Query psy7055
Match_columns 102
No_of_seqs 62 out of 64
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 16:58:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4107|consensus 100.0 6.7E-44 1.4E-48 248.5 5.0 101 1-101 25-125 (125)
2 COG2018 Uncharacterized distan 99.4 7.8E-13 1.7E-17 93.5 9.0 92 2-94 26-118 (119)
3 PF03259 Robl_LC7: Roadblock/L 99.1 9.8E-11 2.1E-15 75.1 5.1 70 1-71 21-91 (91)
4 PF08923 MAPKK1_Int: Mitogen-a 97.2 0.0042 9E-08 43.7 8.6 89 2-92 24-113 (119)
5 PF00235 Profilin: Profilin; 89.1 2 4.4E-05 28.9 6.1 86 2-91 23-121 (121)
6 KOG1755|consensus 85.7 6.3 0.00014 28.4 7.2 62 29-93 54-125 (128)
7 PF01217 Clat_adaptor_s: Clath 70.5 32 0.00069 23.7 9.6 90 1-97 8-97 (141)
8 cd00148 PROF Profilin binds ac 69.7 34 0.00073 23.6 7.8 51 43-93 65-124 (127)
9 COG4831 Roadblock/LC7 domain [ 67.0 5 0.00011 28.0 2.2 16 1-16 20-35 (109)
10 COG3908 Uncharacterized protei 55.1 23 0.00051 23.3 3.6 37 46-82 11-47 (77)
11 smart00392 PROF Profilin. Bind 52.6 41 0.00089 23.2 4.8 52 42-93 66-126 (129)
12 PF09941 DUF2173: Uncharacteri 44.7 40 0.00087 23.5 3.7 32 1-35 18-49 (108)
13 PF11869 DUF3389: Protein of u 42.0 19 0.00041 23.8 1.6 15 48-62 1-15 (75)
14 PF08845 SymE_toxin: Toxin Sym 34.2 39 0.00085 20.8 2.1 16 46-61 42-57 (57)
15 TIGR02578 cas_TM1811_Csm1 CRIS 29.5 64 0.0014 28.5 3.4 20 17-36 204-223 (648)
16 PF03164 Mon1: Trafficking pro 28.7 3.4E+02 0.0074 22.5 9.0 81 2-91 18-99 (415)
17 PF03959 FSH1: Serine hydrolas 28.5 48 0.001 24.3 2.1 28 65-93 6-33 (212)
18 PF02392 Ycf4: Ycf4; InterPro 28.2 1E+02 0.0022 23.3 3.9 53 43-96 120-179 (180)
19 PRK08577 hypothetical protein; 26.5 2.2E+02 0.0047 19.5 5.3 48 41-90 28-80 (136)
20 KOG4826|consensus 25.9 25 0.00053 27.7 0.2 50 17-71 86-135 (229)
21 PF11250 DUF3049: Protein of u 24.1 91 0.002 19.2 2.5 13 51-63 23-35 (56)
22 KOG1486|consensus 22.7 53 0.0012 27.1 1.6 23 75-97 25-47 (364)
23 PF08331 DUF1730: Domain of un 22.4 76 0.0017 20.0 2.0 20 79-98 51-70 (78)
24 TIGR01195 oadG_fam sodium pump 20.6 89 0.0019 20.4 2.0 16 15-30 61-76 (82)
No 1
>KOG4107|consensus
Probab=100.00 E-value=6.7e-44 Score=248.46 Aligned_cols=101 Identities=56% Similarity=0.930 Sum_probs=99.6
Q ss_pred CCCcccEEEeecCCCCchhHHHHHHHHHHHHHHhcCccccccccceeeeeeecCceEEeeeecceeeeeeeecCccccch
Q psy7055 1 MSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFGML 80 (102)
Q Consensus 1 ~~~eG~LlA~s~~~d~~a~v~AAiasniW~ay~r~g~~~~~~~~L~~~lie~e~Gri~i~~Va~~LLcl~a~~~v~~GlL 80 (102)
||+||+||||+|++|+|+||+|||+||||.+|+|+|..+|++|+|++++++||+|+++||+|++||||+|++++|++||+
T Consensus 25 ln~EG~LLAYsGygdkdarvtaAiasniWAAyer~gn~af~e~~Lkf~lldcenG~vaiT~VA~~LLc~yAk~tvglGml 104 (125)
T KOG4107|consen 25 LNKEGLLLAYSGYGDKDARVTAAIASNIWAAYERRGNQAFNEDDLKFTLLDCENGVVAITLVARMLLCVYAKKTVGLGML 104 (125)
T ss_pred EcCCCcEEEecccCcchhHHHHHHHHHHHHHHHHhccccccccCceeeeeeecCCeeeHHHHHHHHHHHhhhcccchHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcccccC
Q psy7055 81 RAKAEALATYLEAPLKQVVNT 101 (102)
Q Consensus 81 k~K~~al~~~Le~pL~~i~~~ 101 (102)
|+|+++|+.|||+||.||++|
T Consensus 105 kaKa~tLa~YLE~Pl~qisas 125 (125)
T KOG4107|consen 105 KAKAHTLAAYLEQPLLQISAS 125 (125)
T ss_pred HHHHHHHHHHHHhHHHHhcCC
Confidence 999999999999999999976
No 2
>COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]
Probab=99.44 E-value=7.8e-13 Score=93.54 Aligned_cols=92 Identities=20% Similarity=0.335 Sum_probs=85.1
Q ss_pred CCcccEEEeecCCCCchhHHHHHHHHHHHHHHhcCccccccccceeeeeeecCceEEeeeecc-eeeeeeeecCccccch
Q psy7055 2 SYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVAN-VLLCLYAKENVCFGML 80 (102)
Q Consensus 2 ~~eG~LlA~s~~~d~~a~v~AAiasniW~ay~r~g~~~~~~~~L~~~lie~e~Gri~i~~Va~-~LLcl~a~~~v~~GlL 80 (102)
+.||.+++..-+++.|++++||++|.+.++-+|... .|.-++++|++|+.++|+|.+.+++. .+|.+.+.+.+++|++
T Consensus 26 s~DGL~ia~~~p~~~d~e~vaA~~a~~~g~~er~~~-~l~~g~leqi~I~g~~g~i~l~~~g~~~il~~~a~~~~nLGli 104 (119)
T COG2018 26 SKDGLPIAAELPGNVDAEIVAAMAATALGLAERAAD-ELGGGELEQIMIEGKKGKILLYDAGDDAILVVLADEGTNLGLI 104 (119)
T ss_pred ccCCceEeecCCCcccHHHHHHHHHHHHHHhHHHHH-HhCCCCceEEEEeccccEEEEEEcCCceEEEEEcCCCCcchhh
Confidence 479999999999999999999999999999998764 46778999999999999999999995 9999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy7055 81 RAKAEALATYLEAP 94 (102)
Q Consensus 81 k~K~~al~~~Le~p 94 (102)
|..++..++.++.-
T Consensus 105 ~~e~k~aa~~i~~~ 118 (119)
T COG2018 105 RMEMKRAAEKIAAL 118 (119)
T ss_pred hhHHHHHHHHHhhc
Confidence 99999999988753
No 3
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=99.13 E-value=9.8e-11 Score=75.07 Aligned_cols=70 Identities=31% Similarity=0.484 Sum_probs=63.0
Q ss_pred CCCcccEEEeecCCCCchhHHHHHHHHHHHHHHhcCccccccccceeeeeeecCceEEeeeecc-eeeeeee
Q psy7055 1 MSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVAN-VLLCLYA 71 (102)
Q Consensus 1 ~~~eG~LlA~s~~~d~~a~v~AAiasniW~ay~r~g~~~~~~~~L~~~lie~e~Gri~i~~Va~-~LLcl~a 71 (102)
+|+||.++++...++.+++.+||+++.+|...++.++.. ..++++++++++++|++.|+++++ ++||+++
T Consensus 21 ~~~dG~~i~~~~~~~~~~~~~aa~~a~~~~~~~~~~~~l-~~~~~~~v~i~~~~~~i~i~~~~~~~~L~v~~ 91 (91)
T PF03259_consen 21 VDKDGLVIASSGIDDDDAEKLAAMAASLLAAAEKLAKEL-GEGELEQVRIETEKGEIIITPVGDFYLLVVLA 91 (91)
T ss_dssp EETTSEEEEETSSSHHHHHHHHHHHHHHHHHHHHHHHHH-TTSSEEEEEEEESSEEEEEEECSTCEEEEEEE
T ss_pred EcCCCCEEEEecCCcccHHHHHHHHHHHHHHHHHHHHHh-CCCCcEEEEEEECCCEEEEEEcCCCEEEEEEC
Confidence 478999999966677899999999999999999988765 488999999999999999999999 9999874
No 4
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=97.19 E-value=0.0042 Score=43.72 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=67.6
Q ss_pred CCcccEEEeecCCCC-chhHHHHHHHHHHHHHHhcCccccccccceeeeeeecCceEEeeeecceeeeeeeecCccccch
Q psy7055 2 SYEGTLLAYSGHKDN-DGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFGML 80 (102)
Q Consensus 2 ~~eG~LlA~s~~~d~-~a~v~AAiasniW~ay~r~g~~~~~~~~L~~~lie~e~Gri~i~~Va~~LLcl~a~~~v~~GlL 80 (102)
|+||..|+.++.++. +.+.-+++.+. |.....++. -+.-++.++++.-+++..++......+.+-++|+++.+.|++
T Consensus 24 DrDGvpi~~v~~~~~~~~~~~~~~~~t-f~~a~~Q~~-KL~lG~nk~ii~~Y~~~qvv~~~~~pl~it~ias~~aN~G~i 101 (119)
T PF08923_consen 24 DRDGVPIAKVSSDSAPESAMRPSLLST-FAMAIDQAS-KLGLGKNKSIIAYYDSYQVVQFNKLPLYITFIASSNANTGLI 101 (119)
T ss_dssp ETTS-EEEEEE-TTS-GGGGSHHHHCC-HHHHHHHHT-TSSS-SEEEEEEEESSEEEEEEEETTEEEEEEEETTS-HHHH
T ss_pred CCCCcEEEEecCCCCcchhhhhHHHHH-HHHHhhccc-ccCCCCceEEEEEeCCEEEEEEeCCCeEEEEEecCCCCHHHH
Confidence 689999999987764 45555677544 665555543 345678999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhh
Q psy7055 81 RAKAEALATYLE 92 (102)
Q Consensus 81 k~K~~al~~~Le 92 (102)
+.=-+.|..+|+
T Consensus 102 l~l~~~L~~~l~ 113 (119)
T PF08923_consen 102 LSLEEELAPILN 113 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH
Confidence 887777777763
No 5
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=89.12 E-value=2 Score=28.89 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=50.0
Q ss_pred CCcccEEEeecCC-CCchhHHHHHH---HHHHHHHHhcCccccccccceeeeeeec---------CceEEeeeecceeee
Q psy7055 2 SYEGTLLAYSGHK-DNDGTVIAAIT---SNIWSAFEKNGRSAFKEDSLQMVLMECS---------NGKVAITQVANVLLC 68 (102)
Q Consensus 2 ~~eG~LlA~s~~~-d~~a~v~AAia---sniW~ay~r~g~~~~~~~~L~~~lie~e---------~Gri~i~~Va~~LLc 68 (102)
+.||.+.|+++.- .-...=+..|+ .+- .....+| +.-+.-+++++-.+ .+-++|.+-...++.
T Consensus 23 ~~dG~vwA~s~~f~~~~~~E~~~i~~~f~~~-~~~~~~g---i~l~G~kY~~~~~d~~~i~~k~~~~G~~i~kt~~~ivI 98 (121)
T PF00235_consen 23 GSDGSVWASSPGFSNISPEEAKAIIKAFNNP-SKFPSNG---ITLGGKKYIVLRADDNSIYGKKGKGGIIIVKTKQAIVI 98 (121)
T ss_dssp ETTSSEEEEETTGGGCSHHHHHHHHHHHHSS-SHHHHH----EEETTEEEEEEEEETTEEEEEETTEEEEEEECSSEEEE
T ss_pred cCCCCEEEecCCCCCCCHHHHHHHHHHhcCc-hhcccCC---eEEcCcEeEEEecCCceEEeeCCCCcEEEEECCCEEEE
Confidence 4789999988764 32222222221 111 1122222 22344455555444 344666666665555
Q ss_pred eeeecCccccchHHHHHHHHHHh
Q psy7055 69 LYAKENVCFGMLRAKAEALATYL 91 (102)
Q Consensus 69 l~a~~~v~~GlLk~K~~al~~~L 91 (102)
-+.+++..-|.....++.|++||
T Consensus 99 g~y~~~~~~~~~~~~v~~lA~yL 121 (121)
T PF00235_consen 99 GMYDESIQPGNCNKAVEKLADYL 121 (121)
T ss_dssp EEEETTSTHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHhhC
Confidence 55666799999999999999998
No 6
>KOG1755|consensus
Probab=85.65 E-value=6.3 Score=28.37 Aligned_cols=62 Identities=23% Similarity=0.285 Sum_probs=46.2
Q ss_pred HHHHHhcCccccccccceeeeeeecC----------ceEEeeeecceeeeeeeecCccccchHHHHHHHHHHhhh
Q psy7055 29 WSAFEKNGRSAFKEDSLQMVLMECSN----------GKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEA 93 (102)
Q Consensus 29 W~ay~r~g~~~~~~~~L~~~lie~e~----------Gri~i~~Va~~LLcl~a~~~v~~GlLk~K~~al~~~Le~ 93 (102)
|...-.+|.. -...++++++.|. |-+.|+.-...|+..+-++.+.-|..+.+.+.|++||.+
T Consensus 54 ~~~~~~~Gl~---L~Gqkylv~~ge~~~~~~gk~~~~gv~i~kT~~~li~~~y~e~v~~g~~~k~ve~LadYL~~ 125 (128)
T KOG1755|consen 54 PGGLAGTGLT---LGGQKYLVVRGEEGRVIRGKEGTGGVTIKKTGQALIFSIYKEGVQPGQCNKVVESLADYLRE 125 (128)
T ss_pred ccccccccee---ecccEEEEEecccceEEecccCCCcEEEEEcceEEEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 4444444432 3566789999883 445566666677788888899999999999999999975
No 7
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=70.46 E-value=32 Score=23.66 Aligned_cols=90 Identities=11% Similarity=0.090 Sum_probs=55.1
Q ss_pred CCCcccEEEeecCCCCchhHHHHHHHHHHHHHHhcCccccccccceeeeeeecCceEEeeeecceeeeeeeecCccccch
Q psy7055 1 MSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFGML 80 (102)
Q Consensus 1 ~~~eG~LlA~s~~~d~~a~v~AAiasniW~ay~r~g~~~~~~~~L~~~lie~e~Gri~i~~Va~~LLcl~a~~~v~~GlL 80 (102)
+|.+|..+.+--+.+....-...+-..++......... ..-++++++-+++-.+.+++-++++++++.+-=++
T Consensus 8 ~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~ 80 (141)
T PF01217_consen 8 LNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNSK-------QSPIFEHDNYRIVYKRYSDLYFVVVGDENENELLL 80 (141)
T ss_dssp EETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSSS-------STSEEEETTEEEEEEEETTEEEEEEESSTSBHHHH
T ss_pred EcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhcccc-------cceeeecccceeeeEeeccEEEEEEeecccchHHH
Confidence 47889988887776543333333445555555444211 13367899999999999998888888877664444
Q ss_pred HHHHHHHHHHhhhhhcc
Q psy7055 81 RAKAEALATYLEAPLKQ 97 (102)
Q Consensus 81 k~K~~al~~~Le~pL~~ 97 (102)
-.=++.+.+-|+.-+.+
T Consensus 81 ~e~l~~~v~~l~~~~~~ 97 (141)
T PF01217_consen 81 LEFLHRLVEVLDDYFGN 97 (141)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHhhhhhhhhhcc
Confidence 44444444444444433
No 8
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=69.71 E-value=34 Score=23.62 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=34.5
Q ss_pred ccceeeeeeecC---------ceEEeeeecceeeeeeeecCccccchHHHHHHHHHHhhh
Q psy7055 43 DSLQMVLMECSN---------GKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEA 93 (102)
Q Consensus 43 ~~L~~~lie~e~---------Gri~i~~Va~~LLcl~a~~~v~~GlLk~K~~al~~~Le~ 93 (102)
+.-+++++..++ +-++|.+-...|+.-+.++++.-|-.....+.|++||.+
T Consensus 65 ~G~KY~~l~~d~~~i~~kk~~~Gi~i~kT~~~ivi~~y~e~~~~g~~~~~v~~ladYL~~ 124 (127)
T cd00148 65 GGQKYMVIRADDRSIYGKKGAGGVVIVKTKQALVIGMYEEGVQPGQANKVVEKLADYLRS 124 (127)
T ss_pred CCeEEEEEecCccEEEeeeCCCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344555555443 335555555644444455579999999999999999975
No 9
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=67.05 E-value=5 Score=28.04 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=14.2
Q ss_pred CCCcccEEEeecCCCC
Q psy7055 1 MSYEGTLLAYSGHKDN 16 (102)
Q Consensus 1 ~~~eG~LlA~s~~~d~ 16 (102)
|++||.|++|-|+-++
T Consensus 20 fs~DGkLv~Ykgdm~k 35 (109)
T COG4831 20 FSPDGKLVEYKGDMPK 35 (109)
T ss_pred eCCCCceEEeeCCCCH
Confidence 7899999999997765
No 10
>COG3908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.09 E-value=23 Score=23.27 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=31.2
Q ss_pred eeeeeeecCceEEeeeecceeeeeeeecCccccchHH
Q psy7055 46 QMVLMECSNGKVAITQVANVLLCLYAKENVCFGMLRA 82 (102)
Q Consensus 46 ~~~lie~e~Gri~i~~Va~~LLcl~a~~~v~~GlLk~ 82 (102)
++-.|.--+|-.-|..-+++.+|-+..+..++..||=
T Consensus 11 ~ea~iryldgdf~vv~~GsfV~CAVtgk~IPldeLrY 47 (77)
T COG3908 11 REAVIRYLDGDFQVVSPGSFVLCAVTGKPIPLDELRY 47 (77)
T ss_pred ceeEEEEecCceEEEcCCcEEEEEecCCcccHHHhhh
Confidence 3446677788888999999999999999999988873
No 11
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=52.61 E-value=41 Score=23.16 Aligned_cols=52 Identities=25% Similarity=0.338 Sum_probs=34.6
Q ss_pred cccceeeeeeecC---------ceEEeeeecceeeeeeeecCccccchHHHHHHHHHHhhh
Q psy7055 42 EDSLQMVLMECSN---------GKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEA 93 (102)
Q Consensus 42 ~~~L~~~lie~e~---------Gri~i~~Va~~LLcl~a~~~v~~GlLk~K~~al~~~Le~ 93 (102)
-..-+++++..++ +-++|.+-...++..+.++++.-|-.....+.|++||..
T Consensus 66 l~G~Ky~~~~~d~~~i~~kk~~~Gv~i~kT~~aivI~~y~e~~~~g~~~~~v~~ladYL~~ 126 (129)
T smart00392 66 LGGQKYMVIRADDRSIMGKKGAGGVVIVKTKQALIIGMYKEGVQPGQANKTVEKLADYLRS 126 (129)
T ss_pred ECCeEEEEEEecCcEEEeecCCceEEEEECCCEEEEEECCCCCChHHHHHHHHHHHHHHHH
Confidence 3455666666542 223444444544444455579999999999999999975
No 12
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=44.70 E-value=40 Score=23.49 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=19.4
Q ss_pred CCCcccEEEeecCCCCchhHHHHHHHHHHHHHHhc
Q psy7055 1 MSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKN 35 (102)
Q Consensus 1 ~~~eG~LlA~s~~~d~~a~v~AAiasniW~ay~r~ 35 (102)
|+.+|.|++|-|.-++ ..|-++|.+..++.+-
T Consensus 18 Fs~~G~l~e~~G~l~~---~~a~m~A~mc~An~~m 49 (108)
T PF09941_consen 18 FSDDGKLVEYKGELDE---EMAEMLAKMCAANTRM 49 (108)
T ss_pred ECCCCeEEeeecCCCH---HHHHHHHHHHHHHHHH
Confidence 7899999999995443 2233444444444443
No 13
>PF11869 DUF3389: Protein of unknown function (DUF3389); InterPro: IPR021811 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=41.98 E-value=19 Score=23.80 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=12.9
Q ss_pred eeeeecCceEEeeee
Q psy7055 48 VLMECSNGKVAITQV 62 (102)
Q Consensus 48 ~lie~e~Gri~i~~V 62 (102)
|+|+|..|||.+|+-
T Consensus 1 MvI~Fs~GKiI~t~~ 15 (75)
T PF11869_consen 1 MVIEFSQGKIIATPH 15 (75)
T ss_pred CeEEecCCeEEEcce
Confidence 578999999998874
No 14
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=34.24 E-value=39 Score=20.78 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=13.4
Q ss_pred eeeeeeecCceEEeee
Q psy7055 46 QMVLMECSNGKVAITQ 61 (102)
Q Consensus 46 ~~~lie~e~Gri~i~~ 61 (102)
+.+-|.+++|+|+|++
T Consensus 42 ~~v~V~v~~g~lvIt~ 57 (57)
T PF08845_consen 42 DPVKVRVMPGCLVITP 57 (57)
T ss_pred CEEEEEEECCEEEEeC
Confidence 4677899999999984
No 15
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=29.49 E-value=64 Score=28.54 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=17.6
Q ss_pred chhHHHHHHHHHHHHHHhcC
Q psy7055 17 DGTVIAAITSNIWSAFEKNG 36 (102)
Q Consensus 17 ~a~v~AAiasniW~ay~r~g 36 (102)
..|++||||+-+|.-++.++
T Consensus 204 H~k~TAAIA~~Ly~~~~~~~ 223 (648)
T TIGR02578 204 HLKLTAAIASALYRYLKENN 223 (648)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 58999999999999888764
No 16
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=28.66 E-value=3.4e+02 Score=22.49 Aligned_cols=81 Identities=22% Similarity=0.339 Sum_probs=49.5
Q ss_pred CCcccEEEeecCCCCc-hhHHHHHHHHHHHHHHhcCccccccccceeeeeeecCceEEeeeecceeeeeeeecCccccch
Q psy7055 2 SYEGTLLAYSGHKDND-GTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFGML 80 (102)
Q Consensus 2 ~~eG~LlA~s~~~d~~-a~v~AAiasniW~ay~r~g~~~~~~~~L~~~lie~e~Gri~i~~Va~~LLcl~a~~~v~~GlL 80 (102)
+.-|-.| |+-+++++ .....|+...|=+-++.++ |+|+.+ ..++.|+++..-+.+.||.+++..-.-..|
T Consensus 18 S~AGKPI-ysr~G~e~~l~~~~g~~~aiiS~~~~~~------d~l~~i--~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l 88 (415)
T PF03164_consen 18 SSAGKPI-YSRYGDEDKLSSLMGVIQAIISFFQSNG------DELRSI--RAGDHRIVFLNRGPLILVAVSKTGESESQL 88 (415)
T ss_pred CCCCcee-EEecCChHHHHHHHHHHHHHHHHHHhCC------CcEEEE--EeCCEEEEEEecCCEEEEEEcCCcCCHHHH
Confidence 4445555 33344432 2223333355556666554 667665 578889998888889999998876666666
Q ss_pred HHHHHHHHHHh
Q psy7055 81 RAKAEALATYL 91 (102)
Q Consensus 81 k~K~~al~~~L 91 (102)
+.-.+-+=.++
T Consensus 89 ~~qL~~ly~qi 99 (415)
T PF03164_consen 89 RKQLDYLYSQI 99 (415)
T ss_pred HHHHHHHHHHH
Confidence 66665554443
No 17
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=28.50 E-value=48 Score=24.27 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=20.5
Q ss_pred eeeeeeeecCccccchHHHHHHHHHHhhh
Q psy7055 65 VLLCLYAKENVCFGMLRAKAEALATYLEA 93 (102)
Q Consensus 65 ~LLcl~a~~~v~~GlLk~K~~al~~~Le~ 93 (102)
=+|||++. ..+--+++.|+..|.+.|.+
T Consensus 6 riLcLHG~-~~na~if~~q~~~l~~~l~~ 33 (212)
T PF03959_consen 6 RILCLHGY-GQNAEIFRQQTSALRKALKK 33 (212)
T ss_dssp EEEEE--T-T--HHHHHHHTHHHHHHHHH
T ss_pred eEEEeCCC-CcCHHHHHHHHHHHHHHHhh
Confidence 37999998 56667899999999999876
No 18
>PF02392 Ycf4: Ycf4; InterPro: IPR003359 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA (IPR005137 from INTERPRO) [], Ycf3 [, ], and Ycf4 []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. ; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009579 thylakoid, 0016021 integral to membrane
Probab=28.25 E-value=1e+02 Score=23.35 Aligned_cols=53 Identities=25% Similarity=0.408 Sum_probs=32.1
Q ss_pred ccceeeeeeecCc----eEEeeeecc---eeeeeeeecCccccchHHHHHHHHHHhhhhhc
Q psy7055 43 DSLQMVLMECSNG----KVAITQVAN---VLLCLYAKENVCFGMLRAKAEALATYLEAPLK 96 (102)
Q Consensus 43 ~~L~~~lie~e~G----ri~i~~Va~---~LLcl~a~~~v~~GlLk~K~~al~~~Le~pL~ 96 (102)
+|+|.+-||..+| |+.-.++-+ .=|-=+ .+...+..+..|+..||++|.-||.
T Consensus 120 ~dI~sIrv~i~eg~nprr~lyl~~k~~~~IPLTri-g~~~~l~eiE~~aaeLArFL~VplE 179 (180)
T PF02392_consen 120 KDIQSIRVEIKEGFNPRRVLYLRTKGQRDIPLTRI-GEPLTLSEIEEKAAELARFLNVPLE 179 (180)
T ss_pred HHeEEEEEEEccCCCCcceEEEEecCCcccCCccC-CCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 5677777777666 322222211 111111 2235667899999999999999874
No 19
>PRK08577 hypothetical protein; Provisional
Probab=26.51 E-value=2.2e+02 Score=19.53 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=33.5
Q ss_pred ccccceeeeeeecCceEEeeeecc-----eeeeeeeecCccccchHHHHHHHHHH
Q psy7055 41 KEDSLQMVLMECSNGKVAITQVAN-----VLLCLYAKENVCFGMLRAKAEALATY 90 (102)
Q Consensus 41 ~~~~L~~~lie~e~Gri~i~~Va~-----~LLcl~a~~~v~~GlLk~K~~al~~~ 90 (102)
++++.-.+.+|-+.|++.+.++.. .-|.+.+.+.. |+|..=+..++++
T Consensus 28 ~~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~I~V~~~Dr~--GvLa~I~~~l~~~ 80 (136)
T PRK08577 28 REGMYVLLIADTDKKEIHLEPIALPGKKLVEIELVVEDRP--GVLAKITGLLAEH 80 (136)
T ss_pred CCCCEEEEEEECCCCEEEEEEcCCCCccEEEEEEEEcCCC--CHHHHHHHHHHHC
Confidence 456666777788899999999962 55777776544 6776666666553
No 20
>KOG4826|consensus
Probab=25.86 E-value=25 Score=27.65 Aligned_cols=50 Identities=22% Similarity=0.464 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHHHHHHhcCccccccccceeeeeeecCceEEeeeecceeeeeee
Q psy7055 17 DGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYA 71 (102)
Q Consensus 17 ~a~v~AAiasniW~ay~r~g~~~~~~~~L~~~lie~e~Gri~i~~Va~~LLcl~a 71 (102)
.+. ++|..+..|.+|.+.+.-=...|+ .+-|-+|+.+.....--++.+|+
T Consensus 86 ~~~-~s~~L~~~WKeYsk~D~RYv~~d~----~vvc~eg~t~~l~g~Lsl~aIya 135 (229)
T KOG4826|consen 86 PAN-SSALLAQLWKEYSKGDSRYVLTDD----VVVCVEGITALLEGPLSLLAIYA 135 (229)
T ss_pred Ccc-HHHHHHHHHHHhcccceeEeccCC----cEEeeeeehhhhhccHHHHHHHH
Confidence 344 888889999999986543111111 56788888877766655555554
No 21
>PF11250 DUF3049: Protein of unknown function (DUF3049); InterPro: IPR021410 This eukaryotic family of proteins has no known function.
Probab=24.12 E-value=91 Score=19.22 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=10.7
Q ss_pred eecCceEEeeeec
Q psy7055 51 ECSNGKVAITQVA 63 (102)
Q Consensus 51 e~e~Gri~i~~Va 63 (102)
.-+|||++++.|.
T Consensus 23 ~r~dGRLvl~~v~ 35 (56)
T PF11250_consen 23 HREDGRLVLEEVR 35 (56)
T ss_pred EccCCEEEEEEEE
Confidence 5579999999885
No 22
>KOG1486|consensus
Probab=22.73 E-value=53 Score=27.07 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=19.4
Q ss_pred ccccchHHHHHHHHHHhhhhhcc
Q psy7055 75 VCFGMLRAKAEALATYLEAPLKQ 97 (102)
Q Consensus 75 v~~GlLk~K~~al~~~Le~pL~~ 97 (102)
--+|+||+|+......|-+|=+.
T Consensus 25 yHLGlLKaKlAkyR~qLlep~~~ 47 (364)
T KOG1486|consen 25 YHLGLLKAKLAKYRQQLLEPTKG 47 (364)
T ss_pred HhHHHHHHHHHHHHHHhCCCCCC
Confidence 45899999999999999888543
No 23
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=22.40 E-value=76 Score=20.03 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHhhhhhccc
Q psy7055 79 MLRAKAEALATYLEAPLKQV 98 (102)
Q Consensus 79 lLk~K~~al~~~Le~pL~~i 98 (102)
.||.|++.|+++|++-.-++
T Consensus 51 vlk~~L~~l~~~i~~~~~~~ 70 (78)
T PF08331_consen 51 VLKKKLEQLAEWIRELGPDF 70 (78)
T ss_pred HHHHHHHHHHHHHHHHCCCC
Confidence 59999999999999876443
No 24
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=20.61 E-value=89 Score=20.36 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=12.1
Q ss_pred CCchhHHHHHHHHHHH
Q psy7055 15 DNDGTVIAAITSNIWS 30 (102)
Q Consensus 15 d~~a~v~AAiasniW~ 30 (102)
+.|.+++|||++-|-+
T Consensus 61 ~~~~elvAaIsAAI~~ 76 (82)
T TIGR01195 61 DEDEELVAAIAAAVHE 76 (82)
T ss_pred CCChhHHHHHHHHHHH
Confidence 3566899999888743
Done!