RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7055
         (102 letters)



>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin,
           scaffold, adaptor, signaling protein/protein binding
           complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB:
           2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
          Length = 125

 Score =  119 bits (299), Expect = 1e-36
 Identities = 62/101 (61%), Positives = 80/101 (79%)

Query: 1   MSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAIT 60
           ++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF EDSL+ +LM+C  G+VAIT
Sbjct: 25  LNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAIT 84

Query: 61  QVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQVVNT 101
           +VAN+LLC+YAKE V FGML+AKA+AL  YLE PL QV  +
Sbjct: 85  RVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQVAAS 125


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.6 bits (66), Expect = 0.16
 Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 11  SGHKDNDGTVIAAI--TSNIWSAFEKNGRSAFK 41
           +GH  + G V A     ++ W +F  + R A  
Sbjct: 271 TGH--SQGLVTAVAIAETDSWESFFVSVRKAIT 301


>1hq0_A CNF1, cytotoxic necrotizing factor 1; beta sandwich, RHO deamidase,
           RHO transglutaminase, toxin; 1.83A {Escherichia coli}
           SCOP: d.194.1.1 PDB: 1hzg_A
          Length = 295

 Score = 25.2 bits (54), Expect = 4.5
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 2   SYEGTLLAYSGHKDNDGTVIAAITSNIWSAFE-KNGRSAFKEDSLQMVLMECSNGKVAI 59
           ++E +L+ YS  +    + I  I  N+ S F                 ++   +G V +
Sbjct: 212 NFEDSLITYSSSEKKPDSQITIIRDNV-SVFPYFLDNIPEHGFGTSATVLVRVDGNVVV 269


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.128    0.362 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,441,289
Number of extensions: 70481
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 4
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)