BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7057
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 114/196 (58%), Gaps = 13/196 (6%)
Query: 52 LLSASWDMTAKLWCLESQQCKLTIRQHEMAVWG--VIQLANGIIVTGCADKTIKLHSEEG 109
++S SWD TAK+W + ++ H +VW V+ + +T ADKTIKL +
Sbjct: 117 VISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND- 173
Query: 110 EFLKTLTG-HTDCVRGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHTMYGHPNFIYSVAA 168
+ +KT +G H D VR LAV++D F+SCSND I++ D TG + T GH +F+Y +
Sbjct: 174 KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKL 233
Query: 169 --HGDLITSGGEDQCVCVYQNK---AQNSFMIPAMSVWAVAILPNSDIVTGSSDGIVRVF 223
+GD++ S GED+ V ++ + + +PA+S+W+V N DI+ GSSD +VR+F
Sbjct: 234 LPNGDIV-SCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRIF 292
Query: 224 SANPDRQA-EDAVQAQ 238
S R A ED ++ +
Sbjct: 293 SQEKSRWASEDEIKGE 308
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 126/249 (50%), Gaps = 29/249 (11%)
Query: 3 KLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKPND-----------------LS 44
+L L GHS VR ++ +PDG I SAS DK+ KLW N S
Sbjct: 89 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 148
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANG-IIVTGCADKTIK 103
P + T+ SAS D T KLW Q + T+ H +VWGV +G I + DKT+K
Sbjct: 149 PDGQ--TIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKTVK 205
Query: 104 LHSEEGEFLKTLTGHTDCVRGLAVLNDTDFV-SCSNDASIRVWDSTTGKCVHTMYGHPNF 162
L + G+ L+TLTGH+ VRG+A D + S S+D ++++W+ G+ + T+ GH +
Sbjct: 206 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS 264
Query: 163 IYSVAAH--GDLITSGGEDQCVCVYQNKAQ--NSFMIPAMSVWAVAILPNSD-IVTGSSD 217
+ VA G I S +D+ V ++ Q + + SVW VA P+ I + S D
Sbjct: 265 VNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 324
Query: 218 GIVRVFSAN 226
V++++ N
Sbjct: 325 KTVKLWNRN 333
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 124/249 (49%), Gaps = 29/249 (11%)
Query: 3 KLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKPND-----------------LS 44
+L L GHS V ++ PDG I SAS DK+ KLW N S
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 312
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANG-IIVTGCADKTIK 103
P + T+ SAS D T KLW Q + T+ H +VWGV +G I + DKT+K
Sbjct: 313 PDGQ--TIASASDDKTVKLWNRNGQHLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKTVK 369
Query: 104 LHSEEGEFLKTLTGHTDCVRGLAVLNDTDFV-SCSNDASIRVWDSTTGKCVHTMYGHPNF 162
L + G+ L+TLTGH+ VRG+A D + S S+D ++++W+ G+ + T+ GH +
Sbjct: 370 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS 428
Query: 163 IYSVAAHGD--LITSGGEDQCVCVYQNKAQ--NSFMIPAMSVWAVAILPNSD-IVTGSSD 217
++ VA D I S +D+ V ++ Q + + SV VA P+ I + S D
Sbjct: 429 VWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 488
Query: 218 GIVRVFSAN 226
V++++ N
Sbjct: 489 KTVKLWNRN 497
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 103/372 (27%), Positives = 167/372 (44%), Gaps = 64/372 (17%)
Query: 3 KLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKPND------LSPGAKVN----- 50
+L L GHS VR ++ +PDG I SAS DK+ KLW N + VN
Sbjct: 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFR 271
Query: 51 ----TLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANG-IIVTGCADKTIKLH 105
T+ SAS D T KLW Q + T+ H +VWGV +G I + DKT+KL
Sbjct: 272 PDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Query: 106 SEEGEFLKTLTGHTDCVRGLAVLNDTDFV-SCSNDASIRVWDSTTGKCVHTMYGHPNFIY 164
+ G+ L+TLTGH+ V G+A D + S S+D ++++W+ G+ + T+ GH + +
Sbjct: 331 NRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVR 389
Query: 165 SVA--AHGDLITSGGEDQCVCVYQNKAQ--NSFMIPAMSVWAVAILPNSD-IVTGSSDGI 219
VA G I S +D+ V ++ Q + + SVW VA P+ I + S D
Sbjct: 390 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT 449
Query: 220 VRVFSANPDRQAEDAVQAQYAEEVKKLKSANEQEIGGVKVSDDGIVRVFSANPDRQAEDA 279
V++++ N ++ + + + + GV S DG + SA+ D+
Sbjct: 450 VKLWNRNG--------------QLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTV--- 491
Query: 280 VQAQYAEEVKKLKSANEQEIGGVKVSDLPGKEVLYEPGKADGDVKMVREGSTVVAYSWSE 339
KL + N Q + + + V + P +G T+ + S +
Sbjct: 492 ----------KLWNRNGQLLQTLTGHSSSVRGVAFSP-----------DGQTIASASDDK 530
Query: 340 ASREWNKLGDVM 351
+ WN+ G ++
Sbjct: 531 TVKLWNRNGQLL 542
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 125/249 (50%), Gaps = 29/249 (11%)
Query: 3 KLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKPND-----------------LS 44
+L L GHS V ++ +PDG I SAS DK+ KLW N S
Sbjct: 130 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 189
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANG-IIVTGCADKTIK 103
P + T+ SAS D T KLW Q + T+ H +V GV +G I + DKT+K
Sbjct: 190 PDGQ--TIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTVK 246
Query: 104 LHSEEGEFLKTLTGHTDCVRGLAVLNDTDFV-SCSNDASIRVWDSTTGKCVHTMYGHPNF 162
L + G+ L+TLTGH+ V G+A D + S S+D ++++W+ G+ + T+ GH +
Sbjct: 247 LWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS 305
Query: 163 IYSVA--AHGDLITSGGEDQCVCVYQNKAQN--SFMIPAMSVWAVAILPNSD-IVTGSSD 217
++ VA G I S +D+ V ++ Q+ + + SVW VA P+ I + S D
Sbjct: 306 VWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDD 365
Query: 218 GIVRVFSAN 226
V++++ N
Sbjct: 366 KTVKLWNRN 374
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 36/227 (15%)
Query: 8 LYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKPNDLSPGAKVNTLLSASWDMTAKLWCL 66
L HS VR ++ +PDG I SAS DK+ KLW N
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------------------------ 47
Query: 67 ESQQCKLTIRQHEMAVWGVIQLANG-IIVTGCADKTIKLHSEEGEFLKTLTGHTDCVRGL 125
Q T+ H +VWGV +G I + DKT+KL + G+ L+TLTGH+ VRG+
Sbjct: 48 ---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 104
Query: 126 AVLNDTDFV-SCSNDASIRVWDSTTGKCVHTMYGHPNFIYSVA--AHGDLITSGGEDQCV 182
A D + S S+D ++++W+ G+ + T+ GH + ++ VA G I S +D+ V
Sbjct: 105 AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 163
Query: 183 CVYQNKAQ--NSFMIPAMSVWAVAILPNSD-IVTGSSDGIVRVFSAN 226
++ Q + + SVW VA P+ I + S D V++++ N
Sbjct: 164 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 210
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 105/205 (51%), Gaps = 26/205 (12%)
Query: 3 KLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKPND-----------------LS 44
+L L GHS VR ++ +PDG I SAS DK+ KLW N S
Sbjct: 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 435
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANG-IIVTGCADKTIK 103
P + T+ SAS D T KLW Q + T+ H +V GV +G I + DKT+K
Sbjct: 436 PDDQ--TIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTVK 492
Query: 104 LHSEEGEFLKTLTGHTDCVRGLAVLNDTDFV-SCSNDASIRVWDSTTGKCVHTMYGHPNF 162
L + G+ L+TLTGH+ VRG+A D + S S+D ++++W+ G+ + T+ GH +
Sbjct: 493 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS 551
Query: 163 IYSVA--AHGDLITSGGEDQCVCVY 185
++ VA G I S D+ V ++
Sbjct: 552 VWGVAFSPDGQTIASASSDKTVKLW 576
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 131/300 (43%), Gaps = 47/300 (15%)
Query: 75 IRQHEMAVWGVIQLANG-IIVTGCADKTIKLHSEEGEFLKTLTGHTDCVRGLAVLNDTDF 133
+ H +V GV +G I + DKT+KL + G+ L+TLTGH+ V G+A D
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 134 V-SCSNDASIRVWDSTTGKCVHTMYGHPNFIYSVA--AHGDLITSGGEDQCVCVYQNKAQ 190
+ S S+D ++++W+ G+ + T+ GH + + VA G I S +D+ V ++ Q
Sbjct: 72 IASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 130
Query: 191 --NSFMIPAMSVWAVAILPNSD-IVTGSSDGIVRVFSANPDRQAEDAVQAQYAEEVKKLK 247
+ + SVW VA P+ I + S D V++++ N ++ +
Sbjct: 131 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--------------QLLQTL 176
Query: 248 SANEQEIGGVKVSDDGIVRVFSANPDRQAEDAVQAQYAEEVKKLKSANEQEIGGVKVSDL 307
+ + + GV S DG + SA+ D+ KL + N Q + +
Sbjct: 177 TGHSSSVWGVAFSPDGQT-IASASDDKTV-------------KLWNRNGQLLQTLTGHSS 222
Query: 308 PGKEVLYEPGKADGDVKMVREGSTVVAYSWSEASREWNKLGDVMGSAGGTQESSGKVLYQ 367
+ V + P +G T+ + S + + WN+ G ++ + G S V ++
Sbjct: 223 SVRGVAFSP-----------DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFR 271
>pdb|3PSP|A Chain A, Crystal Structure Of Pul And Pfu Domain
Length = 425
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 77/116 (66%), Gaps = 5/116 (4%)
Query: 311 EVLYEPGKADGDVKMVRE-GSTVVAYSWSEASREWNKLGDVMGSAGGTQESSGKVLYQGK 369
E+L PG+ +G + +V+ T+ A+ +S +S W K+GDV+G+ G + K+ ++GK
Sbjct: 38 EILQSPGRKEGQIVVVKSPQGTIEAHQFSNSS--WKKVGDVVGA--GATGNDKKIEFEGK 93
Query: 370 EYDFVFSVDIEEGKPPLKLPYNVSEDPWHAAQAFIHTHHLSQMFLEQVANFIMTNS 425
YD+VF VDIE+GKPPLKLP NVS++P+ AA F+ + L + +QV FI+ N+
Sbjct: 94 TYDYVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPMSYRDQVVQFILKNT 149
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 389 PYNVSEDPWH---------AAQAFIHTHHLSQMFLEQVANFIMTNSKSKQGPTE-----Y 434
PY + + P + Q I H S ++V + + + E Y
Sbjct: 36 PYEILQSPGRKEGQIVVVKSPQGTIEAHQFSNSSWKKVGDVVGAGATGNDKKIEFEGKTY 95
Query: 435 DFVFSVDIEEGKPPLKLPYNVSEDPWHAAQAFIHTHHL 472
D+VF VDIE+GKPPLKLP NVS++P+ AA F+ + L
Sbjct: 96 DYVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYEL 133
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 471 HLTSVDIEEGKPPLKLPYNVSEDPWHAAQAFIHTHHLSQMFLEQVANFIMTNS 523
++ VDIE+GKPPLKLP NVS++P+ AA F+ + L + +QV FI+ N+
Sbjct: 97 YVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPMSYRDQVVQFILKNT 149
>pdb|3PST|A Chain A, Crystal Structure Of Pul And Pfu(Mutate) Domain
Length = 425
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 76/116 (65%), Gaps = 5/116 (4%)
Query: 311 EVLYEPGKADGDVKMVRE-GSTVVAYSWSEASREWNKLGDVMGSAGGTQESSGKVLYQGK 369
E+L PG+ +G + +V+ T+ A+ +S +S W K+GDV+G+ G + K+ ++GK
Sbjct: 38 EILQSPGRKEGQIVVVKSPQGTIEAHQFSNSS--WKKVGDVVGA--GATGNDKKIEFEGK 93
Query: 370 EYDFVFSVDIEEGKPPLKLPYNVSEDPWHAAQAFIHTHHLSQMFLEQVANFIMTNS 425
YD+VF VDIE+GKPPLKLP NVS++P+ AA F+ + L + +QV I+ N+
Sbjct: 94 TYDYVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPMSYRDQVVQLILKNT 149
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 389 PYNVSEDPWH---------AAQAFIHTHHLSQMFLEQVANFIMTNSKSKQGPTE-----Y 434
PY + + P + Q I H S ++V + + + E Y
Sbjct: 36 PYEILQSPGRKEGQIVVVKSPQGTIEAHQFSNSSWKKVGDVVGAGATGNDKKIEFEGKTY 95
Query: 435 DFVFSVDIEEGKPPLKLPYNVSEDPWHAAQAFIHTHHL 472
D+VF VDIE+GKPPLKLP NVS++P+ AA F+ + L
Sbjct: 96 DYVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYEL 133
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 471 HLTSVDIEEGKPPLKLPYNVSEDPWHAAQAFIHTHHLSQMFLEQVANFIMTNS 523
++ VDIE+GKPPLKLP NVS++P+ AA F+ + L + +QV I+ N+
Sbjct: 97 YVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPMSYRDQVVQLILKNT 149
>pdb|2K89|A Chain A, Solution Structure Of A Novel Ubiquitin-Binding Domain
From Human Plaa (Pfuc, Gly76-Pro77 Cis Isomer)
pdb|2K8A|A Chain A, Solution Structure Of A Novel Ubiquitin-Binding Domain
From Human Plaa (Pfuc, Gly76-Pro77 Trans Isomer)
pdb|2K8B|B Chain B, Solution Structure Of Plaa Family Ubiquitin Binding Domain
(Pfuc) Cis Isomer In Complex With Ubiquitin
pdb|2K8C|B Chain B, Solution Structure Of Plaa Family Ubiquitin Binding Domain
(Pfuc) Trans Isomer In Complex With Ubiquitin
Length = 80
Score = 95.1 bits (235), Expect = 8e-20, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 55/73 (75%)
Query: 356 GTQESSGKVLYQGKEYDFVFSVDIEEGKPPLKLPYNVSEDPWHAAQAFIHTHHLSQMFLE 415
Q++SGKVLY+GKE+D+VFS+D+ EG P KLPYN S+DPW A F+ + L+ MFL+
Sbjct: 1 ANQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPYNTSDDPWLTAYNFLQKNDLNPMFLD 60
Query: 416 QVANFIMTNSKSK 428
QVA FI+ N+K +
Sbjct: 61 QVAKFIIDNTKGQ 73
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 471 HLTSVDIEEGKPPLKLPYNVSEDPWHAAQAFIHTHHLSQMFLEQVANFIMTNSKSK 526
++ S+D+ EG P KLPYN S+DPW A F+ + L+ MFL+QVA FI+ N+K +
Sbjct: 18 YVFSIDVNEGGPSYKLPYNTSDDPWLTAYNFLQKNDLNPMFLDQVAKFIIDNTKGQ 73
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 141/331 (42%), Gaps = 37/331 (11%)
Query: 50 NTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANGIIVTGCADKTIKL-HSEE 108
N ++S S D T K+W + +C T+ H VW Q+ + II++G D+T+K+ ++E
Sbjct: 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS-QMRDNIIISGSTDRTLKVWNAET 188
Query: 109 GEFLKTLTGHTDCVRGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHTMYGHPNFIYSVAA 168
GE + TL GHT VR + L++ VS S DA++RVWD TG+C+H + GH + V
Sbjct: 189 GECIHTLYGHTSTVRCMH-LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247
Query: 169 HGDLITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILPNSDI--VTGSSDGIVRVFSAN 226
G + SG D V V+ + + V L I V+GS D +RV+
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 307
Query: 227 PDRQAEDAVQAQYAEEVKKLK-----SANEQEIGGVKVSDDGIVRVFSA--NPDRQAEDA 279
Q +LK S N VK+ D + P++
Sbjct: 308 TGNCIHTLTGHQSLTSGMELKDNILVSGNADST--VKIWDIKTGQCLQTLQGPNKHQSAV 365
Query: 280 VQAQYAEEVKKLKSANEQEIGGVKVSDLPGKE-----VLYEPGKADGDVKMVREGSTVVA 334
Q+ + S + G VK+ DL E V E G + G V +R +T
Sbjct: 366 TCLQFNKNFVITSSDD----GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT--- 418
Query: 335 YSWSEASREWNKLGDVMGSAGGTQESSGKVL 365
KL +GS GT+E+ VL
Sbjct: 419 -----------KLVCAVGSRNGTEETKLLVL 438
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 109/244 (44%), Gaps = 29/244 (11%)
Query: 3 KLSTALYGHSMDVRSLSVTPDGCILSASRDKSAKLWKPNDLSPGAKVNTL---------- 52
K L GH+ V S S D I+S S D++ K+W G ++TL
Sbjct: 150 KCLRTLVGHTGGVWS-SQMRDNIIISGSTDRTLKVWNAE---TGECIHTLYGHTSTVRCM 205
Query: 53 -------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANGIIVTGCADKTIKLH 105
+S S D T ++W +E+ QC + H AV +Q +V+G D +K+
Sbjct: 206 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV-RCVQYDGRRVVSGAYDFMVKVW 264
Query: 106 SEEGE-FLKTLTGHTDCVRGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHTMYGHPNFIY 164
E E L TL GHT+ V L + VS S D SIRVWD TG C+HT+ GH +
Sbjct: 265 DPETETCLHTLQGHTNRVYSLQ-FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 323
Query: 165 SVAAHGDLITSGGEDQCVCVYQNKAQNSFMI---PAMSVWAVAILP--NSDIVTGSSDGI 219
+ +++ SG D V ++ K P AV L + ++T S DG
Sbjct: 324 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT 383
Query: 220 VRVF 223
V+++
Sbjct: 384 VKLW 387
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 80/152 (52%), Gaps = 4/152 (2%)
Query: 75 IRQHEMAVWGVIQLANGIIVTGCADKTIKLHSE-EGEFLKTLTGHTDCVRGLAVLNDTDF 133
++ H+ V +Q IV+G D T+K+ S G+ L+TL GHT V + + D
Sbjct: 114 LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS-SQMRDNII 172
Query: 134 VSCSNDASIRVWDSTTGKCVHTMYGHPNFIYSVAAHGDLITSGGEDQCVCVYQNKAQNSF 193
+S S D +++VW++ TG+C+HT+YGH + + + H + SG D + V+ +
Sbjct: 173 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL 232
Query: 194 MIPAMSVWAVAILP--NSDIVTGSSDGIVRVF 223
+ V AV + +V+G+ D +V+V+
Sbjct: 233 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 264
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 113 KTLTGHTDCVRGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHTMYGHPNFIYSVAAHGDL 172
K L GH D V VS S+D +++VW + TGKC+ T+ GH ++S ++
Sbjct: 112 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI 171
Query: 173 ITSGGEDQCVCVYQNKAQNSF--MIPAMSVWAVAILPNSDIVTGSSDGIVRVF 223
I SG D+ + V+ + + S L +V+GS D +RV+
Sbjct: 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 224
>pdb|3L3F|X Chain X, Crystal Structure Of A Pfu-Pul Domain Pair Of
Saccharomyces Cerevisiae Doa1UFD3
Length = 362
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Query: 340 ASREWNKLGDVMGSAGGTQESSGKVLYQGKEYDFVFSVDIEEGKPPLKLPYNVSEDPWHA 399
++ W K+GDV+G+ G + K+ ++GK YD+VF VDIE+GKPPLKLP NVS++P+ A
Sbjct: 3 SNSSWKKVGDVVGA--GATGNDKKIEFEGKTYDYVFDVDIEDGKPPLKLPINVSDNPYTA 60
Query: 400 AQAFIHTHHLSQMFLEQVANFIMTNS 425
A F+ + L + +QV FI+ N+
Sbjct: 61 ADNFLARYELPXSYRDQVVQFILKNT 86
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 471 HLTSVDIEEGKPPLKLPYNVSEDPWHAAQAFIHTHHLSQMFLEQVANFIMTNS 523
++ VDIE+GKPPLKLP NVS++P+ AA F+ + L + +QV FI+ N+
Sbjct: 34 YVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPXSYRDQVVQFILKNT 86
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 434 YDFVFSVDIEEGKPPLKLPYNVSEDPWHAAQAFIHTHHL 472
YD+VF VDIE+GKPPLKLP NVS++P+ AA F+ + L
Sbjct: 32 YDYVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYEL 70
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 121/265 (45%), Gaps = 35/265 (13%)
Query: 4 LSTALYGHSMDVRSLSVTPD--GCILSASRDKSAKLWK--PNDLSPGAKVNTL------- 52
L L GH+ V SL+ + +LSASRDK+ WK +D G V +
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 53 ------------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCAD 99
LSASWD T +LW + + + H+ V V I +I++G D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 100 KTIKLHSEEGEFLKTLTGHTDCVRGLAVL-------NDTDFVSCSNDASIRVWDSTTGKC 152
KTIK+ + +G+ L TL GH D V + V+ + +S ND ++ W+ +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 153 VHTMYGHPNFIYSVAAH--GDLITSGGEDQCVCVYQNKAQNS-FMIPAMS-VWAVAILPN 208
GH + I ++ A G LI S G+D + ++ A+ + + + A V+++A PN
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 209 SDIVTGSSDGIVRVFSANPDRQAED 233
+ ++ ++VFS +P +D
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDD 273
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDGCIL-SASRDKSAKLW 38
+++ GH+ ++ +L+ +PDG ++ SA +D LW
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 121/265 (45%), Gaps = 35/265 (13%)
Query: 4 LSTALYGHSMDVRSLSVTPD--GCILSASRDKSAKLWK--PNDLSPGAKVNTL------- 52
L L GH+ V SL+ + +LSASRDK+ WK +D G V +
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 53 ------------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCAD 99
LSASWD T +LW + + + H+ V V I +I++G D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 100 KTIKLHSEEGEFLKTLTGHTDCVRGLAVL-------NDTDFVSCSNDASIRVWDSTTGKC 152
KTIK+ + +G+ L TL GH D V + V+ + +S ND ++ W+ +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 153 VHTMYGHPNFIYSVAAH--GDLITSGGEDQCVCVYQNKAQNS-FMIPAMS-VWAVAILPN 208
GH + I ++ A G LI S G+D + ++ A+ + + + A V+++A PN
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 209 SDIVTGSSDGIVRVFSANPDRQAED 233
+ ++ ++VFS +P +D
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDD 273
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDGCIL-SASRDKSAKLW 38
+++ GH+ ++ +L+ +PDG ++ SA +D LW
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 121/265 (45%), Gaps = 35/265 (13%)
Query: 4 LSTALYGHSMDVRSLSVTPD--GCILSASRDKSAKLWK--PNDLSPGAKVNTL------- 52
L L GH+ V SL+ + +LSASRDK+ WK +D G V +
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 53 ------------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCAD 99
LSASWD T +LW + + + H+ V V I +I++G D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 100 KTIKLHSEEGEFLKTLTGHTDCVRGLAVL-------NDTDFVSCSNDASIRVWDSTTGKC 152
KTIK+ + +G+ L TL GH D V + V+ + +S ND ++ W+ +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 153 VHTMYGHPNFIYSVAAH--GDLITSGGEDQCVCVYQNKAQNS-FMIPAMS-VWAVAILPN 208
GH + I ++ A G LI S G+D + ++ A+ + + + A V+++A PN
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 209 SDIVTGSSDGIVRVFSANPDRQAED 233
+ ++ ++VFS +P +D
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDD 273
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDGCIL-SASRDKSAKLW 38
+++ GH+ ++ +L+ +PDG ++ SA +D LW
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 121/265 (45%), Gaps = 35/265 (13%)
Query: 4 LSTALYGHSMDVRSLSVTPD--GCILSASRDKSAKLWK--PNDLSPGAKVNTL------- 52
L L GH+ V SL+ + +LSASRDK+ WK +D G V +
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 53 ------------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCAD 99
LSASWD T +LW + + + H+ V V I +I++G D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 100 KTIKLHSEEGEFLKTLTGHTDCVRGLAVL-------NDTDFVSCSNDASIRVWDSTTGKC 152
KTIK+ + +G+ L TL GH D V + V+ + +S ND ++ W+ +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 153 VHTMYGHPNFIYSVAAH--GDLITSGGEDQCVCVYQNKAQNS-FMIPAMS-VWAVAILPN 208
GH + I ++ A G LI S G+D + ++ A+ + + + A V+++A PN
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 209 SDIVTGSSDGIVRVFSANPDRQAED 233
+ ++ ++VFS +P +D
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDD 273
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDGCIL-SASRDKSAKLW 38
+++ GH+ ++ +L+ +PDG ++ SA +D LW
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 121/265 (45%), Gaps = 35/265 (13%)
Query: 4 LSTALYGHSMDVRSLSVTPD--GCILSASRDKSAKLWK--PNDLSPGAKVNTL------- 52
L L GH+ V SL+ + +LSASRDK+ WK +D G V +
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 53 ------------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCAD 99
LSASWD T +LW + + + H+ V V I +I++G D
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 122
Query: 100 KTIKLHSEEGEFLKTLTGHTDCVRGLAVL-------NDTDFVSCSNDASIRVWDSTTGKC 152
KTIK+ + +G+ L TL GH D V + V+ + +S ND ++ W+ +
Sbjct: 123 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 182
Query: 153 VHTMYGHPNFIYSVAAH--GDLITSGGEDQCVCVYQNKAQNS-FMIPAMS-VWAVAILPN 208
GH + I ++ A G LI S G+D + ++ A+ + + + A V+++A PN
Sbjct: 183 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 242
Query: 209 SDIVTGSSDGIVRVFSANPDRQAED 233
+ ++ ++VFS +P +D
Sbjct: 243 RYWLAAATATGIKVFSLDPQYLVDD 267
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDGCIL-SASRDKSAKLW 38
+++ GH+ ++ +L+ +PDG ++ SA +D LW
Sbjct: 180 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 120/265 (45%), Gaps = 35/265 (13%)
Query: 4 LSTALYGHSMDVRSLSVTPD--GCILSASRDKSAKLWK--PNDLSPGAKVNTL------- 52
L L GH+ V SL+ + +LSASRDK+ WK +D G V +
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 53 ------------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCAD 99
LSASWD T +LW + + + H+ V V I I++G D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRD 128
Query: 100 KTIKLHSEEGEFLKTLTGHTDCVRGLAVL-------NDTDFVSCSNDASIRVWDSTTGKC 152
KTIK+ + +G+ L TL GH D V + V+ + +S ND ++ W+ +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI 188
Query: 153 VHTMYGHPNFIYSVAAH--GDLITSGGEDQCVCVYQNKAQNS-FMIPAMS-VWAVAILPN 208
GH + I ++ A G LI S G+D + ++ A+ + + + A V+++A PN
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPN 248
Query: 209 SDIVTGSSDGIVRVFSANPDRQAED 233
+ ++ ++VFS +P +D
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDD 273
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDGCIL-SASRDKSAKLW 38
+++ GH+ ++ +L+ +PDG ++ SA +D LW
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 137/307 (44%), Gaps = 45/307 (14%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKP----------------NDLS 44
Y L L GH+ V S+ +P+G + S+S DK K+W +D++
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIK 103
+ N L+SAS D T K+W + S +C T++ H V+ + +IV+G D++++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 104 LHS-EEGEFLKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHTMYG--- 158
+ + G+ LKTL H+D V + D VS S D R+WD+ +G+C+ T+
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 159 --------HPNFIYSVAAHGD---LITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILP 207
PN Y +AA D + + +C+ Y + I A ++
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTG 251
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQAQYAEEVKKLKSA---NEQEIGGVKVSDDGI 264
IV+GS D +V ++ + Q ++ VQ + +A E I + +D
Sbjct: 252 GKWIVSGSEDNLVYIW----NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 307
Query: 265 VRVFSAN 271
+++F ++
Sbjct: 308 IKLFKSD 314
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 90/161 (55%), Gaps = 9/161 (5%)
Query: 72 KLTIRQHEMAVWGVIQLANG-IIVTGCADKTIKL-HSEEGEFLKTLTGHTDCVRGLAVLN 129
K T+ H AV V NG + + ADK IK+ + +G+F KT++GH + +A +
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 97
Query: 130 DTDF-VSCSNDASIRVWDSTTGKCVHTMYGHPNFIY--SVAAHGDLITSGGEDQCVCVYQ 186
D++ VS S+D ++++WD ++GKC+ T+ GH N+++ + +LI SG D+ V ++
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 187 NKAQNSF-MIPAMSVWAVAILPNSD---IVTGSSDGIVRVF 223
K +PA S A+ N D IV+ S DG+ R++
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 42/269 (15%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKP----------------NDLS 44
Y L L GH+ V S+ +P+G + S+S DK K+W +D++
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIK 103
+ N L+SAS D T K+W + S +C T++ H V+ + +IV+G D++++
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 104 LHS-EEGEFLKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHTMYG--- 158
+ + G+ LKTL H+D V + D VS S D R+WD+ +G+C+ T+
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214
Query: 159 --------HPNFIYSVAAHGD---LITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILP 207
PN Y +AA D + + +C+ Y + I A ++
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTG 270
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQ 236
IV+GS D +V ++ + Q ++ VQ
Sbjct: 271 GKWIVSGSEDNLVYIW----NLQTKEIVQ 295
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 3 KLSTALYGHSMDVRSLSVTP-DGCILSASRDKSAKLWKPNDLSPGAKVNTL--------- 52
K L GHS V + P I+S S D+S ++W D+ G + TL
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW---DVKTGKCLKTLPAHSDPVSA 176
Query: 53 ----------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLA-NG-IIVTGCADK 100
+S+S+D ++W S QC T+ + ++ + NG I+ D
Sbjct: 177 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 236
Query: 101 TIKLHS-EEGEFLKTLTGHTD---CV-RGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHT 155
T+KL +G+ LKT TGH + C+ +V VS S D + +W+ T + V
Sbjct: 237 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 296
Query: 156 MYGHPNFIYSVAAH 169
+ GH + + S A H
Sbjct: 297 LQGHTDVVISTACH 310
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 90/161 (55%), Gaps = 9/161 (5%)
Query: 72 KLTIRQHEMAVWGVIQLANG-IIVTGCADKTIKL-HSEEGEFLKTLTGHTDCVRGLAVLN 129
K T+ H AV V NG + + ADK IK+ + +G+F KT++GH + +A +
Sbjct: 40 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 99
Query: 130 DTDF-VSCSNDASIRVWDSTTGKCVHTMYGHPNFIY--SVAAHGDLITSGGEDQCVCVYQ 186
D++ VS S+D ++++WD ++GKC+ T+ GH N+++ + +LI SG D+ V ++
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Query: 187 NKAQNSF-MIPAMSVWAVAILPNSD---IVTGSSDGIVRVF 223
K +PA S A+ N D IV+ S DG+ R++
Sbjct: 160 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 42/269 (15%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKP----------------NDLS 44
Y L L GH+ V S+ +P+G + S+S DK K+W +D++
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 96
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIK 103
+ N L+SAS D T K+W + S +C T++ H V+ + +IV+G D++++
Sbjct: 97 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 156
Query: 104 LHS-EEGEFLKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHTMYG--- 158
+ + G+ LKTL H+D V + D VS S D R+WD+ +G+C+ T+
Sbjct: 157 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 216
Query: 159 --------HPNFIYSVAAHGD---LITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILP 207
PN Y +AA D + + +C+ Y + I A ++
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTG 272
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQ 236
IV+GS D +V ++ + Q ++ VQ
Sbjct: 273 GKWIVSGSEDNLVYIW----NLQTKEIVQ 297
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 3 KLSTALYGHSMDVRSLSVTP-DGCILSASRDKSAKLWKPNDLSPGAKVNTL--------- 52
K L GHS V + P I+S S D+S ++W D+ G + TL
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW---DVKTGKCLKTLPAHSDPVSA 178
Query: 53 ----------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLA-NG-IIVTGCADK 100
+S+S+D ++W S QC T+ + ++ + NG I+ D
Sbjct: 179 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 238
Query: 101 TIKLHS-EEGEFLKTLTGHTD---CV-RGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHT 155
T+KL +G+ LKT TGH + C+ +V VS S D + +W+ T + V
Sbjct: 239 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 298
Query: 156 MYGHPNFIYSVAAH 169
+ GH + + S A H
Sbjct: 299 LQGHTDVVISTACH 312
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 42/269 (15%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKP----------------NDLS 44
Y L L GH+ V S+ +P+G + S+S DK K+W +D++
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIK 103
+ N L+SAS D T K+W + S +C T++ H V+ + +IV+G D++++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 104 LHS-EEGEFLKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHTMYG--- 158
+ + G+ LKTL H+D V + D VS S D R+WD+ +G+C+ T+
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 159 --------HPNFIYSVAAHGD---LITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILP 207
PN Y +AA D + + +C+ Y + I A ++
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTG 254
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQ 236
IV+GS D +V ++ + Q ++ VQ
Sbjct: 255 GKWIVSGSEDNLVYIW----NLQTKEIVQ 279
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 3 KLSTALYGHSMDVRSLSVTP-DGCILSASRDKSAKLWKPNDLSPGAKVNTL--------- 52
K L GHS V + P I+S S D+S ++W D+ G + TL
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW---DVKTGKCLKTLPAHSDPVSA 160
Query: 53 ----------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLA-NG-IIVTGCADK 100
+S+S+D ++W S QC T+ + ++ + NG I+ D
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 101 TIKLHS-EEGEFLKTLTGHTD---CV-RGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHT 155
T+KL +G+ LKT TGH + C+ +V VS S D + +W+ T + V
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 156 MYGHPNFIYSVAAH 169
+ GH + + S A H
Sbjct: 281 LQGHTDVVISTACH 294
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 42/269 (15%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKP----------------NDLS 44
Y L L GH+ V S+ +P+G + S+S DK K+W +D++
Sbjct: 30 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 89
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIK 103
+ N L+SAS D T K+W + S +C T++ H V+ + +IV+G D++++
Sbjct: 90 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 149
Query: 104 LHS-EEGEFLKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHTMYG--- 158
+ + G+ LKTL H+D V + D VS S D R+WD+ +G+C+ T+
Sbjct: 150 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 209
Query: 159 --------HPNFIYSVAAHGD---LITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILP 207
PN Y +AA D + + +C+ Y + I A ++
Sbjct: 210 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTG 265
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQ 236
IV+GS D +V ++ + Q ++ VQ
Sbjct: 266 GKWIVSGSEDNLVYIW----NLQTKEIVQ 290
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 3 KLSTALYGHSMDVRSLSVTP-DGCILSASRDKSAKLWKPNDLSPGAKVNTL--------- 52
K L GHS V + P I+S S D+S ++W D+ G + TL
Sbjct: 115 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW---DVKTGKCLKTLPAHSDPVSA 171
Query: 53 ----------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLA-NG-IIVTGCADK 100
+S+S+D ++W S QC T+ + ++ + NG I+ D
Sbjct: 172 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 231
Query: 101 TIKLHS-EEGEFLKTLTGHTD---CV-RGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHT 155
T+KL +G+ LKT TGH + C+ +V VS S D + +W+ T + V
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 291
Query: 156 MYGHPNFIYSVAAH 169
+ GH + + S A H
Sbjct: 292 LQGHTDVVISTACH 305
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 90/161 (55%), Gaps = 9/161 (5%)
Query: 72 KLTIRQHEMAVWGVIQLANG-IIVTGCADKTIKL-HSEEGEFLKTLTGHTDCVRGLAVLN 129
K T+ H AV V NG + + ADK IK+ + +G+F KT++GH + +A +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 130 DTDF-VSCSNDASIRVWDSTTGKCVHTMYGHPNFIY--SVAAHGDLITSGGEDQCVCVYQ 186
D++ VS S+D ++++WD ++GKC+ T+ GH N+++ + +LI SG D+ V ++
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 187 NKAQNSF-MIPAMSVWAVAILPNSD---IVTGSSDGIVRVF 223
K +PA S A+ N D IV+ S DG+ R++
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 42/269 (15%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKP----------------NDLS 44
Y L L GH+ V S+ +P+G + S+S DK K+W +D++
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIK 103
+ N L+SAS D T K+W + S +C T++ H V+ + +IV+G D++++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 104 LHS-EEGEFLKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHTMYG--- 158
+ + G+ LKTL H+D V + D VS S D R+WD+ +G+C+ T+
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 159 --------HPNFIYSVAAHGD---LITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILP 207
PN Y +AA D + + +C+ Y + I A ++
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTG 254
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQ 236
IV+GS D +V ++ + Q ++ VQ
Sbjct: 255 GKWIVSGSEDNLVYIW----NLQTKEIVQ 279
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 3 KLSTALYGHSMDVRSLSVTP-DGCILSASRDKSAKLWKPNDLSPGAKVNTL--------- 52
K L GHS V + P I+S S D+S ++W D+ G + TL
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW---DVKTGKCLKTLPAHSDPVSA 160
Query: 53 ----------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLA-NG-IIVTGCADK 100
+S+S+D ++W S QC T+ + ++ + NG I+ D
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 101 TIKLHS-EEGEFLKTLTGHTD---CV-RGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHT 155
T+KL +G+ LKT TGH + C+ +V VS S D + +W+ T + V
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 156 MYGHPNFIYSVAAH 169
+ GH + + S A H
Sbjct: 281 LQGHTDVVISTACH 294
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 42/269 (15%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKP----------------NDLS 44
Y L L GH+ V S+ +P+G + S+S DK K+W +D++
Sbjct: 18 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 77
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIK 103
+ N L+SAS D T K+W + S +C T++ H V+ + +IV+G D++++
Sbjct: 78 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 137
Query: 104 LHS-EEGEFLKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHTMYG--- 158
+ + G+ LKTL H+D V + D VS S D R+WD+ +G+C+ T+
Sbjct: 138 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 197
Query: 159 --------HPNFIYSVAAHGD---LITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILP 207
PN Y +AA D + + +C+ Y + I A ++
Sbjct: 198 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTG 253
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQ 236
IV+GS D +V ++ + Q ++ VQ
Sbjct: 254 GKWIVSGSEDNLVYIW----NLQTKEIVQ 278
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 3 KLSTALYGHSMDVRSLSVTP-DGCILSASRDKSAKLWKPNDLSPGAKVNTL--------- 52
K L GHS V + P I+S S D+S ++W D+ G + TL
Sbjct: 103 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW---DVKTGKCLKTLPAHSDPVSA 159
Query: 53 ----------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLA-NG-IIVTGCADK 100
+S+S+D ++W S QC T+ + ++ + NG I+ D
Sbjct: 160 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 219
Query: 101 TIKLHS-EEGEFLKTLTGHTD---CV-RGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHT 155
T+KL +G+ LKT TGH + C+ +V VS S D + +W+ T + V
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 279
Query: 156 MYGHPNFIYSVAAH 169
+ GH + + S A H
Sbjct: 280 LQGHTDVVISTACH 293
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 137/307 (44%), Gaps = 45/307 (14%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKP----------------NDLS 44
Y L L GH+ V S+ +P+G + S+S DK K+W +D++
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIK 103
+ N L+SAS D T K+W + S +C T++ H V+ + +IV+G D++++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 104 LHS-EEGEFLKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHTMYG--- 158
+ + G+ LKTL H+D V + D VS S D R+WD+ +G+C+ T+
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 159 --------HPNFIYSVAAHGD---LITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILP 207
PN Y +AA D + + +C+ Y + I A ++
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTG 251
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQAQYAEEVKKLKSA---NEQEIGGVKVSDDGI 264
IV+GS D +V ++ + Q ++ VQ + +A E I + +D
Sbjct: 252 GKWIVSGSEDNLVYIW----NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 307
Query: 265 VRVFSAN 271
++++ ++
Sbjct: 308 IKLYKSD 314
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 123/269 (45%), Gaps = 42/269 (15%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDGCILSASR-DKSAKLWKP----------------NDLS 44
Y L L GH+ V S+ +P+G L+AS DK K+W +D++
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIK 103
+ N L+SAS D T K+W + S +C T++ H V+ + +IV+G D++++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 104 LHS-EEGEFLKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHTMYG--- 158
+ + G+ LKTL H+D V + D VS S D R+WD+ +G+C+ T+
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 159 --------HPNFIYSVAAHGD---LITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILP 207
PN Y +AA D + + +C+ Y + I A ++
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTG 251
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQ 236
IV+GS D +V ++ + Q ++ VQ
Sbjct: 252 GKWIVSGSEDNLVYIW----NLQTKEIVQ 276
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 3 KLSTALYGHSMDVRSLSVTP-DGCILSASRDKSAKLWKPNDLSPGAKVNTL--------- 52
K L GHS V + P I+S S D+S ++W D+ G + TL
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW---DVKTGKCLKTLPAHSDPVSA 157
Query: 53 ----------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLA-NG-IIVTGCADK 100
+S+S+D ++W S QC T+ + ++ + NG I+ D
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 101 TIKLHS-EEGEFLKTLTGHTD---CV-RGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHT 155
T+KL +G+ LKT TGH + C+ +V VS S D + +W+ T + V
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 156 MYGHPNFIYSVAAH 169
+ GH + + S A H
Sbjct: 278 LQGHTDVVISTACH 291
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 90/161 (55%), Gaps = 9/161 (5%)
Query: 72 KLTIRQHEMAVWGVIQLANG-IIVTGCADKTIKL-HSEEGEFLKTLTGHTDCVRGLAVLN 129
K T+ H AV V NG + + ADK IK+ + +G+F KT++GH + +A +
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 130 DTDF-VSCSNDASIRVWDSTTGKCVHTMYGHPNFIY--SVAAHGDLITSGGEDQCVCVYQ 186
D++ VS S+D ++++WD ++GKC+ T+ GH N+++ + +LI SG D+ V ++
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 187 NKAQNSF-MIPAMSVWAVAILPNSD---IVTGSSDGIVRVF 223
K +PA S A+ N D IV+ S DG+ R++
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 42/269 (15%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKP----------------NDLS 44
Y L L GH+ V S+ +P+G + S+S DK K+W +D++
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIK 103
+ N L+SAS D T K+W + S +C T++ H V+ + +IV+G D++++
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 104 LHS-EEGEFLKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHTMYG--- 158
+ + G+ LKTL H+D V + D VS S D R+WD+ +G+C+ T+
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 159 --------HPNFIYSVAAHGD---LITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILP 207
PN Y +AA D + + +C+ Y + I A ++
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTG 248
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQ 236
IV+GS D +V ++ + Q ++ VQ
Sbjct: 249 GKWIVSGSEDNLVYIW----NLQTKEIVQ 273
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 3 KLSTALYGHSMDVRSLSVTP-DGCILSASRDKSAKLWKPNDLSPGAKVNTL--------- 52
K L GHS V + P I+S S D+S ++W D+ G + TL
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW---DVKTGKCLKTLPAHSDPVSA 154
Query: 53 ----------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLA-NG-IIVTGCADK 100
+S+S+D ++W S QC T+ + ++ + NG I+ D
Sbjct: 155 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 101 TIKLHS-EEGEFLKTLTGHTD---CV-RGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHT 155
T+KL +G+ LKT TGH + C+ +V VS S D + +W+ T + V
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 156 MYGHPNFIYSVAAH 169
+ GH + + S A H
Sbjct: 275 LQGHTDVVISTACH 288
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 90/161 (55%), Gaps = 9/161 (5%)
Query: 72 KLTIRQHEMAVWGVIQLANG-IIVTGCADKTIKL-HSEEGEFLKTLTGHTDCVRGLAVLN 129
K T+ H AV V NG + + ADK IK+ + +G+F KT++GH + +A +
Sbjct: 17 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 76
Query: 130 DTDF-VSCSNDASIRVWDSTTGKCVHTMYGHPNFIY--SVAAHGDLITSGGEDQCVCVYQ 186
D++ VS S+D ++++WD ++GKC+ T+ GH N+++ + +LI SG D+ V ++
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 187 NKAQNSF-MIPAMSVWAVAILPNSD---IVTGSSDGIVRVF 223
K +PA S A+ N D IV+ S DG+ R++
Sbjct: 137 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 42/269 (15%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKP----------------NDLS 44
Y L L GH+ V S+ +P+G + S+S DK K+W +D++
Sbjct: 14 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 73
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIK 103
+ N L+SAS D T K+W + S +C T++ H V+ + +IV+G D++++
Sbjct: 74 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 133
Query: 104 LHS-EEGEFLKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHTMYG--- 158
+ + G+ LKTL H+D V + D VS S D R+WD+ +G+C+ T+
Sbjct: 134 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 193
Query: 159 --------HPNFIYSVAAHGD---LITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILP 207
PN Y +AA D + + +C+ Y + I A ++
Sbjct: 194 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTG 249
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQ 236
IV+GS D +V ++ + Q ++ VQ
Sbjct: 250 GKWIVSGSEDNLVYIW----NLQTKEIVQ 274
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 3 KLSTALYGHSMDVRSLSVTP-DGCILSASRDKSAKLWKPNDLSPGAKVNTL--------- 52
K L GHS V + P I+S S D+S ++W D+ G + TL
Sbjct: 99 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW---DVKTGKCLKTLPAHSDPVSA 155
Query: 53 ----------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLA-NG-IIVTGCADK 100
+S+S+D ++W S QC T+ + ++ + NG I+ D
Sbjct: 156 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 215
Query: 101 TIKLHS-EEGEFLKTLTGHTD---CV-RGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHT 155
T+KL +G+ LKT TGH + C+ +V VS S D + +W+ T + V
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 275
Query: 156 MYGHPNFIYSVAAH 169
+ GH + + S A H
Sbjct: 276 LQGHTDVVISTACH 289
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 90/161 (55%), Gaps = 9/161 (5%)
Query: 72 KLTIRQHEMAVWGVIQLANG-IIVTGCADKTIKL-HSEEGEFLKTLTGHTDCVRGLAVLN 129
K T+ H AV V NG + + ADK IK+ + +G+F KT++GH + +A +
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 130 DTDF-VSCSNDASIRVWDSTTGKCVHTMYGHPNFIY--SVAAHGDLITSGGEDQCVCVYQ 186
D++ VS S+D ++++WD ++GKC+ T+ GH N+++ + +LI SG D+ V ++
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 187 NKAQNSF-MIPAMSVWAVAILPNSD---IVTGSSDGIVRVF 223
K +PA S A+ N D IV+ S DG+ R++
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 42/269 (15%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKP----------------NDLS 44
Y L L GH+ V S+ +P+G + S+S DK K+W +D++
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIK 103
+ N L+SAS D T K+W + S +C T++ H V+ + +IV+G D++++
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 104 LHS-EEGEFLKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHTMYG--- 158
+ + G+ LKTL H+D V + D VS S D R+WD+ +G+C+ T+
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 159 --------HPNFIYSVAAHGD---LITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILP 207
PN Y +AA D + + +C+ Y + I A ++
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTG 248
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQ 236
IV+GS D +V ++ + Q ++ VQ
Sbjct: 249 GKWIVSGSEDNLVYIW----NLQTKEIVQ 273
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 3 KLSTALYGHSMDVRSLSVTP-DGCILSASRDKSAKLWKPNDLSPGAKVNTL--------- 52
K L GHS V + P I+S S D+S ++W D+ G + TL
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW---DVKTGKCLKTLPAHSDPVSA 154
Query: 53 ----------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLA-NG-IIVTGCADK 100
+S+S+D ++W S QC T+ + ++ + NG I+ D
Sbjct: 155 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 101 TIKLHS-EEGEFLKTLTGHTD---CV-RGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHT 155
T+KL +G+ LKT TGH + C+ +V VS S D + +W+ T + V
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 156 MYGHPNFIYSVAAH 169
+ GH + + S A H
Sbjct: 275 LQGHTDVVISTACH 288
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 90/161 (55%), Gaps = 9/161 (5%)
Query: 72 KLTIRQHEMAVWGVIQLANG-IIVTGCADKTIKL-HSEEGEFLKTLTGHTDCVRGLAVLN 129
K T+ H AV V NG + + ADK IK+ + +G+F KT++GH + +A +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 130 DTDF-VSCSNDASIRVWDSTTGKCVHTMYGHPNFIY--SVAAHGDLITSGGEDQCVCVYQ 186
D++ VS S+D ++++WD ++GKC+ T+ GH N+++ + +LI SG D+ V ++
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 187 NKAQNSF-MIPAMSVWAVAILPNSD---IVTGSSDGIVRVF 223
K +PA S A+ N D IV+ S DG+ R++
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 42/269 (15%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKP----------------NDLS 44
Y L L GH+ V S+ +P+G + S+S DK K+W +D++
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIK 103
+ N L+SAS D T K+W + S +C T++ H V+ + +IV+G D++++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 104 LHS-EEGEFLKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHTMYG--- 158
+ + G+ LKTL H+D V + D VS S D R+WD+ +G+C+ T+
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 159 --------HPNFIYSVAAHGD---LITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILP 207
PN Y +AA D + + +C+ Y + I A ++
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTG 254
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQ 236
IV+GS D +V ++ + Q ++ VQ
Sbjct: 255 GKWIVSGSEDNLVYIW----NLQTKEIVQ 279
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 3 KLSTALYGHSMDVRSLSVTP-DGCILSASRDKSAKLWKPNDLSPGAKVNTL--------- 52
K L GHS V + P I+S S D+S ++W D+ G + TL
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW---DVKTGKCLKTLPAHSDPVSA 160
Query: 53 ----------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLA-NG-IIVTGCADK 100
+S+S+D ++W S QC T+ + ++ + NG I+ D
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 101 TIKLHS-EEGEFLKTLTGHTD---CV-RGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHT 155
T+KL +G+ LKT TGH + C+ +V VS S D + +W+ T + V
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 156 MYGHPNFIYSVAAH 169
+ GH + + S A H
Sbjct: 281 LQGHTDVVISTACH 294
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 90/161 (55%), Gaps = 9/161 (5%)
Query: 72 KLTIRQHEMAVWGVIQLANG-IIVTGCADKTIKLH-SEEGEFLKTLTGHTDCVRGLAVLN 129
K T+ H AV V NG + + ADK IK+ + +G+F KT++GH + +A +
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 71
Query: 130 DTDF-VSCSNDASIRVWDSTTGKCVHTMYGHPNFIY--SVAAHGDLITSGGEDQCVCVYQ 186
D++ VS S+D ++++WD ++GKC+ T+ GH N+++ + +LI SG D+ V ++
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 187 NKAQNSF-MIPAMSVWAVAILPNSD---IVTGSSDGIVRVF 223
K +PA S A+ N D IV+ S DG+ R++
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 42/269 (15%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKP----------------NDLS 44
Y L L GH+ V S+ +P+G + S+S DK K+W +D++
Sbjct: 9 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 68
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIK 103
+ N L+SAS D T K+W + S +C T++ H V+ + +IV+G D++++
Sbjct: 69 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 128
Query: 104 LHS-EEGEFLKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHTMYG--- 158
+ + G+ LKTL H+D V + D VS S D R+WD+ +G+C+ T+
Sbjct: 129 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 188
Query: 159 --------HPNFIYSVAAHGD---LITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILP 207
PN Y +AA D + + +C+ Y + I A ++
Sbjct: 189 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTG 244
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQ 236
IV+GS D +V ++ + Q ++ VQ
Sbjct: 245 GKWIVSGSEDNLVYIW----NLQTKEIVQ 269
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 3 KLSTALYGHSMDVRSLSVTP-DGCILSASRDKSAKLWKPNDLSPGAKVNTL--------- 52
K L GHS V + P I+S S D+S ++W D+ G + TL
Sbjct: 94 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW---DVKTGKCLKTLPAHSDPVSA 150
Query: 53 ----------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLA-NG-IIVTGCADK 100
+S+S+D ++W S QC T+ + ++ + NG I+ D
Sbjct: 151 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 210
Query: 101 TIKLHS-EEGEFLKTLTGHTD---CV-RGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHT 155
T+KL +G+ LKT TGH + C+ +V VS S D + +W+ T + V
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 270
Query: 156 MYGHPNFIYSVAAH 169
+ GH + + S A H
Sbjct: 271 LQGHTDVVISTACH 284
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 120/276 (43%), Gaps = 40/276 (14%)
Query: 8 LYGHSMDVRSLSV--TPDGC--ILSASRDKSAKLWKPN---------------------- 41
L GH V SL+ TP+ ++S SRDK+ W PN
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 42 ---DLSPGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGC 97
D++ N +SASWD + +LW L++ QC+ H V V N IV+G
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 98 ADKTIKLHSEEGEFLKTLT--GHTD---CVRGLAVLNDTDFVSCSNDASIRVWDSTTGKC 152
D +++ + +GE + TL+ HTD CVR L+ VS D ++VWD TG+
Sbjct: 129 RDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRL 188
Query: 153 VHTMYGHPNFIYSVAAH--GDLITSGGEDQCVCVYQNKAQNSF--MIPAMSVWAVAILPN 208
V + GH N++ SV G L S +D ++ + M + + PN
Sbjct: 189 VTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPN 248
Query: 209 SDIVTGSSDGIVRVFSA-NPDRQAEDAVQAQYAEEV 243
+ +++ +R+F N D E A + Q ++++
Sbjct: 249 RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKI 284
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 3 KLSTALYGHSMDVRSLSVTPDGCILSAS-RDKSAKLWKPNDLSPGAKVNTLLSAS 56
+L T L GH+ V S++V+PDG + ++S +D A+LW DL+ G ++ + + +
Sbjct: 187 RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW---DLTKGEALSEMAAGA 238
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 90/161 (55%), Gaps = 9/161 (5%)
Query: 72 KLTIRQHEMAVWGVIQLANG-IIVTGCADKTIKL-HSEEGEFLKTLTGHTDCVRGLAVLN 129
K T+ H AV V NG + + ADK IK+ + +G+F KT++GH + +A +
Sbjct: 15 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 74
Query: 130 DTDF-VSCSNDASIRVWDSTTGKCVHTMYGHPNFIY--SVAAHGDLITSGGEDQCVCVYQ 186
D++ VS S+D ++++WD ++GKC+ T+ GH N+++ + +LI SG D+ V ++
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 187 NKAQNSF-MIPAMSVWAVAILPNSD---IVTGSSDGIVRVF 223
K +PA S A+ N D IV+ S DG+ R++
Sbjct: 135 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 42/269 (15%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKP----------------NDLS 44
Y L L GH+ V S+ +P+G + S+S DK K+W +D++
Sbjct: 12 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 71
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIK 103
+ N L+SAS D T K+W + S +C T++ H V+ + +IV+G D++++
Sbjct: 72 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 131
Query: 104 LHS-EEGEFLKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHTMYG--- 158
+ + G+ LKTL H+D V + D VS S D R+WD+ +G+C+ T+
Sbjct: 132 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 191
Query: 159 --------HPNFIYSVAAHGD---LITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILP 207
PN Y +AA D + + +C+ Y + I A ++
Sbjct: 192 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTG 247
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQ 236
IV+GS D +V ++ + Q ++ VQ
Sbjct: 248 GKWIVSGSEDNLVYIW----NLQTKEIVQ 272
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 3 KLSTALYGHSMDVRSLSVTP-DGCILSASRDKSAKLWKPNDLSPGAKVNTL--------- 52
K L GHS V + P I+S S D+S ++W D+ G + TL
Sbjct: 97 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW---DVKTGKCLKTLPAHSDPVSA 153
Query: 53 ----------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLA-NG-IIVTGCADK 100
+S+S+D ++W S QC T+ + ++ + NG I+ D
Sbjct: 154 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 213
Query: 101 TIKLHS-EEGEFLKTLTGHTD---CV-RGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHT 155
T+KL +G+ LKT TGH + C+ +V VS S D + +W+ T + V
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 273
Query: 156 MYGHPNFIYSVAAH 169
+ GH + + S A H
Sbjct: 274 LQGHTDVVISTACH 287
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 122/269 (45%), Gaps = 42/269 (15%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKP----------------NDLS 44
Y L L GH+ V S+ +P+G + S+S DK K+W +D++
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIK 103
+ N L+SAS D T K+W + S +C T++ H V+ + +IV+G D++++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 104 LHS-EEGEFLKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHTMYG--- 158
+ + G LKTL H+D V + D VS S D R+WD+ +G+C+ T+
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 159 --------HPNFIYSVAAHGD---LITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILP 207
PN Y +AA D + + +C+ Y + I A ++
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTG 251
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQ 236
IV+GS D +V ++ + Q ++ VQ
Sbjct: 252 GKWIVSGSEDNMVYIW----NLQTKEIVQ 276
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 30/194 (15%)
Query: 3 KLSTALYGHSMDVRSLSVTP-DGCILSASRDKSAKLWKPNDLSPGAKVNTL--------- 52
K L GHS V + P I+S S D+S ++W D+ G + TL
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW---DVKTGMCLKTLPAHSDPVSA 157
Query: 53 ----------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLA-NG-IIVTGCADK 100
+S+S+D ++W S QC T+ + ++ + NG I+ D
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 101 TIKLHS-EEGEFLKTLTGHTD---CV-RGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHT 155
+KL +G+ LKT TGH + C+ +V VS S D + +W+ T + V
Sbjct: 218 DLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 156 MYGHPNFIYSVAAH 169
+ GH + + S A H
Sbjct: 278 LQGHTDVVISTACH 291
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 122/269 (45%), Gaps = 42/269 (15%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKP----------------NDLS 44
Y L L GH+ V S+ +P+G + S+S DK K+W +D++
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIK 103
+ N L+SAS D T K+W + S +C T++ H V+ + +IV+G D++++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 104 LHS-EEGEFLKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHTMYG--- 158
+ + G LKTL H+D V + D VS S D R+WD+ +G+C+ T+
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 159 --------HPNFIYSVAAHGD---LITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILP 207
PN Y +AA D + + +C+ Y + I A ++
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTG 251
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQ 236
IV+GS D +V ++ + Q ++ VQ
Sbjct: 252 GKWIVSGSEDNMVYIW----NLQTKEIVQ 276
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 3 KLSTALYGHSMDVRSLSVTP-DGCILSASRDKSAKLWKPNDLSPGAKVNTL--------- 52
K L GHS V + P I+S S D+S ++W D+ G + TL
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW---DVKTGMCLKTLPAHSDPVSA 157
Query: 53 ----------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLA-NG-IIVTGCADK 100
+S+S+D ++W S QC T+ + ++ + NG I+ D
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 101 TIKLHS-EEGEFLKTLTGHTD---CV-RGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHT 155
T+KL +G+ LKT TGH + C+ +V VS S D + +W+ T + V
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 156 MYGHPNFIYSVAAH 169
+ GH + + S A H
Sbjct: 278 LQGHTDVVISTACH 291
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 107/251 (42%), Gaps = 48/251 (19%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKPND----------------LS 44
++ ++GH +V S+S+ P+G I+SASRDK+ K+W+ +
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANGIIVTGCADKT--- 101
P + S S D T ++W + +++CK +R+H V I A + ++ T
Sbjct: 242 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV-ECISWAPESSYSSISEATGSE 300
Query: 102 IKLHSEEGEFLKTLTGHTDCVRGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHTMYGHPN 161
K + G FL +S S D +I++WD +TG C+ T+ GH N
Sbjct: 301 TKKSGKPGPFL---------------------LSGSRDKTIKMWDVSTGMCLMTLVGHDN 339
Query: 162 FIYSVAAH--GDLITSGGEDQCVCVYQNKAQNSFMIPAMSVWAVAILPNSD----IVTGS 215
++ V H G I S +D+ + V+ K + V L +VTGS
Sbjct: 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399
Query: 216 SDGIVRVFSAN 226
D V+V+
Sbjct: 400 VDQTVKVWECR 410
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 78/142 (54%), Gaps = 12/142 (8%)
Query: 92 IIVTGCADKTIKLHS-EEGEFLKTLTGHTDCVRGLAVLNDTDFV-SCSNDASIRVWDSTT 149
++V+ D TIK+ E G+F +TL GHTD V+ ++ + + SCS D +I++WD
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 150 GKCVHTMYGHPNFIYSVAA--HGDLITSGGEDQCVCVYQNKAQNSFMIPAMS---VWAVA 204
+C+ TM+GH + + SV+ +GD I S D+ + +++ Q + + + W
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE--VQTGYCVKTFTGHREWVRM 239
Query: 205 ILPNSD---IVTGSSDGIVRVF 223
+ PN D I + S+D VRV+
Sbjct: 240 VRPNQDGTLIASCSNDQTVRVW 261
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 7 ALYGHSMDVRSLSVTPDGCIL-SASRDKSAKLW----------------KPNDLSPGAKV 49
AL GH V + P ++ SAS D + K+W D+S
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 50 NTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANGI-IVTGCADKTIKL-HSE 107
L S S DMT KLW + +C T+ H+ V V + NG IV+ DKTIK+ +
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
Query: 108 EGEFLKTLTGHTDCVRGLAVLND-TDFVSCSNDASIRVWDSTTGKCVHTMYGHPNFIYSV 166
G +KT TGH + VR + D T SCSND ++RVW T +C + H + + +
Sbjct: 223 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 282
Query: 167 A 167
+
Sbjct: 283 S 283
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 114/265 (43%), Gaps = 35/265 (13%)
Query: 4 LSTALYGHSMDVRSLSVTPDGC--ILSASRDKSAKLWK--PNDLSPGAKVNTL------- 52
L + H+ V +++ D I+SASRDKS LWK +D + G L
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 53 ------------LSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCAD 99
LS SWD +LW L + H V V L N IV+ D
Sbjct: 434 EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD 493
Query: 100 KTIKLHSEEGEFLKTLT----GHTD---CVRGLAVLNDTDFVSCSNDASIRVWDSTTGKC 152
+TIKL + GE T++ GH D CVR VS S D +++VW+ + K
Sbjct: 494 RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553
Query: 153 VHTMYGHPNFIYSVAAH--GDLITSGGEDQCVCVYQ-NKAQNSFMIPAMSVW-AVAILPN 208
T+ GH ++ +VA G L SGG+D V ++ + + + + A SV A+ PN
Sbjct: 554 RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPN 613
Query: 209 SDIVTGSSDGIVRVFSANPDRQAED 233
+ +++ ++++ ED
Sbjct: 614 RYWLCAATEHGIKIWDLESKSIVED 638
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 21/85 (24%)
Query: 3 KLSTALYGHSMDVRSLSVTPDGCIL-SASRDKSAKLWKPNDLSPGAKVNTL--------- 52
KL + L GH+ V +++V+PDG + S +D LW DL+ G K+ +L
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW---DLAEGKKLYSLEANSVIHAL 608
Query: 53 --------LSASWDMTAKLWCLESQ 69
L A+ + K+W LES+
Sbjct: 609 CFSPNRYWLCAATEHGIKIWDLESK 633
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 115/278 (41%), Gaps = 28/278 (10%)
Query: 26 ILSASRDKSAKLWKPNDLSPGAKV--------------NTLLSASWDMTAKLWCLESQQC 71
I+S RD + K+W N L + +++ S D T ++W + + +
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEM 205
Query: 72 KLTIRQHEMAVWGVIQLANGIIVTGCADKTIKLHS----EEGEFLKTLTGHTDCVRGLAV 127
T+ H AV ++ NG++VT D++I + + + L GH V +
Sbjct: 206 LNTLIHHCEAVLH-LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV-NVVD 263
Query: 128 LNDTDFVSCSNDASIRVWDSTTGKCVHTMYGHPNFIYSVAAHGDLITSGGEDQCVCVYQN 187
+D VS S D +I+VW+++T + V T+ GH I + L+ SG D + ++
Sbjct: 264 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 323
Query: 188 KAQNSFMIPAMSVWAVAILP--NSDIVTGSSDGIVRVF----SANPDRQAEDAVQAQYAE 241
+ + V + N IV+G+ DG ++V+ + +P A E
Sbjct: 324 ECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 383
Query: 242 EVKKLKSANEQEIGGVKVSDDGIVRV--FSANPDRQAE 277
++ E V S D + + F +P QAE
Sbjct: 384 HSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQAE 421
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 129 NDTDFVSCSNDASIRVWDSTTGKCVHTMYGHPNFIYSVAAHGDLITSGGEDQCVCVY 185
+D VS D +I++WD T +C + GH + + +I +G D V V+
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 198
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 85/207 (41%), Gaps = 31/207 (14%)
Query: 4 LSTALYGHSMDVRSLSVTPD--GCILSASRDKSAKLWK---------------------P 40
L L GH+ V ++ TP ILSASRDK+ +WK
Sbjct: 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 41 NDLSPGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCAD 99
+D+ + LS SWD T +LW L + H V V N IV+G D
Sbjct: 90 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 149
Query: 100 KTIKLHSEEGEFLKTLTGHT-----DCVRGLAVLNDTDFVSCSNDASIRVWDSTTGKCVH 154
KTIKL + G T+ + CVR ++ VSC D ++VW+ K
Sbjct: 150 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 209
Query: 155 TMYGHPNFI--YSVAAHGDLITSGGED 179
GH ++ +V+ G L SGG+D
Sbjct: 210 NHIGHTGYLNTVTVSPDGSLCASGGKD 236
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Query: 92 IIVTGCADKTI---KLHSEEGEF---LKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRV 144
+I++ DKTI KL +E + + L GH+ V + + +D F +S S D ++R+
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 145 WDSTTGKCVHTMYGHPNFIYSVAAHGD--LITSGGEDQCVCVYQNKAQNSFMI--PAMSV 200
WD TTG GH + SVA D I SG D+ + ++ + + + S
Sbjct: 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 172
Query: 201 W--AVAILPNSD---IVTGSSDGIVRVFS 224
W V PNS IV+ D +V+V++
Sbjct: 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 3 KLSTALYGHSMDVRSLSVTPDGCIL-SASRDKSAKLWKPNDLSPGAKVNTL 52
KL T GH+ + +++V+PDG + S +D A LW DL+ G + TL
Sbjct: 206 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW---DLNEGKHLYTL 253
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 85/207 (41%), Gaps = 31/207 (14%)
Query: 4 LSTALYGHSMDVRSLSVTPD--GCILSASRDKSAKLWK---------------------P 40
L L GH+ V ++ TP ILSASRDK+ +WK
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 41 NDLSPGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCAD 99
+D+ + LS SWD T +LW L + H V V N IV+G D
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 126
Query: 100 KTIKLHSEEGEFLKTLTGHT-----DCVRGLAVLNDTDFVSCSNDASIRVWDSTTGKCVH 154
KTIKL + G T+ + CVR ++ VSC D ++VW+ K
Sbjct: 127 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 186
Query: 155 TMYGHPNFI--YSVAAHGDLITSGGED 179
GH ++ +V+ G L SGG+D
Sbjct: 187 NHIGHTGYLNTVTVSPDGSLCASGGKD 213
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Query: 92 IIVTGCADKTI---KLHSEEGEF---LKTLTGHTDCVRGLAVLNDTDF-VSCSNDASIRV 144
+I++ DKTI KL +E + + L GH+ V + + +D F +S S D ++R+
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 145 WDSTTGKCVHTMYGHPNFIYSVAAHGD--LITSGGEDQCVCVYQNKAQNSFMI--PAMSV 200
WD TTG GH + SVA D I SG D+ + ++ + + + S
Sbjct: 90 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 149
Query: 201 W--AVAILPNSD---IVTGSSDGIVRVFS 224
W V PNS IV+ D +V+V++
Sbjct: 150 WVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 3 KLSTALYGHSMDVRSLSVTPDGCIL-SASRDKSAKLWKPNDLSPGAKVNTL 52
KL T GH+ + +++V+PDG + S +D A LW DL+ G + TL
Sbjct: 183 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW---DLNEGKHLYTL 230
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 14/172 (8%)
Query: 72 KLTIRQHEMAVWGVIQLANGIIVTGC-ADKTIKLH-SEEGEFLKTLTGHTDCVRGLAVLN 129
+L +R H AV+ +G + C ADKT+++ +E GE L + H D V A +
Sbjct: 615 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS 674
Query: 130 DTDFV-SCSNDASIRVWDSTTGKCVHTMYGHPNFI----YSVAAHGDLITSGGEDQCVCV 184
D ++ +CS D +++WDS TGK VHT H + ++ ++ L+ +G D + +
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 185 Y---QNKAQNSFMIPAMSVWAVAILPNSDIV-TGSSDGIVRVF---SANPDR 229
+ Q + +N+ SV P+ +++ + S+DG +R++ SAN +
Sbjct: 735 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERK 786
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 24/167 (14%)
Query: 10 GHSMDVRSLSVTPDG-CILSASRDKSAKLWKPNDLSPGAKV-----------------NT 51
GH VR + T DG ++S+S D ++W + G V +
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVW---NWQTGDYVFLQAHQETVKDFRLLQDSR 1064
Query: 52 LLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANGI-IVTGCADKTIKLHS-EEG 109
LLS S+D T K+W + + + + H+ V ++ + ADKT K+ S +
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1124
Query: 110 EFLKTLTGHTDCVRGLAVLNDTDFVSCSND-ASIRVWDSTTGKCVHT 155
L L GH CVR A D ++ +D IR+W+ + G+ +H+
Sbjct: 1125 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1171
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 78 HEMAVWGVIQLANG-IIVTGCADKTIKLHS-EEGEFLKTLTGHTDCVRGLAVLNDTDFVS 135
H+ AV + A+G +++ D I++ + + G+++ L H + V+ +L D+ +S
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLLS 1067
Query: 136 CSNDASIRVWDSTTGKCVHTMYGHPNFIYSVAAHGD 171
S D +++VW+ TG+ H + S A D
Sbjct: 1068 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1103
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 25/128 (19%)
Query: 21 TPDGCILSASRDKSAKLWKPNDLSPGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEM 80
+ D I + S DK K+W D + G V+T S + C T + + +
Sbjct: 674 SDDSYIATCSADKKVKIW---DSATGKLVHTYDEHSEQVNC---------CHFTNKSNHL 721
Query: 81 AVWGVIQLANGIIVTGCADKTIKLHS-EEGEFLKTLTGHTDCVRGLAVLNDTDFV-SCSN 138
++ TG D +KL + E T+ GHT+ V D + + SCS
Sbjct: 722 -----------LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 770
Query: 139 DASIRVWD 146
D ++R+WD
Sbjct: 771 DGTLRLWD 778
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 51 TLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANGIIVTGCADKTIKL-HSEEG 109
TL+S+S D ++W ++ + ++ H+ V L + +++ D T+K+ + G
Sbjct: 1024 TLISSSEDSVIQVWNWQTGD-YVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG 1082
Query: 110 EFLKTLTGHTDCVRGLAVLND-TDFVSCSNDASIRVWDSTTGKCVHTMYGHPNFIYSVAA 168
+ T H V A+ +D T F S S D + ++W +H + GH + A
Sbjct: 1083 RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF 1142
Query: 169 HGD-LITSGGED 179
D ++ + G+D
Sbjct: 1143 SLDGILLATGDD 1154
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 72 KLTIRQHEMAVWGVIQLANGIIVTGCADKTIKLH-SEEGEFLKTLTGHTDCVRGLAVLND 130
+ T+R H +V +Q + ++TG DK I+++ S +FL L+GH V L +
Sbjct: 114 RTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG 173
Query: 131 TDFVSCSNDASIRVWDSTTGKCVHTMYGHPNFI--YSVAAHGDL--ITSGGEDQCVCVYQ 186
VS S D ++RVWD G C H GH + + + + ++ I +G D + V++
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 50 NTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVI-QLANGIIVTGCADKTIKLHS-E 107
N ++S S+D T +W + +C + H ++ I ++ D TI++ E
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLE 340
Query: 108 EGEFLKTLTGHTDCVRGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHTMYGHPNF--IYS 165
GE TL GHT V GL L+D VS + D SIR WD+ + Y H N I +
Sbjct: 341 NGELXYTLQGHTALV-GLLRLSDKFLVSAAADGSIRGWDANDYSRKFS-YHHTNLSAITT 398
Query: 166 VAAHGDLITSGGEDQ 180
+++ SG E+Q
Sbjct: 399 FYVSDNILVSGSENQ 413
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 46/222 (20%)
Query: 50 NTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANGIIVTGCADKTIKLHS-EE 108
N +++ + D +++ +++ L + H+ VW + GI+V+G D+T+++ ++
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 192
Query: 109 GEFLKTLTGHTDCVRGLAVL---NDTDFVSCSNDASIRVWDSTTGKCV------------ 153
G GH VR L ++ N V+ S D ++ VW V
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 154 -HT----------MYGHPNFIYSVAAHGDLITSGGEDQCVCVYQNKAQNSFMIPAMSVWA 202
HT + GH + +V+ HG+++ SG D + VW
Sbjct: 253 FHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDN----------------TLIVWD 296
Query: 203 VAILPNSDIVTGSSDGIVRVFSANPDRQAEDAVQAQYAEEVK 244
VA I++G +D R++S D + + + A ++
Sbjct: 297 VAQXKCLYILSGHTD---RIYSTIYDHERKRCISASXDTTIR 335
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 85/225 (37%), Gaps = 48/225 (21%)
Query: 3 KLSTALYGHSMDVRSLSVTPDGCILSASRDKSAKLW------------------KPNDLS 44
K L GH V +L G ++S S D++ ++W + D+
Sbjct: 153 KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 45 PGAKVNTLLSASWDMTAKLWCL-----------------------ESQQCKLTIRQHEMA 81
+ +++ S D T +W L E+ +R H +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 82 VWGVIQLANGIIVTGCADKTIKL-HSEEGEFLKTLTGHTDCVRGLAVLNDTDFVSC---S 137
V V N I+V+G D T+ + + + L L+GHTD R + + D + C S
Sbjct: 273 VRTVSGHGN-IVVSGSYDNTLIVWDVAQXKCLYILSGHTD--RIYSTIYDHERKRCISAS 329
Query: 138 NDASIRVWDSTTGKCVHTMYGHPNFIYSVAAHGDLITSGGEDQCV 182
D +IR+WD G+ +T+ GH + + + S D +
Sbjct: 330 XDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSI 374
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 72 KLTIRQHEMAVWGVIQLANGIIVTGC-ADKTIKLH-SEEGEFLKTLTGHTDCVRGLAVLN 129
+L +R H AV+ +G + C ADKT+++ +E GE L + H D V A
Sbjct: 614 RLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFST 673
Query: 130 DTDFV-SCSNDASIRVWDSTTGKCVHTMYGHPNFI----YSVAAHGDLITSGGEDQCVCV 184
D F+ +CS D +++W+S TG+ VHT H + ++ ++H L+ +G D + +
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 185 Y---QNKAQNSFMIPAMSVWAVAILPNSDIV-TGSSDGIVRVFSA 225
+ Q + +N+ SV P+ ++ + S+DG ++++ A
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 23 DGCILSASRDKSAKLWKPNDLSPGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAV 82
D CI ++ K ++ K + LLS S+D T K+W + + + H+ V
Sbjct: 1041 DKCIFLRGHQETVKDFRL------LKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTV 1094
Query: 83 WGV-IQLANGIIVTGCADKTIKLHSEEGEF-LKTLTGHTDCVRGLAVLNDTDFVSCSND- 139
I + ADKT K+ S + L L GH CVR A D+ ++ +D
Sbjct: 1095 LSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDN 1154
Query: 140 ASIRVWDSTTGKCVH 154
IR+W+ + G+ +H
Sbjct: 1155 GEIRIWNVSNGELLH 1169
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 77 QHEMAVWGVIQLAN-GIIVTGCADKTIKLHSEEGEFLKTLTGHTDCVRGLAVLNDTDFVS 135
QH+ VW + A+ +++ D I++ + + + L GH + V+ +L ++ +S
Sbjct: 1007 QHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLS 1066
Query: 136 CSNDASIRVWDSTTG 150
S D +++VW+ TG
Sbjct: 1067 WSFDGTVKVWNIITG 1081
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 25/132 (18%)
Query: 21 TPDGCILSASRDKSAKLWKPNDLSPGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEM 80
T D I + S DK K+W G V+T S + C T H +
Sbjct: 673 TDDRFIATCSVDKKVKIWNS---MTGELVHTYDEHSEQVNC---------CHFTNSSHHL 720
Query: 81 AVWGVIQLANGIIVTGCADKTIKLHS-EEGEFLKTLTGHTDCVRGLAVL-NDTDFVSCSN 138
++ TG +D +KL + E T+ GHT+ V +D SCS
Sbjct: 721 -----------LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSA 769
Query: 139 DASIRVWDSTTG 150
D ++++WD+T+
Sbjct: 770 DGTLKLWDATSA 781
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Query: 47 AKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANGIIVTGCADKTIKL-H 105
A TL+S+S D ++W + +C + +R H+ V L N +++ D T+K+ +
Sbjct: 1019 ADEKTLISSSDDAEIQVWNWQLDKC-IFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWN 1077
Query: 106 SEEGEFLKTLTGHTDCVRGLAVLND-TDFVSCSNDASIRVWDSTTGKCVHTMYGHPNFIY 164
G K H V + +D T F S S D + ++W +H + GH +
Sbjct: 1078 IITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVR 1137
Query: 165 SVAAHGD--LITSGGED 179
A D L+ +G ++
Sbjct: 1138 CSAFSVDSTLLATGDDN 1154
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 14/172 (8%)
Query: 72 KLTIRQHEMAVWGVIQLANGIIVTGC-ADKTIKLH-SEEGEFLKTLTGHTDCVRGLAVLN 129
+L +R H AV+ +G + C ADKT+++ +E GE L + H D V A +
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS 667
Query: 130 DTDFV-SCSNDASIRVWDSTTGKCVHTMYGHPNFI----YSVAAHGDLITSGGEDQCVCV 184
D ++ +CS D +++WDS TGK VHT H + ++ ++ L+ +G D + +
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 185 Y---QNKAQNSFMIPAMSVWAVAILPNSDIV-TGSSDGIVRVF---SANPDR 229
+ Q + +N+ SV P+ +++ + S+DG +R++ SAN +
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERK 779
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 24/167 (14%)
Query: 10 GHSMDVRSLSVTPDG-CILSASRDKSAKLWKPNDLSPGAKV-----------------NT 51
GH VR + T DG ++S+S D ++W + G V +
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVW---NWQTGDYVFLQAHQETVKDFRLLQDSR 1057
Query: 52 LLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANGI-IVTGCADKTIKLHS-EEG 109
LLS S+D T K+W + + + + H+ V ++ + ADKT K+ S +
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 110 EFLKTLTGHTDCVRGLAVLNDTDFVSCSND-ASIRVWDSTTGKCVHT 155
L L GH CVR A D ++ +D IR+W+ + G+ +H+
Sbjct: 1118 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 78 HEMAVWGVIQLANG-IIVTGCADKTIKLHS-EEGEFLKTLTGHTDCVRGLAVLNDTDFVS 135
H+ AV + A+G +++ D I++ + + G+++ L H + V+ +L D+ +S
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLLS 1060
Query: 136 CSNDASIRVWDSTTGKCVHTMYGHPNFIYSVAAHGD 171
S D +++VW+ TG+ H + S A D
Sbjct: 1061 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1096
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 25/128 (19%)
Query: 21 TPDGCILSASRDKSAKLWKPNDLSPGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEM 80
+ D I + S DK K+W D + G V+T S + C T + + +
Sbjct: 667 SDDSYIATCSADKKVKIW---DSATGKLVHTYDEHSEQVNC---------CHFTNKSNHL 714
Query: 81 AVWGVIQLANGIIVTGCADKTIKLHS-EEGEFLKTLTGHTDCVRGLAVLNDTDFV-SCSN 138
++ TG D +KL + E T+ GHT+ V D + + SCS
Sbjct: 715 -----------LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763
Query: 139 DASIRVWD 146
D ++R+WD
Sbjct: 764 DGTLRLWD 771
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 51 TLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANGIIVTGCADKTIKL-HSEEG 109
TL+S+S D ++W ++ + ++ H+ V L + +++ D T+K+ + G
Sbjct: 1017 TLISSSEDSVIQVWNWQTGD-YVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG 1075
Query: 110 EFLKTLTGHTDCVRGLAVLND-TDFVSCSNDASIRVWDSTTGKCVHTMYGHPNFIYSVAA 168
+ T H V A+ +D T F S S D + ++W +H + GH + A
Sbjct: 1076 RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF 1135
Query: 169 HGD-LITSGGED 179
D ++ + G+D
Sbjct: 1136 SLDGILLATGDD 1147
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 72 KLTIRQHEMAVWGVIQLANGIIVTGCADKTIKLH-SEEGEFLKTLTGHTDCVRGLAVLND 130
+ T+R H +V +Q + ++TG DK I+++ S +FL L+GH V L +
Sbjct: 114 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 173
Query: 131 TDFVSCSNDASIRVWDSTTGKCVHTMYGHPNFI--YSVAAHGDL--ITSGGEDQCVCVYQ 186
VS S D ++RVWD G C H GH + + + + ++ I +G D + V++
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
Query: 50 NTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVI-QLANGIIVTGCADKTIKLHS-E 107
N ++S S+D T +W + +C + H ++ I ++ D TI++ E
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340
Query: 108 EGEFLKTLTGHTDCVRGLAVLNDTDFVSCSNDASIRVWDSTTGKCVHTMYGHPNF--IYS 165
GE + TL GHT V GL L+D VS + D SIR WD+ + Y H N I +
Sbjct: 341 NGELMYTLQGHTALV-GLLRLSDKFLVSAAADGSIRGWDANDYSRKFS-YHHTNLSAITT 398
Query: 166 VAAHGDLITSGGEDQ 180
+++ SG E+Q
Sbjct: 399 FYVSDNILVSGSENQ 413
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 46/222 (20%)
Query: 50 NTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANGIIVTGCADKTIKLHS-EE 108
N +++ + D +++ +++ L + H+ VW + GI+V+G D+T+++ ++
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 192
Query: 109 GEFLKTLTGHTDCVRGLAVL---NDTDFVSCSNDASIRVWDSTTGKCV------------ 153
G GH VR L ++ N V+ S D ++ VW V
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 154 -HT----------MYGHPNFIYSVAAHGDLITSGGEDQCVCVYQNKAQNSFMIPAMSVWA 202
HT + GH + +V+ HG+++ SG D + VW
Sbjct: 253 FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI----------------VWD 296
Query: 203 VAILPNSDIVTGSSDGIVRVFSANPDRQAEDAVQAQYAEEVK 244
VA + I++G +D R++S D + + + A ++
Sbjct: 297 VAQMKCLYILSGHTD---RIYSTIYDHERKRCISASMDTTIR 335
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 86/225 (38%), Gaps = 48/225 (21%)
Query: 3 KLSTALYGHSMDVRSLSVTPDGCILSASRDKSAKLW------------------KPNDLS 44
K L GH V +L G ++S S D++ ++W + D+
Sbjct: 153 KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 45 PGAKVNTLLSASWDMTAKLWCL-----------------------ESQQCKLTIRQHEMA 81
+ +++ S D T +W L E+ +R H +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 82 VWGVIQLANGIIVTGCADKTIKL-HSEEGEFLKTLTGHTDCVRGLAVLNDTDFVSC---S 137
V V N I+V+G D T+ + + + L L+GHTD R + + D + C S
Sbjct: 273 VRTVSGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTD--RIYSTIYDHERKRCISAS 329
Query: 138 NDASIRVWDSTTGKCVHTMYGHPNFIYSVAAHGDLITSGGEDQCV 182
D +IR+WD G+ ++T+ GH + + + S D +
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSI 374
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 52 LLSASWDMTAKLWCLESQ-QCKLTIRQHEMAVWGVIQLAN--GIIVTGCADKTIKLHSEE 108
+LS S D+T KLW E+ + T HE V V +GC D+T+K+ S
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL- 170
Query: 109 GEFLKTLTGHTDCVRGLAVLNDTDF---------VSCSNDASIRVWDSTTGKCVHTMYGH 159
G+ T T RG+ N D+ ++ S+D +I++WD T CV T+ GH
Sbjct: 171 GQSTPNFTLTTGQERGV---NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 160 PNFIYSVAAHGDL--ITSGGEDQCVCVYQN---KAQNSFMIPAMSVWAVAILP 207
+ + H L I SG ED + ++ + K + + + W +A P
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 137 SNDASIRVWDSTTGKCVHTMYGHPNFIYSVAAH--GDLITSGGEDQCVCVY---QNKA-Q 190
S+D IRV++ TG+ V HP++I S+A H + SG +D V ++ N A +
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 191 NSFMIPAMSVWAVAILPN--SDIVTGSSDGIVRVFS 224
+F V VA P S +G D V+V+S
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 52 LLSASWDMTAKLWCLESQ-QCKLTIRQHEMAVWGVIQLAN--GIIVTGCADKTIKLHSEE 108
+LS S D+T KLW E+ + T HE V V +GC D+T+K+ S
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL- 170
Query: 109 GEFLKTLTGHTDCVRGLAVLNDTDF---------VSCSNDASIRVWDSTTGKCVHTMYGH 159
G+ T T RG+ N D+ ++ S+D +I++WD T CV T+ GH
Sbjct: 171 GQSTPNFTLTTGQERGV---NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 160 PNFIYSVAAHGDL--ITSGGEDQCVCVYQN---KAQNSFMIPAMSVWAVAILP 207
+ + H L I SG ED + ++ + K + + + W +A P
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 137 SNDASIRVWDSTTGKCVHTMYGHPNFIYSVAAH--GDLITSGGEDQCVCVY---QNKA-Q 190
S+D IRV++ TG+ V HP++I S+A H + SG +D V ++ N A +
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 191 NSFMIPAMSVWAVAILPN--SDIVTGSSDGIVRVFS 224
+F V VA P S +G D V+V+S
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 52 LLSASWDMTAKLWCLESQ-QCKLTIRQHEMAVWGVIQLAN--GIIVTGCADKTIKLHSEE 108
+LS S D+T KLW E+ + T HE V V +GC D+T+K+ S
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL- 170
Query: 109 GEFLKTLTGHTDCVRGLAVLN-----DTDF-VSCSNDASIRVWDSTTGKCVHTMYGHPNF 162
G+ T T RG+ ++ D + ++ S+D +I++WD T CV T+ GH +
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230
Query: 163 IYSVAAHGDL--ITSGGEDQCVCVYQN---KAQNSFMIPAMSVWAVAILPNSD---IVTG 214
+ H L I SG ED + ++ + K + + + W +A P I +G
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Query: 215 SSDGI 219
+G
Sbjct: 291 FDNGF 295
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 137 SNDASIRVWDSTTGKCVHTMYGHPNFIYSVAAH--GDLITSGGEDQCVCVY---QNKA-Q 190
S+D IRV++ TG+ V HP++I S+A H + SG +D V ++ N A +
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 191 NSFMIPAMSVWAVAILPN--SDIVTGSSDGIVRVFS 224
+F V VA P S +G D V+V+S
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 52 LLSASWDMTAKLWCLESQ-QCKLTIRQHEMAVWGVIQLAN--GIIVTGCADKTIKLHSEE 108
+LS S D+T KLW E+ + T HE V V +GC D+T+K+ S
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL- 170
Query: 109 GEFLKTLTGHTDCVRGLAVLN-----DTDF-VSCSNDASIRVWDSTTGKCVHTMYGHPNF 162
G+ T T RG+ ++ D + ++ S+D +I++WD T CV T+ GH +
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230
Query: 163 IYSVAAHGDL--ITSGGEDQCVCVYQN---KAQNSFMIPAMSVWAVAILPNSD---IVTG 214
+ H L I SG ED + ++ + K + + + W +A P I +G
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Query: 215 SSDGI 219
+G
Sbjct: 291 FDNGF 295
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 137 SNDASIRVWDSTTGKCVHTMYGHPNFIYSVAAH--GDLITSGGEDQCVCVY---QNKA-Q 190
S+D IRV++ TG+ V HP++I S+A H + SG +D V ++ N A +
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 191 NSFMIPAMSVWAVAILPN--SDIVTGSSDGIVRVFS 224
+F V VA P S +G D V+V+S
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 94/223 (42%), Gaps = 47/223 (21%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDGCIL-SASRDKSAKLWKPNDLSPGAKVNTLLSASWDMT 60
++ T L GH +V+S++ P G +L + SRDKS +W+ ++ V+ L S + D+
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 61 AKLWCLESQQCKLTIRQHEMAVWGVIQLANGIIVTGCADKTIKLHSEEGE---FLKTLTG 117
+W + ++ + D T+KL+ EE + TL G
Sbjct: 155 HVVW----------------------HPSQELLASASYDDTVKLYREEEDDWVCCATLEG 192
Query: 118 HTDCVRGLAV-LNDTDFVSCSNDASIRVW---------------DSTTGKCVHTMYG-HP 160
H V LA + SCS+D ++R+W + KC+ T+ G H
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS 252
Query: 161 NFIYSVA---AHGDLITSGGEDQCVCVYQNKAQNSFMIPAMSV 200
IY +A G L T+ G+D + V+Q + P S+
Sbjct: 253 RTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSDPQQPTFSL 294
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 131 TDFVSCSNDASIRVW----DSTTGKCVHTMYGHPNFIYSVAAH--GDLITSGGEDQCVCV 184
T SC D IR+W DS K V + GH + VA G+ + S D C+
Sbjct: 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSE-GHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 185 YQNKAQNSFMIPAM------SVWAVAILPNSDIV-TGSSDGIVRVFSANPDRQAED-AVQ 236
++ K Q+ F V +VA P+ +++ T S D V V+ + + + E +V
Sbjct: 88 WK-KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL 146
Query: 237 AQYAEEVKKLKSANEQEIGGVKVSDDGI 264
+ ++VK + QE+ DD +
Sbjct: 147 NSHTQDVKHVVWHPSQELLASASYDDTV 174
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 12/101 (11%)
Query: 92 IIVTGCADKTI---KLHSEE--GEF---LKTLTGHTDCVRGLAVLNDTDF-VSCSNDASI 142
++++G DKT+ KL+ EE G F K LTGH V LA+ + F +S S D ++
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 143 RVWDSTTGKCVHTMYGHPNFIYSVAAHGD---LITSGGEDQ 180
R+WD TG GH + +YSVA D ++++G E +
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAERE 141
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 86/200 (43%), Gaps = 41/200 (20%)
Query: 26 ILSASRDKSAKLWK-----------------------PNDLSPGAKVNTLLSASWDMTAK 62
++S SRDK+ +WK +DL+ + +S+SWD T +
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 63 LWCLESQQCKLTIRQHEMAVWGV-IQLANGIIVTGCADKTIKLHSEEGEFLKTLT---GH 118
LW L + H+ V+ V N I++ A++ IKL + GE + H
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 119 TD---CVRGLAVLNDTD--------FVSCSNDASIRVWDSTTGKCVHTMYGHPNFI--YS 165
+D CVR ++ + F S D ++VW+ T + +T H + + S
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLS 220
Query: 166 VAAHGDLITSGGEDQCVCVY 185
++ +G I +GG+D+ + ++
Sbjct: 221 ISPNGKYIATGGKDKKLLIW 240
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 85/209 (40%), Gaps = 49/209 (23%)
Query: 3 KLSTALYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKPNDLSPGAKVNTL--------- 52
K+ L GH D+ SL P G ++S S D++ ++W DL G TL
Sbjct: 156 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW---DLRTGQCSLTLSIEDGVTTV 212
Query: 53 ----------LSASWDMTAKLWCLESQQCKLTIR---------QHEMAVWGVIQLANG-I 92
+ S D ++W +S+ L R H+ +V+ V+ +G
Sbjct: 213 AVSPGDGKYIAAGSLDRAVRVW--DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 270
Query: 93 IVTGCADKTIKLHS-------------EEGEFLKTLTGHTDCVRGLAVL-NDTDFVSCSN 138
+V+G D+++KL + G T GH D V +A ND +S S
Sbjct: 271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 330
Query: 139 DASIRVWDSTTGKCVHTMYGHPNFIYSVA 167
D + WD +G + + GH N + SVA
Sbjct: 331 DRGVLFWDKKSGNPLLMLQGHRNSVISVA 359
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 16/163 (9%)
Query: 43 LSPGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANG-IIVTGCADKT 101
SP K L + + D ++W +E+++ + ++ HE ++ + +G +V+G D+T
Sbjct: 131 FSPDGKF--LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 102 IKL-HSEEGEFLKTLTGHTDCVRGLAVL-NDTDFVSC-SNDASIRVWDSTTGKCVHTM-- 156
+++ G+ TL+ D V +AV D +++ S D ++RVWDS TG V +
Sbjct: 189 VRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 157 -----YGHPNFIYSV--AAHGDLITSGGEDQCVCVYQNKAQNS 192
GH + +YSV G + SG D+ V ++ + N+
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 19/141 (13%)
Query: 122 VRGLAVLNDTDFVSC-SNDASIRVWDSTTGKCVHTMYGHPNFIYSVA--AHGDLITSGGE 178
+R + D F++ + D IR+WD K V + GH IYS+ GD + SG
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 179 DQCVCVYQNKAQNSFMIPAM--SVWAVAILPNSD--IVTGSSDGIVRVFSANPDRQAEDA 234
D+ V ++ + + ++ V VA+ P I GS D VRV+
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW----------- 234
Query: 235 VQAQYAEEVKKLKSANEQEIG 255
++ V++L S NE G
Sbjct: 235 -DSETGFLVERLDSENESGTG 254
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 81/208 (38%), Gaps = 26/208 (12%)
Query: 3 KLSTALYGHSMDVRSLSVTPDGCILSASRDKSAKLWKPN------------------DLS 44
K S A++ + + S + D IL+AS D + LW DL+
Sbjct: 147 KKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA 205
Query: 45 PGAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANG-IIVTGCADKTIK 103
P NT +S D A +W + S QC HE V V +G +G D T +
Sbjct: 206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCR 265
Query: 104 LHSEEGEFLKTLTGHTDCVRGLA----VLNDTDFVSCSNDASIRVWDSTTGKCVHTMYGH 159
L+ + + + G + L+ + ND +I VWD G V ++GH
Sbjct: 266 LYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH 325
Query: 160 PNFIYS--VAAHGDLITSGGEDQCVCVY 185
N + + V+ G SG D + V+
Sbjct: 326 ENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 92 IIVTGCADKTIKLHS-EEGEFLKTLTGHTDCVRGLAVL-NDTDFVSCSNDASIRVWDSTT 149
++VT D IK++ + TL+GH V +A +DT FVS S+D S++VWD T
Sbjct: 220 LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT 279
Query: 150 GKCVHTMYGHPNFIYSVA--AHGDLITSGGEDQCVCVY 185
CVHT + H + ++ V +G I S G+DQ + +Y
Sbjct: 280 RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 18/208 (8%)
Query: 76 RQHEMAVWGVIQLANG-----IIVTGCADKTIKLHSEEGEFLK---TLTGHTDCVRGLAV 127
+ H+ A+W V N +VTG D +K+ E L +L GH V + +
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI 88
Query: 128 LNDTDFVSCSN-DASIRVWDSTTGKCVHTMYGHPNFIYSVAAHGD--LITSG---GEDQC 181
+ + S+ DA IR+WD GK + ++ P +++A D + +G G+
Sbjct: 89 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 148
Query: 182 VCVYQNKAQNSFMIPAMSVWAVAILPNSD-IVTGSSDGIVRVFSANPDRQAEDAVQAQYA 240
V K + S + ++A P+ + +G+ DGI+ +F + +A
Sbjct: 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH--TLEGHA 206
Query: 241 EEVKKLKSANEQEIGGVKVSDDGIVRVF 268
++ L + + ++ V SDDG ++++
Sbjct: 207 MPIRSLTFSPDSQL-LVTASDDGYIKIY 233
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 23/117 (19%)
Query: 3 KLSTALYGHSMDVRSLSVTPDGCIL-SASRDKSAKLWKPNDLSPGAKVNTLLS-ASWDMT 60
KL L GH+M +RSL+ +PD +L +AS D K++ D+ TL ASW +
Sbjct: 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY---DVQHANLAGTLSGHASWVLN 253
Query: 61 AKL------------------WCLESQQCKLTIRQHEMAVWGVIQLANGIIVTGCAD 99
W + ++ C T H+ VWGV NG + D
Sbjct: 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD 310
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 92 IIVTGCADKTIKLHSEEGEFLKTLTGHTDCVRG----LAVLNDTDFVSCSNDASIRVWDS 147
+I G K + GEFLK + + V+G L+ L+ F + DA+IRVWD
Sbjct: 222 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 281
Query: 148 TTGKCVH 154
TT KCV
Sbjct: 282 TTSKCVQ 288
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 92 IIVTGCADKTIKLHSEEGEFLKTLTGHTDCVRG----LAVLNDTDFVSCSNDASIRVWDS 147
+I G K + GEFLK + + V+G L+ L+ F + DA+IRVWD
Sbjct: 222 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 281
Query: 148 TTGKCVH 154
TT KCV
Sbjct: 282 TTSKCVQ 288
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 31/169 (18%)
Query: 93 IVTGCADKTIKLHSEEGE---FLKTLTGHTDCVRGLAVLN---DTDFVSCSNDASIRVWD 146
+ T +DKTIK+ EGE + TLTGH V + + T SCS D + +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 147 STTGK----CVHTMYGHPNFIYSVAAH--GDLI---TSGGEDQCVCVYQNKAQNSFMIPA 197
G+ VH ++ A H G L+ +S G+ V +N + +I A
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA 143
Query: 198 MSV------WAVAILP----------NSDIVTGSSDGIVRVFSANPDRQ 230
++ WA A + + VTG +D +V+++ N D Q
Sbjct: 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 2 YKLSTALYGHSMDVRSLSVTPD----GCILSASRDKSAKLW-KPNDLSPGAKV------- 49
Y L + L GHS VR ++ +P + S S+D++ +W + N+ P K
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 253
Query: 50 -NTLLSASWDMTAKLWCLESQQCKLTIRQHEM 80
+ L ASW ++ + L K+T+ + +
Sbjct: 254 PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 31/169 (18%)
Query: 93 IVTGCADKTIKLHSEEGE---FLKTLTGHTDCVRGLAVLN---DTDFVSCSNDASIRVWD 146
+ T +DKTIK+ EGE + TLTGH V + + T SCS D + +W
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Query: 147 STTGK----CVHTMYGHPNFIYSVAAH--GDLI---TSGGEDQCVCVYQNKAQNSFMIPA 197
G+ VH ++ A H G L+ +S G+ V +N + +I A
Sbjct: 86 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA 145
Query: 198 MSV------WAVAILP----------NSDIVTGSSDGIVRVFSANPDRQ 230
++ WA A + + VTG +D +V+++ N D Q
Sbjct: 146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 194
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 2 YKLSTALYGHSMDVRSLSVTPD----GCILSASRDKSAKLW-KPNDLSPGAKV------- 49
Y L + L GHS VR ++ +P + S S+D++ +W + N+ P K
Sbjct: 196 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 255
Query: 50 -NTLLSASWDMTAKLWCLESQQCKLTIRQHEM 80
+ L ASW ++ + L K+T+ + +
Sbjct: 256 PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 31/169 (18%)
Query: 93 IVTGCADKTIKLHSEEGE---FLKTLTGHTDCVRGLAVLN---DTDFVSCSNDASIRVWD 146
+ T +DKTIK+ EGE + TLTGH V + + T SCS D + +W
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Query: 147 STTGK----CVHTMYGHPNFIYSVAAH--GDLI---TSGGEDQCVCVYQNKAQNSFMIPA 197
G+ VH ++ A H G ++ +S G+ V +N + +I A
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA 143
Query: 198 MSV------WAVAILP----------NSDIVTGSSDGIVRVFSANPDRQ 230
++ WA A + + VTG +D +V+++ N D Q
Sbjct: 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 2 YKLSTALYGHSMDVRSLSVTPD----GCILSASRDKSAKLW-KPNDLSPGAKV------- 49
Y L + L GHS VR ++ +P + S S+D++ +W + N+ P K
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 253
Query: 50 -NTLLSASWDMTAKLWCLESQQCKLTIRQHEM 80
+ L ASW ++ + L K+T+ + +
Sbjct: 254 PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 35/171 (20%)
Query: 93 IVTGCADKTIKLHSEEGE---FLKTLTGHTDCVRGLAVLN---DTDFVSCSNDASIRVWD 146
+ T +DKTIK+ EGE + TLTGH V + + T SCS D + +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 147 STTGK----CVHTMYGHPNFIYSVA----AHGDLI---TSGGEDQCVCVYQNKAQNSFMI 195
G+ VH + H + SV +G L+ +S G+ V +N + +I
Sbjct: 84 EENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII 141
Query: 196 PAMSV------WAVAILP----------NSDIVTGSSDGIVRVFSANPDRQ 230
A ++ WA A + + VTG +D +V+++ N D Q
Sbjct: 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 2 YKLSTALYGHSMDVRSLSVTPD----GCILSASRDKSAKLW-KPNDLSPGAKV------- 49
Y L + L GHS VR ++ +P + S S+D++ +W + N+ P K
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 253
Query: 50 -NTLLSASWDMTAKLWCLESQQCKLTIRQHEM 80
+ L ASW ++ + L K+T+ + +
Sbjct: 254 PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 31/167 (18%)
Query: 95 TGCADKTIKLHSEEGE---FLKTLTGHTDCVRGLAVLN---DTDFVSCSNDASIRVWDST 148
T +DKTIK+ EGE + TLTGH V + + T SCS D + +W
Sbjct: 26 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEE 85
Query: 149 TGK----CVHTMYGHPNFIYSVAAHGD-----LITSGGEDQCVCVYQNKAQNSFMIPAMS 199
G+ VH ++ A H + +S G+ V +N + +I A +
Sbjct: 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145
Query: 200 V------WAVAILP----------NSDIVTGSSDGIVRVFSANPDRQ 230
+ WA A + + VTG +D +V+++ N D Q
Sbjct: 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 2 YKLSTALYGHSMDVRSLSVTPDGCI----LSASRDKSAKLW-KPNDLSPGAKV------- 49
Y L + L GHS VR ++ +P + S S+D++ +W + N+ P K
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 253
Query: 50 -NTLLSASWDMTAKLWCLESQQCKLTIRQHEM 80
+ L ASW ++ + L K+T+ + +
Sbjct: 254 PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 21/190 (11%)
Query: 3 KLSTALYGHSMDVRSLSVTPDGCILSASRDKSAKLWKPN----------------DLSPG 46
++S L GH+ + D I+++S D + LW LS
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193
Query: 47 AKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANG-IIVTGCADKTIKLH 105
+S + D +AKLW + C+ T HE + + NG TG D T +L
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 106 SEEGEFLKTLTGHTDCVRGLAVLNDTD----FVSCSNDASIRVWDSTTGKCVHTMYGHPN 161
+ H + + G+ ++ + ++ +D + VWD+ + GH N
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 162 FIYSVAAHGD 171
+ + D
Sbjct: 314 RVSCLGVTDD 323
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 92/231 (39%), Gaps = 29/231 (12%)
Query: 8 LYGHSMDVRSLSVTPDGCIL-SASRDKSAKLWKPNDLSPGAKVNTL-LSASWDMTAKLWC 65
L GH + ++ D +L SAS+D +W D KV+ + L +SW MT
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW---DSYTTNKVHAIPLRSSWVMT----- 102
Query: 66 LESQQCKLTIRQHEMAVWGVIQLANGIIVTGCADKTIKLHSEEGEFLKTLTGHTDCVRGL 125
C + +A G+ + C+ +K + L GHT +
Sbjct: 103 -----CAYAPSGNYVACGGLDNI--------CSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 126 AVLNDTDFVSCSNDASIRVWDSTTGKCVHTMYGHPNFIYSVAAHGD--LITSGGEDQCVC 183
L+D V+ S D + +WD TG+ T GH + S++ D L SG D
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 184 VY---QNKAQNSFMIPAMSVWAVAILPNSD-IVTGSSDGIVRVFSANPDRQ 230
++ + + +F + A+ PN + TGS D R+F D++
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 21/190 (11%)
Query: 3 KLSTALYGHSMDVRSLSVTPDGCILSASRDKSAKLWKPN----------------DLSPG 46
++S L GH+ + D I+++S D + LW LS
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193
Query: 47 AKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANG-IIVTGCADKTIKLH 105
+S + D +AKLW + C+ T HE + + NG TG D T +L
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 106 SEEGEFLKTLTGHTDCVRGLAVLNDTD----FVSCSNDASIRVWDSTTGKCVHTMYGHPN 161
+ H + + G+ ++ + ++ +D + VWD+ + GH N
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 162 FIYSVAAHGD 171
+ + D
Sbjct: 314 RVSCLGVTDD 323
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 92/231 (39%), Gaps = 29/231 (12%)
Query: 8 LYGHSMDVRSLSVTPDGCIL-SASRDKSAKLWKPNDLSPGAKVNTL-LSASWDMTAKLWC 65
L GH + ++ D +L SAS+D +W D KV+ + L +SW MT
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW---DSYTTNKVHAIPLRSSWVMT----- 102
Query: 66 LESQQCKLTIRQHEMAVWGVIQLANGIIVTGCADKTIKLHSEEGEFLKTLTGHTDCVRGL 125
C + +A G+ + C+ +K + L GHT +
Sbjct: 103 -----CAYAPSGNYVACGGLDNI--------CSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 126 AVLNDTDFVSCSNDASIRVWDSTTGKCVHTMYGHPNFIYSVAAHGD--LITSGGEDQCVC 183
L+D V+ S D + +WD TG+ T GH + S++ D L SG D
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 184 VY---QNKAQNSFMIPAMSVWAVAILPNSD-IVTGSSDGIVRVFSANPDRQ 230
++ + + +F + A+ PN + TGS D R+F D++
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 21/190 (11%)
Query: 3 KLSTALYGHSMDVRSLSVTPDGCILSASRDKSAKLWKPN----------------DLSPG 46
++S L GH+ + D I+++S D + LW LS
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193
Query: 47 AKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANG-IIVTGCADKTIKLH 105
+S + D +AKLW + C+ T HE + + NG TG D T +L
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 106 SEEGEFLKTLTGHTDCVRGLAVLNDTD----FVSCSNDASIRVWDSTTGKCVHTMYGHPN 161
+ H + + G+ ++ + ++ +D + VWD+ + GH N
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 162 FIYSVAAHGD 171
+ + D
Sbjct: 314 RVSCLGVTDD 323
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 92/231 (39%), Gaps = 29/231 (12%)
Query: 8 LYGHSMDVRSLSVTPDG-CILSASRDKSAKLWKPNDLSPGAKVNTL-LSASWDMTAKLWC 65
L GH + ++ D +LSAS+D +W D KV+ + L +SW MT
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIW---DSYTTNKVHAIPLRSSWVMT----- 102
Query: 66 LESQQCKLTIRQHEMAVWGVIQLANGIIVTGCADKTIKLHSEEGEFLKTLTGHTDCVRGL 125
C + +A G+ + C+ +K + L GHT +
Sbjct: 103 -----CAYAPSGNYVACGGLDNI--------CSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 126 AVLNDTDFVSCSNDASIRVWDSTTGKCVHTMYGHPNFIYSVAAHGD--LITSGGEDQCVC 183
L+D V+ S D + +WD TG+ T GH + S++ D L SG D
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 184 VY---QNKAQNSFMIPAMSVWAVAILPNSD-IVTGSSDGIVRVFSANPDRQ 230
++ + + +F + A+ PN + TGS D R+F D++
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 21/190 (11%)
Query: 3 KLSTALYGHSMDVRSLSVTPDGCILSASRDKSAKLWKPN----------------DLSPG 46
++S L GH+ + D I+++S D + LW LS
Sbjct: 145 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 204
Query: 47 AKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANG-IIVTGCADKTIKLH 105
+S + D +AKLW + C+ T HE + + NG TG D T +L
Sbjct: 205 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 264
Query: 106 SEEGEFLKTLTGHTDCVRGLAVLNDTD----FVSCSNDASIRVWDSTTGKCVHTMYGHPN 161
+ H + + G+ ++ + ++ +D + VWD+ + GH N
Sbjct: 265 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 324
Query: 162 FIYSVAAHGD 171
+ + D
Sbjct: 325 RVSCLGVTDD 334
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 92/231 (39%), Gaps = 29/231 (12%)
Query: 8 LYGHSMDVRSLSVTPDGCIL-SASRDKSAKLWKPNDLSPGAKVNTL-LSASWDMTAKLWC 65
L GH + ++ D +L SAS+D +W D KV+ + L +SW MT
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW---DSYTTNKVHAIPLRSSWVMT----- 113
Query: 66 LESQQCKLTIRQHEMAVWGVIQLANGIIVTGCADKTIKLHSEEGEFLKTLTGHTDCVRGL 125
C + +A G+ + C+ +K + L GHT +
Sbjct: 114 -----CAYAPSGNYVACGGLDNI--------CSIYNLKTREGNVRVSRELAGHTGYLSCC 160
Query: 126 AVLNDTDFVSCSNDASIRVWDSTTGKCVHTMYGHPNFIYSVAAHGD--LITSGGEDQCVC 183
L+D V+ S D + +WD TG+ T GH + S++ D L SG D
Sbjct: 161 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 220
Query: 184 VY---QNKAQNSFMIPAMSVWAVAILPNSD-IVTGSSDGIVRVFSANPDRQ 230
++ + + +F + A+ PN + TGS D R+F D++
Sbjct: 221 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 271
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 21/190 (11%)
Query: 3 KLSTALYGHSMDVRSLSVTPDGCILSASRDKSAKLWKPN----------------DLSPG 46
++S L GH+ + D I+++S D + LW LS
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193
Query: 47 AKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGVIQLANG-IIVTGCADKTIKLH 105
+S + D +AKLW + C+ T HE + + NG TG D T +L
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 106 SEEGEFLKTLTGHTDCVRGLAVLNDTD----FVSCSNDASIRVWDSTTGKCVHTMYGHPN 161
+ H + + G+ ++ + ++ +D + VWD+ + GH N
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 162 FIYSVAAHGD 171
+ + D
Sbjct: 314 RVSCLGVTDD 323
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 28/212 (13%)
Query: 26 ILSASRDKSAKLWKPNDLSPGAKVNTL-LSASWDMTAKLWCLESQQCKLTIRQHEMAVWG 84
+LSAS+D +W D KV+ + L +SW MT C + +A G
Sbjct: 70 LLSASQDGKLIIW---DSYTTNKVHAIPLRSSWVMT----------CAYAPSGNYVACGG 116
Query: 85 VIQLANGIIVTGCADKTIKLHSEEGEFLKTLTGHTDCVRGLAVLNDTDFVSCSNDASIRV 144
+ + C+ +K + L GHT + L+D V+ S D + +
Sbjct: 117 LDNI--------CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 145 WDSTTGKCVHTMYGHPNFIYSVAAHGD--LITSGGEDQCVCVY---QNKAQNSFMIPAMS 199
WD TG+ T GH + S++ D L SG D ++ + + +F
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 200 VWAVAILPNSD-IVTGSSDGIVRVFSANPDRQ 230
+ A+ PN + TGS D R+F D++
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQE 260
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 33/194 (17%)
Query: 93 IVTGCADKTIKLHS-EEGEFLKTL-----TGHTDCVRGLAV--LNDTDFVSCSNDASIRV 144
++TG D+T L G+ + +GHT V L++ LN F+S S D ++R+
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 145 WD-STTGKCVHTMYGHPNFIYSVAAHGDLITSG-GEDQCVC------------VYQNKA- 189
WD T + V T +GH I SV D G G D C VY +
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD 292
Query: 190 QNSFMIPAMSVWAVAILPNSDIVTGSSDGIVRVFSANPDRQAEDAVQAQYAEEVKKLKSA 249
+N +P ++ A +I + G S+G V+ D + A+ + L+++
Sbjct: 293 RNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVW---------DTLLAEMVLNLGTLQNS 342
Query: 250 NEQEIGGVKVSDDG 263
+E I + +S DG
Sbjct: 343 HEGRISCLGLSSDG 356
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 94/241 (39%), Gaps = 33/241 (13%)
Query: 8 LYGHSMDVRSLSVTPD-GCILSASRDKSAKLWKPNDLSPGAKVNTLLSASWDMTAKLWCL 66
L GHS V SL TP+ I+SAS+D +W L++ KL C
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNA------------LTSQKTHAIKLHCP 109
Query: 67 ESQQCKLTIRQHEMAVWGVIQLANGIIVTGCADKTIKLHSEEGEFLKTLTGHTDCVRGLA 126
+C +A G+ + ++ AD+ + + LTGH
Sbjct: 110 WVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNM-----PVSRVLTGHKGYASSCQ 164
Query: 127 VLND--TDFVSCSNDASIRVWDSTTGKCVHTM-----YGHPNFIYSVAA---HGDLITSG 176
+ D T ++ S D + +WD TTG+ + GH + S++ + ++ SG
Sbjct: 165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224
Query: 177 GEDQCVCVYQ----NKAQNSFMIPAMSVWAVAILPNSD-IVTGSSDGIVRVFSANPDRQA 231
D V ++ ++A ++ + +V P+ TGS DG R+F Q
Sbjct: 225 SCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284
Query: 232 E 232
+
Sbjct: 285 Q 285
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 63 LWCLESQQCKLTIRQHEMAVWGVIQLANGIIVTGCA-DKTIKL-HSEEGEFLKTLTGHTD 120
L+ S + + HE + V G ++ C+ D + + +S GE L TL GHT
Sbjct: 16 LYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTG 75
Query: 121 CVRGLAVLNDTDF-VSCSNDASIRVWDSTTGKCVHT 155
+ + V T + V+ S D SI++WD + G+CV T
Sbjct: 76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT 111
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 115 LTGHTDCVRGLAVLNDTDFV-SCSNDASIRVWDSTTGKCVHTMYGHPNFIYSV 166
LTGH + + + D + SCS D+S VW S G+ + T+ GH I+S+
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSI 80
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Query: 90 NGIIVTGCADKTIKL-HSEEGEFLKTLTGHTDCVRGLAVLNDTDFVSCSNDASIRVWD-- 146
N ++++ D T+++ H G GH+ + + + D +SCS D S+R+W
Sbjct: 259 NKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLK 318
Query: 147 STTGKCVHTMYGHPNFIYSVAAHGDLITSGGEDQCVCVYQNKAQNS 192
T + + G P F ++ G D V VY K NS
Sbjct: 319 QNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS 364
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 115 LTGHTDCVRGLAVLNDTD--FVSCSNDASIRVWDSTTGKCVHTMYGHPNFIYSVAAHG-D 171
L GH + L NDT+ +S S+D ++R+W G + YGH I S + G D
Sbjct: 243 LIGHHGPISVLE-FNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD 301
Query: 172 LITSGGEDQCVCVYQNKAQNSFMIPAMSV 200
+ S D V ++ K QN+ + A+S+
Sbjct: 302 KVISCSMDGSVRLWSLK-QNTLL--ALSI 327
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 8 LYGHSMDVRSLSVTPDGCILSASRDKSAKLWKPNDLSPGAKVNTLLSAS 56
YGHS + S S D ++S S D S +LW K NTLL+ S
Sbjct: 285 FYGHSQSIVSASWVGDDKVISCSMDGSVRLWS-------LKQNTLLALS 326
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 93 IVTGCADKTIKLHS-EEGEFLKTLTGHTDCVRGLAVLND-TDFVSCSNDASIRVWDSTTG 150
+++ D +K+ S ++G +TL GH V +A+++ + +S S D +IR+W+ TG
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 213
Query: 151 KCVHTM 156
+HT
Sbjct: 214 TTIHTF 219
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 93 IVTGCADKTIKLHS-EEGEFLKTLTGHTDCVRGLAVLND-TDFVSCSNDASIRVWDSTTG 150
+++ D +K+ S ++G +TL GH V +A+++ + +S S D +IR+W+ TG
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 210
Query: 151 KCVHTM 156
+HT
Sbjct: 211 TTIHTF 216
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 64/321 (19%), Positives = 119/321 (37%), Gaps = 75/321 (23%)
Query: 74 TIRQHEMAVWGVIQLANGIIVTGCADKTIKLHSEE------------------------- 108
+++ ++ +W + GI+ TG D+ IKL S +
Sbjct: 9 SLKLYKEKIWS-FDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR 67
Query: 109 --------GEFLKTLT---------------------GHTDCVRGLAVLNDTDFV-SCSN 138
G F T++ GH + V+G+A ND ++ +CS
Sbjct: 68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR 127
Query: 139 DASIRVWDSTTG----KCVHTMYGHPNFIYSVAAHGD--LITSGGEDQCVCVYQNKAQNS 192
D S+ +W++ +C+ + H + V H L+ S D V ++++ +
Sbjct: 128 DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW 187
Query: 193 FMIPAM-----SVWAVAILPNSDIV---TGSSDGIVRVFSANPDRQAEDAVQAQYAEEVK 244
+ + +VW+ + +GS D VRV+ D ED Q E +
Sbjct: 188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD--EDDQQEWVCEAI- 244
Query: 245 KLKSANEQEIGGVKVSDDGIVRVFSANPDRQAEDAVQAQYAEEVKKLKSANEQEIGGVKV 304
L +++++ V +G++ A+ + V ++ K+ EI VK
Sbjct: 245 -LPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKW 303
Query: 305 SDLPGKEVLYEPGKADGDVKM 325
+L GK +L G DG V
Sbjct: 304 LELNGKTIL-ATGGDDGIVNF 323
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 8 LYGHSMDVRSLSVTPDGC-ILSASRDKSAKLWKPNDLSPGAK 48
L GH+ V SL+++PDG + SA+ D++ +LW+ +L P +
Sbjct: 360 LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 401
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 8 LYGHSMDVRSLSVTPDGC-ILSASRDKSAKLWKPNDLSPGAK 48
L GH+ V SL+++PDG + SA+ D++ +LW+ +L P +
Sbjct: 371 LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 412
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 8 LYGHSMDVRSLSVTPDGC-ILSASRDKSAKLWKPNDLSP 45
L GH+ V SL+++PDG + SA+ D++ +LW+ +L P
Sbjct: 280 LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 318
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 20/137 (14%)
Query: 118 HTDCVRGLAVLND-TDFVSCSNDASIRVWDSTTGKCVHTMYGHPNFIYSVAA---HGDLI 173
H D V+ L+V +D T VS D S++VWD + + + H + + VAA +
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 174 TSGGEDQCVCVYQNKAQN---------SFMIPAMSVWAVAILPNSD--IVTGSSDGIVRV 222
S GED + ++ + S IP W P D G G V +
Sbjct: 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWH----PEKDDTFACGDETGNVSL 253
Query: 223 FS-ANPDRQAEDAVQAQ 238
+ NPD AV +Q
Sbjct: 254 VNIKNPDSAQTSAVHSQ 270
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 46 GAKVNTLLSASWDMTAKLWCLESQQCKLTIRQHEMAVWGV--IQLAN-GIIVTGCADKTI 102
G+KV +AS D TAK+W L S Q + I QH+ V + I+ N ++TG DKT+
Sbjct: 98 GSKV---FTASCDKTAKMWDLSSNQ-AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL 153
Query: 103 KL 104
K
Sbjct: 154 KF 155
>pdb|2VK2|A Chain A, Crystal Structure Of A Galactofuranose Binding Protein
Length = 306
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 160 PNFIYSVAAHGDLITSGGED--QCVCVYQNKAQNSFMIPA----MSVWAV------AILP 207
PN + GD S G++ + +N +N M+ A M + A+ + P
Sbjct: 158 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 217
Query: 208 NSDIVTGSSDGIVRVFSANPDRQAEDAVQ 236
DI+TGS DG+ ++ A D +A +V+
Sbjct: 218 GKDILTGSIDGVPDIYKAMMDGEANASVE 246
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 30/142 (21%)
Query: 15 VRSLSVTPDGCILSASRDKSAKLWKPNDLSPGAKVNTLLSASWDMTAKLWCLESQQCKLT 74
+RS + PDGC L G + +TL + WD+ A + + K
Sbjct: 100 IRSCKLLPDGCTLIV----------------GGEASTL--SIWDLAA-----PTPRIKAE 136
Query: 75 IRQHEMAVWGV-IQLANGIIVTGCADKTIK---LHSEEGEFLKTLTGHTDCVRGLAVLND 130
+ A + + I + + + C+D I LH++ ++ GHTD + + ND
Sbjct: 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHTDGASCIDISND 194
Query: 131 -TDFVSCSNDASIRVWDSTTGK 151
T + D ++R WD G+
Sbjct: 195 GTKLWTGGLDNTVRSWDLREGR 216
>pdb|3FCZ|A Chain A, Adaptive Protein Evolution Grants Organismal Fitness By
Improving Catalysis And Flexibility
pdb|3FCZ|B Chain B, Adaptive Protein Evolution Grants Organismal Fitness By
Improving Catalysis And Flexibility
Length = 222
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 206 LPNSDIVTGSSDGIVRVFSANPDRQAE---DAVQAQYAEEVKK--LKSANEQEIGGVKVS 260
+P+S +V +S G+V V S+ D+ + + V+ ++ + V + A+ IGG+K
Sbjct: 34 VPSSGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDAIITHAHADRIGGIKTL 93
Query: 261 DDGIVRVFSANPDRQAEDAVQAQYAEEVKKLKSANEQEIGGVKVSDL-PGK 310
+ ++ S AE A + Y E + L++ + G +KV PGK
Sbjct: 94 KERGIKAHST--ALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGK 142
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 22/103 (21%)
Query: 95 TGCADKTIKLHSEEGEFLKTLTGHTDCVRGLAVL--NDTDFVSCSNDASIRVWDSTTGKC 152
TG DK + L + GHT V +A ND S S D ++ VW+ G
Sbjct: 67 TGRVDKNVPL----------VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGL 116
Query: 153 VH-------TMYGHPNFIYSVAAHG---DLITSGGEDQCVCVY 185
V T+ GH + VA H +++ S G D + V+
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVW 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,775,152
Number of Sequences: 62578
Number of extensions: 738575
Number of successful extensions: 2411
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1730
Number of HSP's gapped (non-prelim): 266
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)