BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7055
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SKO|B Chain B, Mp1-P14 Complex
Length = 130
Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 62/95 (65%), Positives = 77/95 (81%)
Query: 4 EGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVA 63
EG+LLAYSG+ D D V AAI SNIW+A+++NG AF EDSL+ +LM+C G+VAIT+VA
Sbjct: 34 EGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVA 93
Query: 64 NVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 98
N+LLC+YAKE V FGML+AKA+AL YLE PL QV
Sbjct: 94 NLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 128
>pdb|1VET|B Chain B, Crystal Structure Of P14MP1 AT 1.9 A RESOLUTION
Length = 125
Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 62/95 (65%), Positives = 77/95 (81%)
Query: 4 EGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVA 63
EG+LLAYSG+ D D V AAI SNIW+A+++NG AF EDSL+ +LM+C G+VAIT+VA
Sbjct: 28 EGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVA 87
Query: 64 NVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 98
N+LLC+YAKE V FGML+AKA+AL YLE PL QV
Sbjct: 88 NLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 122
>pdb|2ZL1|B Chain B, Mp1-P14 Scaffolding Complex
Length = 131
Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 62/95 (65%), Positives = 77/95 (81%)
Query: 4 EGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVA 63
EG+LLAYSG+ D D V AAI SNIW+A+++NG AF EDSL+ +LM+C G+VAIT+VA
Sbjct: 34 EGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVA 93
Query: 64 NVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 98
N+LLC+YAKE V FGML+AKA+AL YLE PL QV
Sbjct: 94 NLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 128
>pdb|1SZV|A Chain A, Structure Of The Adaptor Protein P14 Reveals A Profilin-
Like Fold With Novel Function
Length = 130
Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 62/95 (65%), Positives = 77/95 (81%)
Query: 4 EGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVA 63
EG+LLAYSG+ D D V AAI SNIW+A+++NG AF EDSL+ +LM+C G+VAIT+VA
Sbjct: 33 EGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVA 92
Query: 64 NVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 98
N+LLC+YAKE V FGML+AKA+AL YLE PL QV
Sbjct: 93 NLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 127
>pdb|3CPT|B Chain B, Mp1-P14 Scaffolding Complex
Length = 131
Score = 134 bits (338), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 62/95 (65%), Positives = 76/95 (80%)
Query: 4 EGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVA 63
EG+LLAYSG+ D D V AAI SNIW+A ++NG AF EDSL+ +LM+C G+VAIT+VA
Sbjct: 34 EGSLLAYSGYGDTDARVTAAIASNIWAAADRNGNQAFNEDSLKFILMDCMEGRVAITRVA 93
Query: 64 NVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 98
N+LLC+YAKE V FGML+AKA+AL YLE PL QV
Sbjct: 94 NLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 128
>pdb|1VEU|B Chain B, Crystal Structure Of The P14MP1 COMPLEX AT 2.15 A
Resolution
Length = 126
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 76/98 (77%)
Query: 1 MSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAIT 60
++ EG+LLAYSG+ D D V AAI SNIW+A+++NG AF EDSL+ +L +C G+VAIT
Sbjct: 26 LNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILXDCXEGRVAIT 85
Query: 61 QVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 98
+VAN+LLC YAKE V FG L+AKA+AL YLE PL QV
Sbjct: 86 RVANLLLCXYAKETVGFGXLKAKAQALVQYLEEPLTQV 123
>pdb|3KH2|A Chain A, Crystal Structure Of The P1 Bacteriophage Doc Toxin (F68s)
In Complex With The Phd Antitoxin (L17mV39A). NORTHEAST
STRUCTURAL GENOMICS Targets Er385-Er386
pdb|3KH2|B Chain B, Crystal Structure Of The P1 Bacteriophage Doc Toxin (F68s)
In Complex With The Phd Antitoxin (L17mV39A). NORTHEAST
STRUCTURAL GENOMICS Targets Er385-Er386
pdb|3KH2|C Chain C, Crystal Structure Of The P1 Bacteriophage Doc Toxin (F68s)
In Complex With The Phd Antitoxin (L17mV39A). NORTHEAST
STRUCTURAL GENOMICS Targets Er385-Er386
pdb|3KH2|D Chain D, Crystal Structure Of The P1 Bacteriophage Doc Toxin (F68s)
In Complex With The Phd Antitoxin (L17mV39A). NORTHEAST
STRUCTURAL GENOMICS Targets Er385-Er386
Length = 134
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 12 GHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLY 70
GH ND A+ S + +NG F L + + + G+++++ VA+ L LY
Sbjct: 65 GHISNDANKRTALNSALL-FLRRNGVQVFDSPELADLTVGAATGEISVSSVADTLRRLY 122
>pdb|2XE0|A Chain A, Molecular Basis Of Engineered Meganuclease Targeting Of
The Endogenous Human Rag1 Locus
Length = 152
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 7 LLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAF 40
LL +G D DG++IA I N S F+ R F
Sbjct: 9 LLYLAGFVDGDGSIIAQINPNASSKFKHRLRLTF 42
>pdb|3MXB|A Chain A, Molecular Basis Of Engineered Meganuclease Targeting Of
The Endogenous Human Rag1 Locus
pdb|3MXB|R Chain R, Molecular Basis Of Engineered Meganuclease Targeting Of
The Endogenous Human Rag1 Locus
Length = 175
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 7 LLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAF 40
LL +G D DG++IA I N S F+ R F
Sbjct: 11 LLYLAGFVDGDGSIIAQINPNQSSKFKHRLRLTF 44
>pdb|3K33|A Chain A, Crystal Structure Of The Phd-Doc Complex
Length = 126
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 12 GHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLY 70
GH ND A+ S + +NG F L + + + G+++++ VA+ L LY
Sbjct: 65 GHIFNDANKRTALNSALLF-LRRNGVQVFDSPELADLTVGAATGEISVSSVADTLRRLY 122
>pdb|2V8F|A Chain A, Mouse Profilin Iia In Complex With A Double Repeat From
The Fh1 Domain Of Mdia1
pdb|2V8F|B Chain B, Mouse Profilin Iia In Complex With A Double Repeat From
The Fh1 Domain Of Mdia1
Length = 140
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 57 VAITQVANVLLCLYAKENVCFGMLRAKAEALATYLE 92
VA+ + VL+ + KE V G L KA ++A YL
Sbjct: 101 VAVGRAGRVLVFVMGKEGVHGGGLNKKAYSMAKYLR 136
>pdb|2VK3|A Chain A, Crystal Structure Of Rat Profilin 2a
Length = 142
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 57 VAITQVANVLLCLYAKENVCFGMLRAKAEALATYLE 92
VA+ + VL+ + KE V G L KA ++A YL
Sbjct: 103 VAVGRAGRVLVFVMGKEGVHGGGLNKKAYSMAKYLR 138
>pdb|2V8C|A Chain A, Mouse Profilin Iia In Complex With The Proline-Rich Domain
Of Vasp
Length = 140
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 57 VAITQVANVLLCLYAKENVCFGMLRAKAEALATYLE 92
VA+ + VL+ + KE V G L KA ++A YL
Sbjct: 101 VAVGRAGRVLVFVMGKEGVHGGGLNKKAYSMAKYLR 136
>pdb|3MX9|A Chain A, Molecular Basis Of Engineered Meganuclease Targeting Of
The Endogenous Human Rag1 Locus
pdb|3MXA|A Chain A, Molecular Basis Of Engineered Meganuclease Targeting Of
The Endogenous Human Rag1 Locus
Length = 362
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 7 LLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAF 40
LL +G D DG++IA I N S F+ R F
Sbjct: 11 LLYLAGFVDGDGSIIAQINPNQSSKFKHRLRLTF 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.128 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,713,387
Number of Sequences: 62578
Number of extensions: 85249
Number of successful extensions: 209
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 18
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)