RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7055
         (102 letters)



>d1vetb_ d.110.7.1 (B:) Late endosomal/lysosomal Mp1 interacting
           protein p14 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 118

 Score = 84.1 bits (208), Expect = 3e-23
 Identities = 59/94 (62%), Positives = 76/94 (80%)

Query: 1   MSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAIT 60
           ++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF EDSL+ +LM+C  G+VAIT
Sbjct: 25  LNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAIT 84

Query: 61  QVANVLLCLYAKENVCFGMLRAKAEALATYLEAP 94
           +VAN+LLC+YAKE V FGML+AKA+AL  YLE P
Sbjct: 85  RVANLLLCMYAKETVGFGMLKAKAQALVQYLEEP 118


>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas
          putida [TaxId: 303]}
          Length = 340

 Score = 28.1 bits (62), Expect = 0.14
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 29 WSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANV 65
          W AF+K+ R A   +   + LM  ++      +  N 
Sbjct: 36 WQAFDKSARVASHSEVGVIELMPVADKSRYAFKYVNG 72


>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
            chain {Escherichia coli [TaxId: 562]}
          Length = 1074

 Score = 24.4 bits (52), Expect = 3.7
 Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 2/19 (10%)

Query: 24   ITSNIWSAFEKNGR--SAF 40
            I+S  WS  E      +A 
Sbjct: 1007 ISSPTWSGLEDEHVSYNAG 1025


>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 418

 Score = 23.5 bits (51), Expect = 7.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 7   LLAYSGHKDNDGTVI 21
           L+ Y+G+K  DG+ +
Sbjct: 181 LIRYAGYKQPDGSTL 195


>d1p94a_ a.43.1.3 (A:) Plasmid partition protein ParG {Salmonella
          enterica [TaxId: 28901]}
          Length = 76

 Score = 22.3 bits (47), Expect = 8.3
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 23 AITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKEN 74
           +T+ + S   K     F E+        C+    +IT V N L+  + KEN
Sbjct: 24 VVTAPVSSGKIKRVNVNFDEEKHTRFKAACARKGTSITDVVNQLVDNWLKEN 75


>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 416

 Score = 23.2 bits (50), Expect = 8.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 7   LLAYSGHKDNDGTVI 21
           L+ Y+G++  DG+V 
Sbjct: 184 LVRYAGYRQQDGSVR 198


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.128    0.362 

Gapped
Lambda     K      H
   0.267   0.0483    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 331,910
Number of extensions: 11945
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 11
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)