BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7058
(85 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 3 LLATTSADQTARIWNTED------FSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVA 56
+L + S D+T IW + F + + T + +V D A + ++ F +++S D
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 57 RLWNIETGEVDKEYSGHQKAITSLAF 82
RLW++ TG K + GHQ + S+AF
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAF 126
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 6 TTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
++S D+T R+W+ + + +Q V+ AF+ D++ +L+A ++ +LWNI
Sbjct: 93 SSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 3 LLATTSADQTARIW----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
++ + S D+T +W + ++ + + + +V D + D +F L+ S DG RL
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 59 WNIETGEVDKEYSGHQKAITSLAF 82
W++ TG + + GH K + S+AF
Sbjct: 113 WDLTTGTTTRRFVGHTKDVLSVAF 136
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS--KFLLTASSDGVARLWNI 61
+ + S D+T ++WNT ++ WV F+ +S +++ D + ++WN+
Sbjct: 143 IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 62 ETGEVDKEYSGH 73
++ + GH
Sbjct: 203 ANCKLKTNHIGH 214
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
D T R+W+ + R + + V AF+ D++ +++ S D +LWN
Sbjct: 107 DGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 3 LLATTSADQTARIW----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
++ + S D+T +W + ++ + + + +V D + D +F L+ S DG RL
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 59 WNIETGEVDKEYSGHQKAITSLAF 82
W++ TG + + GH K + S+AF
Sbjct: 90 WDLTTGTTTRRFVGHTKDVLSVAF 113
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS--KFLLTASSDGVARLWNI 61
+ + S D+T ++WNT ++ WV F+ +S +++ D + ++WN+
Sbjct: 120 IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 62 ETGEVDKEYSGH 73
++ + GH
Sbjct: 180 ANCKLKTNHIGH 191
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
D T R+W+ + R + + V AF+ D++ +++ S D +LWN
Sbjct: 84 DGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+A+ S D+T ++WN + L++ L T + VW AF+ D + + +AS D +LWN
Sbjct: 31 IASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RN 87
Query: 64 GEVDKEYSGHQKAITSLAFC 83
G++ + +GH ++ +AF
Sbjct: 88 GQLLQTLTGHSSSVRGVAFS 107
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+A+ S D+T ++WN + L++ L T + VW AF+ D + + +AS D +LWN
Sbjct: 154 IASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RN 210
Query: 64 GEVDKEYSGHQKAITSLAFC 83
G++ + +GH ++ +AF
Sbjct: 211 GQLLQTLTGHSSSVRGVAFS 230
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+A+ S D+T ++WN + L++ L T + VW AF+ D + + +AS D +LWN
Sbjct: 400 IASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RN 456
Query: 64 GEVDKEYSGHQKAITSLAFC 83
G++ + +GH ++ +AF
Sbjct: 457 GQLLQTLTGHSSSVRGVAFS 476
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+A+ S D+T ++WN L G ++ VW AF+ D + + +AS D +LWN
Sbjct: 318 IASASDDKTVKLWNRNGQHLQTLTGHSSS--VWGVAFSPDGQTIASASDDKTVKLWN-RN 374
Query: 64 GEVDKEYSGHQKAITSLAFC 83
G++ + +GH ++ +AF
Sbjct: 375 GQLLQTLTGHSSSVRGVAFS 394
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+A+ S D+T ++WN + L++ L T + VW AF+ D + + +AS D +LWN
Sbjct: 113 IASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RN 169
Query: 64 GEVDKEYSGHQKAITSLAFC 83
G++ + +GH ++ +AF
Sbjct: 170 GQLLQTLTGHSSSVWGVAFS 189
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+A+ S D+T ++WN + L++ L T + VW AF+ D + + +AS D +LWN
Sbjct: 277 IASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RN 333
Query: 64 GEVDKEYSGHQKAITSLAFC 83
G+ + +GH ++ +AF
Sbjct: 334 GQHLQTLTGHSSSVWGVAFS 353
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+A+ S D+T ++WN + L++ L T + V AF+ D + + +AS D +LWN
Sbjct: 195 IASASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 251
Query: 64 GEVDKEYSGHQKAITSLAF 82
G++ + +GH ++ +AF
Sbjct: 252 GQLLQTLTGHSSSVNGVAF 270
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+A+ S D+T ++WN + L++ L T + V AF+ D + + +AS D +LWN
Sbjct: 441 IASASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 497
Query: 64 GEVDKEYSGHQKAITSLAFC 83
G++ + +GH ++ +AF
Sbjct: 498 GQLLQTLTGHSSSVRGVAFS 517
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+A+ S D+T ++WN + L++ L T + V AF+ D + + +AS D +LWN
Sbjct: 72 IASASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 128
Query: 64 GEVDKEYSGHQKAITSLAFC 83
G++ + +GH ++ +AF
Sbjct: 129 GQLLQTLTGHSSSVWGVAFS 148
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+A+ S D+T ++WN + L++ L T + V AF+ D + + +AS D +LWN
Sbjct: 359 IASASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 415
Query: 64 GEVDKEYSGHQKAITSLAFC 83
G++ + +GH ++ +AF
Sbjct: 416 GQLLQTLTGHSSSVWGVAFS 435
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+A+ S D+T ++WN + L++ L T + V AF+ D + + +AS D +LWN
Sbjct: 482 IASASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 538
Query: 64 GEVDKEYSGHQKAITSLAFC 83
G++ + +GH ++ +AF
Sbjct: 539 GQLLQTLTGHSSSVWGVAFS 558
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
+A+ S D+T ++WN + L++ L T + VW AF+ D + + +ASSD +LWN
Sbjct: 523 IASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 39 AFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC 83
AF+ D + + +AS D +LWN G++ + +GH ++ +AF
Sbjct: 23 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS 66
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+ + S D+T ++WNT VR L ++R + A + +++ SSD RLW+IE
Sbjct: 269 IVSASGDRTIKVWNTSTCEFVRTL-NGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIEC 325
Query: 64 GEVDKEYSGHQKAITSLAF 82
G + GH++ + + F
Sbjct: 326 GACLRVLEGHEELVRCIRF 344
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 2 GLLATTSADQTARIWNTE---DFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
G++ T S D++ +W+ D +L R L R + D K++++AS D ++
Sbjct: 224 GMMVTCSKDRSIAVWDMASPTDITLRRVL--VGHRAAVNVV-DFDDKYIVSASGDRTIKV 280
Query: 59 WNIETGEVDKEYSGHQKAITSLAFCD 84
WN T E + +GH++ I L + D
Sbjct: 281 WNTSTCEFVRTLNGHKRGIACLQYRD 306
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKE 69
D T +IW+ R L T + V D + ++T SSD R+W++ TGE+
Sbjct: 152 DNTIKIWDKNTLECKRIL-TGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNT 208
Query: 70 YSGHQKAITSLAF 82
H +A+ L F
Sbjct: 209 LIHHCEAVLHLRF 221
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
L+ + S+D T R+W+ E + +R L ++ V D+K +++ + DG ++W++
Sbjct: 308 LVVSGSSDNTIRLWDIECGACLRVL-EGHEELV--RCIRFDNKRIVSGAYDGKIKVWDL 363
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
++TSAD+TA+IW+ + S + EL N V +AF+LD L T +G R+WN+
Sbjct: 1107 FSSTSADKTAKIWSFDLLSPLHELKGHNG-CVRCSAFSLDGILLATGDDNGEIRIWNVSD 1165
Query: 64 GEV 66
G++
Sbjct: 1166 GQL 1168
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 4 LATTSADQTARIWN--TEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
L ++S D ++WN T D+ ++ A+Q V D DS+ LL+ S DG ++WN+
Sbjct: 1025 LISSSEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRLLQDSR-LLSWSFDGTVKVWNV 1079
Query: 62 ETGEVDKEYSGHQKAITSLAF 82
TG ++++++ HQ + S A
Sbjct: 1080 ITGRIERDFTCHQGTVLSCAI 1100
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 3 LLATTSADQTARIWNTEDFSLVR-------ELGTANQR-WVWDAAFTLDSKFLLTASSDG 54
LLAT + RIWN D L+ E GTA WV D F+ DSK L++A G
Sbjct: 1148 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--G 1205
Query: 55 VARLWNIETGE 65
+ WN+ TG+
Sbjct: 1206 YLKWWNVATGD 1216
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+A+ AD+T +++ E + ++ A++ V AF+ D ++ T S+D ++W+ T
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 695
Query: 64 GEVDKEYSGHQKAITSLAF 82
G++ Y H + + F
Sbjct: 696 GKLVHTYDEHSEQVNCCHF 714
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL--TASSDGVARLWNI 61
+AT SAD+ +IW++ LV +++ V FT S LL T S+D +LW++
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQ-VNCCHFTNKSNHLLLATGSNDFFLKLWDL 737
Query: 62 ETGEVDKEYSGHQKAITSLAF 82
E GH ++ F
Sbjct: 738 NQKECRNTMFGHTNSVNHCRF 758
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 28 GTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE 65
G +++ V FT D K L+++S D V ++WN +TG+
Sbjct: 1006 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1043
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 8 SADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD 67
S D T ++WN + R+ T +Q V A + D+ + S+D A++W+ +
Sbjct: 1069 SFDGTVKVWNVITGRIERDF-TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1127
Query: 68 KEYSGHQKAITSLAF 82
E GH + AF
Sbjct: 1128 HELKGHNGCVRCSAF 1142
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LLAT S D ++W+ R + V F+ D + L + S+DG RLW++
Sbjct: 722 LLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
Query: 63 TG 64
+
Sbjct: 781 SA 782
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 34 WVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK 68
WV F+ D LTAS D R+W ET +V K
Sbjct: 891 WVHGVMFSPDGSSFLTASDDQTIRVW--ETKKVCK 923
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
++TSAD+TA+IW+ + S + EL N V +AF+LD L T +G R+WN+
Sbjct: 1100 FSSTSADKTAKIWSFDLLSPLHELKGHNG-CVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158
Query: 64 GEV 66
G++
Sbjct: 1159 GQL 1161
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 4 LATTSADQTARIWN--TEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
L ++S D ++WN T D+ ++ A+Q V D DS+ LL+ S DG ++WN+
Sbjct: 1018 LISSSEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRLLQDSR-LLSWSFDGTVKVWNV 1072
Query: 62 ETGEVDKEYSGHQKAITSLAF 82
TG ++++++ HQ + S A
Sbjct: 1073 ITGRIERDFTCHQGTVLSCAI 1093
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 3 LLATTSADQTARIWNTEDFSLVR-------ELGTANQR-WVWDAAFTLDSKFLLTASSDG 54
LLAT + RIWN D L+ E GTA WV D F+ DSK L++A G
Sbjct: 1141 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--G 1198
Query: 55 VARLWNIETGE 65
+ WN+ TG+
Sbjct: 1199 YLKWWNVATGD 1209
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+A+ AD+T +++ E + ++ A++ V AF+ D ++ T S+D ++W+ T
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688
Query: 64 GEVDKEYSGHQKAITSLAF 82
G++ Y H + + F
Sbjct: 689 GKLVHTYDEHSEQVNCCHF 707
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL--TASSDGVARLWNI 61
+AT SAD+ +IW++ LV +++ V FT S LL T S+D +LW++
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQ-VNCCHFTNKSNHLLLATGSNDFFLKLWDL 730
Query: 62 ETGEVDKEYSGHQKAITSLAF 82
E GH ++ F
Sbjct: 731 NQKECRNTMFGHTNSVNHCRF 751
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 28 GTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE 65
G +++ V FT D K L+++S D V ++WN +TG+
Sbjct: 999 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 8 SADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD 67
S D T ++WN + R+ T +Q V A + D+ + S+D A++W+ +
Sbjct: 1062 SFDGTVKVWNVITGRIERDF-TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1120
Query: 68 KEYSGHQKAITSLAF 82
E GH + AF
Sbjct: 1121 HELKGHNGCVRCSAF 1135
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LLAT S D ++W+ R + V F+ D + L + S+DG RLW++
Sbjct: 715 LLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
Query: 63 TG 64
+
Sbjct: 774 SA 775
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 34 WVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK 68
WV F+ D LTAS D R+W ET +V K
Sbjct: 884 WVHGVMFSPDGSSFLTASDDQTIRVW--ETKKVCK 916
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
++TSAD+TA+IW+ + + EL N V +AF++DS L T +G R+WN+
Sbjct: 1106 FSSTSADKTAKIWSFDLLLPLHELRGHNG-CVRCSAFSVDSTLLATGDDNGEIRIWNVSN 1164
Query: 64 GEV 66
GE+
Sbjct: 1165 GEL 1167
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+A+ AD+T +++ E + E+ A++ V AF+ D +F+ T S D ++WN T
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEI-KAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMT 694
Query: 64 GEVDKEYSGHQKAITSLAFCD 84
GE+ Y H + + F +
Sbjct: 695 GELVHTYDEHSEQVNCCHFTN 715
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 3 LLATTSADQTARIWNTEDFSLVR------ELGTANQR-WVWDAAFTLDSKFLLTASSDGV 55
LLAT + RIWN + L+ E G A WV D F+ D K L++A G
Sbjct: 1147 LLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--GY 1204
Query: 56 ARLWNIETGEVDKEY 70
+ WN+ TGE + +
Sbjct: 1205 IKWWNVVTGESSQTF 1219
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
L ++S D ++WN + + G +Q V D +S+ LL+ S DG ++WNI T
Sbjct: 1024 LISSSDDAEIQVWNWQLDKCIFLRG--HQETVKDFRLLKNSR-LLSWSFDGTVKVWNIIT 1080
Query: 64 GEVDKEYSGHQKAITSLAFCD 84
G +K++ HQ + S CD
Sbjct: 1081 GNKEKDFVCHQGTVLS---CD 1098
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL--TASSDGVARLWN 60
+AT S D+ +IWN+ LV +++ V FT S LL T SSD +LW+
Sbjct: 677 FIATCSVDKKVKIWNSMTGELVHTYDEHSEQ-VNCCHFTNSSHHLLLATGSSDCFLKLWD 735
Query: 61 IETGEVDKEYSGHQKAITSLAF 82
+ E GH ++ F
Sbjct: 736 LNQKECRNTMFGHTNSVNHCRF 757
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 15 IWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK 68
+WNT+ S V + + WV F+ D LT+S D RLW ET +V K
Sbjct: 872 LWNTDSRSKVADC-RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLW--ETKKVCK 922
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK--EYSGHQKAI 77
+++ VW FT D K L+++S D ++WN ++DK GHQ+ +
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWN---WQLDKCIFLRGHQETV 1053
Score = 29.3 bits (64), Expect = 0.54, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LLAT S+D ++W+ R + V F+ D K L + S+DG +LW+
Sbjct: 721 LLATGSSDCFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDAT 779
Query: 63 TGEVDKEYSGHQ 74
+ K + Q
Sbjct: 780 SANERKSINVKQ 791
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 43.9 bits (102), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
LA++SAD+ +IW D + + + ++ + D A++ DS L++AS D ++W++ +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 102
Query: 64 GEVDKEYSGHQKAITSLAF 82
G+ K GH + F
Sbjct: 103 GKCLKTLKGHSNYVFCCNF 121
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ ++S D RIW+T ++ L + V F+ + K++L A+ D +LW+
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Query: 63 TGEVDKEYSGHQ 74
G+ K Y+GH+
Sbjct: 229 KGKCLKTYTGHK 240
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D+T +IW+ ++ L + +V+ F S +++ S D R+W+++
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG+ K H ++++ F
Sbjct: 144 TGKCLKTLPAHSDPVSAVHF 163
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
+LA T D T ++W+ ++ L G N+++ A F++ K++++ S D + +WN
Sbjct: 213 ILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 61 IETGEVDKEYSGHQKAITSLA 81
++T E+ ++ GH + S A
Sbjct: 272 LQTKEIVQKLQGHTDVVISTA 292
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S D++ RIW+ + ++ L A+ V F D ++++S DG+ R+W+
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 63 TGEVDK 68
+G+ K
Sbjct: 186 SGQCLK 191
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
F+ + ++L ++S+D + ++W G+ +K SGH+ I+ +A+
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
LA++SAD+ +IW D + + + ++ + D A++ DS L++AS D ++W++ +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 64 GEVDKEYSGHQKAITSLAF 82
G+ K GH + F
Sbjct: 100 GKCLKTLKGHSNYVFCCNF 118
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ ++S D RIW+T ++ L + V F+ + K++L A+ D +LW+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Query: 63 TGEVDKEYSGHQ 74
G+ K Y+GH+
Sbjct: 226 KGKCLKTYTGHK 237
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D+T +IW+ ++ L + +V+ F S +++ S D R+W+++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG+ K H ++++ F
Sbjct: 141 TGKCLKTLPAHSDPVSAVHF 160
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
+LA T D T ++W+ ++ L G N+++ A F++ K++++ S D + +WN
Sbjct: 210 ILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 61 IETGEVDKEYSGHQKAITSLA 81
++T E+ ++ GH + S A
Sbjct: 269 LQTKEIVQKLQGHTDVVISTA 289
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S D++ RIW+ + ++ L A+ V F D ++++S DG+ R+W+
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 63 TGEVDK 68
+G+ K
Sbjct: 183 SGQCLK 188
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
F+ + ++L ++S+D + ++W G+ +K SGH+ I+ +A+
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
LA++SAD+ +IW D + + + ++ + D A++ DS L++AS D ++W++ +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 64 GEVDKEYSGHQKAITSLAF 82
G+ K GH + F
Sbjct: 100 GKCLKTLKGHSNYVFCCNF 118
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ ++S D RIW+T ++ L + V F+ + K++L A+ D +LW+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Query: 63 TGEVDKEYSGHQ 74
G+ K Y+GH+
Sbjct: 226 KGKCLKTYTGHK 237
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D+T +IW+ ++ L + +V+ F S +++ S D R+W+++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG+ K H ++++ F
Sbjct: 141 TGKCLKTLPAHSDPVSAVHF 160
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
+LA T D T ++W+ ++ L G N+++ A F++ K++++ S D + +WN
Sbjct: 210 ILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 61 IETGEVDKEYSGHQKAITSLA 81
++T E+ ++ GH + S A
Sbjct: 269 LQTKEIVQKLQGHTDVVISTA 289
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S D++ RIW+ + ++ L A+ V F D ++++S DG+ R+W+
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 63 TGEVDK 68
+G+ K
Sbjct: 183 SGQCLK 188
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
F+ + ++L ++S+D + ++W G+ +K SGH+ I+ +A+
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
LA++SAD+ +IW D + + + ++ + D A++ DS L++AS D ++W++ +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 102
Query: 64 GEVDKEYSGHQKAITSLAF 82
G+ K GH + F
Sbjct: 103 GKCLKTLKGHSNYVFCCNF 121
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ ++S D RIW+T ++ L + V F+ + K++L A+ D +LW+
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Query: 63 TGEVDKEYSGHQ 74
G+ K Y+GH+
Sbjct: 229 KGKCLKTYTGHK 240
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D+T +IW+ ++ L + +V+ F S +++ S D R+W+++
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG+ K H ++++ F
Sbjct: 144 TGKCLKTLPAHSDPVSAVHF 163
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
+LA T D T ++W+ ++ L G N+++ A F++ K++++ S D + +WN
Sbjct: 213 ILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 61 IETGEVDKEYSGHQKAITSLA 81
++T E+ ++ GH + S A
Sbjct: 272 LQTKEIVQKLQGHTDVVISTA 292
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S D++ RIW+ + ++ L A+ V F D ++++S DG+ R+W+
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 63 TGEVDK 68
+G+ K
Sbjct: 186 SGQCLK 191
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
F+ + ++L ++S+D + ++W G+ +K SGH+ I+ +A+
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
LA++SAD+ +IW D + + + ++ + D A++ DS L++AS D ++W++ +
Sbjct: 34 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 92
Query: 64 GEVDKEYSGHQKAITSLAF 82
G+ K GH + F
Sbjct: 93 GKCLKTLKGHSNYVFCCNF 111
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ ++S D RIW+T ++ L + V F+ + K++L A+ D +LW+
Sbjct: 159 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 218
Query: 63 TGEVDKEYSGHQ 74
G+ K Y+GH+
Sbjct: 219 KGKCLKTYTGHK 230
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D+T +IW+ ++ L + +V+ F S +++ S D R+W+++
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG+ K H ++++ F
Sbjct: 134 TGKCLKTLPAHSDPVSAVHF 153
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
+LA T D T ++W+ ++ L G N+++ A F++ K++++ S D + +WN
Sbjct: 203 ILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
Query: 61 IETGEVDKEYSGHQKAITSLA 81
++T E+ ++ GH + S A
Sbjct: 262 LQTKEIVQKLQGHTDVVISTA 282
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S D++ RIW+ + ++ L A+ V F D ++++S DG+ R+W+
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 175
Query: 63 TGEVDK 68
+G+ K
Sbjct: 176 SGQCLK 181
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
F+ + ++L ++S+D + ++W G+ +K SGH+ I+ +A+
Sbjct: 27 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 69
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
LA++SAD+ +IW D + + + ++ + D A++ DS L++AS D ++W++ +
Sbjct: 37 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 95
Query: 64 GEVDKEYSGHQKAITSLAF 82
G+ K GH + F
Sbjct: 96 GKCLKTLKGHSNYVFCCNF 114
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ ++S D RIW+T ++ L + V F+ + K++L A+ D +LW+
Sbjct: 162 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 221
Query: 63 TGEVDKEYSGHQ 74
G+ K Y+GH+
Sbjct: 222 KGKCLKTYTGHK 233
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D+T +IW+ ++ L + +V+ F S +++ S D R+W+++
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG+ K H ++++ F
Sbjct: 137 TGKCLKTLPAHSDPVSAVHF 156
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
+LA T D T ++W+ ++ L G N+++ A F++ K++++ S D + +WN
Sbjct: 206 ILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
Query: 61 IETGEVDKEYSGHQKAITSLA 81
++T E+ ++ GH + S A
Sbjct: 265 LQTKEIVQKLQGHTDVVISTA 285
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S D++ RIW+ + ++ L A+ V F D ++++S DG+ R+W+
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 178
Query: 63 TGEVDK 68
+G+ K
Sbjct: 179 SGQCLK 184
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
F+ + ++L ++S+D + ++W G+ +K SGH+ I+ +A+
Sbjct: 30 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 72
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
LA++SAD+ +IW D + + + ++ + D A++ DS L++AS D ++W++ +
Sbjct: 55 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 113
Query: 64 GEVDKEYSGHQKAITSLAF 82
G+ K GH + F
Sbjct: 114 GKCLKTLKGHSNYVFCCNF 132
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ ++S D RIW+T ++ L + V F+ + K++L A+ D +LW+
Sbjct: 180 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 239
Query: 63 TGEVDKEYSGHQ 74
G+ K Y+GH+
Sbjct: 240 KGKCLKTYTGHK 251
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D+T +IW+ ++ L + +V+ F S +++ S D R+W+++
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG+ K H ++++ F
Sbjct: 155 TGKCLKTLPAHSDPVSAVHF 174
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
+LA T D T ++W+ ++ L G N+++ A F++ K++++ S D + +WN
Sbjct: 224 ILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 282
Query: 61 IETGEVDKEYSGHQKAITSLA 81
++T E+ ++ GH + S A
Sbjct: 283 LQTKEIVQKLQGHTDVVISTA 303
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S D++ RIW+ + ++ L A+ V F D ++++S DG+ R+W+
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 196
Query: 63 TGEVDK 68
+G+ K
Sbjct: 197 SGQCLK 202
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
F+ + ++L ++S+D + ++W G+ +K SGH+ I+ +A+
Sbjct: 48 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 90
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
LA++SAD+ +IW D + + + ++ + D A++ DS L++AS D ++W++ +
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 96
Query: 64 GEVDKEYSGHQKAITSLAF 82
G+ K GH + F
Sbjct: 97 GKCLKTLKGHSNYVFCCNF 115
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ ++S D RIW+T ++ L + V F+ + K++L A+ D +LW+
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Query: 63 TGEVDKEYSGHQ 74
G+ K Y+GH+
Sbjct: 223 KGKCLKTYTGHK 234
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D+T +IW+ ++ L + +V+ F S +++ S D R+W+++
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG+ K H ++++ F
Sbjct: 138 TGKCLKTLPAHSDPVSAVHF 157
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
+LA T D T ++W+ ++ L G N+++ A F++ K++++ S D + +WN
Sbjct: 207 ILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Query: 61 IETGEVDKEYSGHQKAITSLA 81
++T E+ ++ GH + S A
Sbjct: 266 LQTKEIVQKLQGHTDVVISTA 286
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S D++ RIW+ + ++ L A+ V F D ++++S DG+ R+W+
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 63 TGEVDK 68
+G+ K
Sbjct: 180 SGQCLK 185
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
F+ + ++L ++S+D + ++W G+ +K SGH+ I+ +A+
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
LA++SAD+ +IW D + + + ++ + D A++ DS L++AS D ++W++ +
Sbjct: 60 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 118
Query: 64 GEVDKEYSGHQKAITSLAF 82
G+ K GH + F
Sbjct: 119 GKCLKTLKGHSNYVFCCNF 137
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ ++S D RIW+T ++ L + V F+ + K++L A+ D +LW+
Sbjct: 185 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 244
Query: 63 TGEVDKEYSGHQ 74
G+ K Y+GH+
Sbjct: 245 KGKCLKTYTGHK 256
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D+T +IW+ ++ L + +V+ F S +++ S D R+W+++
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG+ K H ++++ F
Sbjct: 160 TGKCLKTLPAHSDPVSAVHF 179
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
+LA T D T ++W+ ++ L G N+++ A F++ K++++ S D + +WN
Sbjct: 229 ILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
Query: 61 IETGEVDKEYSGHQKAITSLA 81
++T E+ ++ GH + S A
Sbjct: 288 LQTKEIVQKLQGHTDVVISTA 308
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S D++ RIW+ + ++ L A+ V F D ++++S DG+ R+W+
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 201
Query: 63 TGEVDK 68
+G+ K
Sbjct: 202 SGQCLK 207
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
F+ + ++L ++S+D + ++W G+ +K SGH+ I+ +A+
Sbjct: 53 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 95
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
LA++SAD+ +IW D + + + ++ + D A++ DS L++AS D ++W++ +
Sbjct: 39 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 97
Query: 64 GEVDKEYSGHQKAITSLAF 82
G+ K GH + F
Sbjct: 98 GKCLKTLKGHSNYVFCCNF 116
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ ++S D RIW+T ++ L + V F+ + K++L A+ D +LW+
Sbjct: 164 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 223
Query: 63 TGEVDKEYSGHQ 74
G+ K Y+GH+
Sbjct: 224 KGKCLKTYTGHK 235
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D+T +IW+ ++ L + +V+ F S +++ S D R+W+++
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG+ K H ++++ F
Sbjct: 139 TGKCLKTLPAHSDPVSAVHF 158
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
+LA T D T ++W+ ++ L G N+++ A F++ K++++ S D + +WN
Sbjct: 208 ILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
Query: 61 IETGEVDKEYSGHQKAITSLA 81
++T E+ ++ GH + S A
Sbjct: 267 LQTKEIVQKLQGHTDVVISTA 287
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S D++ RIW+ + ++ L A+ V F D ++++S DG+ R+W+
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 180
Query: 63 TGEVDK 68
+G+ K
Sbjct: 181 SGQCLK 186
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
F+ + ++L ++S+D + ++W G+ +K SGH+ I+ +A+
Sbjct: 32 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 74
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
LA++SAD+ +IW D + + + ++ + D A++ DS L++AS D ++W++ +
Sbjct: 43 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 101
Query: 64 GEVDKEYSGHQKAITSLAF 82
G+ K GH + F
Sbjct: 102 GKCLKTLKGHSNYVFCCNF 120
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ ++S D RIW+T ++ L + V F+ + K++L A+ D +LW+
Sbjct: 168 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 227
Query: 63 TGEVDKEYSGHQ 74
G+ K Y+GH+
Sbjct: 228 KGKCLKTYTGHK 239
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D+T +IW+ ++ L + +V+ F S +++ S D R+W+++
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG+ K H ++++ F
Sbjct: 143 TGKCLKTLPAHSDPVSAVHF 162
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
+LA T D T ++W+ ++ L G N+++ A F++ K++++ S D + +WN
Sbjct: 212 ILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
Query: 61 IETGEVDKEYSGHQKAITSLA 81
++T E+ ++ GH + S A
Sbjct: 271 LQTKEIVQKLQGHTDVVISTA 291
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S D++ RIW+ + ++ L A+ V F D ++++S DG+ R+W+
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 184
Query: 63 TGEVDK 68
+G+ K
Sbjct: 185 SGQCLK 190
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
F+ + ++L ++S+D + ++W G+ +K SGH+ I+ +A+
Sbjct: 36 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 78
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
LA++SAD+ +IW D + + + ++ + D A++ DS L++AS D ++W++ +
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 96
Query: 64 GEVDKEYSGHQKAITSLAF 82
G+ K GH + F
Sbjct: 97 GKCLKTLKGHSNYVFCCNF 115
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ ++S D RIW+T ++ L + V F+ + K++L A+ D +LW+
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Query: 63 TGEVDKEYSGHQ 74
G+ K Y+GH+
Sbjct: 223 KGKCLKTYTGHK 234
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D+T +IW+ ++ L + +V+ F S +++ S D R+W+++
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG+ K H ++++ F
Sbjct: 138 TGKCLKTLPAHSDPVSAVHF 157
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
+LA T D T ++W+ ++ L G N+++ A F++ K++++ S D + +WN
Sbjct: 207 ILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Query: 61 IETGEVDKEYSGHQKAITSLA 81
++T E+ ++ GH + S A
Sbjct: 266 LQTKEIVQKLQGHTDVVISTA 286
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S D++ RIW+ + ++ L A+ V F D ++++S DG+ R+W+
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 63 TGEVDK 68
+G+ K
Sbjct: 180 SGQCLK 185
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
F+ + ++L ++S+D + ++W G+ +K SGH+ I+ +A+
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
LA++SAD+ +IW D + + + ++ + D A++ DS L++AS D ++W++ +
Sbjct: 62 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 120
Query: 64 GEVDKEYSGHQKAITSLAF 82
G+ K GH + F
Sbjct: 121 GKCLKTLKGHSNYVFCCNF 139
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ ++S D RIW+T ++ L + V F+ + K++L A+ D +LW+
Sbjct: 187 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 246
Query: 63 TGEVDKEYSGHQ 74
G+ K Y+GH+
Sbjct: 247 KGKCLKTYTGHK 258
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D+T +IW+ ++ L + +V+ F S +++ S D R+W+++
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG+ K H ++++ F
Sbjct: 162 TGKCLKTLPAHSDPVSAVHF 181
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
+LA T D T ++W+ ++ L G N+++ A F++ K++++ S D + +WN
Sbjct: 231 ILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289
Query: 61 IETGEVDKEYSGHQKAITSLA 81
++T E+ ++ GH + S A
Sbjct: 290 LQTKEIVQKLQGHTDVVISTA 310
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S D++ RIW+ + ++ L A+ V F D ++++S DG+ R+W+
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 203
Query: 63 TGEVDK 68
+G+ K
Sbjct: 204 SGQCLK 209
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
F+ + ++L ++S+D + ++W G+ +K SGH+ I+ +A+
Sbjct: 55 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 97
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
LA++SAD+ +IW D + + + ++ + D A++ DS L++AS D ++W++ +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 102
Query: 64 GEVDKEYSGHQKAITSLAF 82
G+ K GH + F
Sbjct: 103 GKCLKTLKGHSNYVFCCNF 121
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ ++S D RIW+T ++ L + V F+ + K++L A+ D +LW+
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Query: 63 TGEVDKEYSGHQ 74
G+ K Y+GH+
Sbjct: 229 KGKCLKTYTGHK 240
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D+T +IW+ ++ L + +V+ F S +++ S D R+W+++
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG+ K H ++++ F
Sbjct: 144 TGKCLKTLPAHSDPVSAVHF 163
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
+LA T D T ++W+ ++ L G N+++ A F++ K++++ S D + +WN
Sbjct: 213 ILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 61 IETGEVDKEYSGHQKAITSLA 81
++T E+ ++ GH + S A
Sbjct: 272 LQTKEIVQKLQGHTDVVISTA 292
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S D++ RIW+ + ++ L A+ V F D ++++S DG+ R+W+
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 63 TGEVDK 68
+G+ K
Sbjct: 186 SGQCLK 191
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
F+ + ++L ++S+D + ++W G+ +K SGH+ I+ +A+
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
LA++SAD+ +IW D + + + ++ + D A++ DS L++AS D ++W++ +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 64 GEVDKEYSGHQKAITSLAF 82
G+ K GH + F
Sbjct: 100 GKCLKTLKGHSNYVFCCNF 118
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ ++S D RIW+T ++ L + V F+ + K++L A+ D +LW+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYS 225
Query: 63 TGEVDKEYSGHQ 74
G+ K Y+GH+
Sbjct: 226 KGKCLKTYTGHK 237
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D+T +IW+ ++ L + +V+ F S +++ S D R+W+++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG K H ++++ F
Sbjct: 141 TGMCLKTLPAHSDPVSAVHF 160
Score = 33.5 bits (75), Expect = 0.033, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S D++ RIW+ + ++ L A+ V F D ++++S DG+ R+W+
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 63 TGEVDK 68
+G+ K
Sbjct: 183 SGQCLK 188
Score = 33.1 bits (74), Expect = 0.046, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
+LA T D ++W+ ++ L G N+++ A F++ K++++ S D + +WN
Sbjct: 210 ILAAT-LDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Query: 61 IETGEVDKEYSGHQKAITSLA 81
++T E+ ++ GH + S A
Sbjct: 269 LQTKEIVQKLQGHTDVVISTA 289
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 6 TTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE 65
++SA Q+ +++L+ L + + V F+ + ++L ++S+D + ++W G+
Sbjct: 1 SSSATQSKPTPVKPNYALMFTLA-GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 59
Query: 66 VDKEYSGHQKAITSLAF 82
+K SGH+ I+ +A+
Sbjct: 60 FEKTISGHKLGISDVAW 76
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
LA++SAD+ +IW D + + + ++ + D A++ DS L++AS D ++W++ +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 64 GEVDKEYSGHQKAITSLAF 82
G+ K GH + F
Sbjct: 100 GKCLKTLKGHSNYVFCCNF 118
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ ++S D RIW+T ++ L + V F+ + K++L A+ D +LW+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Query: 63 TGEVDKEYSGHQ 74
G+ K Y+GH+
Sbjct: 226 KGKCLKTYTGHK 237
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D+T +IW+ ++ L + +V+ F S +++ S D R+W+++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG K H ++++ F
Sbjct: 141 TGMCLKTLPAHSDPVSAVHF 160
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
+LA T D T ++W+ ++ L G N+++ A F++ K++++ S D + +WN
Sbjct: 210 ILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Query: 61 IETGEVDKEYSGHQKAITSLA 81
++T E+ ++ GH + S A
Sbjct: 269 LQTKEIVQKLQGHTDVVISTA 289
Score = 33.5 bits (75), Expect = 0.033, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S D++ RIW+ + ++ L A+ V F D ++++S DG+ R+W+
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 63 TGEVDK 68
+G+ K
Sbjct: 183 SGQCLK 188
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 6 TTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE 65
++SA Q+ +++L+ L + + V F+ + ++L ++S+D + ++W G+
Sbjct: 1 SSSATQSKPTPVKPNYALMFTLA-GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 59
Query: 66 VDKEYSGHQKAITSLAF 82
+K SGH+ I+ +A+
Sbjct: 60 FEKTISGHKLGISDVAW 76
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 3 LLATTSADQTARIWN-TED---FSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
++ + S D++ +W T+D + + + T + +V D + D +F L+ S DG RL
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 59 WNIETGEVDKEYSGHQKAITSLAF 82
W++ G + + GH K + S+AF
Sbjct: 457 WDLAAGVSTRRFVGHTKDVLSVAF 480
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 4 LATTSADQTARIWNT--EDFSLVRELGTANQRWVWDAAFTLDS--KFLLTASSDGVARLW 59
+ + S D+T ++WNT E + E G ++ WV F+ ++ +++AS D ++W
Sbjct: 487 IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW 546
Query: 60 NIETGEVDKEYSGHQKAITSLA 81
N+ ++ +GH ++++A
Sbjct: 547 NLSNCKLRSTLAGHTGYVSTVA 568
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+ + S D+T ++WN + L R + +V A + D + DGV LW++
Sbjct: 534 IVSASWDKTVKVWNLSNCKL-RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592
Query: 64 GEVDKEYSGHQKAITSLAFC 83
G+ K YS ++ A C
Sbjct: 593 GK--KLYSLEANSVIH-ALC 609
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 35 VWDAAFTLDSKFLLTASSDGVARLWN 60
V AF+LD++ +++AS D +LWN
Sbjct: 475 VLSVAFSLDNRQIVSASRDRTIKLWN 500
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LLA+ SAD T ++W+ + F +R + + V + + +++AS D ++W ++
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHN-VSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
Query: 63 TGEVDKEYSGHQK 75
TG K ++GH++
Sbjct: 223 TGYCVKTFTGHRE 235
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L + S D+T ++W+ + L + WV F KF+L+ + D R+W+ +
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTL-VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368
Query: 63 TGEVDKEYSGHQKAITSLAF 82
K + H+ +TSL F
Sbjct: 369 NKRCMKTLNAHEHFVTSLDF 388
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
++ + S D T ++W+ E R L + V D +F K L + S+D +LW+ +
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 63 TGEVDKEYSGHQKAITSLA 81
E + GH ++S++
Sbjct: 181 GFECIRTMHGHDHNVSSVS 199
Score = 33.5 bits (75), Expect = 0.030, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+ + S D+T ++W + V+ T ++ WV D + + S+D R+W + T
Sbjct: 207 IVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
Query: 64 GEVDKEYSGHQKAITSLAF 82
E E H+ + +++
Sbjct: 266 KECKAELREHRHVVECISW 284
Score = 32.3 bits (72), Expect = 0.076, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 47 LLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
+++AS D ++W+ ETG+ ++ GH ++ ++F
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 158
Score = 30.0 bits (66), Expect = 0.30, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 19/99 (19%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQ-----RWVWDAAFTLDSK------------ 45
L+A+ S DQT R+W EL W +++++ S+
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307
Query: 46 --FLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
FLL+ S D ++W++ TG GH + + F
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
LA +SAD+ +IW D + + + ++ + D A++ DS L++AS D ++W++ +
Sbjct: 41 LAASSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 64 GEVDKEYSGHQKAITSLAF 82
G+ K GH + F
Sbjct: 100 GKCLKTLKGHSNYVFCCNF 118
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ ++S D RIW+T ++ L + V F+ + K++L A+ D +LW+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Query: 63 TGEVDKEYSGHQ 74
G+ K Y+GH+
Sbjct: 226 KGKCLKTYTGHK 237
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D+T +IW+ ++ L + +V+ F S +++ S D R+W+++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG+ K H ++++ F
Sbjct: 141 TGKCLKTLPAHSDPVSAVHF 160
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
+LA T D T ++W+ ++ L G N+++ A F++ K++++ S D + +WN
Sbjct: 210 ILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 61 IETGEVDKEYSGHQKAITSLA 81
++T E+ ++ GH + S A
Sbjct: 269 LQTKEIVQKLQGHTDVVISTA 289
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S D++ RIW+ + ++ L A+ V F D ++++S DG+ R+W+
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 63 TGEVDK 68
+G+ K
Sbjct: 183 SGQCLK 188
Score = 29.6 bits (65), Expect = 0.41, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 27/43 (62%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
F+ + ++L +S+D + ++W G+ +K SGH+ I+ +A+
Sbjct: 34 FSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
+L + +AD T +IW+ + ++ L N+ + F++T+S DG +LW+++
Sbjct: 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390
Query: 63 TGE 65
TGE
Sbjct: 391 TGE 393
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+ + S D + R+W+ E + + L T +Q + L L++ ++D ++W+I+T
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTL-TGHQSLT--SGMELKDNILVSGNADSTVKIWDIKT 348
Query: 64 GEVDKEYSG---HQKAITSLAF 82
G+ + G HQ A+T L F
Sbjct: 349 GQCLQTLQGPNKHQSAVTCLQF 370
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 3 LLATTSADQTARIWNTEDFSLVREL--GTANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
++ + S D+T ++WN E + L T+ R L K +++ S D R+W+
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVR-----CMHLHEKRVVSGSRDATLRVWD 225
Query: 61 IETGEVDKEYSGHQKAITSLAF 82
IETG+ GH A+ + +
Sbjct: 226 IETGQCLHVLMGHVAAVRCVQY 247
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKE 69
D ++W+ E + + L R V+ F D +++ S D R+W++ETG
Sbjct: 258 DFMVKVWDPETETCLHTLQGHTNR-VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT 314
Query: 70 YSGHQKAITSLAFCD 84
+GHQ + + D
Sbjct: 315 LTGHQSLTSGMELKD 329
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 4 LATTSADQTARIWNTEDFSLVREL--GTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
+ + S D T R+W+ E + L A R V D + +++ + D + ++W+
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV-----QYDGRRVVSGAYDFMVKVWDP 266
Query: 62 ETGEVDKEYSGHQKAITSLAF 82
ET GH + SL F
Sbjct: 267 ETETCLHTLQGHTNRVYSLQF 287
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 4 LATTSADQTARIW--NTEDFSLVRELGTANQR------WVWDAAFTLDSKFLLTASSDGV 55
+ +TS D+T W N + S G ++R +V D A + + F ++AS D
Sbjct: 31 VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHS 90
Query: 56 ARLWNIETGEVDKEYSGHQKAITSLAF 82
RLWN++ G+ ++ GH K + S+AF
Sbjct: 91 LRLWNLQNGQCQYKFLGHTKDVLSVAF 117
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFT--LDSKFLLTASSDGVARLWNIETGEVD 67
D R+WN + + A+ WV F+ LD+ +++ D + ++W++ TG +
Sbjct: 130 DNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV 189
Query: 68 KEYSGHQKAITSL 80
+ GH +TS+
Sbjct: 190 TDLKGHTNYVTSV 202
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKE 69
D ++W+ LV +L + +V + D ++ DGVARLW++ GE E
Sbjct: 175 DNLVKVWDLATGRLVTDL-KGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSE 233
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
D + R+WN ++ + + + V AF+ D++ +++ D R+WN++
Sbjct: 88 DHSLRLWNLQNGQCQYKF-LGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK 139
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 18/96 (18%)
Query: 4 LATTSADQTARIWNTEDFSLVREL------GTANQRWVWDAAFTLDSKFLLTASSDGVAR 57
+A S D+ R+W++E LV L GT ++ V+ FT D + +++ S D +
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281
Query: 58 LWNIE------------TGEVDKEYSGHQKAITSLA 81
LWN++ +G + Y GH+ + S+A
Sbjct: 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 317
Score = 37.7 bits (86), Expect = 0.001, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 17/98 (17%)
Query: 2 GLLATTSADQTARIWNTEDFSLVRELG---TANQR--------------WVWDAAFTLDS 44
G T ++T +++ D SLV L AN+ ++ F+ D
Sbjct: 76 GEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 135
Query: 45 KFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
KFL T + D + R+W+IE ++ GH++ I SL +
Sbjct: 136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY 173
Score = 32.0 bits (71), Expect = 0.083, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 16/90 (17%)
Query: 4 LATTSADQTARIWNTE----DFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLW 59
L + S D+T RIW+ +L E G A D K++ S D R+W
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV-----AVSPGDGKYIAAGSLDRAVRVW 234
Query: 60 NIETG----EVDKEY---SGHQKAITSLAF 82
+ ETG +D E +GH+ ++ S+ F
Sbjct: 235 DSETGFLVERLDSENESGTGHKDSVYSVVF 264
Score = 29.3 bits (64), Expect = 0.59, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTAN-----------QRWVWDAAFTLDSKFLLTASS 52
+ + S D++ ++WN ++ + + T N + +V A T + +++L+ S
Sbjct: 271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 330
Query: 53 DGVARLWNIETGEVDKEYSGHQKAITSLAFCD 84
D W+ ++G GH+ ++ S+A +
Sbjct: 331 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+A+ SAD+T +IWN + + + + + L++ S++G N E
Sbjct: 254 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL 313
Query: 64 GEVDKEYSGHQKAITSLA 81
G +D+ GH KAIT+L+
Sbjct: 314 GSIDQVRYGHNKAITALS 331
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 3 LLATTSADQTARIWNTED------FSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVA 56
L A+T D T ++N D F A+ V+ ++ D + +AS+D
Sbjct: 204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI 263
Query: 57 RLWNIETGEVDK 68
++WN+ T +V+K
Sbjct: 264 KIWNVATLKVEK 275
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 3 LLATTSADQTARIW----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
LL + S D+T W + + F + + V D T D + L+AS D RL
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 59 WNIETGEVDKEYSGHQKAITSL 80
W++ TGE + + GH+ + S+
Sbjct: 92 WDVATGETYQRFVGHKSDVMSV 113
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELG----TANQRWVWDAAFTLDSKFLLTASSDGVARL 58
++ + S D+T ++W + L LG + R V + DS +++A +D + +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 59 WNIETGEVDKEYSGHQKAITSL 80
WN+ +++ ++ GH I +L
Sbjct: 181 WNLNQFQIEADFIGHNSNINTL 202
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 3 LLATTSADQTARIW----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
LL + S D+T W + + F + + V D T D + L+AS D RL
Sbjct: 26 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 85
Query: 59 WNIETGEVDKEYSGHQKAITSL 80
W++ TGE + + GH+ + S+
Sbjct: 86 WDVATGETYQRFVGHKSDVMSV 107
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELG----TANQRWVWDAAFTLDSKFLLTASSDGVARL 58
++ + S D+T ++W + L LG + R V + DS +++A +D + +
Sbjct: 115 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 174
Query: 59 WNIETGEVDKEYSGHQKAITSL 80
WN+ +++ ++ GH I +L
Sbjct: 175 WNLNQFQIEADFIGHNSNINTL 196
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 3 LLATTSADQTARIW----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
LL + S D+T W + + F + + V D T D + L+AS D RL
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 59 WNIETGEVDKEYSGHQKAITSL 80
W++ TGE + + GH+ + S+
Sbjct: 92 WDVATGETYQRFVGHKSDVMSV 113
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELG----TANQRWVWDAAFTLDSKFLLTASSDGVARL 58
++ + S D+T ++W + L LG + R V + DS +++A +D + +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 59 WNIETGEVDKEYSGHQKAITSL 80
WN+ +++ ++ GH I +L
Sbjct: 181 WNLNQFQIEADFIGHNSNINTL 202
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 3 LLATTSADQTARIW----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
LL + S D+T W + + F + + V D T D + L+AS D RL
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 59 WNIETGEVDKEYSGHQKAITSL 80
W++ TGE + + GH+ + S+
Sbjct: 92 WDVATGETYQRFVGHKSDVMSV 113
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELG----TANQRWVWDAAFTLDSKFLLTASSDGVARL 58
++ + S D+T ++W + L LG + R V + DS +++A +D + +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 59 WNIETGEVDKEYSGHQKAITSL 80
WN+ +++ ++ GH I +L
Sbjct: 181 WNLNQFQIEADFIGHNSNINTL 202
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 3 LLATTSADQTARIW----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
LL + S D+T W + + F + + V D T D + L+AS D RL
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 59 WNIETGEVDKEYSGHQKAITSL 80
W++ TGE + + GH+ + S+
Sbjct: 92 WDVATGETYQRFVGHKSDVMSV 113
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELG----TANQRWVWDAAFTLDSKFLLTASSDGVARL 58
++ + S D+T ++W + L LG + R V + DS +++A +D + +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 59 WNIETGEVDKEYSGHQKAITSL 80
WN+ +++ ++ GH I +L
Sbjct: 181 WNLNQFQIEADFIGHNSNINTL 202
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 3 LLATTSADQTARIW----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
LL + S D+T W + + F + + V D T D + L+AS D RL
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 59 WNIETGEVDKEYSGHQKAITSL 80
W++ TGE + + GH+ + S+
Sbjct: 92 WDVATGETYQRFVGHKSDVXSV 113
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 4 LATTSADQTARIWNTEDFSLVRELG----TANQRWVWDAAFTLDSKFLLTASSDGVARLW 59
+ + S D+T ++W + L LG + R V + DS +++A +D + W
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Query: 60 NIETGEVDKEYSGHQKAITSL 80
N+ +++ ++ GH I +L
Sbjct: 182 NLNQFQIEADFIGHNSNINTL 202
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
+ + A++S D R+W+ E+ ++ + A W AF+ DS++L T + G ++
Sbjct: 92 LPIAASSSLDAHIRLWDLENGKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150
Query: 61 IETGEVDKEYS--GHQKAITSLAF 82
+E+G+ KEYS K I S+A+
Sbjct: 151 VESGK--KEYSLDTRGKFILSIAY 172
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC 83
F+ DS+ L+TAS DG ++++++ + SGH + ++AFC
Sbjct: 214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 33 RWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
+++ A++ D K+L + + DG+ +++I TG++ GH I SL F
Sbjct: 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF 214
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL T S D +I++ + +L L + + WV + AF D +++SSD ++W++
Sbjct: 220 LLVTASDDGYIKIYDVQHANLAGTL-SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278
Query: 63 TGEVDKEYSGHQKAI 77
T + HQ +
Sbjct: 279 TRTCVHTFFDHQDQV 293
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 6 TTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE 65
T SAD+T ++W + +++ + V A D F+ + S+DG+ +L + TG+
Sbjct: 160 TASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGD 216
Query: 66 VDKEYSGHQKAITSLAFC 83
V + Y GH+ S +C
Sbjct: 217 VLRTYEGHE----SFVYC 230
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 2 GLLATTSADQTARIWNTEDFSLVRELG-TANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
G + + D+T RIW+ E+ SL + + A W D D ++ SSD + R+++
Sbjct: 237 GDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGD---IIVGSSDNLVRIFS 293
Query: 61 IE 62
E
Sbjct: 294 QE 295
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+ T+S D T +W+ E V + D++ ++ + D A+LW++
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 64 GEVDKEYSGHQKAITSLAF 82
G + ++GH+ I ++ F
Sbjct: 216 GMCRQTFTGHESDINAICF 234
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+ T+S D T +W+ E V + D++ ++ + D A+LW++
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 64 GEVDKEYSGHQKAITSLAF 82
G + ++GH+ I ++ F
Sbjct: 216 GMCRQTFTGHESDINAICF 234
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+ T+S D T +W+ E V + D++ ++ + D A+LW++
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 64 GEVDKEYSGHQKAITSLAF 82
G + ++GH+ I ++ F
Sbjct: 216 GMCRQTFTGHESDINAICF 234
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+ T+S D T +W+ E V + D++ ++ + D A+LW++
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 64 GEVDKEYSGHQKAITSLAF 82
G + ++GH+ I ++ F
Sbjct: 216 GMCRQTFTGHESDINAICF 234
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+ T+S D T +W+ E V + D++ ++ + D A+LW++
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 64 GEVDKEYSGHQKAITSLAF 82
G + ++GH+ I ++ F
Sbjct: 227 GMCRQTFTGHESDINAICF 245
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 3 LLATTSADQTARIWNTEDFSLVRE--LGTANQRWVWDAAFTLDSKFLLTASSDGVARLW- 59
LLA+ D+ RIW TE S + + L +QR V A++ +L +AS D +W
Sbjct: 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK 89
Query: 60 -NIETGEVDKEYSGHQKAITSLAF 82
N + E GH+ + S+A+
Sbjct: 90 KNQDDFECVTTLEGHENEVKSVAW 113
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 3 LLATTSADQTARIWNT---EDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLW 59
LLAT S D++ +W +++ V L + Q V + + L +AS D +L+
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD-VKHVVWHPSQELLASASYDDTVKLY 177
Query: 60 NIETGE--VDKEYSGHQKAITSLAF 82
E + GH+ + SLAF
Sbjct: 178 REEEDDWVCCATLEGHESTVWSLAF 202
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 3 LLATTSADQTARIWNTE--DFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLW 59
LLA+ S D T +++ E D+ L ++ VW AF + L + S D R+W
Sbjct: 164 LLASASYDDTVKLYREEEDDWVCCATL-EGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
L ++S D +IW+ +D S R L ++ V D A + +L+AS DG RLW T
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 212
Query: 64 G 64
G
Sbjct: 213 G 213
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
+L TT D ++ ++ +F+L RE+ A+ + F + L+++S D ++W+++
Sbjct: 113 ILGTTEGD--IKVLDS-NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169
Query: 63 TGEVDKEYSGHQKAITSLAFCD 84
G + GH+ +T +A D
Sbjct: 170 DGSNPRTLIGHRATVTDIAIID 191
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
L ++S D +IW+ +D S R L ++ V D A + +L+AS DG RLW T
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 209
Query: 64 G 64
G
Sbjct: 210 G 210
Score = 34.3 bits (77), Expect = 0.017, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
+L TT D ++ ++ +F+L RE+ A+ + F + L+++S D ++W+++
Sbjct: 110 ILGTTEGD--IKVLDS-NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 166
Query: 63 TGEVDKEYSGHQKAITSLAFCD 84
G + GH+ +T +A D
Sbjct: 167 DGSNPRTLIGHRATVTDIAIID 188
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 15/78 (19%)
Query: 3 LLATTSADQTARIW---------------NTEDFSLVRELGTANQRWVWDAAFTLDSKFL 47
+LAT SAD ++W N + V TA+ V FT D L
Sbjct: 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260
Query: 48 LTASSDGVARLWNIETGE 65
LT +D RLWN GE
Sbjct: 261 LTVGTDNRMRLWNSSNGE 278
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 38 AAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL 80
+FT +LTAS DG LW++E+G++ + + GH + L
Sbjct: 160 CSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCL 202
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 34.7 bits (78), Expect = 0.016, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
++ + S D T +W+ + L R ++ + + K ++AS D R+W++E
Sbjct: 282 IVVSGSYDNTLIVWDVAQXKCLYILSGHTDR-IYSTIYDHERKRCISASXDTTIRIWDLE 340
Query: 63 TGEVDKEYSGHQKAITSLAFCD 84
GE+ GH + L D
Sbjct: 341 NGELXYTLQGHTALVGLLRLSD 362
Score = 32.3 bits (72), Expect = 0.074, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 6 TTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE 65
+ S D T RIW+ E+ L T L KFL++A++DG R W + +
Sbjct: 327 SASXDTTIRIWDLENGELXY---TLQGHTALVGLLRLSDKFLVSAAADGSIRGW--DAND 381
Query: 66 VDKEYSGHQKAITSL 80
+++S H ++++
Sbjct: 382 YSRKFSYHHTNLSAI 396
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 6 TTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE 65
T + D+ R++++ + + +L + + VW + L++ S+D R+W+I+ G
Sbjct: 137 TGADDKXIRVYDSINKKFLLQL-SGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGC 194
Query: 66 VDKEYSGHQKAITSLAFCDF 85
+ GH + L ++
Sbjct: 195 CTHVFEGHNSTVRCLDIVEY 214
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
++ + S D T +W+ + L R ++ + + K ++AS D R+W++E
Sbjct: 282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDR-IYSTIYDHERKRCISASMDTTIRIWDLE 340
Query: 63 TGEVDKEYSGHQKAITSLAFCD 84
GE+ GH + L D
Sbjct: 341 NGELMYTLQGHTALVGLLRLSD 362
Score = 33.1 bits (74), Expect = 0.046, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 6 TTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE 65
+ S D T RIW+ E+ L+ T L KFL++A++DG R W + +
Sbjct: 327 SASMDTTIRIWDLENGELMY---TLQGHTALVGLLRLSDKFLVSAAADGSIRGW--DAND 381
Query: 66 VDKEYSGHQKAITSL 80
+++S H ++++
Sbjct: 382 YSRKFSYHHTNLSAI 396
Score = 28.5 bits (62), Expect = 0.92, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 6 TTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE 65
T + D+ R++++ + + +L + + VW + L++ S+D R+W+I+ G
Sbjct: 137 TGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGC 194
Query: 66 VDKEYSGHQKAITSLAFCDF 85
+ GH + L ++
Sbjct: 195 CTHVFEGHNSTVRCLDIVEY 214
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.7 bits (73), Expect = 0.049, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 16/86 (18%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWD---------AAFTLDSKFLLTASSDG 54
AT AD T R+W+ V Q+W D + +++ S DG
Sbjct: 267 FATVGADATIRVWDVTTSKCV-------QKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 319
Query: 55 VARLWNIETGEVDKEYSGHQKAITSL 80
+ + EV K SGH K IT+L
Sbjct: 320 TLNFYELGHDEVLKTISGHNKGITAL 345
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.7 bits (73), Expect = 0.049, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 16/86 (18%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWD---------AAFTLDSKFLLTASSDG 54
AT AD T R+W+ V Q+W D + +++ S DG
Sbjct: 267 FATVGADATIRVWDVTTSKCV-------QKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 319
Query: 55 VARLWNIETGEVDKEYSGHQKAITSL 80
+ + EV K SGH K IT+L
Sbjct: 320 TLNFYELGHDEVLKTISGHNKGITAL 345
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.0 bits (71), Expect = 0.084, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
F +K LL+AS DG R+W+ G + GH ++I S ++
Sbjct: 255 FNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW 297
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 3 LLATTSADQTARIW-----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVAR 57
LL + S D T RIW N+++ + WV D +++ S DG R
Sbjct: 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK-------VISCSMDGSVR 313
Query: 58 LWNIE 62
LW+++
Sbjct: 314 LWSLK 318
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSG-HQKAITSLAFCD 84
F+ KFL TA SDG+ WN++T + K ++ ++ ++ +A D
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSG-HQKAITSLAFCD 84
F+ KFL TA SDG+ WN++T + K ++ ++ ++ +A D
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSG-HQKAITSLAFCD 84
F+ KFL TA SDG+ WN++T + K ++ ++ ++ +A D
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSG-HQKAITSLAFCD 84
F+ KFL TA SDG+ WN++T + K ++ ++ ++ +A D
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+ T S D T +IW+ + S V L + V A F +++ S DG ++WN T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Query: 64 GEVDK 68
+V+K
Sbjct: 260 YKVEK 264
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWV--WDAAFTLDSKFLLTASSDGVARLWNI 61
A+ D+T ++W+ + L T +R V D D +++TAS D ++W+
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215
Query: 62 ETGEVDKEYSGHQKAITSLAF 82
+T GH ++ F
Sbjct: 216 QTKSCVATLEGHMSNVSFAVF 236
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 30.0 bits (66), Expect = 0.30, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+ T S D T +IW+ + S V L + V A F +++ S DG ++WN T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Query: 64 GEVDK 68
+V+K
Sbjct: 260 YKVEK 264
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWV--WDAAFTLDSKFLLTASSDGVARLWNI 61
A+ D+T ++W+ + L T +R V D D +++TAS D ++W+
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215
Query: 62 ETGEVDKEYSGHQKAITSLAF 82
+T GH ++ F
Sbjct: 216 QTKSCVATLEGHMSNVSFAVF 236
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 30.0 bits (66), Expect = 0.30, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+ T S D T +IW+ + S V L + V A F +++ S DG ++WN T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Query: 64 GEVDK 68
+V+K
Sbjct: 260 YKVEK 264
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWV--WDAAFTLDSKFLLTASSDGVARLWNI 61
A+ D+T ++W+ + L T +R V D D +++TAS D ++W+
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215
Query: 62 ETGEVDKEYSGHQKAITSLAF 82
+T GH ++ F
Sbjct: 216 QTKSCVATLEGHMSNVSFAVF 236
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+ T S D T +IW+ + S V L + V A F +++ S DG ++WN T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Query: 64 GEVDK 68
+V+K
Sbjct: 260 YKVEK 264
Score = 28.9 bits (63), Expect = 0.73, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWV--WDAAFTLDSKFLLTASSDGVARLWNI 61
A+ D+T ++W+ + L T +R V D D +++TAS D ++W+
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215
Query: 62 ETGEVDKEYSGHQKAITSLAF 82
+T GH ++ F
Sbjct: 216 QTKSCVATLEGHMSNVSFAVF 236
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 3 LLATTSADQTARIWNTEDFSLVRE-LGTANQRW--VWDAAFTLDSKFLLTASSDGVARLW 59
LL + S D +A +W +SL E LGT + +W +K+ +T S+D +LW
Sbjct: 46 LLFSCSKDSSASVW----YSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101
Query: 60 NIETGE 65
++ G+
Sbjct: 102 DVSNGQ 107
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 29.3 bits (64), Expect = 0.64, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 36 WDAAFTLDSK----FLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
+ A+T DS L A S G+ R+ N T + K Y GH AI L F
Sbjct: 109 YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 159
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 43 DSKFLLTASSDGVARLWNIET 63
D LL+ S D RLWNI+T
Sbjct: 163 DPNLLLSVSKDHALRLWNIQT 183
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 29.3 bits (64), Expect = 0.64, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 36 WDAAFTLDSK----FLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
+ A+T DS L A S G+ R+ N T + K Y GH AI L F
Sbjct: 73 YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 123
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 43 DSKFLLTASSDGVARLWNIET 63
D LL+ S D RLWNI+T
Sbjct: 127 DPNLLLSVSKDHALRLWNIQT 147
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 36 WDAAFTLDSK----FLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
+ A+T DS L A S G+ R+ N T + K Y GH AI L F
Sbjct: 72 YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 122
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 43 DSKFLLTASSDGVARLWNIET 63
D LL+ S D RLWNI+T
Sbjct: 126 DPNLLLSVSKDHALRLWNIQT 146
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 36 WDAAFTLDSK----FLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
+ A+T DS L A S G+ R+ N T + K Y GH AI L F
Sbjct: 72 YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 122
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 43 DSKFLLTASSDGVARLWNIET 63
D LL+ S D RLWNI+T
Sbjct: 126 DPNLLLSVSKDHALRLWNIQT 146
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 28.9 bits (63), Expect = 0.67, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 36 WDAAFTLDSK----FLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
+ A+T DS L A S G+ R+ N T + K Y GH AI L F
Sbjct: 68 YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 118
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 43 DSKFLLTASSDGVARLWNIET 63
D LL+ S D RLWNI+T
Sbjct: 122 DPNLLLSVSKDHALRLWNIQT 142
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
+ + S D T R+W+ S ++ + F D + T S DG RL+++
Sbjct: 220 MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279
Query: 63 TGEVDKEYSGHQ-------KAITSLAF 82
TG + Y+ +TS+AF
Sbjct: 280 TGHQLQVYNREPDRNDNELPIVTSVAF 306
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 43 DSKFLLTASSDGVARLWNIETGEVDKEYS 71
++ +L+T S GV ++WN++ V + YS
Sbjct: 75 ETPYLITGSDQGVIKIWNLKEIIVGEVYS 103
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 39 AFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGH 73
A + DSK + SDG +W++ + +++ GH
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182
>pdb|2OEV|A Chain A, Crystal Structure Of AlixAIP1
Length = 705
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSG 72
F + SKFL + DGV + E+D+ Y G
Sbjct: 585 FDMTSKFLTALAQDGVINEEALSVTELDRVYGG 617
>pdb|2XS1|A Chain A, Crystal Structure Of Alix In Complex With The Sivmac239
Pykevtedl Late Domain
pdb|2XS8|A Chain A, Crystal Structure Of Alix In Complex With The Sivagmtan-1
Aydparkll Late Domain
Length = 704
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSG 72
F + SKFL + DGV + E+D+ Y G
Sbjct: 584 FDMTSKFLTALAQDGVINEEALSVTELDRVYGG 616
>pdb|2R02|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE HIV-1
Ypltsl Late Domain
pdb|2R03|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE YPDL
Late Domain
pdb|2R05|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE HIV-1
Yplasl Late Domain
Length = 697
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 40 FTLDSKFLLTASSDGVARLWNIETGEVDKEYSG 72
F + SKFL + DGV + E+D+ Y G
Sbjct: 577 FDMTSKFLTALAQDGVINEEALSVTELDRVYGG 609
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 30 ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE 65
A+ WV +F + L +A DG R W+++T E
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 334
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 30 ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE 65
A+ WV +F + L +A DG R W+++T E
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 324
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 3 LLATTSADQTARIWN--TEDFSLVRELGTANQRWVWDAAFTLDSKF--LLTASSDGVARL 58
LLA++S D T RIW +D+ V L ++ VW + F L + S D R+
Sbjct: 167 LLASSSYDDTVRIWKDYDDDWECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225
Query: 59 WN 60
W
Sbjct: 226 WK 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.129 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,359,868
Number of Sequences: 62578
Number of extensions: 73298
Number of successful extensions: 580
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 311
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)