RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7058
(85 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 74.3 bits (183), Expect = 1e-17
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
LLAT S D T ++W+ E L+R L + V D A + D +L + SSD RLW++
Sbjct: 22 KLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
Query: 62 ETGEVDKEYSGHQKAITSLAF 82
ETGE + +GH ++S+AF
Sbjct: 81 ETGECVRTLTGHTSYVSSVAF 101
Score = 72.8 bits (179), Expect = 4e-17
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
+L+++S D+T ++W+ E + L + WV AF+ D F+ ++S DG +LW++
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG+ +GH + S+AF
Sbjct: 166 TGKCVATLTGHTGEVNSVAF 185
Score = 70.8 bits (174), Expect = 2e-16
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
+A++S D T ++W+ V L T + V AF+ D + LL++SSDG +LW++
Sbjct: 149 FVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207
Query: 63 TGEVDKEYSGHQKAITSLAFC 83
TG+ GH+ + S+AF
Sbjct: 208 TGKCLGTLRGHENGVNSVAFS 228
Score = 68.5 bits (168), Expect = 1e-15
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
L ++S+D T ++W+ + L ++ V AF+ D L + S DG R+W++ T
Sbjct: 192 LLSSSSDGTIKLWDLSTGKCLGTL-RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250
Query: 64 GEVDKEYSGHQKAITSLAF 82
GE + SGH ++TSLA+
Sbjct: 251 GECVQTLSGHTNSVTSLAW 269
Score = 67.0 bits (164), Expect = 5e-15
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LA+ S+D+T R+W+ E VR L +V AF+ D + L ++S D ++W++E
Sbjct: 65 YLASGSSDKTIRLWDLETGECVRTLTGHTS-YVSSVAFSPDGRILSSSSRDKTIKVWDVE 123
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG+ GH + S+AF
Sbjct: 124 TGKCLTTLRGHTDWVNSVAF 143
Score = 53.5 bits (129), Expect = 5e-10
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 34 WVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF 85
V AF+ D K L T S DG ++W++ETGE+ + GH + +A
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD 62
Score = 47.3 bits (113), Expect = 6e-08
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
LLA+ S D T R+W+ V+ L + + V A++ D K L + S+DG R+W+
Sbjct: 233 LLASGSEDGTIRVWDLRTGECVQTL-SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 56.3 bits (134), Expect = 5e-11
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LLA+ S+D T R+W+ S + + + V AF+ D K L + SSDG RLW++E
Sbjct: 255 LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314
Query: 63 TGEVDKEYS--GHQKAITSLAFCD 84
TG++ + GH+ ++SL+F
Sbjct: 315 TGKLLSSLTLKGHEGPVSSLSFSP 338
Score = 50.9 bits (120), Expect = 4e-09
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS-DGVARLWNI 61
LLA++S D T ++W+ + + V AF+ D K L + SS DG +LW++
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185
Query: 62 ETGEVDKEYSGHQKAITSLAFC 83
TG+ +GH ++SLAF
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFS 207
Score = 50.5 bits (119), Expect = 7e-09
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+A+ S+D T R+W+ L+R + + V ++F+ D L + SSDG RLW++
Sbjct: 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV-SSFSPDGSLLASGSSDGTIRLWDLR 271
Query: 63 TG-EVDKEYSGHQKAITSLAF 82
+ + + SGH ++ S+AF
Sbjct: 272 SSSSLLRTLSGHSSSVLSVAF 292
Score = 47.4 bits (111), Expect = 7e-08
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L++ S D T R+W+ ++ L + V +F+ D + + + S+DG RLW++
Sbjct: 343 LVSGGSDDGTIRLWDLRTGKPLKTLEGHSN--VLSVSFSPDGRVVSSGSTDGTVRLWDLS 400
Query: 63 TGEVDKEYSGHQKAITSLAF 82
TG + + GH +TSL F
Sbjct: 401 TGSLLRNLDGHTSRVTSLDF 420
Score = 42.8 bits (99), Expect = 3e-06
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 3 LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAF-TLDSKFLLTASS--DGVARL 58
LL + S+D T ++W+ L++ L + V A + D +L ASS DG +L
Sbjct: 79 LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138
Query: 59 WNIET-GEVDKEYSGHQKAITSLAF 82
W++ T G++ + GH +++TSLAF
Sbjct: 139 WDLSTPGKLIRTLEGHSESVTSLAF 163
Score = 42.8 bits (99), Expect = 4e-06
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 2 GLLATTSADQTARIWNTEDFSLVRELG-TANQRWVWDAAFTLDSKFLLTA-SSDGVARLW 59
LLA+ S+D T R+W+ E L+ L ++ V +F+ D L++ S DG RLW
Sbjct: 297 KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356
Query: 60 NIETGEVDKEYSGHQKAITSLAFCD 84
++ TG+ K GH + S++F
Sbjct: 357 DLRTGKPLKTLEGH-SNVLSVSFSP 380
Score = 40.1 bits (92), Expect = 3e-05
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF-LLTASSDGVARLWNI 61
L + +S D T ++W+ + L V AF+ D + + SSDG RLW++
Sbjct: 170 LASGSSLDGTIKLWDLRTGKPLSTLAGHT-DPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228
Query: 62 ETGEVDK-EYSGHQKAITSL 80
TG++ + SGH ++ S
Sbjct: 229 STGKLLRSTLSGHSDSVVSS 248
Score = 39.7 bits (91), Expect = 4e-05
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
++++ S D T R+W+ SL+R L V F+ D K L + SSD RLW+++
Sbjct: 384 VVSSGSTDGTVRLWDLSTGSLLRNLDGHT-SRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442
Query: 63 T 63
T
Sbjct: 443 T 443
Score = 31.2 bits (69), Expect = 0.036
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 16 WNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE--VDKEYSGH 73
L L ++ + AF+ D + LL+ SSDG +LW+++ GE + H
Sbjct: 49 SLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH 108
Query: 74 QKAITSLAFCD 84
+++ LA
Sbjct: 109 DSSVSKLALSS 119
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats
(blades) of the beta propeller domain.
Length = 40
Score = 34.6 bits (80), Expect = 3e-04
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 20 DFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
L++ L + V AF+ D K+L + S DG +LW+
Sbjct: 1 SGELLKTL-KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 25.0 bits (55), Expect = 1.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 63 TGEVDKEYSGHQKAITSLAFCD 84
+GE+ K GH +TS+AF
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSP 22
Score = 23.4 bits (51), Expect = 5.7
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 3 LLATTSADQTARIWN 17
LA+ S D T ++W+
Sbjct: 26 YLASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 34.6 bits (80), Expect = 3e-04
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 29 TANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
+ V AF+ D L + S DG R+W+
Sbjct: 8 KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 24.2 bits (53), Expect = 3.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 3 LLATTSADQTARIWN 17
LLA+ S D T R+W+
Sbjct: 25 LLASGSDDGTVRVWD 39
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 31.6 bits (71), Expect = 0.028
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFT-LDSKFLLTASSDGVARLWNIE 62
+A+++ + ++W+ LV E+ +R VW ++ D L + S DG +LW+I
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKR-VWSIDYSSADPTLLASGSDDGSVKLWSIN 606
Query: 63 TG 64
G
Sbjct: 607 QG 608
>gnl|CDD|221182 pfam11715, Nup160, Nucleoporin Nup120/160. Nup120 is conserved
from fungi to plants to humans, and is homologous with
the Nup160 of vertebrates. The nuclear core complex, or
NPC, mediates macromolecular transport across the
nuclear envelope. Deletion of the NUP120 gene causes
clustering of NPCs at one side of the nuclear envelope,
moderate nucleolar fragmentation and slower cell growth.
The vertebrate NPC is estimated to contain between 30
and 60 different proteins. most of which are not known.
Two important ones in creating the nucleoporin basket
are Nup98 and Nup153, and Nup120, in conjunction with
Nup 133, interacts with these two and itself plays a
role in mRNA export. Nup160, Nup133, Nup96, and Nup107
are all targets of phosphorylation. The phosphorylation
sites are clustered mainly at the N-terminal regions of
these proteins, which are predicted to be natively
disordered. The entire Nup107-160 subcomplex is stable
throughout the cell cycle, thus it seems unlikely that
phosphorylation affects interactions within the
Nup107-160 subcomplex, but rather that it regulates the
association of the subcomplex with the NPC and other
proteins.
Length = 511
Score = 27.9 bits (62), Expect = 0.53
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 37 DAAFTLDSKFLLTASSDGVARLWNIETG 64
++ FL T S DG R+WN++TG
Sbjct: 225 SSSEVNGQTFLFTLSLDGTLRVWNLDTG 252
>gnl|CDD|234377 TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated
beta-propeller protein. Members of this protein family
consist of seven repeats each of the YVTN family
beta-propeller repeat (see TIGR02276). Members occur
invariably as part of a transport operon that is
associated with PQQ-dependent catabolism of alcohols
such as phenylethanol.
Length = 300
Score = 27.7 bits (62), Expect = 0.60
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 13 ARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTA 50
A+ + D+ LV QR VW AFT D K LLT
Sbjct: 236 AKTYEVLDYLLV------GQR-VWQLAFTPDEKRLLTT 266
>gnl|CDD|241177 cd12733, RRM3_GRSF1, RNA recognition motif 3 in G-rich sequence
factor 1 (GRSF-1) and similar proteins. This subgroup
corresponds to the RRM3 of G-rich sequence factor 1
(GRSF-1), a cytoplasmic poly(A)+ mRNA binding protein
which interacts with RNA in a G-rich element-dependent
manner. It may function in RNA packaging, stabilization
of RNA secondary structure, or other macromolecular
interactions. GRSF-1 contains three potential RNA
recognition motifs (RRMs), also termed RBDs (RNA
binding domains) or RNPs (ribonucleoprotein domains),
which are responsible for the RNA binding. In addition,
GRSF-1 has two auxiliary domains, an acidic
alpha-helical domain and an N-terminal alanine-rich
region, that may play a role in protein-protein
interactions and provide binding specificity. .
Length = 75
Score = 26.7 bits (59), Expect = 0.65
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 44 SKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA 81
++ L+ SSDG A TGE D + H A+ ++A
Sbjct: 27 TRILIEYSSDGRA------TGEADVHFESHDDAVAAMA 58
>gnl|CDD|185748 cd09235, V_Alix, Middle V-domain of mammalian Alix and related
domains are dimerization and protein interaction
modules. This family contains the middle V-shaped (V)
domain of mammalian Alix (apoptosis-linked gene-2
interacting protein X) and related domains. It belongs
to the V_Alix_like superfamily which includes the
V-domains of Bro1 and Rim20 (also known as PalA) from
Saccharomyces cerevisiae, mammalian His-Domain type N23
protein tyrosine phosphatase (HD-PTP, also known as
PTPN23), and related domains. Alix, also known as
apoptosis-linked gene-2 interacting protein 1 (AIP1), is
part of the ESCRT (Endosomal Sorting Complexes Required
for Transport) system, and participates in membrane
remodeling processes, including the budding of enveloped
viruses, vesicle budding inside late endosomal
multivesicular bodies (MVBs), the abscission reactions
of mammalian cell division, and in apoptosis. The Alix
V-domain is a dimerization domain, and contains a
binding site, partially conserved in the V_Alix_like
superfamily, for the retroviral late assembly (L) domain
YPXnL motif. In addition to the V-domain, Alix also has
an N-terminal Bro1-like domain, which binds components
of the ESCRT-III complex, in particular CHMP4. The
Bro1-like domain of Alix can also bind to human
immunodeficiency virus type 1 (HIV-1) nucleocapsid. Alix
also has a C-terminal proline-rich region (PRR) that
binds multiple partners including Tsg101 (tumor
susceptibility gene 101, a component of ESCRT-1), and
the apoptotic protein ALG-2.
Length = 339
Score = 25.7 bits (57), Expect = 3.0
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 38 AAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQK 75
A F + SKFL + DG I E+D+ Y QK
Sbjct: 217 ATFDMKSKFLSALAQDGAINEEAISVEELDRVYGPLQK 254
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 25.6 bits (56), Expect = 3.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 47 LLTASSDGVARLWNIETGEVDKEYSGHQKAITSL 80
L +A +D V +W++E G+ + H ITSL
Sbjct: 141 LASAGADMVVNVWDVERGKAVEVIKCHSDQITSL 174
Score = 25.2 bits (55), Expect = 4.8
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 35 VWDAAFT-LDSKFLLTASSDGVARLWNIETGEVDK-------EYSGHQKAITSLAF 82
+ D AF D + L TAS DG W I + + GH K + ++F
Sbjct: 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSF 133
>gnl|CDD|185003 PRK15043, PRK15043, transcriptional regulator MirA; Provisional.
Length = 243
Score = 25.3 bits (55), Expect = 3.8
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLW 59
GLL D R++N D +RE+ +RW+ + K LL+ + V W
Sbjct: 28 GLLKPQRTDGGHRLFNDADIDRIREI----KRWIDNGVQVSKVKMLLSNENVDVQNGW 81
>gnl|CDD|234551 TIGR04336, AmmeMemoSam_B, AmmeMemoRadiSam system protein B.
Members of this protein family belong to the same domain
family as the mammalian protein Memo (Mediator of
ErbB2-driven cell MOtility). Members of the present
family occur as part of a three gene system with an
uncharacterized radical SAM enzyme and a homolog of the
mammalian protein AMMECR1, a mammalian protein named for
AMME - Alport syndrome, Mental Retardation, Midface
hypoplasia, and Elliptocytosis. Memo in humans has
protein-protein interaction activity with binding of
phosphorylated Try, but members of this family may be
active as enzymes, as suggested by homology to a class
of nonheme iron dioxygenases.
Length = 269
Score = 24.8 bits (55), Expect = 5.3
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 20 DFSLVRELGTANQRWVWDAAFTLDSKFLLTASSD 53
+ LG A + +A L L+ ASSD
Sbjct: 153 SPEVAAALGEA----LAEAIKELGRDVLIVASSD 182
>gnl|CDD|133470 cd01415, SAICAR_synt_PurC, bacterial and archaeal
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase. A subfamily of SAICAR
synthetases represented by the Thermotoga maritima (Tm)
enzyme and E. coli PurC. SAICAR synthetase catalyzes the
seventh step of the de novo biosynthesis of purine
nucleotides (also reported as eighth step). It converts
5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP,
and L-aspartate into
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR), ADP, and phosphate.
Length = 230
Score = 24.7 bits (55), Expect = 6.5
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 57 RLWNIETGEV-DKEY 70
RLW+ ETGE DK+
Sbjct: 195 RLWDKETGEKLDKDR 209
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.129 0.400
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,044,324
Number of extensions: 302234
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 39
Length of query: 85
Length of database: 10,937,602
Length adjustment: 53
Effective length of query: 32
Effective length of database: 8,586,840
Effective search space: 274778880
Effective search space used: 274778880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)