RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7053
(65 letters)
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 103
Score = 87.3 bits (217), Expect = 8e-25
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
S G P ++GM++LKVDNLTYRT+PD LRRVFE+ G VGD+YIPR+ T+ RGFAFVR
Sbjct: 2 SSGSSGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVR 61
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding
protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Length = 135
Score = 82.1 bits (203), Expect = 2e-22
Identities = 50/61 (81%), Positives = 56/61 (91%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MSYGRPPP +EGM SLKVDNLTYRT+PD LRRVFE+ G VGD+YIPRDR+T+ESRGFAFV
Sbjct: 35 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 94
Query: 61 R 61
R
Sbjct: 95 R 95
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT
arginine/serine-rich 2, S35, splicing factor SC35,; RRM
domain, cell WALL; NMR {Streptococcus SP}
Length = 158
Score = 81.0 bits (200), Expect = 9e-22
Identities = 42/60 (70%), Positives = 49/60 (81%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+ +EGM SLKVDNLTYRT+PD LRRVFE+ G VGD+YIPRDR+T+ESRGFAFVR
Sbjct: 59 HHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 118
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 103
Score = 78.4 bits (194), Expect = 2e-21
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
P R + +++V NL+ T DL+ +F G + IY+ +D+ T +S+GFAF+
Sbjct: 6 SGPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFIS 63
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing
factor, RNA protein complex, SMN, binding protein-RNA
complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Length = 129
Score = 74.8 bits (184), Expect = 1e-19
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ + L V L+ TT DLR VF + G + D+ I D+ +R SRGFAFV
Sbjct: 34 SRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 93
Query: 61 R 61
Sbjct: 94 Y 94
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 95
Score = 73.4 bits (181), Expect = 2e-19
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+ L V L+ TT DLR VF + G + D+ I D+ +R SRGFAFV
Sbjct: 6 SGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVY 63
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition
motif, RRM, RNA binding domain, RBD, RNP, structural
genomics; NMR {Mus musculus} SCOP: d.58.7.1
Length = 99
Score = 72.2 bits (178), Expect = 6e-19
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
G L V NL+Y ++ +DL ++F G + +++ P D T++ +GFAFV
Sbjct: 2 SSGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVT 56
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein
1; RRM domain, RBD, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 94
Score = 69.2 bits (170), Expect = 6e-18
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MS G P + ++ V NL + T +DL R+F + G+V + I +D+ TR+S+G AF+
Sbjct: 8 MSGGLAPSK----STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFI 63
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural
genomics, joint center for struc genomics, JCSG,
protein structure initiative; HET: PGE; 1.95A {Homo
sapiens} PDB: 3b4d_A 3b4m_A
Length = 89
Score = 65.6 bits (161), Expect = 1e-16
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
S+ V N+ Y T ++L F CG V + I D+F+ +GFA++
Sbjct: 8 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYI 53
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing,
mRNA splicing, mRNA transport, nonsense-mediated mRNA
decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB:
2j0q_D*
Length = 126
Score = 66.6 bits (163), Expect = 2e-16
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
P R L V + T +D+ F GE+ +I++ DR T +G+ V
Sbjct: 13 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVE 70
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A)
binding, structural genomics, protein structure
initiative, PSI-2; NMR {Xenopus laevis}
Length = 124
Score = 64.7 bits (158), Expect = 8e-16
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
S+ V N+ Y +T DL F CG + I I D+F+ +G+A++
Sbjct: 38 SVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYI 83
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 63.1 bits (154), Expect = 3e-15
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
L R P DL F G+V D+ I DR +R S+G A+V
Sbjct: 30 CMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYV 72
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP
domain, MIF4G domain, RNA maturation, RNA export,
nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP:
d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B
3fey_B 1h6k_X
Length = 156
Score = 64.1 bits (156), Expect = 3e-15
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
++ +L V NL++ TT + + +F + G++ I + D+ + + GF FV
Sbjct: 28 DNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFV 86
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2dgq_A
Length = 106
Score = 62.7 bits (153), Expect = 3e-15
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
S G + + L + + DL+ +FE G++ ++ + +DRFT +G AF+
Sbjct: 2 SSGSSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLT 61
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation,
RRM domain, transcr; NMR {Homo sapiens}
Length = 140
Score = 63.3 bits (154), Expect = 5e-15
Identities = 19/59 (32%), Positives = 22/59 (37%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
G L V L L F G++ DI IP D T + RGFAFV
Sbjct: 52 GSGGSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFV 110
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper),
RRM2 domain, solution structure, structural genomics,
PSI-2; NMR {Homo sapiens}
Length = 108
Score = 61.9 bits (151), Expect = 7e-15
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
G + L V +L + T D LR +FE G + I + D T S+G+ F+
Sbjct: 18 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 73
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin
modification, transcription regulation, structural
genomics, structural genomics consortium; 1.30A {Homo
sapiens}
Length = 110
Score = 61.3 bits (149), Expect = 2e-14
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
G+ P + + L L+ + + GEV ++ I TR+ G A V
Sbjct: 2 GQIPLK-----EVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVL 54
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49)
(SAP 49) (SF3B50)...; structure genomics,RRM
domain,splicing factor 3B; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 105
Score = 60.7 bits (148), Expect = 2e-14
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
P ++ V L + + L +F + G V + ++P+DR T + +G+ FV
Sbjct: 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFV 62
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding
proteins, RNA binding protein/SS-DNA binding protein
complex; NMR {Helicobacter pylori}
Length = 90
Score = 59.9 bits (146), Expect = 3e-14
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
M ++ V NL Y T + ++ +F + G+V ++ + DR T++ +GF FV
Sbjct: 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFV 48
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Length = 95
Score = 60.0 bits (146), Expect = 3e-14
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCG--EVGDIYIPRDRFTRESRGFAFVR 61
++ + N+ T D + V +I + +D+ T+++RGFAFV+
Sbjct: 11 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQ 59
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.54A {Homo sapiens}
Length = 95
Score = 60.0 bits (146), Expect = 3e-14
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
S G P + E ++ V NL R + L +F + G + + I +DR + + F FV
Sbjct: 5 SSGMFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGK-PKSFGFV 62
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger,
CYP33, MLL, RNA binding protein, ALT splicing, mRNA
processing, mRNA splicing; 1.85A {Homo sapiens} PDB:
2kyx_A 3lpy_A*
Length = 85
Score = 59.5 bits (145), Expect = 4e-14
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V L L F G++ DI IP D T + RGFAFV
Sbjct: 12 VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFV 54
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 102
Score = 59.2 bits (144), Expect = 7e-14
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V L L F G++ DI IP D T + RGFAFV
Sbjct: 17 VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFV 59
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA
binding domain, RBD, RNP, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 95
Score = 58.7 bits (143), Expect = 1e-13
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V +L + T D LR +FE G++ +I + +D T S+G+ F+
Sbjct: 10 VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 52
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding
protein, GU-rich RNA, structure; NMR {Trypanosoma
cruzi} SCOP: d.58.7.1
Length = 139
Score = 59.4 bits (144), Expect = 2e-13
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ P + + +L V+ + LR++FER G + + I DR TR+SRG+ FV
Sbjct: 34 QMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFV 89
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
d.58.7.1
Length = 107
Score = 58.5 bits (142), Expect = 2e-13
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDR-FTRESRGFAFV 60
P+ + + V N+ ++ ++R +F GE+ + +P+ T RGF FV
Sbjct: 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFV 63
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription,
splicing, RNA processing, nonsense mediated D NMD,
HDAC, histone deacetylation; 1.90A {Homo sapiens}
Length = 88
Score = 57.9 bits (141), Expect = 2e-13
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRF-TRESRGFAFV 60
+ LT T D + +F G++ I +P +R S+G+A+V
Sbjct: 9 IGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYV 52
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing,
protein complex, EXON junct complex, signaling protein;
1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB:
2hyi_B* 2j0s_D* 2xb2_D*
Length = 110
Score = 58.1 bits (141), Expect = 2e-13
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
P +EG L V ++ D+++ F GE+ +I++ DR T S+G+A V
Sbjct: 20 PQRSVEGW-ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALV 73
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: d.58.7.1
Length = 102
Score = 57.6 bits (140), Expect = 3e-13
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V L++ T L +VF + G++ ++ + +DR T+ SRGF FV
Sbjct: 17 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFV 59
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 115
Score = 58.1 bits (141), Expect = 3e-13
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ NL+ R T DL +F R E I T RG AF+
Sbjct: 30 LKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFI 72
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA
recognition motif, RRM, RNP, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Length = 99
Score = 56.9 bits (138), Expect = 7e-13
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
L V NL T +++R++FE+ G+ G+++I +D +GF F+R
Sbjct: 7 GGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIR 57
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition
motif, C-terminal helix, N-terminal helix, RNA binding
protein; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 104
Score = 56.9 bits (138), Expect = 7e-13
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
P + S+ V N+ Y T + L+ +F G V + DR T + +G+ F
Sbjct: 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFC 55
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar
mRNA localization, translation; 1.90A {Drosophila
melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Length = 165
Score = 58.3 bits (141), Expect = 8e-13
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
P R L V ++ D+++ F GE+ +I++ DR T S+G+A V
Sbjct: 63 EPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALV 119
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: d.58.7.1
Length = 111
Score = 57.0 bits (138), Expect = 8e-13
Identities = 11/56 (19%), Positives = 26/56 (46%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
P + ++ + NL++ + + L V ++ G++ + + T S+G AF
Sbjct: 7 GLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFA 62
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation
factors PAIP1 and PAIP2, translation-RNA complex; 2.00A
{Homo sapiens} PDB: 1cvj_A*
Length = 213
Score = 58.1 bits (141), Expect = 2e-12
Identities = 19/60 (31%), Positives = 25/60 (41%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ P M SL V +L T L F G + I + RD TR S G+A+V
Sbjct: 3 LGSMNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYV 62
Score = 38.8 bits (91), Expect = 2e-05
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
S P R G+ ++ + NL L F G + + D S+G+ FV
Sbjct: 91 WSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFV 148
Query: 61 R 61
Sbjct: 149 H 149
>1x4e_A RNA binding motif, single-stranded interacting protein 2;
structural genomics, RRM domain, NPPSFA; NMR {Homo
sapiens} SCOP: d.58.7.1
Length = 85
Score = 54.8 bits (133), Expect = 3e-12
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ L TT DL ++ + G++ D+ T + +G+ FV
Sbjct: 10 IRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFV 52
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain,
structural genomics, NPPSFA; NMR {Mus musculus} PDB:
2rne_A 2dh7_A
Length = 115
Score = 55.8 bits (135), Expect = 3e-12
Identities = 13/58 (22%), Positives = 25/58 (43%)
Query: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+ V +L+ T +D++ F G + D + +D T +S+G+ FV
Sbjct: 6 SGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVS 63
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding
protein, hnRNP, telomere, DNA-binding protein, RNA
binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB:
1wtb_A 1x0f_A
Length = 75
Score = 54.4 bits (132), Expect = 3e-12
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V L+ T + +R F GEV I +P D T + RGF F+
Sbjct: 4 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 46
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A
{Homo sapiens} SCOP: d.58.7.1
Length = 106
Score = 55.3 bits (134), Expect = 3e-12
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V + T +D+ F GE+ +I++ DR T +G+ V
Sbjct: 28 VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLV 70
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex,
mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB:
2x1b_A 2x1a_A 2km8_B
Length = 96
Score = 54.9 bits (133), Expect = 3e-12
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ ++ Y T + + + G V ++ + D T S+G+AF+
Sbjct: 7 LGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFI 49
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM
domaim, RDB, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 55.0 bits (133), Expect = 4e-12
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
R +E L + L + T ++L + + G V D+ + +R + +G A+V
Sbjct: 10 RYSTSLEKH-KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYV 63
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 99
Score = 54.5 bits (132), Expect = 4e-12
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V + + +LR F++ G V ++ + D + RGF F+
Sbjct: 15 VGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 57
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA
binding protein, structure, protein-RNA complex, RNA
stem-loop, structural protein/RNA complex; NMR {Homo
sapiens}
Length = 116
Score = 55.0 bits (133), Expect = 5e-12
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
L + L T L+ VF + G + ++ + +DR T +SRGFAF+
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFI 53
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding,
RNA processing, mRNA processing, nonsense-mediated mRNA
decay, cleavage; NMR {Saccharomyces cerevisiae} PDB:
2km8_C
Length = 167
Score = 55.6 bits (135), Expect = 7e-12
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 5 RPPPRIEGMVSLK--VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
R PR E + K V + P + F + G + D + D+ T +SRGF FV
Sbjct: 77 RAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFV 134
Score = 55.2 bits (134), Expect = 9e-12
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+ L + TT D+LR F + G V D+ I +D T SRGF F+
Sbjct: 8 IGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLS 51
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain,
poly(A) site recognition, RNA, nuclear, RNA BIND
protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Length = 90
Score = 53.7 bits (130), Expect = 7e-12
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 14 VSLKVDNLTYRTTPDDLRRVFERCG--EVGDIYIPRDRFTRESRGFAFV 60
++L + NLT+ TT +DL G ++ +I +R +S+GFA V
Sbjct: 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALV 50
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP
A1, RNA-recognition motif, RNA- binding, UP1, RNA
binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1
d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A
1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A*
1up1_A
Length = 196
Score = 55.0 bits (133), Expect = 2e-11
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
MS P E + L + L++ TT + LR FE+ G + D + RD T+ SRGF FV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 61 R 61
Sbjct: 61 T 61
Score = 53.8 bits (130), Expect = 5e-11
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V + T LR FE+ G++ I I DR + + RGFAFV
Sbjct: 109 VGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM,
RNA binding domain, RBD, RNP, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 103
Score = 53.4 bits (129), Expect = 2e-11
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
V L ++TT DL+ F GEV + + +D T S+GF FVR
Sbjct: 20 VLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVR 63
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR
{Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Length = 75
Score = 52.5 bits (127), Expect = 2e-11
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V L+ TT +D++ FE+ G+V D + D+ T RGF FV
Sbjct: 4 VGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFV 46
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD,
RNP, poly(U) binding, nucleus, RNA-binding, binding
protein; 1.60A {Saccharomyces cerevisiae}
Length = 83
Score = 52.5 bits (127), Expect = 2e-11
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
V +L + LR F+ ++ D T SRG+ FV
Sbjct: 6 VGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVS 49
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA
complex, AU-rich element, transcription/RNA complex;
1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB:
1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Length = 167
Score = 54.5 bits (132), Expect = 2e-11
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+L V+ L T ++ R +F GE+ + RD+ T +S G+ FV
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV 49
Score = 47.2 bits (113), Expect = 1e-08
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
SY RP +L V L T +L ++F + G + I D+ T SRG F+R
Sbjct: 77 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 136
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 54.7 bits (131), Expect = 3e-11
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCG--EVGDIYIPRDRFTRESRGFAFV 60
++L + NLT+ TT +DL G ++ +I +R +S+GFA V
Sbjct: 59 NVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALV 117
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A
{Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Length = 216
Score = 54.6 bits (132), Expect = 3e-11
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ + M + V ++ Y D +R+ F G + I + D T + +GFAFV
Sbjct: 20 QRQGALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFV 75
Score = 45.8 bits (109), Expect = 6e-08
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V ++ + DD++ VFE G++ + RD T + +G+ F+
Sbjct: 130 VASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFI 172
>1b7f_A Protein (SXL-lethal protein), RNA
(5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing
regulation, RNP domain, RNA complex; 2.60A {Drosophila
melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A*
1sxl_A 2sxl_A
Length = 168
Score = 53.7 bits (130), Expect = 4e-11
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+L V+ L T +L +F G + I RD T S G+AFV
Sbjct: 5 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFV 50
Score = 50.6 bits (122), Expect = 5e-10
Identities = 23/60 (38%), Positives = 28/60 (46%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
SY RP +L V NL T D L +F + G + I RD+ T RG AFVR
Sbjct: 78 SYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVR 137
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 102
Score = 52.3 bits (126), Expect = 4e-11
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 2 SYGRPPPRIEGMVSLK--VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAF 59
S G P S V L+ TT + L+ F I DR T S+GF F
Sbjct: 2 SSGSSGPNARSQPSKTLFVKGLSEDTTEETLKESF---DGSVRARIVTDRETGSSKGFGF 58
Query: 60 V 60
V
Sbjct: 59 V 59
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif,
RRM, RNA binding domain, RBD, RNP, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 93
Score = 51.9 bits (125), Expect = 4e-11
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
GM L + NL+ T DDLR++F +P G+AFV
Sbjct: 6 SGMNKLYIGNLSPAVTADDLRQLFGDRK------LPLAGQVLLKSGYAFV 49
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 103
Score = 52.3 bits (126), Expect = 5e-11
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
S G + L V N+ +R DLR++F + G++ D+ I + R S+GF FV
Sbjct: 4 GSSGNSESKSTPK-RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFV 60
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 116
Score = 52.3 bits (126), Expect = 5e-11
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V L Y TT LR+ FE G++ + + DR T +SRG+ FV
Sbjct: 22 VGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 64
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA
complex, RRM, RBD, RNA binding protein- complex; NMR
{Mus musculus}
Length = 109
Score = 52.3 bits (126), Expect = 5e-11
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 21 LTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
L+++TT + LR F + GEV + + RD T+ SRGF FV
Sbjct: 33 LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFV 72
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2dnk_A 2dno_A
Length = 105
Score = 51.9 bits (125), Expect = 7e-11
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 2 SYGRPPPRIEGMVSLK--VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAF 59
S G G K V L + + +D+ R+F+ G + + + R S+G AF
Sbjct: 2 SSGSSGSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAF 60
Query: 60 VR 61
V+
Sbjct: 61 VK 62
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor)...; structure genomics, SURP
domain, splicing factor SF2; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 109
Score = 51.6 bits (124), Expect = 8e-11
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
P + V NL D+ VF + G + DI + R FAFV
Sbjct: 14 IRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFV 66
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding
protein; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 109
Score = 51.5 bits (124), Expect = 9e-11
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
S+ + + L V N+ +R DLR++F + G++ D+ I + R S+GF FV
Sbjct: 19 SHMNTENKSQPK-RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFV 74
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA
binding domain, RBD, RNA splicing, apoptosis,
phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Length = 87
Score = 51.0 bits (123), Expect = 9e-11
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
V +L+ T + F G + D + +D T +S+G+ FV
Sbjct: 11 VGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVS 54
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like,
structural genomics, joint center for struc genomics,
JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Length = 87
Score = 50.6 bits (122), Expect = 1e-10
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 21 LTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
L++ T+ DL+ F + GEV D I D T SRGF F+
Sbjct: 19 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFI 58
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain,
nucleolus, structural protein; NMR {Mesocricetus
auratus} SCOP: d.58.7.1
Length = 101
Score = 51.1 bits (123), Expect = 1e-10
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+L + NL + +L+ D+ + D T +R F +V
Sbjct: 10 EGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAV-VDVRTGTNRKFGYVD 64
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A
{Saccharomyces cerevisiae} PDB: 3ns5_A
Length = 100
Score = 50.9 bits (122), Expect = 1e-10
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 17 KVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ + L +F + G+V ++ P D T +++GF FV
Sbjct: 16 VIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFV 59
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA
recognition, stress granules, nucleus, RNA-binding,
transcription; NMR {Saccharomyces cerevisiae}
Length = 101
Score = 50.8 bits (122), Expect = 2e-10
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+ N+ + T DL +F+ G + D + +G F++
Sbjct: 32 IGNIPHFATEADLIPLFQNFGFILDFKHYPE------KGCCFIK 69
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex;
1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Length = 102
Score = 50.7 bits (122), Expect = 2e-10
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V + R ++R F R G V ++ I DR T S+G+ FV
Sbjct: 14 VGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFV 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain,
RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 103
Score = 50.7 bits (122), Expect = 2e-10
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+L V NL+ T + ++F + G + + + + FV
Sbjct: 17 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFV 60
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein
complex, coexpression, heterotetramer, mRNA maturation,
mRNA cleavage; 1.92A {Homo sapiens}
Length = 156
Score = 51.8 bits (124), Expect = 2e-10
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 18 VDNLTYRTTPDDLRRVFERCG--EVGDIYIPRDRFTRESRGFAFV 60
V + ++ TT L +V G +V ++ +R +S+G+A V
Sbjct: 60 VGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEV 104
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 105
Score = 50.7 bits (122), Expect = 2e-10
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 21 LTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
L + TT + LR F + GEV D I +D+ T +SRGF FV
Sbjct: 24 LDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 63
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain,
nucleolus, structural protein; NMR {Mesocricetus
auratus} SCOP: d.58.7.1
Length = 96
Score = 50.3 bits (121), Expect = 2e-10
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
++ +L NL++ T D+L+ VFE E+ +S+G A++
Sbjct: 8 CTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEI-----RLVSQDGKSKGIAYI 58
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR
{Mus musculus} SCOP: d.58.7.1
Length = 77
Score = 49.8 bits (120), Expect = 2e-10
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 21 LTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
L+++TT + LR F + GEV + + RD T+ SRGF FV
Sbjct: 8 LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFV 47
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
d.58.7.1
Length = 98
Score = 49.9 bits (120), Expect = 3e-10
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRE---SRGFAFV 60
G L + NL + TT + L+ VF + G + I + + S GF FV
Sbjct: 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFV 55
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA
processing, mRNA splicing, transport, nucleus,
RNA-binding, spliceosome, transport; NMR {Mus musculus}
Length = 124
Score = 50.4 bits (121), Expect = 4e-10
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+E L V NL + + D++ +F G + + DR R S G A V
Sbjct: 27 GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGR-SLGTADV 81
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Length = 115
Score = 50.0 bits (120), Expect = 4e-10
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 2 SYGRPPPRIEGMVSLK--VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAF 59
S G + EG + +L DL ++F G V + D+ T S+ F F
Sbjct: 12 SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF 71
Query: 60 V 60
V
Sbjct: 72 V 72
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA
binding protein-RNA complex; 1.85A {Homo sapiens} PDB:
3nna_A 3nnc_A 2dhs_A 3nnh_A
Length = 175
Score = 50.7 bits (122), Expect = 7e-10
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRE--SRGFAFV 60
V + + DLR +FE+ G V +I + RDR S+G FV
Sbjct: 8 VGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFV 52
Score = 45.7 bits (109), Expect = 4e-08
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+ ++ + T +D+R +F G++ + I R SRG AFV
Sbjct: 100 IGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVT 142
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA
splicing, adenine, mRNA processing, nucleus,
phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo
sapiens} PDB: 2f9d_A 2f9j_A 2fho_B
Length = 115
Score = 49.3 bits (118), Expect = 7e-10
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
R PP + L + NL Y+ T +++ +F + G + I + T E+RG A+V
Sbjct: 2 RLPPEVNR--ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN---TPETRGTAYV 52
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure
genomics, RRM domain, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: d.58.7.1
Length = 116
Score = 49.6 bits (119), Expect = 7e-10
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 21 LTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
L++ TT + LR +E+ G++ D + RD ++ SRGF FV
Sbjct: 35 LSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVT 75
>2la6_A RNA-binding protein FUS; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, RNA recognition; NMR {Homo
sapiens}
Length = 99
Score = 49.2 bits (118), Expect = 7e-10
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGD--------IYIPRDRFTRESRGFAFV 60
V L T + + F++ G + I + DR T + +G A V
Sbjct: 18 VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATV 68
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA
recognition motif, vincu alpha-actinin, nucleus, RNA
binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E
Length = 284
Score = 51.1 bits (123), Expect = 8e-10
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
L V NL T + G + ++ T +S+G+ F
Sbjct: 98 LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAE 143
Score = 42.3 bits (100), Expect = 1e-06
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 16 LKVDNLTYRTT-PDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
L VD L D L R + + + +GFA +
Sbjct: 187 LCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQ-LKGFAVLE 232
Score = 35.3 bits (82), Expect = 3e-04
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
+ L T ++ + + F + +G AFV L
Sbjct: 27 IRGLPGDVTNQEVHDLLSDYE-------LKYCFVDKYKGTAFVTL 64
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR
{Homo sapiens}
Length = 116
Score = 48.9 bits (117), Expect = 1e-09
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEV--------GDIYIPRDRFTRESRGFAFV 60
V L T + + F++ G + I + DR T + +G A V
Sbjct: 12 VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATV 62
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural
genomi center for structural genomics, JCSG, protein
structure INI PSI-biology; 2.54A {Homo sapiens} PDB:
1no8_A
Length = 107
Score = 48.8 bits (117), Expect = 1e-09
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+E L V NL + + D++ +F G + + DR R S G A V
Sbjct: 21 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGR-SLGTADV 75
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43
inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA;
1.65A {Mus musculus}
Length = 89
Score = 48.0 bits (115), Expect = 1e-09
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V T T ++L++ F + GEV D++IP+ R FAFV
Sbjct: 16 VGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFV 53
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 113
Score = 48.6 bits (116), Expect = 2e-09
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEV--------GDIYIPRDRFTRESRGFAFV 60
V L T DDL F++CG V I+I D+ T + +G A V
Sbjct: 20 VQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 70
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM
domain, riken structural genomics/proteomics initiative
RSGI, RNA binding protein; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 88
Score = 47.6 bits (114), Expect = 2e-09
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V T T D+LR F + G+V D++IP+ R FAFV
Sbjct: 10 VGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFV 47
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition
motif, RRM, RNA binding domain, RBD, RNP, structural
genomics; NMR {Mus musculus} SCOP: d.58.7.1
Length = 111
Score = 48.3 bits (115), Expect = 2e-09
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRLL 63
+ NL T +++ F R G +G + +P E A V L
Sbjct: 12 VILAKNLPAGTLAAEIQETFSRFGSLGRVLLP------EGGITAIVEFL 54
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 103
Score = 48.0 bits (115), Expect = 2e-09
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
E + V NL + T D+ +F+ + + + RD+ T + +GF +V
Sbjct: 7 GKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYV 61
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA
recognition motif, bruno; NMR {Drosophila melanogaster}
Length = 118
Score = 48.1 bits (115), Expect = 2e-09
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ +L T DL F G V + D+ T S+ F FV
Sbjct: 45 IYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFV 87
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 47.7 bits (114), Expect = 2e-09
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGE-VGDIYIPRDRFTRESRGFAFV 60
SL + +L + + R F GE V + I R+R T G+ FV
Sbjct: 11 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFV 57
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and
splicing factor,...; protein-RNA complex RRM alpha-beta
sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR
{Streptococcus SP} PDB: 2i38_A
Length = 150
Score = 48.7 bits (116), Expect = 2e-09
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 13 MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ V NL +L R F G + +++ R+ GFAFV
Sbjct: 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFV 115
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear
ribonucleoprotein, R binding domain, RNA binding
protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1
PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A*
3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P*
3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A*
...
Length = 97
Score = 47.6 bits (114), Expect = 3e-09
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 7 PPRIEGMVSLKVDNLTYRTTPDDLRR----VFERCGEVGDIYIPRDRFTRESRGFAFV 60
P ++ ++NL + D+L++ +F R G++ DI + R + + RG AFV
Sbjct: 2 VPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFV 56
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related
protein, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 109
Score = 47.7 bits (114), Expect = 3e-09
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+ T +R+ F G++ +I + + +G++FVR
Sbjct: 30 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVR 67
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding
protein; NMR {Homo sapiens}
Length = 101
Score = 47.7 bits (114), Expect = 3e-09
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ + V NL +L R F G + ++I R+ GFAFV
Sbjct: 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFV 42
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain,
RNA-protein complex, nucleolus, structural protein/RNA
complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1
d.58.7.1 PDB: 1rkj_A 2krr_A
Length = 175
Score = 48.8 bits (117), Expect = 3e-09
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
S+ +L + NL + +L+ D+ + R T +R F +V
Sbjct: 2 SHMVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYV 59
Score = 43.0 bits (102), Expect = 5e-07
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
GR ++ +L NL++ T D+L+ VFE E I +S+G A++
Sbjct: 88 PKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALE-----IRLVSQDGKSKGIAYI 141
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA
binding domain, RNA recognition motif, SP factor,
snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae}
SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Length = 292
Score = 49.2 bits (118), Expect = 5e-09
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
R + ++ V NL + + + F+ CG + + + +++ FA +
Sbjct: 32 NEALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADS--LKKNFRFARI 86
Score = 46.1 bits (110), Expect = 5e-08
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEV-GDIYIPRDRFTRESRGFAFV 60
+ N T ++R + + V I +P RF SR FA++
Sbjct: 122 MTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNT-SRRFAYI 164
Score = 43.1 bits (102), Expect = 6e-07
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 14 VSLKVDNLTYRTTPDD-LRRVFERCGEVGDIYIPRDRF-TRESRGFAFVR 61
+ + NL+ ++ LR FE G + I IP + + AF+
Sbjct: 211 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMV 260
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP,
RBD, poly(U) binding, tandem, acetylation, cytopla
nucleus; 2.70A {Saccharomyces cerevisiae}
Length = 166
Score = 47.9 bits (115), Expect = 5e-09
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
L V NL T D L++ F+ G + +I I D+ ++ +AFV
Sbjct: 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFV 46
Score = 43.3 bits (103), Expect = 3e-07
Identities = 13/61 (21%), Positives = 23/61 (37%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
++ + +L V +L + LR F+ ++ D T SRG+ FV
Sbjct: 75 WAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFV 134
Query: 61 R 61
Sbjct: 135 S 135
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 101
Score = 46.9 bits (112), Expect = 5e-09
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+L + NL+Y T + L+ VFE+ + + +S+G+AF+
Sbjct: 17 TLVLSNLSYSATEETLQEVFEKATFI-KVP---QNQNGKSKGYAFI 58
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed
coiled-coil, NOPS, DBHS, RNA protein, RNA binding;
1.90A {Homo sapiens} PDB: 3sde_B
Length = 261
Score = 48.9 bits (117), Expect = 6e-09
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
L V NL T +D +R+FER GE +++I RD RGF F+R
Sbjct: 14 PGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIR 64
Score = 37.7 bits (88), Expect = 5e-05
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
L V NL+ + + L + F + G V + D R + G FV
Sbjct: 99 LTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGR-ATGKGFVE 143
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition
motif, RRM, RNA binding domain, RBD, RNP, structural
genomics; NMR {Mus musculus} SCOP: d.58.7.1
Length = 97
Score = 45.3 bits (108), Expect = 2e-08
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ YG+ P L V L T+ L R F+R G + I + FA++
Sbjct: 9 IGYGKANPTT----RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYI 58
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 45.5 bits (108), Expect = 2e-08
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEV-GDIYIPRDRFTRESRGFAFVR 61
V + N+ + T D+ + E +++ D + G A V+
Sbjct: 8 EGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQ-GLGQALVQ 63
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein,
translation; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 103
Score = 44.7 bits (106), Expect = 4e-08
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ T DD++ E G+V +I + R + +G FV
Sbjct: 16 IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFV 57
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain.,
transport protein; NMR {Mus musculus}
Length = 177
Score = 46.0 bits (109), Expect = 4e-08
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+E L V NL + + D++ +F G + + DR + S G A V
Sbjct: 80 GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADV 134
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing,
transcription, RNA binding protein, mRNA processing; NMR
{Homo sapiens} PDB: 2yh1_A
Length = 198
Score = 45.8 bits (109), Expect = 6e-08
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ L D ++ + G + + +D T S+G+AF
Sbjct: 119 IGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 161
Score = 42.7 bits (101), Expect = 6e-07
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPR-----DRFTRESRGFAFV 60
V N+ + T + + F +G + + + FAF+
Sbjct: 9 VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFL 56
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 109
Score = 44.4 bits (105), Expect = 7e-08
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
S G+P P + + V + + +D+R F V +++ +D R + G V+
Sbjct: 5 SSGKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGR-NNGNGLVK 62
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed
protein, RRM, U1A, RNA binding protein; NMR {Homo
sapiens}
Length = 127
Score = 44.5 bits (105), Expect = 8e-08
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRR----VFERCGEVGDIYIPRDRFTRESRGFAF 59
G PP E + + N+ + L+ + G++ DI + + ++ G A+
Sbjct: 20 GSTPPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAY 76
Query: 60 V 60
+
Sbjct: 77 I 77
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA
splicing factor, RNA recognition motif, RNA binding
protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Length = 172
Score = 44.9 bits (107), Expect = 9e-08
Identities = 11/56 (19%), Positives = 21/56 (37%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ G L + L D ++ + G + + +D T S+G+AF
Sbjct: 86 HDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 141
Score = 42.6 bits (101), Expect = 6e-07
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPR-----DRFTRESRGFAFV 60
V N+ + T + + F +G + + + FAF+
Sbjct: 9 VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFL 56
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain,
RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 94
Score = 43.5 bits (103), Expect = 9e-08
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
G+ S+ V L F G V + + +D+ FA V
Sbjct: 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDK-----GVFAIV 50
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif,
systemic lupus erythematosus, phosphoprotein, RNA
maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1
PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Length = 193
Score = 45.2 bits (106), Expect = 1e-07
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
S+ + T DD++ E G+V +I + R + +G FV
Sbjct: 97 PEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFV 155
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 103
Score = 43.7 bits (104), Expect = 1e-07
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V NL + LR+ F G + + + S+GF FV
Sbjct: 20 VKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFV 60
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 85
Score = 43.0 bits (102), Expect = 1e-07
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+L V L T DLR F + GE+ I + + + AF++
Sbjct: 14 TLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQ 54
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; 2.00A {Homo
sapiens} PDB: 2ek6_A
Length = 95
Score = 43.1 bits (102), Expect = 1e-07
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
S G+P P + +KV N+ + + D++ F + + G A V
Sbjct: 9 SSGKPGPTV-----IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVA 63
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA
recognition motif, RRM, RNA binding domain, RBD,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 43.5 bits (103), Expect = 1e-07
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 2 SYGRPPPRIEGMVSLK--VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAF 59
S G G + V NL Y+ L+ VF G V I D+ + SRG
Sbjct: 2 SSGSSGALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGK-SRGIGT 60
Query: 60 V 60
V
Sbjct: 61 V 61
>1x5o_A RNA binding motif, single-stranded interacting protein 1;
structure genomics, RRM domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 43.0 bits (102), Expect = 2e-07
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+ NL +L + + G+V I RD + SRG F R
Sbjct: 30 ISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFAR 72
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding
domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: d.58.7.1
Length = 98
Score = 42.3 bits (100), Expect = 3e-07
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEV-GDIYIPRDRFTRESRGFAFV 60
S G+P P I +KV N+ + + D++ F + G + + + G A V
Sbjct: 9 SSGKPGPTI-----IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGM-PTGEAMV 62
Query: 61 R 61
Sbjct: 63 A 63
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
2dh9_A
Length = 92
Score = 41.8 bits (99), Expect = 4e-07
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
G + V NL + T L+ F CG V I + +S+G V
Sbjct: 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVV 53
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 90
Score = 41.4 bits (98), Expect = 5e-07
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 12 GMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
GMV L + NL T ++R +FE+ G+V + I + + FV
Sbjct: 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFV 47
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B;
protein biosynthesis, RNA recognition motif, RNA
binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Length = 100
Score = 41.8 bits (99), Expect = 5e-07
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRE-SRGFAFV 60
+ + NL Y T + ++ F + + +PR+ E +GF +
Sbjct: 21 TAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYA 66
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA
recognition motif, RRM, RNA binding domain, RBD, RNP,
structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 104
Score = 41.9 bits (99), Expect = 6e-07
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRE-SRGFAFV 60
S G P+ + + NL Y T + ++ F + + +PR+ E +GF +
Sbjct: 5 SSGSRLPK-SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYA 62
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 109
Score = 41.7 bits (98), Expect = 7e-07
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 18 VDNLTYRTTPDDLRRVFERCGE-VGDIYIPRD-RFTRESRGFAFV 60
+ + +++ + E V D+ + ++RGFAFV
Sbjct: 13 IGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFV 57
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Length = 437
Score = 42.5 bits (99), Expect = 1e-06
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
P + + +L V + Y TT LRR FE G + I++ + + + RG+AF+
Sbjct: 95 PNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFI 149
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 96
Score = 40.6 bits (96), Expect = 1e-06
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGD-IYIPRDRFTRESRGFAFVR 61
+ NL L F G + I RD T S+G+AF+
Sbjct: 10 IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFIN 54
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 99
Score = 40.7 bits (96), Expect = 1e-06
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V NL T+ + + + F + + R +AFV
Sbjct: 20 VRNLMLSTSEEMIEKEFNNIKPGAVERVKK------IRDYAFV 56
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation
initiation, RNA-binding, EIF4G-binding translation;
1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Length = 115
Score = 41.1 bits (97), Expect = 1e-06
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ NL L F G + + D S+G+ FV
Sbjct: 10 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFV 50
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like,
structural genomics, joint center for struc genomics,
JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Length = 205
Score = 42.0 bits (98), Expect = 1e-06
Identities = 4/43 (9%), Positives = 10/43 (23%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
N T ++ + + G + E +
Sbjct: 128 FFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLL 170
Score = 35.1 bits (80), Expect = 4e-04
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 18 VDNL-TYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
V L + D + VF G V + + + G A V +
Sbjct: 9 VYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEM 49
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif,
alternative splicing, nuclear protein, phosphorylation,
repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1
PDB: 2jx2_A
Length = 121
Score = 40.9 bits (96), Expect = 2e-06
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Query: 23 YRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
TP LR F G + D+ + R AFV
Sbjct: 47 EDMTPTLLRGAFSPFGNIIDLSMDPP------RNCAFVT 79
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein,
ribosome biogenesis, RNA-binding, rRNA processing; NMR
{Saccharomyces cerevisiae} PDB: 2osq_A
Length = 108
Score = 40.7 bits (96), Expect = 2e-06
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 8/43 (18%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V +L +F G + ++ I GFAFV
Sbjct: 36 VRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFV 70
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA
recognition motif, G-tract, G-quadruplex, alternative
splicing, RNA binding protein; NMR {Homo sapiens} PDB:
2kg0_A
Length = 126
Score = 41.0 bits (96), Expect = 2e-06
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEV-GDIYIPRDRFTRESRGFAF 59
M G +++ L + T +++ + F V I +P D + G AF
Sbjct: 30 MGRGSNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGK-ITGEAF 88
Query: 60 VRL 62
V+
Sbjct: 89 VQF 91
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: d.58.7.1
Length = 124
Score = 41.0 bits (96), Expect = 2e-06
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEV-GDIYIPRDRFTRESRGFAF 59
R E + + L + + F++ V IYI + + G F
Sbjct: 13 QKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGK-ATGEGF 71
Query: 60 VR 61
V
Sbjct: 72 VE 73
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 90
Score = 39.5 bits (93), Expect = 3e-06
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V N++ T +LR +FER G V + + + +AFV
Sbjct: 14 VGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFV 48
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics,
RRM domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 104
Score = 39.7 bits (93), Expect = 3e-06
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEV-GDIYIPRDRFTRESRGFAFVRL 62
P +++ L + + +++ + F V + +P D R S G AFV+
Sbjct: 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGR-STGEAFVQF 64
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 123
Score = 39.9 bits (93), Expect = 4e-06
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD----IYIPRDRFTRESRGFAF 59
E V +++ L + T +++ F + + I R G AF
Sbjct: 14 VAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGR-PTGDAF 72
Query: 60 VR 61
V
Sbjct: 73 VL 74
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif,
U11/U12-65K protein, DI-snRNP, U1A protein, U2B
protein; 2.50A {Homo sapiens}
Length = 143
Score = 39.8 bits (93), Expect = 5e-06
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEV-----GDIYIPRDRFTRESRGFAFV 60
V NL DL+ +F R + ++ R +G AF+
Sbjct: 50 VKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFI 97
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H';
structural genomics, RRM domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: d.58.7.1
Length = 102
Score = 38.9 bits (91), Expect = 6e-06
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+ + L YR T +D+ F + ++I R G A V
Sbjct: 18 VHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGR-VTGEADVE 61
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Length = 282
Score = 40.2 bits (93), Expect = 7e-06
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 6 PPPRIEGMVSLKVDNLTYRTTPDDLRR----VFERCGEVGDIYIPRDRFTRESRGFAFV 60
P ++ ++NL + D+L++ +F + G++ DI + R + + RG AFV
Sbjct: 2 AVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFV 57
Score = 31.8 bits (71), Expect = 0.007
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 20 NLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
NL T L +F + ++ + R AFV
Sbjct: 214 NLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFV 249
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3,
eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo
sapiens}
Length = 81
Score = 38.5 bits (90), Expect = 7e-06
Identities = 6/44 (13%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 17 KVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+V + + ++F + G++ + + P + +++G+ F+
Sbjct: 11 QVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE--DGKTKGYIFL 52
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2dk2_A
Length = 103
Score = 38.8 bits (91), Expect = 7e-06
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V NL T + L + F + G++ + +D +AF+
Sbjct: 16 VRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFI 50
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 92
Score = 38.4 bits (90), Expect = 8e-06
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V N++ T +LR FE G V + I + +AFV
Sbjct: 15 VGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFV 49
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif,
G-tract, G-quadruplex, alternative splicing, RNA
binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Length = 139
Score = 39.1 bits (91), Expect = 9e-06
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+ + + L Y+ T +D+ F V ++I R G A V
Sbjct: 37 SEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV-RVHIEIGPDGR-VTGEADVE 92
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif,
RRM, RNP, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: d.58.7.1
Length = 111
Score = 38.3 bits (89), Expect = 2e-05
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 18 VDNLTYRTTPDDLRR---VFERCGEVGDIYIPRDRFTRESR---GFAFVR 61
V L+ R ++ + F + G++ + I S+ A+V
Sbjct: 20 VVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVT 69
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 38.0 bits (88), Expect = 2e-05
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 20 NLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
L + + L V E+CG V + +P + + ++F R
Sbjct: 34 GLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFAR 69
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM
domain, RBD, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 114
Score = 38.0 bits (88), Expect = 2e-05
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRD--RFTRESRGFAFV 60
V L D++ F R G + + + + +G+AF+
Sbjct: 13 VGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFL 57
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic
initiation factor 3 complex, RNA recognition motif; NMR
{Homo sapiens}
Length = 105
Score = 37.4 bits (87), Expect = 3e-05
Identities = 6/44 (13%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 17 KVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+V + + ++F + G++ + + P + +++G+ F+
Sbjct: 25 QVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE--DGKTKGYIFL 66
>1x5p_A Negative elongation factor E; structure genomics, RRM domain,
PARP14, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: d.58.7.1
Length = 97
Score = 36.9 bits (86), Expect = 4e-05
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
Query: 25 TTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
TP LR F G + D+ + R AFV
Sbjct: 25 MTPTLLRGAFSPFGNIIDLSMDPP------RNCAFVT 55
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural
genomics, RRM domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.58.7.1
Length = 104
Score = 36.7 bits (85), Expect = 6e-05
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 6/45 (13%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
V L DL E+ G + + + + A V
Sbjct: 20 VRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEF 58
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA,
spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1
d.58.7.1
Length = 198
Score = 37.6 bits (87), Expect = 6e-05
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
L + N+ + +DL+ +F G V + +F ++ R A +++
Sbjct: 123 LHLSNIPPSVSEEDLKVLFSSNGGV----VKGFKFFQKDRKMALIQM 165
Score = 33.7 bits (77), Expect = 0.001
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 18 VDNL-TYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V NL R TP L +F G+V + I + + A V
Sbjct: 8 VSNLNPERVTPQSLFILFGVYGDVQRVKILFN-----KKENALV 46
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain,
RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 36.3 bits (84), Expect = 6e-05
Identities = 6/52 (11%), Positives = 16/52 (30%)
Query: 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAF 59
P+ + + L++ N+ + L + + G V +
Sbjct: 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTY 61
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide
binding, RNA recognition motif; 1.40A {Homo sapiens}
PDB: 3zzz_A
Length = 130
Score = 36.9 bits (85), Expect = 7e-05
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
V+NL Y T D L ++F + G V I FT+ ++ A ++
Sbjct: 33 VENLFYPVTLDVLHQIFSKFGTVLKIIT----FTKNNQFQALLQ 72
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA
complex, RNA binding protein/RNA complex; NMR {Homo
sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Length = 229
Score = 36.9 bits (85), Expect = 1e-04
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
L + N+ + +DL+ +F G V + +F ++ R A +++
Sbjct: 154 LHLSNIPPSVSEEDLKVLFSSNGGV----VKGFKFFQKDRKMALIQM 196
Score = 36.1 bits (83), Expect = 2e-04
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 4 GRPPPRIEGMVSLKVDNL-TYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
P G L V NL R TP L +F G+V + + + A V+
Sbjct: 25 AIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRV-----KILFNKKENALVQ 78
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM
domain, RBD, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 97
Score = 35.2 bits (81), Expect = 2e-04
Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 8/60 (13%)
Query: 4 GRPPPRIEG---MVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
G P EG + V NL DL+R G V P + R AF+
Sbjct: 7 GPGSPPGEGAPLAADVYVGNLPRDARVSDLKRALRELGSV-----PLRLTWQGPRRRAFL 61
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold,
protein binding, nucleus; 2.04A {Homo sapiens}
Length = 100
Score = 34.7 bits (80), Expect = 2e-04
Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 6/45 (13%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
+ L DL + G + + + + A V
Sbjct: 26 IRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEF 64
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif,
RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
PDB: 2adb_A
Length = 164
Score = 35.5 bits (81), Expect = 3e-04
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ V+NL Y T D L ++F + G V I FT+ ++ A +
Sbjct: 49 IIVENLFYPVTLDVLHQIFSKFGTVLKII----TFTKNNQFQALL 89
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding
protein; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 105
Score = 34.4 bits (79), Expect = 4e-04
Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
P R+ + + L T ++ + G+V ++ + + + AF+
Sbjct: 9 HHGSGVPSRV-----IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFI 57
Query: 61 RL 62
+
Sbjct: 58 EM 59
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 96
Score = 33.4 bits (76), Expect = 7e-04
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 14 VSLKVDNLTYRTTPDDLRR----VFERCGEVGDIYIPRDRFTRESRGFAFVR 61
++V N+ YR + +L++ F R G+V + + + + A V+
Sbjct: 10 ADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPH---TDYQLKAVVQ 58
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif,
RRM, transcription termination, NUC phosphoprotein; NMR
{Saccharomyces cerevisiae}
Length = 96
Score = 33.0 bits (76), Expect = 0.001
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 9/44 (20%)
Query: 18 VDNL-TYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ NL + +DL R+F G + I I F F+
Sbjct: 15 IGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFI 50
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription
termination, RNA processi recognition, RRM; HET: CAF;
1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Length = 97
Score = 33.1 bits (76), Expect = 0.001
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 18 VDNLTYRT-TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ NL + + +DL R+F G + I I F F+
Sbjct: 27 IGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFI 62
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Length = 110
Score = 33.1 bits (76), Expect = 0.001
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 18 VDNL-TYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ NL T D+ +F + G V + +G+AFV
Sbjct: 32 IGNLNTALVKKSDVETIFSKYGRVAGCSVH--------KGYAFV 67
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA
complex, RNA binding protein/RNA complex; NMR {Homo
sapiens} SCOP: d.58.7.1
Length = 119
Score = 33.0 bits (75), Expect = 0.002
Identities = 6/45 (13%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
+ L T ++ + G+V ++ + + + AF+ +
Sbjct: 36 IRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEM 74
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
d.58.7.1
Length = 108
Score = 32.1 bits (73), Expect = 0.003
Identities = 10/49 (20%), Positives = 15/49 (30%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRF 50
PP + V L + DL+ G+V + RD
Sbjct: 4 GSSGGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT 52
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 101
Score = 31.7 bits (72), Expect = 0.004
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
+ L T ++ + G+V +I + + + AF+ L
Sbjct: 20 IRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLEL 58
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein
kinase, SR protein, PRE-mRNA splicing, at binding,
chromosome partition; HET: SEP ANP; 2.90A {Homo
sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Length = 115
Score = 31.7 bits (72), Expect = 0.004
Identities = 10/47 (21%), Positives = 15/47 (31%)
Query: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRF 50
PP + V L + DL+ G+V + RD
Sbjct: 7 RYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT 53
>3ui3_A Immunoglobulin G-binding protein G, virulence-ASS protein D;
ferrodoxin-like fold, virulence associated protein D,
ribonu RNA binding protein; 2.80A {Streptococcus}
Length = 160
Score = 32.0 bits (72), Expect = 0.005
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCG---EVGDIYIPRDRFTRESRGFAFVRLL 63
++ + K Y DDLR+ E G G +Y+ + ++ + + L
Sbjct: 66 LKIEILKKEYGEPYNKAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAINKL 122
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.006
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 9/41 (21%)
Query: 9 RIEGMVSLKVDNLTYRTTPDDLRRVFERCG---EVGDIYIP 46
++ ++ ++ L P + R++F+R +IP
Sbjct: 354 KLTTIIESSLNVLE----PAEYRKMFDRLSVFPP--SAHIP 388
Score = 31.4 bits (70), Expect = 0.012
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGF 57
VDN + D + + + E+ I + +D + R F
Sbjct: 30 VDNFDCKDVQDMPKSILSK-EEIDHIIMSKDAVSGTLRLF 68
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken
structural genomics/proteomics initiative, RSGI, RNA
binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB:
1wi6_A
Length = 88
Score = 30.5 bits (69), Expect = 0.010
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
V NL + ++ + + + + ++ AFV L
Sbjct: 10 VKNLPQDSNCQEVHDLLKDYD-------LKYCYVDRNKRTAFVTL 47
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA
recognition, alternative conformation binding protein;
HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Length = 87
Score = 30.5 bits (69), Expect = 0.010
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPR-----DRFTRESRGFAFV 60
V N+ + T + + F +G + + + FAF+
Sbjct: 11 VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFL 58
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A
{Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Length = 240
Score = 31.3 bits (70), Expect = 0.012
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+L +L +R VF R G++ I S+ FV+
Sbjct: 145 ALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVK 185
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 104
Score = 29.9 bits (68), Expect = 0.019
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERC-GEVGDIYIPRDRFTRESRGFAFVR 61
SL V +LT L F + + D+ T S+G+ FV+
Sbjct: 11 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVK 57
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 124
Score = 30.0 bits (67), Expect = 0.019
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ N Y T D L V G+V R + + A V
Sbjct: 30 IQNPLYPITVDVLYTVCNPVGKV-----QRIVIFKRNGIQAMV 67
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.071
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 18/48 (37%)
Query: 12 GM-VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFA 58
GM + L Y+T+ + V+ R D +++ GF+
Sbjct: 1630 GMGMDL------YKTSKA-AQDVWNRA----------DNHFKDTYGFS 1660
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus,
phosphorylation, ribonucleoprotein, ribosome
biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae}
PDB: 2osr_A
Length = 111
Score = 27.5 bits (61), Expect = 0.16
Identities = 7/57 (12%), Positives = 14/57 (24%), Gaps = 3/57 (5%)
Query: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ + NL + DL+ + TR+ G +
Sbjct: 19 SHMSKLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTF---SSVNTRDFDGTGAL 72
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding
protein, RNA splicing, structural GENO joint center for
structural genomics, JCSG; HET: MSE; 1.80A {Mus
musculus} PDB: 1o0p_A 1opi_A
Length = 105
Score = 27.1 bits (60), Expect = 0.23
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 10 IEGMVSLK--VDNLTYRTTPDDLRRVFERCGEVGDIYIPR--DRFTRESRGFAFVR 61
+ MV + +D+ Y +D+R + G V I IPR D G FV
Sbjct: 10 LMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVE 65
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport,
transport protein; 1.55A {Bacillus subtilis} SCOP:
c.94.1.1
Length = 520
Score = 26.9 bits (60), Expect = 0.42
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 17 KVDNLTYRTTPDDLRRVFE-RCGEVGDIY 44
+D +TY+ PD + + G++ + +
Sbjct: 213 YLDTVTYKVIPDANAAEAQLQAGDI-NFF 240
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509,
center for structural genomic infectious diseases,
csgid, transport prote; 2.43A {Yersinia pestis}
Length = 528
Score = 25.4 bits (56), Expect = 1.2
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 17 KVDNLTYRTTPDDLRRVFERCGEVGDIYIP 46
D L + +D + G++G + IP
Sbjct: 207 DFDKLIFVFLDEDSAFAAAQSGQLGVVRIP 236
>3rqt_A Putative uncharacterized protein; ligand binding component,
ABC-type import system, nickel, SI DI-peptides,
structural genomics; HET: MSE HIS EPE; 1.50A
{Staphylococcus aureus}
Length = 486
Score = 25.7 bits (57), Expect = 1.2
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 17 KVDNLTYRTTPDDLRRVFE-RCGEVGDI 43
K+D++T D RV + D+
Sbjct: 194 KLDHITVTYQEDGNNRVRNLESQKD-DL 220
>3c8w_A Acetoacetate decarboxylase ADC; YP_094708.1, structural GE joint
center for structural genomics, JCSG, protein structu
initiative; HET: LCK CIT; 1.60A {Legionella pneumophila
subsp} SCOP: d.347.1.1
Length = 255
Score = 25.4 bits (55), Expect = 1.3
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD 42
+Y P R + Y T PD L+ + E+ +
Sbjct: 29 TYPAGPYRFINREFFII---AYETDPDLLQAILPPDMELLE 66
>1uqw_A Putative binding protein YLIB; Zn binding protein, transport,
lipoprotein, bacterial targets at IGS-CNRS, france,
BIGS, structural genomics; 2.72A {Escherichia coli}
SCOP: c.94.1.1
Length = 509
Score = 25.0 bits (55), Expect = 1.6
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 17 KVDNLTYRTTPDDLRRVFE-RCGEVGDI 43
K+D++T+R D+ R + GE
Sbjct: 211 KLDSITWRPVADNNTRAAMLQTGEA-QF 237
>3p2c_A Putative glycosyl hydrolase; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-biology; HET: MSE PGE; 1.60A
{Bacteroides ovatus} PDB: 3on6_A*
Length = 463
Score = 24.9 bits (54), Expect = 1.9
Identities = 8/40 (20%), Positives = 10/40 (25%), Gaps = 4/40 (10%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPD----DLRRVFERC 37
RP S V+ R L +F C
Sbjct: 18 KDNRPEISNRLFRSNAVEKEILRVQKLLKNAKLAWMFTNC 57
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics,
joint center for struc genomics, JCSG, protein
structure initiative, PSI-biology; HET: MSE CIT; 0.95A
{Mus musculus} PDB: 2lq5_A
Length = 114
Score = 24.6 bits (54), Expect = 2.0
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 10 IEGMVSLK--VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+ M + + + DD+ + G V IY+ + ++G +V+
Sbjct: 12 LSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDK----NSAQGNVYVK 61
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport,
iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli
K12} PDB: 3mvx_A* 3dp8_A* 3e3k_A* 1zlq_A* 3mvw_A*
3mvy_A* 3mvz_A* 3mw0_A* 3mz9_A* 1uiu_A 1uiv_A 3mzb_A*
3qim_A
Length = 502
Score = 24.6 bits (54), Expect = 2.3
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 17 KVDNLTYRTTPDDLRRVFE-RCGEVGDIYIPRDRF 50
+ +T+ PD R G++ D+ +
Sbjct: 190 AIKKITFNVIPDPTTRAVAFETGDI-DLLYGNEGL 223
>3bgt_A ADC, AAD, probable acetoacetate decarboxylase; lyase, schiff
base; HET: MSE; 2.10A {Chromobacterium violaceum} PDB:
3bh3_A
Length = 246
Score = 24.6 bits (53), Expect = 2.4
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD 42
++ P R + +TYRT P + V ++ +
Sbjct: 19 AFPPGPYRFVNREYM---IITYRTDPAAIEAVLPEPLQMAE 56
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics,
PSI-biology, northeast structural genom consortium,
NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Length = 345
Score = 24.7 bits (53), Expect = 2.4
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 26 TPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+ + L V E+CG V + +P + + ++F R
Sbjct: 33 SRNQLLPVLEKCGLVDALLMPPN------KPYSFAR 62
>3t66_A Nickel ABC transporter (nickel-binding protein); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 2.80A {Bacillus halodurans}
Length = 496
Score = 24.6 bits (54), Expect = 2.4
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 17 KVDNLTYRTTPDDLRRVFE-RCGEVGDI 43
K+D++T+ D R G+ DI
Sbjct: 187 KLDSVTFSFNEDASARSLALESGQA-DI 213
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 112
Score = 24.3 bits (53), Expect = 2.4
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 28 DDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+DLR + G++ + + R G A V
Sbjct: 41 EDLRVECSKFGQIRKLLLFD----RHPDGVASVS 70
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 2.10A
{Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Length = 489
Score = 24.6 bits (53), Expect = 2.6
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 2 SYGRPPPRIEGMVSLKV----DNLTYRTTPDDLRRVFERC 37
RP VS +V D++ T L +FE C
Sbjct: 40 QTNRPEASKRLFVSQEVERQIDHIKQLLTNAKLAWMFENC 79
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA
helicase, acetyltransferase, GCN5 acetyltransferase;
HET: ACO ADP; 2.35A {Escherichia coli K12}
Length = 671
Score = 24.2 bits (52), Expect = 3.2
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFE 35
P + L YRT+P DLRR+ +
Sbjct: 363 PETPLKVYQLLSGA-HYRTSPLDLRRMMD 390
>3tpa_A Heme-binding protein A; glutathione binding protein, SBP; 2.00A
{Haemophilus parasuis 29755}
Length = 521
Score = 24.2 bits (53), Expect = 3.2
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 17 KVDNLTYRTTPDDLRRVFE-RCGEVGDIY 44
++ L + TPD R + + GE D+
Sbjct: 217 DIERLIFSITPDAGTRYAKLKAGEC-DVI 244
>3m8u_A Heme-binding protein A; glutathione binding protein, ABC-type
transport system, PERI component, transport protein;
HET: GDS; 1.85A {Haemophilus parasuis}
Length = 522
Score = 24.2 bits (53), Expect = 3.2
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 17 KVDNLTYRTTPDDLRRVFE-RCGEVGDIY 44
+D L + PD R + + G D+
Sbjct: 212 DIDRLIFEIVPDATARYAKLQAGAC-DLI 239
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel,
substrate channeling; HET: NAD; 1.70A {Pseudomonas SP}
SCOP: a.5.7.1 c.1.10.5
Length = 345
Score = 24.2 bits (53), Expect = 3.3
Identities = 4/26 (15%), Positives = 8/26 (30%), Gaps = 2/26 (7%)
Query: 23 YRTTPDDLRRVFERCGEVG--DIYIP 46
+ + L + G IY+
Sbjct: 144 HMIPAEKLAEQGKLMESYGATCIYMA 169
>1dpe_A Dipeptide-binding protein; peptide transport, periplasmic,
chemotaxis binding proteins for active transport; 2.00A
{Escherichia coli K12} SCOP: c.94.1.1 PDB: 1dpp_A
Length = 507
Score = 24.2 bits (53), Expect = 3.5
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 17 KVDNLTYRTTPDDLRRVFE-RCGEVGDIY 44
++D L + TPD R + + E +
Sbjct: 210 QIDTLVFSITPDASVRYAKLQKNEC-QVM 237
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 24.2 bits (53), Expect = 3.5
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 20 NLTY----RTTPDD----LRRVFERCGEVGDIY 44
N + RT+ + + +++ GDIY
Sbjct: 108 NSSNDDYIRTSEERHYKASQAIWQAMVANGDIY 140
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 24.1 bits (53), Expect = 3.7
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 20 NLTY----RTTPDD----LRRVFERCGEVGDIY 44
N+++ RT+ D + +++R + GDIY
Sbjct: 95 NISFDRFIRTSDADHYEASKAIWKRMADAGDIY 127
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 24.1 bits (53), Expect = 4.3
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 20 NLTY----RTTPDD----LRRVFERCGEVGDIY 44
+ Y RTT +++VFE C + GDIY
Sbjct: 88 KIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIY 120
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 23.9 bits (52), Expect = 4.5
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 7 PPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRE 53
P R+ G L+ + + +R +E + + + E
Sbjct: 437 PCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLAAEEGKAE 483
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 23.7 bits (52), Expect = 4.6
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 20 NLTY----RTTPDD----LRRVFERCGEVGDIY 44
+ Y RTT + ++ V ++ E GDIY
Sbjct: 86 GIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIY 118
>2y9y_B IOC3, ISWI one complex protein 3; transcription, nuclear protein
complex, chromatin remodeling nucleosome remodeling;
3.25A {Saccharomyces cerevisiae} PDB: 2y9z_B
Length = 624
Score = 23.7 bits (50), Expect = 6.3
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 36 RCGEVGDIYIPR 47
R +GD Y+PR
Sbjct: 417 RVPHIGDFYMPR 428
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 23.4 bits (51), Expect = 6.7
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 20 NLTY----RTTPDD----LRRVFERCGEVGDIY 44
N RTT ++ ++++ GDIY
Sbjct: 109 NYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIY 141
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1;
transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 23.2 bits (50), Expect = 7.0
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 23 YRTTPDDLRRVFERCG 38
YR TP +L++ F+
Sbjct: 396 YRLTPTELKQKFKDMN 411
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.148 0.457
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,091,334
Number of extensions: 52179
Number of successful extensions: 565
Number of sequences better than 10.0: 1
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 224
Length of query: 65
Length of database: 6,701,793
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,696,637
Effective search space: 165202473
Effective search space used: 165202473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.4 bits)