RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7055
         (102 letters)



>gnl|CDD|214939 smart00960, Robl_LC7, Roadblock/LC7 domain.  This family includes
          proteins that are about 100 amino acids long and have
          been shown to be related. Members of this family of
          proteins are associated with both flagellar outer arm
          dynein and Drosophila and rat brain cytoplasmic dynein.
          It is proposed that roadblock/LC7 family members may
          modulate specific dynein functions. This family also
          includes Golgi-associated MP1 adapter protein and MglB
          from Myxococcus xanthus, a protein involved in gliding
          motility. However the family also includes members from
          non-motile bacteria such as Streptomyces coelicolor,
          suggesting that the protein may play a structural or
          regulatory role.
          Length = 88

 Score = 46.0 bits (110), Expect = 5e-08
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 1  MSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAIT 60
          +S +G LLA SG  D+D   +AA+ + + S  E+  R    E  L+ + +E   G+V IT
Sbjct: 20 VSRDGLLLASSGLSDDDAERLAALAAGLLSLAERAAR-ELGEGELRQLRIEGEKGEVLIT 78

Query: 61 QVANVLLCL 69
             + LL +
Sbjct: 79 PAGDALLAV 87


>gnl|CDD|217460 pfam03259, Robl_LC7, Roadblock/LC7 domain.  This family includes
          proteins that are about 100 amino acids long and have
          been shown to be related. Members of this family of
          proteins are associated with both flagellar outer arm
          dynein and Drosophila and rat brain cytoplasmic dynein.
          It is proposed that roadblock/LC7 family members may
          modulate specific dynein functions. This family also
          includes Golgi-associated MP1 adapter protein and MglB
          from Myxococcus xanthus, a protein involved in gliding
          motility. However the family also includes members from
          non-motile bacteria such as Streptomyces coelicolor,
          suggesting that the protein may play a structural or
          regulatory role.
          Length = 91

 Score = 41.5 bits (98), Expect = 3e-06
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 4  EGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVA 63
          +G +LA +G  D+D   +AA+ S + SA +   R       L+ +L+E   G++ +T   
Sbjct: 24 DGLVLASTGLDDDDADRLAALASGLLSAAKALAR-DLGGGELRQLLIEGKKGELYLTPAG 82

Query: 64 N-VLLCLYA 71
             LL + A
Sbjct: 83 EGALLVVLA 91


>gnl|CDD|177598 PHA03360, PHA03360, tegument protein; Provisional.
          Length = 442

 Score = 29.1 bits (65), Expect = 0.37
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 15  DNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKV 57
             D  +I AI   +   F+  G+S   +D +   L++CS G V
Sbjct: 326 TLDSCIIKAIICFL--GFKNGGKSFLAQDEVWGDLIDCSKGSV 366


>gnl|CDD|218816 pfam05936, DUF876, Bacterial protein of unknown function (DUF876). 
           This family consists of a series of hypothetical
           bacterial sequences of unknown function.
          Length = 427

 Score = 27.2 bits (61), Expect = 1.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 78  GMLRAKAEALATYLEAPLKQVVNTS 102
           G+LRA+AEALA  L    +Q    +
Sbjct: 190 GLLRARAEALAGRLRGSSQQKFGVA 214


>gnl|CDD|236055 PRK07575, PRK07575, dihydroorotase; Provisional.
          Length = 438

 Score = 25.4 bits (56), Expect = 6.4
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 42  EDSLQMVLMECSNGKVAITQVAN 64
           E SL ++L     GK  + QV  
Sbjct: 327 ETSLPLMLTAAMRGKCTVAQVVR 349


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.128    0.362 

Gapped
Lambda     K      H
   0.267   0.0792    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,813,472
Number of extensions: 373110
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 7
Length of query: 102
Length of database: 10,937,602
Length adjustment: 68
Effective length of query: 34
Effective length of database: 7,921,530
Effective search space: 269332020
Effective search space used: 269332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)