Query psy7055
Match_columns 102
No_of_seqs 62 out of 64
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 16:59:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vet_B P14, late endosomal/lys 99.9 1.5E-26 5.1E-31 161.5 10.2 101 1-101 25-125 (125)
2 3leq_A Uncharacterized protein 99.6 3.3E-15 1.1E-19 103.8 7.7 95 2-97 26-122 (126)
3 3t12_B Gliding protein MGLB; G 99.3 1.5E-11 5.1E-16 87.0 8.6 96 2-98 33-133 (136)
4 1j3w_A Giding PROTEIN-MGLB; gl 99.3 1.4E-11 4.9E-16 89.0 8.3 95 2-98 36-136 (163)
5 3kye_A Roadblock/LC7 domain, R 99.1 3.2E-10 1.1E-14 81.6 8.6 94 2-97 48-144 (150)
6 3cpt_A Mitogen-activated prote 95.1 0.26 8.8E-06 35.0 9.7 89 2-92 45-134 (143)
7 4ftx_A Protein SLM4; EGO compl 94.4 0.6 2E-05 33.9 10.1 87 3-89 41-151 (170)
8 3lgo_A Protein SLM4; roadblock 92.6 1.3 4.5E-05 32.1 9.4 89 3-91 51-163 (172)
9 3nul_A Profilin I; cytoskeleto 86.2 5.7 0.0002 26.7 8.2 88 3-93 27-127 (130)
10 3d9y_A Profilin; yeast, actin- 82.7 8.5 0.00029 25.7 8.1 53 41-93 63-124 (127)
11 1acf_A Profilin I; protein bin 80.5 9 0.00031 25.5 7.3 89 2-93 23-122 (125)
12 2hz5_A Dynein light chain 2A, 75.3 6.1 0.00021 26.2 5.1 69 1-73 33-104 (106)
13 3msh_A Hepatitis B virus X-int 74.7 16 0.00054 24.2 7.0 67 2-75 25-92 (99)
14 2v8f_A Profilin-2, profilin II 72.7 12 0.00041 25.6 6.3 37 57-93 101-137 (140)
15 3tjz_C Coatomer subunit zeta-1 64.8 31 0.0011 23.7 9.7 85 1-95 19-105 (153)
16 2pbd_P Profilin-1, profilin I; 64.5 12 0.00042 25.4 4.9 37 57-93 100-136 (139)
17 3l7h_A RE64145P, roadblock; LC 64.3 19 0.00065 23.4 5.6 71 2-73 25-95 (97)
18 1ypr_A Profilin; actin-binding 61.0 16 0.00055 24.3 4.9 88 3-93 23-122 (125)
19 1w63_Q Adapter-related protein 58.8 40 0.0014 23.0 10.4 88 1-95 8-95 (158)
20 2vgl_S AP-2 complex subunit si 54.9 43 0.0015 22.2 10.5 88 1-95 8-95 (142)
21 3nec_A Profilin, inflammatory 49.7 29 0.00099 24.5 4.9 37 57-93 124-163 (166)
22 2l02_A Uncharacterized protein 23.3 73 0.0025 20.3 3.0 21 18-38 3-23 (82)
23 2pco_A Latarcin-1, LTC-1; cont 21.3 65 0.0022 16.4 2.0 20 76-95 3-22 (26)
24 2jkg_A Profilin; proline-rich 20.2 1.6E+02 0.0056 21.2 4.7 38 56-93 128-168 (179)
No 1
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=99.94 E-value=1.5e-26 Score=161.55 Aligned_cols=101 Identities=61% Similarity=1.032 Sum_probs=91.1
Q ss_pred CCCcccEEEeecCCCCchhHHHHHHHHHHHHHHhcCccccccccceeeeeeecCceEEeeeecceeeeeeeecCccccch
Q psy7055 1 MSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFGML 80 (102)
Q Consensus 1 ~~~eG~LlA~s~~~d~~a~v~AAiasniW~ay~r~g~~~~~~~~L~~~lie~e~Gri~i~~Va~~LLcl~a~~~v~~GlL 80 (102)
++.||.+||++++++.|++.+|||+|++|+.|++.+.+.|.+++++|+|||+++|++.|+++++.+||+++++++++|++
T Consensus 25 vs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a~~a~L~Vla~~~a~lGlv 104 (125)
T 1vet_B 25 LNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGML 104 (125)
T ss_dssp ECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEEEECTTSCHHHH
T ss_pred ECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEcCCeEEEEEeCCCCChHHH
Confidence 47899999999998899999999999999999999998899999999999999999999999779999999999999999
Q ss_pred HHHHHHHHHHhhhhhcccccC
Q psy7055 81 RAKAEALATYLEAPLKQVVNT 101 (102)
Q Consensus 81 k~K~~al~~~Le~pL~~i~~~ 101 (102)
+.|++.+++||.+|||+|+.|
T Consensus 105 ~~~m~~lv~~L~~~lr~~~~~ 125 (125)
T 1vet_B 105 KAKAQALVQYLEEPLTQVAAS 125 (125)
T ss_dssp HHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHhhhhhhhccC
Confidence 999999999999999999875
No 2
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=99.59 E-value=3.3e-15 Score=103.76 Aligned_cols=95 Identities=18% Similarity=0.248 Sum_probs=71.9
Q ss_pred CCcccEEEeecCCC-CchhHHHHHHHHHHHHHHhcCccccccccceeeeeeecCceEEeeeecc-eeeeeeeecCccccc
Q psy7055 2 SYEGTLLAYSGHKD-NDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVAN-VLLCLYAKENVCFGM 79 (102)
Q Consensus 2 ~~eG~LlA~s~~~d-~~a~v~AAiasniW~ay~r~g~~~~~~~~L~~~lie~e~Gri~i~~Va~-~LLcl~a~~~v~~Gl 79 (102)
+.||.+|+++...+ .++..+||++|.+|+..++.+.+ |..+.+++++||+++|.+.++++++ .+||+++++++++|+
T Consensus 26 s~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~-~~~G~~~qv~ve~~~G~l~v~~ag~~a~L~vla~~~a~lG~ 104 (126)
T 3leq_A 26 SEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMD-FRRGPVRQALIEMGKGYLILTAAGPGAHLVVLTRQGADVGV 104 (126)
T ss_dssp ETTSCEEEECTTSCHHHHHHHHHHHHHHHHC--------------CEEEEECSSCEEEEEESSTTEEEEEEECTTCCHHH
T ss_pred cCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEEEeCCCEEEEEEeCCCcEEEEEeCCCCCHHH
Confidence 57999999998766 58999999999999999999876 6889999999999999999999996 999999999999999
Q ss_pred hHHHHHHHHHHhhhhhcc
Q psy7055 80 LRAKAEALATYLEAPLKQ 97 (102)
Q Consensus 80 Lk~K~~al~~~Le~pL~~ 97 (102)
++.+++.+++.+.+-|..
T Consensus 105 v~~em~~~v~ri~~~L~~ 122 (126)
T 3leq_A 105 VAYQMNMLVKKIGEHLSA 122 (126)
T ss_dssp HHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999888776653
No 3
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=99.28 E-value=1.5e-11 Score=87.05 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=85.9
Q ss_pred CCcccEEEeecC----CCCchhHHHHHHHHHHHHHHhcCccccccccceeeeeeecCceEEeeeecc-eeeeeeeecCcc
Q psy7055 2 SYEGTLLAYSGH----KDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVAN-VLLCLYAKENVC 76 (102)
Q Consensus 2 ~~eG~LlA~s~~----~d~~a~v~AAiasniW~ay~r~g~~~~~~~~L~~~lie~e~Gri~i~~Va~-~LLcl~a~~~v~ 76 (102)
+.+|.+|++.+. ++-|...+||+++....+.++-++. +.+++++++++|.++|.+.+.+|+. ++|.++.+++++
T Consensus 33 d~dG~vIa~~~~~~~~~~~d~~~lAAl~A~~~~a~~~la~~-Lge~~~~~l~~eGe~~~i~i~~vg~~~iLvvifd~~~~ 111 (136)
T 3t12_B 33 DRKGFVLAHKEALWAPKPPPLDTLATLVASNAAATQALAKL-LGEARFQEEVHQGERMGLYVDEAGEHALLVLVFDETAP 111 (136)
T ss_dssp ETTC-CCEEEECTTSCCCSCHHHHHHHHHHHHHHHHHHHHH-TTCSCCCCEEEECSSCEEEEEESSTTEEEEEEECTTSC
T ss_pred cCCCCEEEEeccccCCCCCcHHHHHHHHHHHHHHHHHHHHH-HCCCchhHheEEcCcCCEEEEEcCCCEEEEEEeCCCCC
Confidence 579999999985 4569999999999999999998877 4667899999999999999999986 999999999999
Q ss_pred ccchHHHHHHHHHHhhhhhccc
Q psy7055 77 FGMLRAKAEALATYLEAPLKQV 98 (102)
Q Consensus 77 ~GlLk~K~~al~~~Le~pL~~i 98 (102)
+|++|.+++..++-|.+=|.+.
T Consensus 112 LG~Vrl~~kka~~~l~~il~~~ 133 (136)
T 3t12_B 112 LGKVKLHGKAAAAALAAIAEEA 133 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEeeehHHHHHHHHHHHHHHH
Confidence 9999999999999998877654
No 4
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=99.27 E-value=1.4e-11 Score=89.03 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=84.8
Q ss_pred CCcccEEEe-----ecCCCCchhHHHHHHHHHHHHHHhcCccccccccceeeeeeecCceEEeeeecc-eeeeeeeecCc
Q psy7055 2 SYEGTLLAY-----SGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVAN-VLLCLYAKENV 75 (102)
Q Consensus 2 ~~eG~LlA~-----s~~~d~~a~v~AAiasniW~ay~r~g~~~~~~~~L~~~lie~e~Gri~i~~Va~-~LLcl~a~~~v 75 (102)
+.||.+|++ ++..+ |+..+||++|.+.+..++-++. |..+.++++++|+++|.+.++++++ .+|++.+++++
T Consensus 36 s~DGl~ia~~~~~~~~~~~-d~d~lAA~~A~~~sl~~~~a~~-l~~G~~~q~~ve~~~g~l~v~~~g~~a~L~Vla~~~a 113 (163)
T 1j3w_A 36 DRKGFVLAHKEALWAPKPP-PLDTLATLVAGNAAATQALAKL-LGEARFQEEVHQGERMGLYVDEAGEHALLVLVFDETA 113 (163)
T ss_dssp ETTSCEEEEEECTTSCCCS-CHHHHHHHHHHHHHHTHHHHHH-TTCSSCSEEEEECSSCEEEEEESSTTEEEEEEECTTS
T ss_pred cCCCCEEEeecccccCCCC-cHHHHHHHHHHHHHHHHHHHHH-hCCCCceEEEEEeCCcEEEEEEeCCCeEEEEEeCCCC
Confidence 579999999 87777 9999999999999998887754 5678899999999999999999997 99999999999
Q ss_pred cccchHHHHHHHHHHhhhhhccc
Q psy7055 76 CFGMLRAKAEALATYLEAPLKQV 98 (102)
Q Consensus 76 ~~GlLk~K~~al~~~Le~pL~~i 98 (102)
++|+++..++.+++.|.+-|+..
T Consensus 114 ~lG~v~~~m~~~v~~l~~~L~~~ 136 (163)
T 1j3w_A 114 PLGKVKLHGKRASEALARIAEEA 136 (163)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888777766553
No 5
>3kye_A Roadblock/LC7 domain, ROBL_LC7; alpga-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces avermitilis}
Probab=99.11 E-value=3.2e-10 Score=81.64 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=81.5
Q ss_pred CCcccEEEee-cCCCCchhHHHHHHHHHHHHHHhcCccccc-cccceeeeeeecCceEEeeeecc-eeeeeeeecCcccc
Q psy7055 2 SYEGTLLAYS-GHKDNDGTVIAAITSNIWSAFEKNGRSAFK-EDSLQMVLMECSNGKVAITQVAN-VLLCLYAKENVCFG 78 (102)
Q Consensus 2 ~~eG~LlA~s-~~~d~~a~v~AAiasniW~ay~r~g~~~~~-~~~L~~~lie~e~Gri~i~~Va~-~LLcl~a~~~v~~G 78 (102)
+.||. ++.+ +.+..++.-+||++|.+.+.-++-+.+ |. ...++|+|||+++|.+.++.++. .+|++.+++++++|
T Consensus 48 S~DGL-la~S~~l~~~dae~LAA~aSgl~SLa~~aa~~-~~~~G~vrqv~VE~~~G~l~v~~aG~ga~LaVla~~~adlG 125 (150)
T 3kye_A 48 SCDGL-VKSVHGLDPDSADHMAALASGLYSLGRSAGIR-FGDGGDVRQVVVELDSTLLFVSTAGSGTCLAVLAGREADAA 125 (150)
T ss_dssp ETTSC-EEEEESSCHHHHHHHHHHHHHHHHHHHHHHHH-HSSSSCCCEEEEEESSEEEEEEEEETTEEEEEEEETTSCHH
T ss_pred cCCCC-EeecCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hccCCCeEEEEEEeCCcEEEEEEcCCCcEEEEEeCCCCCHH
Confidence 57999 6665 555568999999999999999887765 45 68999999999999999999996 99999999999999
Q ss_pred chHHHHHHHHHHhhhhhcc
Q psy7055 79 MLRAKAEALATYLEAPLKQ 97 (102)
Q Consensus 79 lLk~K~~al~~~Le~pL~~ 97 (102)
++.-.|+.+++.+.+-|..
T Consensus 126 lv~~em~~lv~rig~~Lt~ 144 (150)
T 3kye_A 126 VLGYEMAMLVKSVRPYLMT 144 (150)
T ss_dssp HHHHHHHHHHHHHGGGGC-
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999888777654
No 6
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=95.14 E-value=0.26 Score=35.03 Aligned_cols=89 Identities=10% Similarity=0.157 Sum_probs=65.2
Q ss_pred CCcccEEEeecCCC-CchhHHHHHHHHHHHHHHhcCccccccccceeeeeeecCceEEeeeecceeeeeeeecCccccch
Q psy7055 2 SYEGTLLAYSGHKD-NDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFGML 80 (102)
Q Consensus 2 ~~eG~LlA~s~~~d-~~a~v~AAiasniW~ay~r~g~~~~~~~~L~~~lie~e~Gri~i~~Va~~LLcl~a~~~v~~GlL 80 (102)
|+||..|..++.+. .+.+.-..+.+. |..+..++. -+.-+..|.++--+++..++-.....+.+-++|.++.+.|+|
T Consensus 45 DrDGVpi~kv~~~~~~e~~~r~s~lsT-f~~A~dQ~s-KLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~aNtG~I 122 (143)
T 3cpt_A 45 DRDGVPVIKVANDNAPEHALRPGFLST-FALATDQGS-KLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSANTGLI 122 (143)
T ss_dssp CTTSCEEEEEECTTSCGGGGSHHHHHH-HHHHHHHHH-HHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTSCHHHH
T ss_pred CCCCcEEEEecCCCCchhhcccchhhh-HHHHHHHHh-hcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCCCCchhH
Confidence 68999999998765 345555555555 444433321 123467889998899988888788889999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy7055 81 RAKAEALATYLE 92 (102)
Q Consensus 81 k~K~~al~~~Le 92 (102)
.+=-+.|..+|+
T Consensus 123 l~Le~~L~p~l~ 134 (143)
T 3cpt_A 123 VSLEKELAPLFE 134 (143)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 876666665554
No 7
>4ftx_A Protein SLM4; EGO complex, EGO3, TOR signaling, protein binding; 2.10A {Saccharomyces cerevisiae} PDB: 3lgo_A 4fuw_A
Probab=94.36 E-value=0.6 Score=33.94 Aligned_cols=87 Identities=18% Similarity=0.319 Sum_probs=60.4
Q ss_pred CcccEEEeecCCCCc-------------hhHHHHHHHHHHHHHHhcCccccc---------cccceeeeeeecCceEEee
Q psy7055 3 YEGTLLAYSGHKDND-------------GTVIAAITSNIWSAFEKNGRSAFK---------EDSLQMVLMECSNGKVAIT 60 (102)
Q Consensus 3 ~eG~LlA~s~~~d~~-------------a~v~AAiasniW~ay~r~g~~~~~---------~~~L~~~lie~e~Gri~i~ 60 (102)
..|++|+|+..++.+ -++-+=+.=.=|++=|+.-.+--. -..-+--.-|.|+=+.|++
T Consensus 41 ~nGsIlSfa~s~~~~~~~~~~~~~SlnNLKMMsLLikDKWseDE~~p~eQ~t~ScY~~~i~~~~trIYTYEiEDLHaCVA 120 (170)
T 4ftx_A 41 TNGGILSYATSNNDVPKNSINEINSVNNLKMMSLLIKDKWSEDENDTEEQHSNSCYPVEIDSFKTKIYTYEMEDLHTCVA 120 (170)
T ss_dssp TTCCEEEEEECCSSSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCSSEEEEEEETTEEEEEEEEEETTEEEEEE
T ss_pred CCCcEEEEecCCCCcccCCcCccccchhHHHHHHHHHhhhhccccChhhhhcccceeEEeccceeEEEEEEhhhhHHHHh
Confidence 589999999864432 122333334459998875433100 0112223457789999999
Q ss_pred eecc--eeeeeeeecCccccchHHHHHHHHH
Q psy7055 61 QVAN--VLLCLYAKENVCFGMLRAKAEALAT 89 (102)
Q Consensus 61 ~Va~--~LLcl~a~~~v~~GlLk~K~~al~~ 89 (102)
+|++ +||-++|+.+-+.|+|-.|+++...
T Consensus 121 qIP~SDLLLLfIAd~~yPyGLLv~KmK~al~ 151 (170)
T 4ftx_A 121 QIPNSDLLLLFIAEGSFPYGLLVIKIERAMR 151 (170)
T ss_dssp ECTTSSEEEEEEEETTSCHHHHHHHHHHHHG
T ss_pred cCCCCCeEEEEeecCCCchHHHHHHHHHHHH
Confidence 9985 9999999999999999999988754
No 8
>3lgo_A Protein SLM4; roadblock/LC7, domain SWAP, autophagy, membrane, transmembra transport, vacuole, protein binding; 2.85A {Saccharomyces cerevisiae}
Probab=92.60 E-value=1.3 Score=32.08 Aligned_cols=89 Identities=21% Similarity=0.405 Sum_probs=59.8
Q ss_pred CcccEEEeecCCCC-------------chhHHHHHHHHHHHHHHhcCcc-----cc--ccccce--eeeeeecCceEEee
Q psy7055 3 YEGTLLAYSGHKDN-------------DGTVIAAITSNIWSAFEKNGRS-----AF--KEDSLQ--MVLMECSNGKVAIT 60 (102)
Q Consensus 3 ~eG~LlA~s~~~d~-------------~a~v~AAiasniW~ay~r~g~~-----~~--~~~~L~--~~lie~e~Gri~i~ 60 (102)
..|++|+|+...+. .=+.-|=+.=.=|++=|..-++ .. +-+... ----|.|+=..|++
T Consensus 51 tnGsIlSfa~~~~~~~~~~~~e~~SlNNLKMMaLLIkDKWsEDe~d~~~q~~~scy~~~~~~~~triYTyElEDLHacvA 130 (172)
T 3lgo_A 51 TNGGILSYATSNNDVPKNSINEINSVNNLKMMSLLIKDKWSEDENDTEEQHSNSCYPVEIDSFKTKIYTYEMEDLHTCVA 130 (172)
T ss_dssp TTCCEEEEECCC------------CHHHHHHHHHHHHHHHHTTTTCC---CCSSBCCEEETTEEECEEEEESSSCEEEEE
T ss_pred CCCcEEEEeccCCccccCCCCcccchhhHHHHHHHHhhcccccccchhHhccccceeecccccceeEEEEehhHHHHHHH
Confidence 47999999987652 2345666666679887632111 00 001111 12247779999999
Q ss_pred eecc--eeeeeeeecCccccchHHHHHHHHHHh
Q psy7055 61 QVAN--VLLCLYAKENVCFGMLRAKAEALATYL 91 (102)
Q Consensus 61 ~Va~--~LLcl~a~~~v~~GlLk~K~~al~~~L 91 (102)
+|++ +||-++|..+-+.|+|-.|+++..+-+
T Consensus 131 qIP~SdLLLlfIA~~~fPyGLLvmKmK~al~af 163 (172)
T 3lgo_A 131 QIPNSDLLLLFIAEGSFPYGLLVIKIERAMREL 163 (172)
T ss_dssp ECTTTCEEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred hCCCCCeEEEEEecCCCCchHHHHHHHHHHHHH
Confidence 9986 999999999999999999998775543
No 9
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=86.22 E-value=5.7 Score=26.73 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=50.4
Q ss_pred CcccEEEeec-CCCCchhHHHHHHHHHHHHHHhcC--ccccccccceeeeeeecCce----------EEeeeecceeeee
Q psy7055 3 YEGTLLAYSG-HKDNDGTVIAAITSNIWSAFEKNG--RSAFKEDSLQMVLMECSNGK----------VAITQVANVLLCL 69 (102)
Q Consensus 3 ~eG~LlA~s~-~~d~~a~v~AAiasniW~ay~r~g--~~~~~~~~L~~~lie~e~Gr----------i~i~~Va~~LLcl 69 (102)
.||++-|.+. .+.-.+.=+.+|+ +... ++.. .+.+.-..-+++++-.|.++ ++|.+-...|+..
T Consensus 27 ~dGsvWA~s~gf~~~~p~E~~~i~-~~f~--d~~~~~~~Gl~l~G~Ky~~ir~d~~~~i~~kkg~~Gv~i~kT~~aivig 103 (130)
T 3nul_A 27 QDGSVWAQSAKFPQLKPQEIDGIK-KDFE--EPGFLAPTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVTIKKTNQALVFG 103 (130)
T ss_dssp TTSCEEEECTTCCCCCHHHHHHHH-HHHH--STTSSTTTCEEETTEEEEEEEEETTTEEEEEETTEEEEEEECSSEEEEE
T ss_pred CCCCEEEcCCCcccCCHHHHHHHH-Hhcc--CchhhccCCEEECCeEEEEEEeCCCcEEEEecCCCeEEEEECCCEEEEE
Confidence 5788877653 3232233333442 2221 1111 11233345566666666232 4444445655555
Q ss_pred eeecCccccchHHHHHHHHHHhhh
Q psy7055 70 YAKENVCFGMLRAKAEALATYLEA 93 (102)
Q Consensus 70 ~a~~~v~~GlLk~K~~al~~~Le~ 93 (102)
+.++.+.-|....+.+.|++||..
T Consensus 104 ~y~e~~~~g~~~~~ve~ladYL~~ 127 (130)
T 3nul_A 104 FYDEPMTGGQCNLVVERLGDYLIE 127 (130)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHH
Confidence 666679999999999999999975
No 10
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=82.68 E-value=8.5 Score=25.66 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=37.8
Q ss_pred ccccceeeeeeecCce---------EEeeeecceeeeeeeecCccccchHHHHHHHHHHhhh
Q psy7055 41 KEDSLQMVLMECSNGK---------VAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEA 93 (102)
Q Consensus 41 ~~~~L~~~lie~e~Gr---------i~i~~Va~~LLcl~a~~~v~~GlLk~K~~al~~~Le~ 93 (102)
.-..-+++++-.++.. ++|.+-...|+..+.++++.-|....+.+.|++||..
T Consensus 63 ~l~G~Ky~vir~d~~~i~~kkg~~Gv~i~kT~~aivi~~y~e~~~~g~~~~~ve~ladYL~~ 124 (127)
T 3d9y_A 63 ILAGQKYITIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVG 124 (127)
T ss_dssp EETTEEEEEEEECSSEEEEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEcCeEEEEEEeCcceEEEEcCCceEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456667777766332 4555555655555566789999999999999999975
No 11
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=80.53 E-value=9 Score=25.46 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=51.1
Q ss_pred CCcccEEEeecCCCCchhHHHHHHHHH--HHHHHhcCccccccccceeeeeeecC---------ceEEeeeecceeeeee
Q psy7055 2 SYEGTLLAYSGHKDNDGTVIAAITSNI--WSAFEKNGRSAFKEDSLQMVLMECSN---------GKVAITQVANVLLCLY 70 (102)
Q Consensus 2 ~~eG~LlA~s~~~d~~a~v~AAiasni--W~ay~r~g~~~~~~~~L~~~lie~e~---------Gri~i~~Va~~LLcl~ 70 (102)
+.||++.|.+..=.-.+.=+.+|+.-+ -.....+| +.-..-+++.+-.++ +-++|.+....++.-+
T Consensus 23 g~dGsvwA~s~~f~~~~~E~~~i~~~f~~~~~~~~~G---i~l~G~KY~~i~~d~~~i~~kk~~~Gv~i~kT~~aivI~~ 99 (125)
T 1acf_A 23 GLDGNTWATSAGFAVTPAQGTTLAGAFNNADAIRAGG---FDLAGVHYVTLRADDRSIYGKKGSSGVITVKTSKAILVGV 99 (125)
T ss_dssp ETTSCEEEECTTCCCCHHHHHHHHHHHHCCHHHHHHC---EEETTEEEEEEEESSSEEEEEETTEEEEEEECSSEEEEEE
T ss_pred cCCCCEEEecCCCccCHHHHHHHHHHhcCcchhhcCC---eEECCEEEEEEEecCcEEEeecCCCeEEEEECCCEEEEEE
Confidence 358899887643221222223332211 01222233 233555666666652 2345555556555555
Q ss_pred eecCccccchHHHHHHHHHHhhh
Q psy7055 71 AKENVCFGMLRAKAEALATYLEA 93 (102)
Q Consensus 71 a~~~v~~GlLk~K~~al~~~Le~ 93 (102)
.++++.-|-.....+.|++||.+
T Consensus 100 y~~~~~~g~~~~~ve~ladyL~~ 122 (125)
T 1acf_A 100 YNEKIQPGTAANVVEKLADYLIG 122 (125)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999975
No 12
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=75.29 E-value=6.1 Score=26.20 Aligned_cols=69 Identities=10% Similarity=0.132 Sum_probs=43.7
Q ss_pred CCCcccEEEeecCCCCchhHHHHHHHHHHHHHHhcCc---cccccccceeeeeeecCceEEeeeecceeeeeeeec
Q psy7055 1 MSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGR---SAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKE 73 (102)
Q Consensus 1 ~~~eG~LlA~s~~~d~~a~v~AAiasniW~ay~r~g~---~~~~~~~L~~~lie~e~Gri~i~~Va~~LLcl~a~~ 73 (102)
+|.+|..|.++.+.+ -..-.|+.+|.-..+... +.-.+|+|..+=|=...--|.|++=..++|+++=++
T Consensus 33 ln~~G~pIrSt~d~~----~~~~yA~li~~L~~~A~~~vr~lDp~deL~fLRiRTkkhEimIapd~~~~LiVvQ~~ 104 (106)
T 2hz5_A 33 VNTEGIPIKSTMDNP----TTTQYASLMHSFILKARSTVRDIDPQNDLTFLRIRSKKNEIMVAPDKDYFLIVIQNP 104 (106)
T ss_dssp ECTTCCEEEESSCHH----HHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEEEC---CEEEEEECC
T ss_pred EcCCCCeEEEecCch----HHHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeCCcEEEEEecCCEEEEEEecC
Confidence 478999998885432 233444555554443321 122468999998999999999988888888877654
No 13
>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*
Probab=74.67 E-value=16 Score=24.21 Aligned_cols=67 Identities=16% Similarity=0.291 Sum_probs=46.7
Q ss_pred CCcccEEEeecCCC-CchhHHHHHHHHHHHHHHhcCccccccccceeeeeeecCceEEeeeecceeeeeeeecCc
Q psy7055 2 SYEGTLLAYSGHKD-NDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENV 75 (102)
Q Consensus 2 ~~eG~LlA~s~~~d-~~a~v~AAiasniW~ay~r~g~~~~~~~~L~~~lie~e~Gri~i~~Va~~LLcl~a~~~v 75 (102)
|+.|.=|+..|.-. +.+-++.+|+--. .+--. ..++--.+.||.+++++.|.+-....+++|-..+.
T Consensus 25 D~qGLcLg~~G~~s~~~AG~i~~la~~A----akL~p---~~~~~P~I~LEsDs~~~~Iqk~~~iTvAV~k~~~~ 92 (99)
T 3msh_A 25 DSQGLNLGCRGTLSDEHAGVISVLAQQA----AKLTS---DPTDIPVVCLESDNGNIMIQKHDGITVAVHKMASL 92 (99)
T ss_dssp CTTCCEEEEEETCCGGGHHHHHHHHHHH----HHTCC---CSSCCCCEEEEETTEEEEEEEETTEEEEEEECC--
T ss_pred CCCCCcccccCCCCcccchHHHHHHHHH----HhcCC---CCCCCCEEEEEeCCceEEEEeCCcEEEEEEccchh
Confidence 56788899998855 6788887774221 11100 12355678999999999999999999999876553
No 14
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Probab=72.75 E-value=12 Score=25.57 Aligned_cols=37 Identities=38% Similarity=0.478 Sum_probs=29.3
Q ss_pred EEeeeecceeeeeeeecCccccchHHHHHHHHHHhhh
Q psy7055 57 VAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEA 93 (102)
Q Consensus 57 i~i~~Va~~LLcl~a~~~v~~GlLk~K~~al~~~Le~ 93 (102)
++|.+-...|+..+.++.+.-|-.....+.|++||..
T Consensus 101 v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~ 137 (140)
T 2v8f_A 101 VAVGRAGRVLVFVMGKEGVHGGGLNKKAYSMAKYLRD 137 (140)
T ss_dssp EEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5565666666666666679999999999999999975
No 15
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=64.82 E-value=31 Score=23.67 Aligned_cols=85 Identities=14% Similarity=0.056 Sum_probs=56.9
Q ss_pred CCCcccEEEeecCCC--CchhHHHHHHHHHHHHHHhcCccccccccceeeeeeecCceEEeeeecceeeeeeeecCcccc
Q psy7055 1 MSYEGTLLAYSGHKD--NDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFG 78 (102)
Q Consensus 1 ~~~eG~LlA~s~~~d--~~a~v~AAiasniW~ay~r~g~~~~~~~~L~~~lie~e~Gri~i~~Va~~LLcl~a~~~v~~G 78 (102)
+|++|..+-+--+.+ ...+--.++-..+|+...|.. .-+++.++-+++-.+.+++-+|++++.+.+--
T Consensus 19 ln~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~----------~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel 88 (153)
T 3tjz_C 19 LDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTD----------SEIALLEGLTVVYKSSIDLYFYVIGSSYENEL 88 (153)
T ss_dssp ECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCC----------CCEEEETTEEEEEEECSSCEEEEEEETTSCHH
T ss_pred ECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC----------CCEEEECCEEEEEEEECCEEEEEEEcCCCChH
Confidence 477888777766654 233444667778888875421 12667788888888999988888888776655
Q ss_pred chHHHHHHHHHHhhhhh
Q psy7055 79 MLRAKAEALATYLEAPL 95 (102)
Q Consensus 79 lLk~K~~al~~~Le~pL 95 (102)
++=.=++.+.+-|+.-+
T Consensus 89 ~ile~L~~~ve~l~~yf 105 (153)
T 3tjz_C 89 MLMTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55444666666555555
No 16
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*
Probab=64.47 E-value=12 Score=25.41 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=28.6
Q ss_pred EEeeeecceeeeeeeecCccccchHHHHHHHHHHhhh
Q psy7055 57 VAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEA 93 (102)
Q Consensus 57 i~i~~Va~~LLcl~a~~~v~~GlLk~K~~al~~~Le~ 93 (102)
++|.+-...|+..+.++.+.-|-.....+.|++||..
T Consensus 100 v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~ 136 (139)
T 2pbd_P 100 VTVTKTDKTLVLLMGKEGVHGGLINKKCYEMASHLRR 136 (139)
T ss_dssp EEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5555555655555556789999999999999999975
No 17
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=64.32 E-value=19 Score=23.39 Aligned_cols=71 Identities=8% Similarity=0.113 Sum_probs=44.4
Q ss_pred CCcccEEEeecCCCCchhHHHHHHHHHHHHHHhcCccccccccceeeeeeecCceEEeeeecceeeeeeeec
Q psy7055 2 SYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKE 73 (102)
Q Consensus 2 ~~eG~LlA~s~~~d~~a~v~AAiasniW~ay~r~g~~~~~~~~L~~~lie~e~Gri~i~~Va~~LLcl~a~~ 73 (102)
|.+|..+-++-+ ...+.-.|+...+++...+..-++--..|+|..+=|=....-|.|++=..++|.++-++
T Consensus 25 n~~G~pirst~d-~~~~~~yA~~~~~L~~~a~~~vrdlDp~del~fLRiRTkk~EimIaPd~~f~liVvQ~~ 95 (97)
T 3l7h_A 25 NNEGIPVKSTLD-NTTTVQYAGLMSQLADKARSVVRDLDPSNDMTFLRVRSKKHEIMVAPDKDFILIVIQNP 95 (97)
T ss_dssp ETTSCEEEESSC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEEEEETTEEEEEEEC-
T ss_pred CCCCCEeEEeCC-hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCcEEEEEcCCCEEEEEEecC
Confidence 678888866532 23344455444444433332222222358999998899999999998777888877654
No 18
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=61.00 E-value=16 Score=24.27 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=51.2
Q ss_pred Ccc-cEEEeecCCCCchhHHHHHHHHH--HHHHHhcCccccccccceeeeeeecC---------ceEEeeeecceeeeee
Q psy7055 3 YEG-TLLAYSGHKDNDGTVIAAITSNI--WSAFEKNGRSAFKEDSLQMVLMECSN---------GKVAITQVANVLLCLY 70 (102)
Q Consensus 3 ~eG-~LlA~s~~~d~~a~v~AAiasni--W~ay~r~g~~~~~~~~L~~~lie~e~---------Gri~i~~Va~~LLcl~ 70 (102)
.|| ++-|.+..=.-.+.=+.+|+.-. -.....+| +.-..-+++.+-.|+ +-++|.+-...++.-+
T Consensus 23 ~DG~svwA~s~~f~~~~~E~~~i~~~f~~~~~~~~~G---l~l~G~KY~~i~~d~~~i~~kk~~~Gi~i~kT~~aivI~~ 99 (125)
T 1ypr_A 23 RAGDAVWATSGGLSLQPNEIGEIVQGFDNPAGLQSNG---LHIQGQKFMLLRADDRSIYGRHDAEGVVCVRTKQTVIIAH 99 (125)
T ss_dssp TTSCCEEEEESCCCCCHHHHHHHHHHTTCTHHHHHHC---EEETTEEEEEEEECSSEEEEEETTEEEEEEECSSEEEEEE
T ss_pred CCCCcEEEECCCCccCHHHHHHHHHhccCcchhccCC---eEECCEEEEEEecCCcEEEEecCCceEEEEECCCEEEEEE
Confidence 588 88887633232222233332211 12222333 233555666666663 2344555556555555
Q ss_pred eecCccccchHHHHHHHHHHhhh
Q psy7055 71 AKENVCFGMLRAKAEALATYLEA 93 (102)
Q Consensus 71 a~~~v~~GlLk~K~~al~~~Le~ 93 (102)
.++.+.-|-.....+.|++||..
T Consensus 100 y~e~~~~g~~~~~ve~ladYL~~ 122 (125)
T 1ypr_A 100 YPPTVQAGEATKIVEQLADYLIG 122 (125)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Confidence 66679999999999999999975
No 19
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=58.82 E-value=40 Score=22.96 Aligned_cols=88 Identities=10% Similarity=0.030 Sum_probs=55.0
Q ss_pred CCCcccEEEeecCCCCchhHHHHHHHHHHHHHHhcCccccccccceeeeeeecCceEEeeeecceeeeeeeecCccccch
Q psy7055 1 MSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFGML 80 (102)
Q Consensus 1 ~~~eG~LlA~s~~~d~~a~v~AAiasniW~ay~r~g~~~~~~~~L~~~lie~e~Gri~i~~Va~~LLcl~a~~~v~~GlL 80 (102)
+|+.|..+-+--+.+...+--..+...+|+....... -+.-+++.++-+++-.+.+++.++++++.+.+-=++
T Consensus 8 l~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~ 80 (158)
T 1w63_Q 8 FSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKP-------KMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT 80 (158)
T ss_dssp ECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCS-------SSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH
T ss_pred ECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCC-------CCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 4778887777766654333333455677877765321 133477889999999999998888888776654444
Q ss_pred HHHHHHHHHHhhhhh
Q psy7055 81 RAKAEALATYLEAPL 95 (102)
Q Consensus 81 k~K~~al~~~Le~pL 95 (102)
=.=++.+.+-|+.-+
T Consensus 81 le~L~~~vevl~~yf 95 (158)
T 1w63_Q 81 LELIHRYVELLDKYF 95 (158)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 20
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=54.89 E-value=43 Score=22.16 Aligned_cols=88 Identities=10% Similarity=0.053 Sum_probs=55.1
Q ss_pred CCCcccEEEeecCCCCchhHHHHHHHHHHHHHHhcCccccccccceeeeeeecCceEEeeeecceeeeeeeecCccccch
Q psy7055 1 MSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFGML 80 (102)
Q Consensus 1 ~~~eG~LlA~s~~~d~~a~v~AAiasniW~ay~r~g~~~~~~~~L~~~lie~e~Gri~i~~Va~~LLcl~a~~~v~~GlL 80 (102)
+|+.|..+-+--+.+-.......+...++....... +. +.-+++.++-+++-.+.+++.++++++.+.+-=++
T Consensus 8 ~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~------~~-~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~ 80 (142)
T 2vgl_S 8 QNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRD------AK-HTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY 80 (142)
T ss_dssp EETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCC------TT-SCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHH
T ss_pred EcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCC------CC-CCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHH
Confidence 367788777777764333344456677777776321 11 34478899999999999998888888776654444
Q ss_pred HHHHHHHHHHhhhhh
Q psy7055 81 RAKAEALATYLEAPL 95 (102)
Q Consensus 81 k~K~~al~~~Le~pL 95 (102)
=.=++.+.+-|+.-+
T Consensus 81 le~L~~~ve~l~~yf 95 (142)
T 2vgl_S 81 LEAIHNFVEVLNEYF 95 (142)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 21
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=49.68 E-value=29 Score=24.47 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=27.6
Q ss_pred EEeeeecc--eeeeeeeecC-ccccchHHHHHHHHHHhhh
Q psy7055 57 VAITQVAN--VLLCLYAKEN-VCFGMLRAKAEALATYLEA 93 (102)
Q Consensus 57 i~i~~Va~--~LLcl~a~~~-v~~GlLk~K~~al~~~Le~ 93 (102)
++|.+... ++.++|-.+. +.-|-.+...+.|++||..
T Consensus 124 v~i~KT~~~aiVI~~y~e~~~~~~g~~~~~ve~ladYL~~ 163 (166)
T 3nec_A 124 AHLIKTPNGSIVIALYDEEKEQDKGNSRTSALAFAEYLHQ 163 (166)
T ss_dssp EEEEECTTSEEEEEEEEGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCEEEEEEccCCCccCHHHHHHHHHHHHHHHHH
Confidence 55555565 5555555543 8999999999999999975
No 22
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=23.27 E-value=73 Score=20.28 Aligned_cols=21 Identities=14% Similarity=0.441 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHhcCcc
Q psy7055 18 GTVIAAITSNIWSAFEKNGRS 38 (102)
Q Consensus 18 a~v~AAiasniW~ay~r~g~~ 38 (102)
...|+.-|+-||++...++.-
T Consensus 3 k~~IG~nAG~VW~~L~~~~~~ 23 (82)
T 2l02_A 3 KKIVGANAGKVWHALNEADGI 23 (82)
T ss_dssp HHHHHHHHHHHHHHHHHCCSB
T ss_pred HHHHHHHHHHHHHHHhccCCC
Confidence 456788899999999988754
No 23
>2pco_A Latarcin-1, LTC-1; continuous helix, toxin; NMR {Synthetic}
Probab=21.31 E-value=65 Score=16.44 Aligned_cols=20 Identities=35% Similarity=0.388 Sum_probs=15.6
Q ss_pred cccchHHHHHHHHHHhhhhh
Q psy7055 76 CFGMLRAKAEALATYLEAPL 95 (102)
Q Consensus 76 ~~GlLk~K~~al~~~Le~pL 95 (102)
-+|++|.|...+.+-|.+-+
T Consensus 3 ~fgk~keklKkf~~~lk~k~ 22 (26)
T 2pco_A 3 WSGMWRRKLKKLRNALKKKL 22 (26)
T ss_dssp SCSCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 37999999998887776544
No 24
>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
Probab=20.23 E-value=1.6e+02 Score=21.16 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=29.0
Q ss_pred eEEeeee-cc-eeeeeeeec-CccccchHHHHHHHHHHhhh
Q psy7055 56 KVAITQV-AN-VLLCLYAKE-NVCFGMLRAKAEALATYLEA 93 (102)
Q Consensus 56 ri~i~~V-a~-~LLcl~a~~-~v~~GlLk~K~~al~~~Le~ 93 (102)
=++|... .. ++.++|-.+ .+.-|--+.-.++|++||..
T Consensus 128 Gv~ivKT~~qaiVIg~YdE~k~~~~g~c~~~ve~LadYL~~ 168 (179)
T 2jkg_A 128 GLHLVKVPGGNILVVLYDEEKEQDRGNSKIAALTFAKELAE 168 (179)
T ss_dssp EEEEEEETTTEEEEEEEEGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHH
Confidence 3556666 33 777777765 38889999999999999975
Done!