. .+|+|||+|.+
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~ 198 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGS 198 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECC
Confidence 58899999999999999999999999 9999887542 36899999976
No 200
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=3e-09 Score=52.87 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=41.1
Q ss_pred CCCCCCcEEEEecCCCCCC-----------HHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 8 PRIEGMVSLKVDNLTYRTT-----------PDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 8 ~~~~~~~~l~v~~l~~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+...++|++.||..... +++|+++|.+||.|..+.+ .++ .++|||||+|.+
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~ 73 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRD 73 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSC
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECC
Confidence 3455568999999944432 4799999999999999955 443 379999999975
No 201
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=5.5e-09 Score=53.04 Aligned_cols=50 Identities=20% Similarity=0.077 Sum_probs=43.9
Q ss_pred CCCCCcEEEEecCCCC-CCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 9 RIEGMVSLKVDNLTYR-TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 9 ~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.-..++-|+|+||+.. +++++|++.|+.+|.|..+.++.+.. .|||+|.+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~ 64 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKE 64 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECC
Confidence 4566789999999999 99999999999999999999877654 38999976
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.89 E-value=3.9e-10 Score=55.71 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=35.6
Q ss_pred EecCCCCCCHHHHHHHh------------hccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 18 VDNLTYRTTPDDLRRVF------------ERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 18 v~~l~~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+|++.+++++|++.| ++||.|.++.++.+. +++++|||||+|.+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~ 77 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRR 77 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECC
Confidence 34555666666666555 999999999998875 57899999999976
No 203
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.79 E-value=2e-08 Score=49.64 Aligned_cols=52 Identities=25% Similarity=0.215 Sum_probs=41.2
Q ss_pred CcEEEEecC--CCCCC--------HHHHHHHhhccCCEEEEEEeecCCC--CCcccEEEEEEee
Q psy7053 13 MVSLKVDNL--TYRTT--------PDDLRRVFERCGEVGDIYIPRDRFT--RESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l--~~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~g~~fv~f~~ 64 (65)
++.|.+.|+ |.... +++|++.|++||.|.++.++.++.+ +.++|++||+|.+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~ 68 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTS 68 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESS
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECC
Confidence 477888887 33332 3689999999999999999887654 4678999999975
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.70 E-value=4.1e-08 Score=49.48 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=42.3
Q ss_pred CCcEEEEecCCC--CC---CHHHHHHHhhccCCEEEEEEeecCC----CCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTY--RT---TPDDLRRVFERCGEVGDIYIPRDRF----TRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~--~~---~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~~fv~f~~ 64 (65)
.++.|++.|+-. +. -+++|++.|++||.|.++.++.++. ++.++|++||+|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~ 80 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSI 80 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECC
Confidence 357899999832 22 2589999999999999999988754 45678999999975
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.14 E-value=2.1e-06 Score=42.97 Aligned_cols=48 Identities=21% Similarity=0.363 Sum_probs=35.6
Q ss_pred CcEEEEecCCCCCC----------HHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTT----------PDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
++.|.+.|+=.... +++|++.|++||.|.++.+..+. .+|++||+|.+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~ 64 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPS 64 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSS
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECC
Confidence 46788887622211 25789999999999998875542 58999999975
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.93 E-value=2.6e-05 Score=42.40 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=32.4
Q ss_pred CHHHHHHHhhccCCEEEEEEeec----CCCCCcccEEEEEEee
Q psy7053 26 TPDDLRRVFERCGEVGDIYIPRD----RFTRESRGFAFVRLLL 64 (65)
Q Consensus 26 ~~~~l~~~f~~~g~i~~~~~~~~----~~~~~~~g~~fv~f~~ 64 (65)
.++++.+.|..||.|..+.+..+ +.++.++|++||+|.+
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~ 184 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSI 184 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESS
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECC
Confidence 45789999999999999988744 3556899999999975
No 207
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0017 Score=32.52 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=41.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcc-----CCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 10 IEGMVSLKVDNLTYRTTPDDLRRVFERC-----GEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 10 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.+..+++-+-|||..+++..++.+..++ |.+.++.++.|. +-|+|+|.+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d 71 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRD 71 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSC
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEcc
Confidence 3446889999999999999999999999 999999887764 458899875
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.18 E-value=0.0022 Score=30.95 Aligned_cols=44 Identities=25% Similarity=0.223 Sum_probs=32.6
Q ss_pred CcEEEEecCCC----C-CCH---HHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTY----R-TTP---DDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~----~-~~~---~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..||+|.-.+. . .++ .+|.+.|.+||.+..++++.++ +||+|..
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d 58 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLE 58 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESS
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECC
Confidence 36788876652 2 232 5788999999999999988764 7999964
No 209
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.60 E-value=0.0095 Score=29.21 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=32.2
Q ss_pred EEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 16 l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
|+.-+.|......+|.++|++||.+ .+.++-|- -|||.|.+
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~ 48 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQ 48 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEE
T ss_pred EEEEeCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecC
Confidence 4444999999999999999999954 77787762 47777764
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.55 E-value=0.018 Score=28.16 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=32.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.-+++ +.|......+|.++|++||.+ .+.++-|- -|||.|.+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~ 58 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQ 58 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSC
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecC
Confidence 34555 999999999999999999965 67777652 46776654
No 211
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.12 E-value=0.0099 Score=28.88 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=33.5
Q ss_pred CcEEEEecCCCC------CCH---HHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 13 MVSLKVDNLTYR------TTP---DDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~------~~~---~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..||+|.-++.. .++ .+|.+.|..||.+..++++.++ +||+|..
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d 67 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFAD 67 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSC
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcC
Confidence 478999887632 332 4688899999999888888864 8999864
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.94 E-value=0.047 Score=26.20 Aligned_cols=51 Identities=10% Similarity=0.040 Sum_probs=37.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCc--ccEEEEEEee
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRES--RGFAFVRLLL 64 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~--~g~~fv~f~~ 64 (65)
.+|-|..||...+++.+.+.+.....+.....+....+.+. ..-|||.|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~ 54 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKN 54 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESS
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCC
Confidence 47899999999999999999998877776666554433332 2567888754
No 213
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.58 E-value=0.015 Score=35.40 Aligned_cols=47 Identities=6% Similarity=0.175 Sum_probs=34.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..+.|+|. .|...++.+|.+.|+.+|.|..+.+-.+ . .-|+.|+|.+
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~---g~~~~vef~~ 98 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--F---GLYAVVEFCQ 98 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--S---SEEEEEECC-
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--C---CeEEEEEeCC
Confidence 34789997 7999999999999999999988765432 2 2599999974
No 214
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.01 E-value=0.19 Score=24.39 Aligned_cols=52 Identities=8% Similarity=-0.023 Sum_probs=33.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCc--ccEEEEEEee
Q psy7053 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRES--RGFAFVRLLL 64 (65)
Q Consensus 13 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~--~g~~fv~f~~ 64 (65)
+-+|-|+.||...+++.+.+.+...-.+.....+....+.+. -.-|||.|.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~ 62 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRN 62 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCC
Confidence 357899999999999999988887655544333322222211 1456777753
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.72 E-value=0.83 Score=22.47 Aligned_cols=45 Identities=20% Similarity=0.067 Sum_probs=33.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhc-----cCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 12 GMVSLKVDNLTYRTTPDDLRRVFER-----CGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 12 ~~~~l~v~~l~~~~~~~~l~~~f~~-----~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
..++|.|.|+|..+.++.|.-+|+. -|.+..+.. .+ +-|+|.|..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~--~~------~~AvItF~d 56 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR--LG------CGGVLTFRE 56 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE--ET------TEEEEEESS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE--cC------CcEEEEEcC
Confidence 3489999999999999999999986 245655543 21 457888853
No 216
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=69.79 E-value=17 Score=22.44 Aligned_cols=41 Identities=29% Similarity=0.349 Sum_probs=29.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEe
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLL 63 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~ 63 (65)
..++++ .|..+...+|.+.|+.+|.+ +++++-+ ..+||.|.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~ 481 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLS 481 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECS
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEEC
Confidence 456665 88888899999999999965 5666554 24677664
No 217
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=69.16 E-value=10 Score=21.32 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=26.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeec
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRD 48 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~ 48 (65)
.-+.++|+|+.++...+..++.. ..+....++.+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 45789999999999999998877 66766665543
No 218
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=65.61 E-value=11 Score=18.84 Aligned_cols=47 Identities=9% Similarity=0.083 Sum_probs=31.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeecCCCCCcccEEEEEEee
Q psy7053 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLLL 64 (65)
Q Consensus 11 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 64 (65)
.....|-|-+.|... ...+...|..||.|.+.... ....+-.|.|.+
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s 68 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQS 68 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESS
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCC
Confidence 345778888888885 55666678999999876541 123456666654
No 219
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=62.71 E-value=4 Score=23.04 Aligned_cols=35 Identities=17% Similarity=0.040 Sum_probs=27.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCCEEEEEEeec
Q psy7053 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRD 48 (65)
Q Consensus 14 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~ 48 (65)
.-..|+|+|+.++...+..++.....+..+.++.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 45789999999999999999876556666665543
No 220
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=56.55 E-value=5.5 Score=18.09 Aligned_cols=9 Identities=33% Similarity=0.966 Sum_probs=7.1
Q ss_pred cccEEEEEE
Q psy7053 54 SRGFAFVRL 62 (65)
Q Consensus 54 ~~g~~fv~f 62 (65)
.||||||.=
T Consensus 13 ~KGfGFI~~ 21 (74)
T 2k5n_A 13 DKGFGFIKD 21 (74)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEec
Confidence 479999964
No 221
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=55.39 E-value=19 Score=19.90 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=23.2
Q ss_pred EEEEecCCCCCCHHHHHHHhhccCCEEEEEEe
Q psy7053 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIP 46 (65)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~ 46 (65)
-+.|+|+|+.++...+..++.....+....++
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m 123 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMHFM 123 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEEEE
Confidence 57889999999998888777654445554443
No 222
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=54.80 E-value=4.6 Score=22.43 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=25.6
Q ss_pred EEEecCCCCCCHHHHHHHhhccCCEEEEEEeec
Q psy7053 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRD 48 (65)
Q Consensus 16 l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~ 48 (65)
..|+|+|+.++...+..++.....+....++.+
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Q 131 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQ 131 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEEe
Confidence 378999999999999998886666666655543
No 223
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=54.66 E-value=2.6 Score=21.73 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=7.2
Q ss_pred cccEEEEEEe
Q psy7053 54 SRGFAFVRLL 63 (65)
Q Consensus 54 ~~g~~fv~f~ 63 (65)
.+|||||.-+
T Consensus 20 ~kGfGFI~~~ 29 (148)
T 3ts2_A 20 RMGFGFLSMT 29 (148)
T ss_dssp TTTEEEEEEE
T ss_pred CCCeeEEeeC
Confidence 4689998753
No 224
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=54.63 E-value=6.2 Score=17.45 Aligned_cols=9 Identities=33% Similarity=0.944 Sum_probs=7.0
Q ss_pred cccEEEEEE
Q psy7053 54 SRGFAFVRL 62 (65)
Q Consensus 54 ~~g~~fv~f 62 (65)
.+|||||.=
T Consensus 12 ~kGfGFI~~ 20 (67)
T 3cam_A 12 AKGFGFITP 20 (67)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEec
Confidence 479999863
No 225
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=54.43 E-value=6.2 Score=17.92 Aligned_cols=9 Identities=11% Similarity=0.575 Sum_probs=7.1
Q ss_pred cccEEEEEE
Q psy7053 54 SRGFAFVRL 62 (65)
Q Consensus 54 ~~g~~fv~f 62 (65)
.||||||.=
T Consensus 11 ~KGfGFI~~ 19 (74)
T 2kcm_A 11 AKKYGFIQG 19 (74)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEec
Confidence 479999964
No 226
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=54.13 E-value=6.4 Score=17.28 Aligned_cols=9 Identities=22% Similarity=1.014 Sum_probs=6.9
Q ss_pred cccEEEEEE
Q psy7053 54 SRGFAFVRL 62 (65)
Q Consensus 54 ~~g~~fv~f 62 (65)
.+|||||.=
T Consensus 12 ~kGfGFI~~ 20 (66)
T 1c9o_A 12 EKGYGFIEV 20 (66)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEec
Confidence 479999863
No 227
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=52.41 E-value=7 Score=17.57 Aligned_cols=8 Identities=25% Similarity=1.066 Sum_probs=6.5
Q ss_pred cccEEEEE
Q psy7053 54 SRGFAFVR 61 (65)
Q Consensus 54 ~~g~~fv~ 61 (65)
.+|||||.
T Consensus 12 ~kGfGFI~ 19 (73)
T 3a0j_A 12 EKGYGFIE 19 (73)
T ss_dssp TTTEEEEE
T ss_pred CCCEEEEe
Confidence 47999986
No 228
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=51.50 E-value=7.3 Score=17.81 Aligned_cols=9 Identities=22% Similarity=0.759 Sum_probs=7.1
Q ss_pred cccEEEEEE
Q psy7053 54 SRGFAFVRL 62 (65)
Q Consensus 54 ~~g~~fv~f 62 (65)
.+|||||.=
T Consensus 19 ~kGfGFI~~ 27 (79)
T 1h95_A 19 RNGYGFINR 27 (79)
T ss_dssp TTTEEEEEE
T ss_pred CCCcEEEec
Confidence 479999864
No 229
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=51.49 E-value=7.5 Score=17.07 Aligned_cols=9 Identities=22% Similarity=0.844 Sum_probs=6.9
Q ss_pred cccEEEEEE
Q psy7053 54 SRGFAFVRL 62 (65)
Q Consensus 54 ~~g~~fv~f 62 (65)
.+|||||.=
T Consensus 11 ~kGfGFI~~ 19 (66)
T 1g6p_A 11 KKGYGFITK 19 (66)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEec
Confidence 479999863
No 230
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=51.32 E-value=15 Score=20.23 Aligned_cols=32 Identities=16% Similarity=-0.031 Sum_probs=23.3
Q ss_pred EEEEecCCCCCCHHHHHHHhhccCCEEEEEEe
Q psy7053 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIP 46 (65)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~ 46 (65)
-+.++|+|+.++...+..++.....+....++
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m 128 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCVPLAVFM 128 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGCSEEEEE
T ss_pred cEEEEECchhccHHHHHHHHhcCCCCceEEEE
Confidence 47889999999999888888754434444443
No 231
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=49.80 E-value=8.2 Score=17.23 Aligned_cols=9 Identities=44% Similarity=0.984 Sum_probs=6.9
Q ss_pred cccEEEEEE
Q psy7053 54 SRGFAFVRL 62 (65)
Q Consensus 54 ~~g~~fv~f 62 (65)
.+|||||.=
T Consensus 16 ~kGfGFI~~ 24 (71)
T 3i2z_B 16 SKGFGFITP 24 (71)
T ss_dssp TTTEEEEEE
T ss_pred CCCcEEEec
Confidence 479999863
No 232
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=49.54 E-value=8.1 Score=18.28 Aligned_cols=8 Identities=38% Similarity=0.920 Sum_probs=6.7
Q ss_pred cccEEEEE
Q psy7053 54 SRGFAFVR 61 (65)
Q Consensus 54 ~~g~~fv~ 61 (65)
.|||+||.
T Consensus 19 ~KGfGFI~ 26 (90)
T 3ulj_A 19 RMGFGFIS 26 (90)
T ss_dssp TTTEEEEE
T ss_pred CCCeEEeE
Confidence 57999996
No 233
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=48.59 E-value=19 Score=21.22 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=17.7
Q ss_pred EEEEecCCCCCCHHHHHHHhh
Q psy7053 15 SLKVDNLTYRTTPDDLRRVFE 35 (65)
Q Consensus 15 ~l~v~~l~~~~~~~~l~~~f~ 35 (65)
-..|+|||+.++..-+.+++.
T Consensus 144 ~~vvaNLPYnIstpil~~ll~ 164 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLS 164 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHH
Confidence 478999999999988777776
No 234
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=45.12 E-value=11 Score=17.71 Aligned_cols=8 Identities=25% Similarity=0.700 Sum_probs=6.5
Q ss_pred ccEEEEEE
Q psy7053 55 RGFAFVRL 62 (65)
Q Consensus 55 ~g~~fv~f 62 (65)
+|||||.=
T Consensus 28 kGfGFI~~ 35 (88)
T 2yty_A 28 DNFGFIET 35 (88)
T ss_dssp SSEEEEEC
T ss_pred CCccEEec
Confidence 69999863
No 235
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=44.52 E-value=11 Score=18.00 Aligned_cols=9 Identities=22% Similarity=0.623 Sum_probs=7.0
Q ss_pred cccEEEEEE
Q psy7053 54 SRGFAFVRL 62 (65)
Q Consensus 54 ~~g~~fv~f 62 (65)
.+|||||.=
T Consensus 27 ~KGfGFI~~ 35 (97)
T 2ytx_A 27 KEAFGFIER 35 (97)
T ss_dssp CSSEEEEEC
T ss_pred eCCceEEec
Confidence 469999863
No 236
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=43.95 E-value=11 Score=17.67 Aligned_cols=8 Identities=13% Similarity=0.663 Sum_probs=6.6
Q ss_pred ccEEEEEE
Q psy7053 55 RGFAFVRL 62 (65)
Q Consensus 55 ~g~~fv~f 62 (65)
+||+||.=
T Consensus 28 KGfGFI~~ 35 (89)
T 1wfq_A 28 TSYGFIQC 35 (89)
T ss_dssp SSEEEEEE
T ss_pred CCeeEEec
Confidence 79999964
No 237
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=40.59 E-value=13 Score=19.29 Aligned_cols=10 Identities=30% Similarity=0.610 Sum_probs=7.7
Q ss_pred cccEEEEEEe
Q psy7053 54 SRGFAFVRLL 63 (65)
Q Consensus 54 ~~g~~fv~f~ 63 (65)
.||||||.-+
T Consensus 73 ~KGfGFI~~d 82 (147)
T 3aqq_A 73 SKGHGFITPA 82 (147)
T ss_dssp TTTEEEEEES
T ss_pred CCCeEEeccC
Confidence 4799999753
No 238
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=40.08 E-value=12 Score=17.12 Aligned_cols=9 Identities=22% Similarity=0.619 Sum_probs=6.9
Q ss_pred cccEEEEEE
Q psy7053 54 SRGFAFVRL 62 (65)
Q Consensus 54 ~~g~~fv~f 62 (65)
.|||+||.-
T Consensus 17 ~KGfGFI~~ 25 (79)
T 2ytv_A 17 KDQFGFINY 25 (79)
T ss_dssp CSSEEEESC
T ss_pred cccceeEeC
Confidence 379999863
No 239
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=38.01 E-value=9.2 Score=18.01 Aligned_cols=8 Identities=38% Similarity=1.045 Sum_probs=6.8
Q ss_pred ccEEEEEE
Q psy7053 55 RGFAFVRL 62 (65)
Q Consensus 55 ~g~~fv~f 62 (65)
+|||||.-
T Consensus 18 KGfGFI~~ 25 (89)
T 1x65_A 18 DGFGFIKC 25 (89)
T ss_dssp TTBCEEEE
T ss_pred CCcceeec
Confidence 89999974
No 240
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=43.83 E-value=6.9 Score=17.43 Aligned_cols=8 Identities=25% Similarity=0.941 Sum_probs=6.3
Q ss_pred cccEEEEE
Q psy7053 54 SRGFAFVR 61 (65)
Q Consensus 54 ~~g~~fv~ 61 (65)
.+|||||.
T Consensus 15 ~kGfGFI~ 22 (70)
T 2lss_A 15 TKNFGFIE 22 (70)
Confidence 47999985
No 241
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=35.76 E-value=38 Score=15.94 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=16.3
Q ss_pred CEEEEEEeecCCCCCcccEEEEEEe
Q psy7053 39 EVGDIYIPRDRFTRESRGFAFVRLL 63 (65)
Q Consensus 39 ~i~~~~~~~~~~~~~~~g~~fv~f~ 63 (65)
+|+++++..-...|+-+++|-|.|.
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~d 29 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 3555655444456778888887775
No 242
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=33.02 E-value=5.8 Score=15.09 Aligned_cols=12 Identities=8% Similarity=0.039 Sum_probs=8.4
Q ss_pred CCCcEEEEecCC
Q psy7053 11 EGMVSLKVDNLT 22 (65)
Q Consensus 11 ~~~~~l~v~~l~ 22 (65)
.+.+++|+++.|
T Consensus 3 gqvrtiwvggtp 14 (36)
T 2ki0_A 3 GQVRTIWVGGTP 14 (36)
T ss_dssp CSCCCCCBCCCH
T ss_pred ceeEEEEecCCH
Confidence 345788998754
No 243
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=32.90 E-value=57 Score=17.12 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=25.3
Q ss_pred CCHHHHHHHhhccCCEE---EEEEeecCCCCCcccEEEE
Q psy7053 25 TTPDDLRRVFERCGEVG---DIYIPRDRFTRESRGFAFV 60 (65)
Q Consensus 25 ~~~~~l~~~f~~~g~i~---~~~~~~~~~~~~~~g~~fv 60 (65)
.++++|+++-...|.+. ++++..+..+|+.+.+||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 47889999888888543 4555555348888888763
No 244
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=30.87 E-value=19 Score=13.11 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=13.3
Q ss_pred cCCCCCCHHHHHHHhhccCCE
Q psy7053 20 NLTYRTTPDDLRRVFERCGEV 40 (65)
Q Consensus 20 ~l~~~~~~~~l~~~f~~~g~i 40 (65)
|.|+++.-..-.+.+..+|..
T Consensus 2 naPFeiGi~ls~~~y~~yG~~ 22 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRA 22 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSC
T ss_pred CCceeEeeEecHHHHHHHhHH
Confidence 456666665566667777754
No 245
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=29.57 E-value=56 Score=15.98 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=16.0
Q ss_pred CEEEEEEeecCCCCCcccEEEEEEe
Q psy7053 39 EVGDIYIPRDRFTRESRGFAFVRLL 63 (65)
Q Consensus 39 ~i~~~~~~~~~~~~~~~g~~fv~f~ 63 (65)
.|+++++..-...|+-++++-|.|.
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~d 29 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEET
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEEC
Confidence 3555555444456778888887775
No 246
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=29.54 E-value=54 Score=15.84 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=16.1
Q ss_pred CEEEEEEeecCCCCCcccEEEEEEe
Q psy7053 39 EVGDIYIPRDRFTRESRGFAFVRLL 63 (65)
Q Consensus 39 ~i~~~~~~~~~~~~~~~g~~fv~f~ 63 (65)
.|+++++..-...|+-++++-|.|.
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~d 29 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLD 29 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 3555655444445778888877775
No 247
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=25.70 E-value=34 Score=16.19 Aligned_cols=9 Identities=33% Similarity=0.921 Sum_probs=6.8
Q ss_pred cccEEEEEE
Q psy7053 54 SRGFAFVRL 62 (65)
Q Consensus 54 ~~g~~fv~f 62 (65)
.+|||||.-
T Consensus 27 ~kGfGFI~~ 35 (101)
T 2bh8_A 27 DKGFGFITP 35 (101)
T ss_dssp GGTEEEEEE
T ss_pred CCCCEEEEe
Confidence 469999864
No 248
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.65 E-value=71 Score=15.55 Aligned_cols=33 Identities=9% Similarity=0.058 Sum_probs=23.3
Q ss_pred CCcEEEEecCCCCC-C----HHHHHHHhhccCCEEEEE
Q psy7053 12 GMVSLKVDNLTYRT-T----PDDLRRVFERCGEVGDIY 44 (65)
Q Consensus 12 ~~~~l~v~~l~~~~-~----~~~l~~~f~~~g~i~~~~ 44 (65)
-..+|.+.||+.++ . ...++++|..++.+....
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~ 41 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQ 41 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCccee
Confidence 34789999998754 2 246788888888665543
Done!