RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7058
(85 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 63.2 bits (152), Expect = 4e-14
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L + S D+T ++W+ + L + WV F KF+L+ + D R+W+ +
Sbjct: 219 FLLSGSRDKTIKMWDVSTGMCLMTL-VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277
Query: 63 TGEVDKEYSGHQKAITSLAFC 83
K + H+ +TSL F
Sbjct: 278 NKRCMKTLNAHEHFVTSLDFH 298
Score = 50.9 bits (120), Expect = 1e-09
Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLW 59
+ + + D+T R+W+ ++ ++ L A++ +V F + +++T S D ++W
Sbjct: 261 FILSCADDKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
Score = 50.1 bits (118), Expect = 2e-09
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 32 QRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF 85
+ V F +++AS D ++W+ ETG+ ++ GH ++ ++F
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Score = 42.4 bits (98), Expect = 1e-06
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 19/100 (19%)
Query: 3 LLATTSADQTARIWNTEDFSLVREL-------------------GTANQRWVWDAAFTLD 43
L+A+ S DQT R+W EL +
Sbjct: 157 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 216
Query: 44 SKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC 83
FLL+ S D ++W++ TG GH + + F
Sbjct: 217 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256
Score = 40.9 bits (94), Expect = 3e-06
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+ + S D+T ++W + V+ T ++ WV D + + S+D R+W + T
Sbjct: 116 IVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 174
Query: 64 GEVDKEYSGHQKAITSLAFC 83
E E H+ + +++
Sbjct: 175 KECKAELREHRHVVECISWA 194
Score = 29.7 bits (65), Expect = 0.025
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWD 37
++ + S D T ++W+ E R L + V D
Sbjct: 31 VMVSASEDATIKVWDYETGDFERTL-KGHTDSVQD 64
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 56.7 bits (135), Expect = 9e-12
Identities = 18/93 (19%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTAN-----------QRWVWDAAFTLDSKFLLTAS 51
+ + S D++ ++WN ++ + + T N + +V A T + +++L+ S
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327
Query: 52 SDGVARLWNIETGEVDKEYSGHQKAITSLAFCD 84
D W+ ++G GH+ ++ S+A +
Sbjct: 328 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360
Score = 47.5 bits (111), Expect = 1e-08
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAA------FTLDSKFLLTASSDGVA 56
+ + S D+ W+ + + + L ++ V A + T S D A
Sbjct: 322 YILSGSKDRGVLFWDKKSGNPLLML-QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 380
Query: 57 RLWNIE 62
R+W +
Sbjct: 381 RIWKYK 386
Score = 38.6 bits (88), Expect = 2e-05
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 4 LATTSADQTARIWNTEDFSLVREL------GTANQRWVWDAAFTLDSKFLLTASSDGVAR 57
+A S D+ R+W++E LV L GT ++ V+ FT D + +++ S D +
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279
Query: 58 LWNIETGEVDKEYSGHQ 74
LWN++ +
Sbjct: 280 LWNLQNANNKSDSKTPN 296
Score = 34.0 bits (76), Expect = 0.001
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 4 LATTSADQTARIWNTE-----DFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
+ ++N D L + L + V F+ D ++L T + ++
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLD--HTSVVCCVKFSNDGEYLATGC-NKTTQV 87
Query: 59 WNIETGEVDKEYSGHQKAITS 79
+ + G + S A
Sbjct: 88 YRVSDGSLVARLSDDSAANKD 108
Score = 30.5 bits (67), Expect = 0.013
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 34 WVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEY-------SGHQKAITSLAFC 83
A D K++ S D R+W+ ETG + + +GH+ ++ S+ F
Sbjct: 207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 263
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 56.4 bits (134), Expect = 1e-11
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
+T D W T + + + ++ V ++D K+++T S D A ++ +
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQSKESS--SVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 44.8 bits (104), Expect = 1e-07
Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
++ V F K+ ++ D + W G + ++ S
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDI 314
Score = 40.9 bits (94), Expect = 3e-06
Identities = 9/80 (11%), Positives = 19/80 (23%), Gaps = 8/80 (10%)
Query: 8 SADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD 67
D + L + V + ++ + T G ++W+I
Sbjct: 29 PPDALIGPGIPRHARQINTLN--HGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNK 85
Query: 68 K-----EYSGHQKAITSLAF 82
+ I S
Sbjct: 86 SPVSQLDCLNRDNYIRSCKL 105
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 55.7 bits (132), Expect = 2e-11
Identities = 13/60 (21%), Positives = 26/60 (43%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
+A+ SAD+T +IWN + + + + + L++ S++G N E
Sbjct: 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
Score = 39.1 bits (89), Expect = 1e-05
Identities = 10/55 (18%), Positives = 24/55 (43%)
Query: 31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF 85
+ V+ ++ D + +AS+D ++WN+ T +V+K + +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291
Score = 38.7 bits (88), Expect = 2e-05
Identities = 5/45 (11%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 39 AFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC 83
T + + V + + + Y+ H T
Sbjct: 24 GNTPAGDKIQYCNGTSV-YTVPVGSLTDTEIYTEHSHQTTVAKTS 67
Score = 33.0 bits (73), Expect = 0.002
Identities = 5/58 (8%), Positives = 13/58 (22%), Gaps = 1/58 (1%)
Query: 7 TSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG 64
+ + T + A + + + G R+W+
Sbjct: 34 YCNGTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 90
Score = 23.7 bits (49), Expect = 3.7
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 2 GLLATTSADQTARIWNTE 19
L + SA+ N E
Sbjct: 294 QALVSISANGFINFVNPE 311
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 55.1 bits (131), Expect = 3e-11
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Query: 3 LLATTSADQTARI-WNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
AT S D T R+ D L+ + +F+ + LL D +W+
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 62 ETGEVDKEYSGHQKAITSLAFCD 84
+ +GH ++ L D
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTD 322
Score = 53.2 bits (126), Expect = 1e-10
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
LL D +W+ L + V T D + T S D ++WN
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVL-AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.6 bits (88), Expect = 3e-05
Identities = 10/52 (19%), Positives = 21/52 (40%)
Query: 32 QRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC 83
++ + DS+ L++AS DG +W+ T + + A+
Sbjct: 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
Score = 35.5 bits (80), Expect = 2e-04
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 34 WVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC 83
V + D++ ++ + D A+LW++ G + ++GH+ I ++ F
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235
Score = 24.7 bits (52), Expect = 1.9
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
LL + S D IW++ + V + WV A+ ++ D + ++N++
Sbjct: 69 LLVSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127
Query: 63 T 63
T
Sbjct: 128 T 128
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 51.7 bits (122), Expect = 5e-10
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 16 WNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQK 75
W + + L + V +++ S D ++W+ TG+ + GH
Sbjct: 1 WRRGELKSPKVL-KGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58
Query: 76 AITSLAFCD 84
+ S D
Sbjct: 59 GVWSSQMRD 67
Score = 46.7 bits (109), Expect = 3e-08
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
+L + +AD T +IW+ + ++ L N+ + F++T+S DG +LW+++
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288
Query: 63 TGEVDKEY-----SGHQKAITSLAFCD 84
TGE + G + + +
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASN 315
Score = 39.0 bits (89), Expect = 2e-05
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
+ + + D ++W+ E + + L R D +++ S D R+W++ET
Sbjct: 150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS---LQFDGIHVVSGSLDTSIRVWDVET 206
Query: 64 GEVDKEYSGHQKAITSLAFCD 84
G +GHQ + + D
Sbjct: 207 GNCIHTLTGHQSLTSGMELKD 227
Score = 37.9 bits (86), Expect = 4e-05
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 5 ATTSADQTARIWNTEDFSLVRELGT----ANQRWVWDAAFTLDSKFLLTASSDGVA---- 56
T+S D T ++W+ + +R L T + VW + S +G
Sbjct: 274 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 333
Query: 57 RLWN 60
+ +
Sbjct: 334 LVLD 337
Score = 34.8 bits (78), Expect = 4e-04
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
+ + S D + R+W+ E + + T + L L++ ++D ++W+I
Sbjct: 189 HVVSGSLDTSIRVWDVETGNCIH---TLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 244
Score = 34.4 bits (77), Expect = 6e-04
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD 43
+ + S D T ++W+ +R L + VW + +
Sbjct: 29 RIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRDN 68
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 48.4 bits (113), Expect = 8e-09
Identities = 7/46 (15%), Positives = 21/46 (45%)
Query: 39 AFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCD 84
+ +++T + D + R+++ + + SGH + +L +
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63
Score = 41.4 bits (95), Expect = 2e-06
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE-VDKEYSGHQKAITSLAF 82
+ + S +L + S+ ++N+ +G+ V I S+ F
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF 332
Score = 41.4 bits (95), Expect = 2e-06
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
+ + ++ I+N LV + +W F + DG + L +
Sbjct: 294 DNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 352
Query: 62 E 62
+
Sbjct: 353 D 353
Score = 36.0 bits (81), Expect = 2e-04
Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
+ T + D+ R++++ + + +L + + VW + L++ S+D R+W+I+
Sbjct: 25 YVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIK 82
Query: 63 T 63
Sbjct: 83 K 83
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1
{Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 47.7 bits (111), Expect = 1e-08
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 32 QRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS-GHQKAITSLAFCDF 85
+ + + + D K L +A ++G W+I TG ++ + H IT +
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66
Score = 44.6 bits (103), Expect = 2e-07
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 5 ATTSADQTARIWNTEDFSLVREL-GTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
AT S D + +WN S + A+ ++ L+ +++A D + WN+
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
Score = 35.7 bits (80), Expect = 2e-04
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 1/83 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L + A+ W+ R + + T L T S D ++
Sbjct: 26 TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT-SKGDLFTVSWDDHLKVVPAG 84
Query: 63 TGEVDKEYSGHQKAITSLAFCDF 85
VD + K +
Sbjct: 85 GSGVDSSKAVANKLSSQPLGLAV 107
Score = 28.0 bits (60), Expect = 0.13
Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE---VDKEYSGHQKAITSLAFCD 84
+ V +++ D+ L T S D +WN+ + + + ++ S+ + +
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN 279
Score = 26.1 bits (55), Expect = 0.59
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 64 GEVDKEYSGHQKAITSLAFC 83
G +D+ GH KAIT+L+
Sbjct: 2 GSIDQVRYGHNKAITALSSS 21
Score = 24.2 bits (50), Expect = 2.6
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 2 GLLATTSADQTARIWN 17
+ + D + WN
Sbjct: 281 TTIVSAGQDSNIKFWN 296
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 46.8 bits (109), Expect = 3e-08
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 34 WVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEY---SGHQKAITSLAFCD 84
++ D LL S DG ++ + + + ++ + F D
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Score = 43.3 bits (100), Expect = 5e-07
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Query: 1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
L T +D WN + ++ N+ V L A+SD +
Sbjct: 263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV--KIACSDNILCLATSDDTFKTN- 319
Query: 61 IETGEVDKEYSGHQKAITSL 80
+D+ + +I +
Sbjct: 320 ---AAIDQTIELNASSIYII 336
Score = 35.6 bits (80), Expect = 2e-04
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 28 GTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC 83
T V F+ KFL TA SDG+ WN++T + K ++ + + +
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIA 301
Score = 34.8 bits (78), Expect = 5e-04
Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 3 LLATTSADQTARIWNTEDFSLVREL--GTANQRWVWDAAFTLDSKFLLTASSD 53
LL TS D + ++ + + +L + + F ++ + +
Sbjct: 25 LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 45.6 bits (106), Expect = 7e-08
Identities = 10/85 (11%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL--TASSDGVARLW 59
+A + + + + + + + + D K LL ++ D +
Sbjct: 271 DEWRHKTASRFVVVLDAKTGERLAKFEM--GHEIDSINVSQDEKPLLYALSTGDKTLYIH 328
Query: 60 NIETGEVDKEYSGHQKAITSLAFCD 84
+ E+GE + + + D
Sbjct: 329 DAESGEELRSVNQLGHGPQVITTAD 353
Score = 30.9 bits (68), Expect = 0.010
Identities = 8/79 (10%), Positives = 23/79 (29%), Gaps = 13/79 (16%)
Query: 5 ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS----------DG 54
A +A + + E ++ + ++ + D F+ AS+
Sbjct: 22 AHFAAVTQQFVIDGEAGRVIGMIDGG---FLPNPVVADDGSFIAHASTVFSRIARGERTD 78
Query: 55 VARLWNIETGEVDKEYSGH 73
+++ T +
Sbjct: 79 YVEVFDPVTLLPTADIELP 97
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 371
Score = 44.8 bits (104), Expect = 1e-07
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 3 LLATTSADQTARIWN--TEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
+A + I+ + V EL + V + DS ++T +D A +W
Sbjct: 21 QIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79
Score = 43.7 bits (101), Expect = 4e-07
Identities = 5/51 (9%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 35 VWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK--EYSGHQKAITSLAFC 83
+ A+ D + ++ ++ + + E H +T + +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Score = 32.5 bits (72), Expect = 0.003
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 6/68 (8%)
Query: 2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF----LLTASSDGVAR 57
+ D+ A + L + ++ V + K T DG
Sbjct: 297 ARERFQNLDKKASSEGSAAAG--AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 354
Query: 58 LWNIETGE 65
+W++ + E
Sbjct: 355 IWDVRSLE 362
Score = 23.3 bits (48), Expect = 6.4
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 2/81 (2%)
Query: 5 ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG 64
A S D T + + + V L + F +S L+ A D L+ ++
Sbjct: 217 AWVSHDSTVCLADADKKMAVATLASETLPL-LAVTFITESS-LVAAGHDCFPVLFTYDSA 274
Query: 65 EVDKEYSGHQKAITSLAFCDF 85
+ G +
Sbjct: 275 AGKLSFGGRLDVPKQSSQRGL 295
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 44.5 bits (103), Expect = 2e-07
Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 5/66 (7%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
++ + + + D + D K ++ DG + +E
Sbjct: 290 YYQGAPEKGVLLKYDVKTRKVTEVKN-----NLTDLRLSADRKTVMVRKDDGKIYTFPLE 344
Query: 63 TGEVDK 68
E ++
Sbjct: 345 KPEDER 350
Score = 32.9 bits (73), Expect = 0.002
Identities = 10/83 (12%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDG--VARLWN 60
L+A S Q A I + +++ + D+K + +++
Sbjct: 17 LIAFVSRGQ-AFIQDVSGTYVLK---VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYD 72
Query: 61 IETGEVDKEYSGHQKAITSLAFC 83
TG+ +++ + + ++
Sbjct: 73 YRTGKA-EKFEENLGNVFAMGVD 94
Score = 31.8 bits (70), Expect = 0.006
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
+ + + A GV ++++T +V + +T L
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRL 322
Score = 25.2 bits (53), Expect = 1.0
Identities = 11/71 (15%), Positives = 18/71 (25%), Gaps = 2/71 (2%)
Query: 8 SADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD 67
Q +++ E + + AF DSK L S + +
Sbjct: 156 YVMQAIHVYDMEGRKIFAATT--ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS 213
Query: 68 KEYSGHQKAIT 78
E I
Sbjct: 214 FEVVSKPFVIP 224
Score = 22.9 bits (47), Expect = 7.7
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 34 WVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
+ F+ L+ S G A + ++ V K I +
Sbjct: 4 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK--VPEPLRIRYVRR 50
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 44.2 bits (102), Expect = 2e-07
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 5 ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
AT S D I++ + + + A++ V + + S L+++ +D + WN+
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV 286
Score = 38.0 bits (86), Expect = 4e-05
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 10/62 (16%)
Query: 23 LVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
+++ + + + + + L++ S DG W+ + H I SL
Sbjct: 5 VLKTI-SGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDN 54
Query: 83 CD 84
Sbjct: 55 SK 56
Score = 35.3 bits (79), Expect = 3e-04
Identities = 6/55 (10%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIET-GEVDKEYSGHQKAITSLAFCD 84
++ + T S D +++++ ++ K + H+ + +L +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 268
Score = 24.9 bits (52), Expect = 1.3
Identities = 4/43 (9%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF 46
L + S D W++ + + + + ++
Sbjct: 24 LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKAQEY 60
Score = 24.9 bits (52), Expect = 1.5
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 2 GLLATTSADQTARIWN 17
L ++ AD + WN
Sbjct: 270 STLVSSGADACIKRWN 285
Score = 23.4 bits (48), Expect = 6.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 63 TGEVDKEYSGHQKAITSLAF 82
EV K SGH K IT+L
Sbjct: 2 HDEVLKTISGHNKGITALTV 21
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 44.1 bits (102), Expect = 2e-07
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 3 LLATTSADQTARIWNTEDFSLVREL-GTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
AT AD T R+W+ V++ Q +++ S DG +
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
Query: 61 I 61
+
Sbjct: 325 L 325
Score = 39.1 bits (89), Expect = 1e-05
Identities = 9/53 (16%), Positives = 24/53 (45%)
Query: 31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC 83
+ A LDS+ T +D R+W++ T + ++++ ++ + +
Sbjct: 250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 302
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1
(beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 44.1 bits (102), Expect = 3e-07
Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 29 TANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF 85
+ + V+ D + +++ D ++W+ T E + +GH ++ L + +
Sbjct: 12 SETSKGVY--CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 66
Score = 38.3 bits (87), Expect = 3e-05
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
L+ + S+D T R+W+ E + +R D+K +++ + DG ++W++
Sbjct: 190 LVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 246
Query: 63 TGEVD---------KEYSGHQKAITSLAF 82
+ H + L F
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQF 275
Score = 37.1 bits (84), Expect = 7e-05
Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 1 MGLLATTSADQTARIWNTEDFSLVRELG--------TANQRWVWDAAFTLDSKFLLTASS 52
+ + + D ++W+ R + V+ F D ++++S
Sbjct: 228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH 285
Query: 53 DGVARLWN 60
D +W+
Sbjct: 286 DDTILIWD 293
Score = 32.5 bits (72), Expect = 0.003
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 6 TTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE 65
+ S D+T ++WNT VR L ++R + + + +++ SSD RLW+IE G
Sbjct: 153 SASGDRTIKVWNTSTCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA 209
Query: 66 VDKEYSGHQ 74
+ GH+
Sbjct: 210 CLRVLEGHE 218
Score = 31.0 bits (68), Expect = 0.009
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAF 40
+ + D T +IW+ R L T + V +
Sbjct: 27 KIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY 63
Score = 27.1 bits (58), Expect = 0.28
Identities = 15/74 (20%), Positives = 32/74 (43%)
Query: 11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEY 70
++ +W+ + + D K++++AS D ++WN T E +
Sbjct: 115 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174
Query: 71 SGHQKAITSLAFCD 84
+GH++ I L + D
Sbjct: 175 NGHKRGIACLQYRD 188
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 43.6 bits (101), Expect = 3e-07
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKE 69
++ E + ++ + + + + D + + G ++ ET E +
Sbjct: 259 YNVLESFDLEKNASIKRVPLPH--SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316
Query: 70 YSGHQKAITSLA 81
A SLA
Sbjct: 317 VDLPGNASMSLA 328
Score = 38.2 bits (87), Expect = 2e-05
Identities = 7/74 (9%), Positives = 20/74 (27%), Gaps = 2/74 (2%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQ-RWVWDAAFTLDSKFLL-TASSDGVARLWN 60
+ + + +TE ++ + + A+ + T + +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 61 IETGEVDKEYSGHQ 74
+ TGE
Sbjct: 63 LVTGETLGRIDLST 76
Score = 26.3 bits (56), Expect = 0.55
Identities = 5/40 (12%), Positives = 11/40 (27%), Gaps = 2/40 (5%)
Query: 45 KFLLTASSDGVARLWNIETGEVDKEY--SGHQKAITSLAF 82
++L + + + E VDK +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMV 41
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 43.6 bits (101), Expect = 4e-07
Identities = 7/65 (10%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Query: 2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
++ + L++ + + AF L + ++N
Sbjct: 263 DPNQIYGVLNRLAKYDLKQRKLIKAANLDH--TYYCVAFDKKGDKLYLGGTFNDLAVFNP 320
Query: 62 ETGEV 66
+T E
Sbjct: 321 DTLEK 325
Score = 38.2 bits (87), Expect = 3e-05
Identities = 5/74 (6%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL-TASSDGVARLWNI 61
+ T+ + + ++ + ++ A D++ + G ++
Sbjct: 10 YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 69
Query: 62 ETGEVDKEYSGHQK 75
+T + +
Sbjct: 70 DTCKNTFHANLSSV 83
Score = 32.0 bits (71), Expect = 0.005
Identities = 3/45 (6%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 39 AFTLDSKFLLTASSDGVARLWNIETGEVDKEYS-GHQKAITSLAF 82
A ++++ + + ++ + V K + +
Sbjct: 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMM 47
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 40.2 bits (92), Expect = 7e-06
Identities = 8/92 (8%), Positives = 21/92 (22%), Gaps = 12/92 (13%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQR------------WVWDAAFTLDSKFLLTA 50
+ S D ++W+ + + + + T
Sbjct: 26 FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85
Query: 51 SSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
S G + I + K+ + +
Sbjct: 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDM 117
Score = 36.8 bits (83), Expect = 1e-04
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC 83
+ WV +F + L +A DG R W+++T E + H I
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 340
Score = 36.4 bits (82), Expect = 1e-04
Identities = 7/40 (17%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 28 GTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD 67
G A+ ++ + + F ++ S DG ++W+ + + +
Sbjct: 10 GKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNE 47
Score = 30.2 bits (66), Expect = 0.019
Identities = 8/82 (9%), Positives = 21/82 (25%), Gaps = 8/82 (9%)
Query: 5 ATTSADQTARIWNTEDFSLVRELGTANQRWV----WDAAFTLDSKFLLTASSDGVARLWN 60
+ D R W+ + + L + + A L V
Sbjct: 305 CSAGWDGKLRFWDVKTKERITTL-NMHCDDIEIEEDILAVDEHGDSLAEPGVFDV---KF 360
Query: 61 IETGEVDKEYSGHQKAITSLAF 82
++ G + +++ +
Sbjct: 361 LKKGWRSGMGADLNESLCCVCL 382
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 38.6 bits (89), Expect = 2e-05
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
T + + + + L T V + + ++L DG + ++
Sbjct: 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLW 91
Query: 63 TGEVD-----KEYSGHQKAITSLAF 82
E K S + TS
Sbjct: 92 MKEPTTVAEIKIGSEARSIETSKME 116
Score = 23.6 bits (50), Expect = 4.0
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 39 AFTLDSK--FLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
D + F +T G L + T E+ A+
Sbjct: 25 MNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRL 69
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 34.1 bits (76), Expect = 8e-04
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Query: 11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS-DGVARLWNIETGEV 66
T + +T + + A T D K + A S + + T +
Sbjct: 224 NTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI 278
Score = 24.4 bits (51), Expect = 1.8
Identities = 2/34 (5%), Positives = 7/34 (20%), Gaps = 1/34 (2%)
Query: 49 TASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
S + ++ + +V
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVI 39
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 33.0 bits (74), Expect = 0.002
Identities = 5/67 (7%), Positives = 15/67 (22%), Gaps = 4/67 (5%)
Query: 2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS--DGVARLW 59
+ +A + + D A+S V ++
Sbjct: 285 HSRSCLAAAENTSSVTASVGQTSGPISN--GHDSDAIIAAQDGASDNYANSAGTEVLDIY 342
Query: 60 NIETGEV 66
+ + +
Sbjct: 343 DAASDQD 349
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 32.3 bits (72), Expect = 0.003
Identities = 8/82 (9%), Positives = 18/82 (21%), Gaps = 11/82 (13%)
Query: 1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL--TASSDGVARL 58
+ + V L + D K L ++ + +
Sbjct: 249 TQVWVYDLKSKQRVARWDLAQQKVEPLV--------SIQVSEDDKPLFYGLTATSDLV-V 299
Query: 59 WNIETGEVDKEYSGHQKAITSL 80
+ TG + + L
Sbjct: 300 MDARTGALQHVEKQIGNTSSLL 321
Score = 29.6 bits (65), Expect = 0.035
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 10/71 (14%)
Query: 25 RELGTANQRWVWDAAFTLDSKFLLTASS----------DGVARLWNIETGEVDKEYSGHQ 74
+ LG + + A D K + A++ V + + T + E
Sbjct: 9 KLLGQIDGGFGPGFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTLDHAGEIVIPA 68
Query: 75 KAITSLAFCDF 85
K +
Sbjct: 69 KHAQHVPSPYN 79
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 32.1 bits (71), Expect = 0.004
Identities = 9/85 (10%), Positives = 21/85 (24%), Gaps = 2/85 (2%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLLTASS-DGVARLWN 60
+ + Q +WN + V + D ++L + +
Sbjct: 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65
Query: 61 IETGEVDKEYSGHQKAITSLAFCDF 85
I + ++ SL
Sbjct: 66 IAPDDGALTFAAESALPGSLTHIST 90
Score = 24.4 bits (51), Expect = 2.2
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 3/37 (8%)
Query: 33 RWVWDAAFTLDSKFLLTASSD-GVARLWNI--ETGEV 66
K+L+ A ++ I E G +
Sbjct: 276 TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 426
Score = 29.2 bits (64), Expect = 0.048
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 3/69 (4%)
Query: 16 WNTEDFSLVRELGTANQRWVWDAAFTLDSK--FLLTASSDGVARLWNIETGEVDKEYSGH 73
W + ++ + LD F +T G L + ++ ++ K
Sbjct: 2 WGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG 61
Query: 74 QKAITSLAF 82
A+
Sbjct: 62 -YAVHISRM 69
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 23.8 bits (51), Expect = 2.9
Identities = 10/56 (17%), Positives = 21/56 (37%)
Query: 15 IWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEY 70
+ T + L + +G A + + + SD +AR I +++ Y
Sbjct: 62 VLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRY 117
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 412
Score = 24.0 bits (51), Expect = 3.6
Identities = 11/55 (20%), Positives = 18/55 (32%)
Query: 3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVAR 57
LL T + A W + +G + +L+ + L GVA
Sbjct: 70 LLTETIQNPEALKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAA 124
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 347
Score = 23.0 bits (48), Expect = 7.2
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 15 IWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGV 55
E + V +GT ++S AS+ +
Sbjct: 96 FDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSEL 136
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 263
Score = 22.6 bits (48), Expect = 8.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 14 RIWNTEDFSLVRELG 28
R W EDF + R LG
Sbjct: 1 RQWALEDFEIGRPLG 15
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.129 0.400
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 291,610
Number of extensions: 9981
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 111
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.8 bits)