RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7053
(65 letters)
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 47.2 bits (112), Expect = 1e-09
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
SL V +L T L F G + I + RD TR S G+A+V
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYV 47
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 46.1 bits (109), Expect = 4e-09
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 8 PRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDR-FTRESRGFAFVR 61
P+ + + V N+ ++ ++R +F GE+ + +P+ T RGF FV
Sbjct: 3 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVD 57
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 41.9 bits (98), Expect = 1e-07
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
V L+ T + +R F GEV I +P D T + RGF F+
Sbjct: 4 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 47
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 41.9 bits (98), Expect = 1e-07
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+L V NL T D L +F + G + I RD+ T RG AFVR
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVR 54
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 41.1 bits (96), Expect = 3e-07
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 10 IEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
++ L V L ++TT DL+ F GEV + + +D T S+GF FVR
Sbjct: 5 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVR 56
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 40.3 bits (94), Expect = 4e-07
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+ L+++TT + LR F + GEV + + RD T+ SRGF FV
Sbjct: 5 IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 48
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 40.0 bits (93), Expect = 6e-07
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
S G+P P I +KV N+ + + D++ F + + G A V
Sbjct: 3 SSGKPGPTI-----IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMV 56
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 39.6 bits (92), Expect = 8e-07
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ L++ TT DL+ F + GEV D + D T SRGF FV
Sbjct: 4 IGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 46
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 39.3 bits (91), Expect = 2e-06
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
R E L + L++ TT + LR +E+ G++ D + RD ++ SRGF FV
Sbjct: 12 RKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFV 67
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 40.0 bits (92), Expect = 2e-06
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAF 59
+ L++ TT + LR FE+ G + D + RD T+ SRGF F
Sbjct: 11 IGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 52
Score = 39.6 bits (91), Expect = 4e-06
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ V + T LR FE+ G++ I I DR + + RGFAFV
Sbjct: 100 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 144
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 38.1 bits (88), Expect = 4e-06
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V L T +L ++F + G + I D+ T SRG F+
Sbjct: 11 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 53
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 38.5 bits (89), Expect = 4e-06
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
++ L R P DL F G+V D+ I DR +R S+G A+V
Sbjct: 20 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYV 65
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 37.3 bits (86), Expect = 8e-06
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+ L++ TT + LR FE+ G + D + RD T+ SRGF FV
Sbjct: 11 IGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 54
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 35.7 bits (82), Expect = 4e-05
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+L V NL++ TT + + +F + G++ I + D+ + + GF FV
Sbjct: 9 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFV 54
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 35.4 bits (81), Expect = 4e-05
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ L D ++ + G + + +D T S+G+AF
Sbjct: 6 IGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 48
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 35.0 bits (80), Expect = 8e-05
Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
+++ + + E+ GEV ++ + + G +V+
Sbjct: 29 DVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKF 75
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 34.6 bits (79), Expect = 9e-05
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
P R + +++V NL+ T DL+ +F G + IY+ +D+ T +S+GFAF+
Sbjct: 1 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 55
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 34.9 bits (80), Expect = 9e-05
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRF 50
++ + T +R+ F G++ +I + ++
Sbjct: 20 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG 55
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 35.0 bits (80), Expect = 1e-04
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 5 RPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
R PP E L + NL Y+ T +++ +F + G + I + TR G A+V
Sbjct: 1 RLPP--EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETR---GTAYVV 52
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 34.3 bits (78), Expect = 1e-04
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIY-IPRDRFTRESRGFAFV 60
+ NL L F G + I RD T S+G+AF+
Sbjct: 3 IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFI 46
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 33.8 bits (77), Expect = 2e-04
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRES 54
+L V+ L T +L +F G + I RD T S
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYS 43
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 34.2 bits (78), Expect = 2e-04
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 6 PPPR---IEGMVSLK--VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
P + MV + +D+ Y +D+R + G V I IPR E G +
Sbjct: 2 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKI 61
Query: 61 R 61
Sbjct: 62 F 62
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 33.5 bits (76), Expect = 3e-04
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
L V L+ TT DLR VF + G + D+ I D+ +R SRGFAFV
Sbjct: 11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 56
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 33.5 bits (76), Expect = 3e-04
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGD---IYIPRDRFTRESRGFAFV 60
+ NL + TT + L+ VF + G + S GF FV
Sbjct: 3 IKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFV 48
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 33.8 bits (77), Expect = 3e-04
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
V+NL Y T D L ++F + G V I FT+ ++ A ++
Sbjct: 12 VENLFYPVTLDVLHQIFSKFGTVLKIIT----FTKNNQFQALLQ 51
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 32.6 bits (74), Expect = 4e-04
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
L V NL + + D++ +F G + + + S G A V
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHY-DRSGRSLGTADV 46
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 32.7 bits (74), Expect = 6e-04
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
++ V L + + L +F + G V + ++P+DR T + +G+ FV
Sbjct: 11 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFV 56
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 32.0 bits (72), Expect = 9e-04
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
P +EG + L V ++ D+++ F GE+ +I++ DR T S+G+A V
Sbjct: 1 PQRSVEGWI-LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALV 54
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 32.1 bits (73), Expect = 0.001
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 2 SYGRPPPRIEGMVSLKVDNL-TYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
S G+ PR + + NL T D+ +F + G++ + +GFAFV
Sbjct: 5 SSGKTDPRSMN-SRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH--------KGFAFV 55
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 32.0 bits (72), Expect = 0.001
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPR-----DRFTRESRGFAFV 60
V N+ + T + + F +G + + + FAF+
Sbjct: 6 VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFL 53
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 31.4 bits (71), Expect = 0.002
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 10 IEGMVS---LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
I+ M + D L +DLR + G++ + + G A V
Sbjct: 13 IKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHP----DGVASVS 63
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 31.2 bits (70), Expect = 0.002
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V L L F G++ DI IP D T + RGFAFV
Sbjct: 10 VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFV 52
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 30.9 bits (69), Expect = 0.003
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESR 55
++ V L T DDL F++CG V
Sbjct: 10 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYL 50
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 30.1 bits (67), Expect = 0.005
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+L V+ L T ++ R +F GE+ + RD+ T +S G+ FV
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV 49
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 29.7 bits (66), Expect = 0.009
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V L Y TT LR+ FE G++ + + DR T +SRG+ FV
Sbjct: 15 VGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 57
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 29.3 bits (65), Expect = 0.014
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
V NL+Y ++ +DL ++F G + +++ P D T++ +GFAFV
Sbjct: 13 VRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFV 55
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 28.9 bits (64), Expect = 0.015
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 20 NLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
L + + L V E+CG V + +P ++ ++F R
Sbjct: 27 GLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARY 63
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 29.0 bits (64), Expect = 0.017
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 11 EGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESR 55
G + +L +T +DL +F GE+ I R
Sbjct: 9 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIIL 53
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 28.4 bits (63), Expect = 0.021
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRF 50
V NL T +++R++FE+ G+ G+++I +D+
Sbjct: 13 VGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG 45
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 28.5 bits (63), Expect = 0.022
Identities = 11/54 (20%), Positives = 20/54 (37%)
Query: 6 PPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAF 59
++ +L NL++ T D+L+ VFE E+ + F
Sbjct: 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKS 62
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 28.1 bits (62), Expect = 0.037
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 15 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
+ V T T D+LR F + G+V D+ + R FAFV
Sbjct: 7 GVFVGRCTGDMTEDELREFFSQYGDVMDV-----FIPKPFRAFAFV 47
>d1jyaa_ d.198.1.1 (A:) YopE chaperone SycE {Yersinia pestis
[TaxId: 632]}
Length = 117
Score = 26.7 bits (59), Expect = 0.13
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 7 PPRIEGMVSLKVDNLTYRTTP 27
P IE ++ +KV T
Sbjct: 19 PDTIEPVIGVKVGEFACHITE 39
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 25.4 bits (55), Expect = 0.30
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 16 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFV 60
L V NL T+ + + + F ++ R +AFV
Sbjct: 11 LYVRNLMLSTSEEMIEKEFNNIKPG------AVERVKKIRDYAFV 49
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 25.4 bits (55), Expect = 0.36
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 15 SLKVDNLTYRTTPDDLRR-VFERCGEVGDIYIPRDRFTRESRGFAFVR 61
++ ++NL + D+L++ + G I + + RG AFV
Sbjct: 5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVI 52
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 25.1 bits (54), Expect = 0.40
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVR 61
+ L TT DL ++ + G++ D+ T + +G+ FV
Sbjct: 3 IRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVD 46
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 24.8 bits (53), Expect = 0.57
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 2 SYGRPPPRIEGMVS--LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRF 50
S G + VS + V L DL E+ G + + + +
Sbjct: 2 SSGSSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR 52
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 24.7 bits (53), Expect = 0.62
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 2 SYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRF 50
S G PP R + V L + DL+ G+V + +D
Sbjct: 5 SSGGPPTRRSDF-RVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGM 52
>d3c8wa1 d.347.1.1 (A:5-254) Acetoacetate decarboxylase
{Legionella pneumophila [TaxId: 446]}
Length = 250
Score = 24.5 bits (53), Expect = 0.89
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGD 42
+Y P R + Y T PD L+ + E+ +
Sbjct: 23 NTYPAGPYRFINREFFII---AYETDPDLLQAILPPDMELLE 61
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 23.8 bits (51), Expect = 1.1
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
Query: 23 YRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRL 62
TP LR F G + D+ + R AFV
Sbjct: 13 EDMTPTLLRGAFSPFGNIIDLSMDPP------RNCAFVTY 46
>d3cmba1 d.347.1.1 (A:1-264) Acetoacetate decarboxylase
{Methanoculleus marisnigri [TaxId: 2198]}
Length = 264
Score = 23.4 bits (50), Expect = 2.8
Identities = 4/34 (11%), Positives = 10/34 (29%), Gaps = 3/34 (8%)
Query: 1 MSYGRPPPRIEGMVSLKVDNLTYRTTPDDLRRVF 34
+ + +L + ++ T D L
Sbjct: 19 GKFDPETLVTQKATALSL---SFETERDLLENYI 49
>d1x6va2 c.26.1.5 (A:390-624) ATP sulfurylase catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 235
Score = 22.6 bits (48), Expect = 4.9
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 22 TYRTTPDDLRRVFERCG 38
YR TP +L++ F+
Sbjct: 6 QYRLTPTELKQKFKDMN 22
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 22.0 bits (46), Expect = 6.0
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 25 TTPDDLRRVFERCGEVGDIYIPRDRFT 51
L ++ E G + + I
Sbjct: 21 NLRYQLLQLVEPFGVISNHLILNKINE 47
>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId:
8010]}
Length = 107
Score = 22.2 bits (47), Expect = 6.1
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 26 TPDDLRRVFERCGEVGDIYIPRDRFTR 52
+ DD+++ F + +I D
Sbjct: 38 SLDDVKKAFYVIDQDKSGFIEEDELKL 64
>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 443
Score = 22.0 bits (47), Expect = 8.7
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 5 RPPPRIEGMVSLKV----DNLTYRTTPDDLRRVFERC 37
RP VS +V D++ T L +FE C
Sbjct: 5 RPEASKRLFVSQEVERQIDHIKQLLTNAKLAWMFENC 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.148 0.457
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 264,192
Number of extensions: 10095
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 59
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)