BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy706
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NE7|A Chain A, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|B Chain B, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|C Chain C, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|D Chain D, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|E Chain E, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|F Chain F, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
Length = 289
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Query: 6 ALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFV 65
LPRDHPESYH +MW+NFF HIDI PEN HILDGNA DL AEC +E+ IK AGGI LFV
Sbjct: 76 GLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFV 135
Query: 66 GGEVLIGQIRSYNSESRKISRNTDVK 91
GG G I ++N + T VK
Sbjct: 136 GGIGPDGHI-AFNEPGSSLVSRTRVK 160
>pdb|1JT9|A Chain A, Structure Of The Mutant F174a T Form Of The
Glucosamine-6-Phosphate Deaminase From E.Coli
Length = 266
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 6 ALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFV 65
LP++HPESY+ +M NFF H+DI EN+++L+GNAPD+ AEC QYE+ I+ G IHLF+
Sbjct: 76 GLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSYGKIHLFM 135
Query: 66 GGEVLIGQIRSYNSESRKISRNTDVK 91
GG G I ++N + ++ T +K
Sbjct: 136 GGVGNDGHI-AFNEPASSLASRTRIK 160
>pdb|1HOR|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOR|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOT|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1HOT|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1CD5|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T Conformer
pdb|1FQO|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FQO|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FRZ|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FRZ|B Chain B, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FS5|A Chain A, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS5|B Chain B, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS6|A Chain A, Glucosamine-6-phosphate Deaminase From E.coli, T
Conformer, At 2.2a Resolution
pdb|1FSF|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T
Conformer, At 1.9a Resolution
pdb|2WU1|A Chain A, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites.
pdb|2WU1|B Chain B, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites
Length = 266
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 6 ALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFV 65
LP++HPESY+ +M NFF H+DI EN+++L+GNAPD+ AEC QYE+ I+ G IHLF+
Sbjct: 76 GLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSYGKIHLFM 135
Query: 66 GGEVLIGQIRSYNSESRKISRNTDVK 91
GG G I ++N + ++ T +K
Sbjct: 136 GGVGNDGHI-AFNEPASSLASRTRIK 160
>pdb|3HN6|A Chain A, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|B Chain B, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|C Chain C, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|D Chain D, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|E Chain E, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|F Chain F, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
Length = 289
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Query: 6 ALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFV 65
+ +HPESYH +MW+NFFSHIDI+ EN++IL+GNA +L EC +YEK IK GGI LFV
Sbjct: 97 GIEENHPESYHSFMWNNFFSHIDIKKENINILNGNASNLKKECEEYEKKIKSFGGIMLFV 156
Query: 66 GGEVLIGQIRSYNSESRKISRNTDVK 91
GG G I ++N ++ T +K
Sbjct: 157 GGIGPDGHI-AFNEPGSSLTSRTRIK 181
>pdb|2BKV|A Chain A, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKV|B Chain B, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKX|A Chain A, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKX|B Chain B, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
Length = 242
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 6 ALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAG 59
L D P SYH+YM FF HID +P I +GNA DL AEC +YE+ + G
Sbjct: 71 GLSSDDPNSYHFYMNDRFFQHIDSKPSRHFIPNGNADDLEAECRRYEQLVDSLG 124
>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With A Beta-Carboline Ligand
pdb|3BQR|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With An Imidazo-Pyridazine Ligand
Length = 283
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 17 YYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY 51
+Y+ +H D++PEN+ +LD N P+ + + +
Sbjct: 122 HYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDF 156
>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
pdb|2J90|B Chain B, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
Length = 304
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 1 MAKAKALPRDHPESYH-------YYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY 51
+A+ ++L D + +Y+ +H D++PEN+ +LD N P+ + + +
Sbjct: 120 LAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDF 177
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 1 MAKAKALPRDHPESYH-------YYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY 51
+A+ ++L D + +Y+ +H D++PEN+ +LD N P+ + + +
Sbjct: 106 LAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDF 163
>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant
Length = 334
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 17 YYMWHNFFSHIDIQPENVHILDGNAPDLH--------AECVQYEKDIKEAGGIHLFVGGE 68
YY+ +H D++PEN+ +LD N P A + + + K G FV E
Sbjct: 128 YYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPAFVAPE 187
Query: 69 VL 70
++
Sbjct: 188 IV 189
>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304
Length = 326
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 17 YYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY 51
YY+ +H D++PEN+ +LD N P + + +
Sbjct: 128 YYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDF 162
>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain With
Amppnp
pdb|3DGK|A Chain A, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain
Length = 295
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 17 YYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY 51
YY+ +H D++PEN+ +LD N P + + +
Sbjct: 128 YYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDF 162
>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp
pdb|3GU5|A Chain A, Crystal Structure Of Dapkq23v-Amppnp-Mg2+
pdb|3GU6|A Chain A, Crystal Structure Of Dapkq23v-Adp
pdb|3GU7|A Chain A, Crystal Structure Of Dapkq23v-Adp-Mg2+
Length = 295
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 17 YYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY 51
YY+ +H D++PEN+ +LD N P + + +
Sbjct: 128 YYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDF 162
>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase
In Complex With Amppnp And Mg2+
Length = 295
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 17 YYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY 51
YY+ +H D++PEN+ +LD N P + + +
Sbjct: 128 YYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDF 162
>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YA9|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YAA|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAA|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAB|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
pdb|2YAB|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
Length = 361
Score = 30.4 bits (67), Expect = 0.23, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 18 YMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY 51
Y+ +H D++PEN+ +LD N P H + + +
Sbjct: 130 YLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDF 163
>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine
pdb|3GUB|A Chain A, Crystal Structure Of Dapkl93g Complexed With N6-(2-
Phenylethyl)adenosine
Length = 295
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 17 YYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY 51
YY+ +H D++PEN+ +LD N P + + +
Sbjct: 128 YYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDF 162
>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With
Bound Inhibitor Fragment
Length = 293
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 17 YYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY 51
YY+ +H D++PEN+ +LD N P + + +
Sbjct: 127 YYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDF 161
>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex
Length = 334
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 17 YYMWHNFFSHIDIQPENVHILDGNAP 42
YY+ +H D++PEN+ +LD N P
Sbjct: 128 YYLHSLQIAHFDLKPENIMLLDRNVP 153
>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|D Chain D, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|E Chain E, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|F Chain F, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|G Chain G, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|H Chain H, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
Length = 321
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 18 YMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY 51
Y+ +H D++PEN+ +LD N P H + + +
Sbjct: 130 YLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDF 163
>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|E Chain E, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|C Chain C, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|B Chain B, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|F Chain F, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|D Chain D, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|H Chain H, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|G Chain G, Human Death-Associated Kinase Drp-1, Mutant S308d D40
Length = 321
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 18 YMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY 51
Y+ +H D++PEN+ +LD N P H + + +
Sbjct: 130 YLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDF 163
>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312
pdb|2XZS|B Chain B, Death Associated Protein Kinase 1 Residues 1-312
Length = 312
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 17 YYMWHNFFSHIDIQPENVHILDGNAP 42
YY+ +H D++PEN+ +LD N P
Sbjct: 128 YYLHSLQIAHFDLKPENIMLLDRNVP 153
>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|B Chain B, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|C Chain C, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|D Chain D, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2CKE|A Chain A, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|B Chain B, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|C Chain C, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|D Chain D, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
Length = 321
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 18 YMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY 51
Y+ +H D++PEN+ +LD N P H + + +
Sbjct: 130 YLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDF 163
>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302
Length = 302
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 17 YYMWHNFFSHIDIQPENVHILDGNAP 42
YY+ +H D++PEN+ +LD N P
Sbjct: 128 YYLHSLQIAHFDLKPENIMLLDRNVP 153
>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
Length = 321
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 18 YMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY 51
Y+ +H D++PEN+ +LD N P H + + +
Sbjct: 130 YLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDF 163
>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In
Complex With A Ruthenium Octasporine Ligand (Osv)
pdb|2Y4P|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|3ZXT|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
Length = 285
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 17 YYMWHNFFSHIDIQPENVHILDGNAP 42
YY+ +H D++PEN+ +LD N P
Sbjct: 128 YYLHSLQIAHFDLKPENIMLLDRNVP 153
>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|D Chain D, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|E Chain E, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|F Chain F, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|G Chain G, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|H Chain H, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
Length = 288
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 18 YMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY 51
Y+ +H D++PEN+ +LD N P H + + +
Sbjct: 130 YLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDF 163
>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277
Length = 277
Score = 30.0 bits (66), Expect = 0.30, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 17 YYMWHNFFSHIDIQPENVHILDGNAP 42
YY+ +H D++PEN+ +LD N P
Sbjct: 128 YYLHSLQIAHFDLKPENIMLLDRNVP 153
>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVX|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVY|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
Length = 278
Score = 30.0 bits (66), Expect = 0.30, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 17 YYMWHNFFSHIDIQPENVHILDGNAP 42
YY+ +H D++PEN+ +LD N P
Sbjct: 128 YYLHSLQIAHFDLKPENIMLLDRNVP 153
>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mn.
pdb|1JKL|A Chain A, 1.6a X-Ray Structure Of Binary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue
pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|A Chain A, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|B Chain B, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mg.
pdb|3F5G|A Chain A, Crystal Structure Of Death Associated Protein Kinase In
Complex With Adp And Mg2+
pdb|3EH9|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Adp
pdb|3EHA|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Amppnp
Length = 294
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 17 YYMWHNFFSHIDIQPENVHILDGNAP 42
YY+ +H D++PEN+ +LD N P
Sbjct: 127 YYLHSLQIAHFDLKPENIMLLDRNVP 152
>pdb|1PBT|A Chain A, The Crystal Structure Of Tm1154, Oxidoreductase, SolDEVB
Family From Thermotoga Maritima
Length = 244
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MAKAKALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEA 58
++ + +P D +S + FS I NVH +D + P + C +YE++I+ A
Sbjct: 88 LSDERYVPLDSDQSNFRNINEVLFSRAKIPSGNVHYVDTSLP-IEKACEKYEREIRSA 144
>pdb|1VL1|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase (Tm1154)
From Thermotoga Maritima At 1.70a Resolution
Length = 232
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MAKAKALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEA 58
++ + +P D +S + FS I NVH +D + P + C +YE++I+ A
Sbjct: 78 LSDERYVPLDSDQSNFRNINEVLFSRAKIPSGNVHYVDTSLP-IEKACEKYEREIRSA 134
>pdb|2WEF|A Chain A, Human 3'(2'), 5'-Bisphosphate Nucleotidase 1 (Bpnt1) In
Complex With Amp, Po4 And Magnesium
Length = 311
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 31 PENV-HILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLIGQIRSYNSESRKI 84
PE + H + G D+H +QY KD+K H+ G ++ +R+Y+ + ++
Sbjct: 247 PEVILHAVGGKLTDIHGNVLQYHKDVK-----HMNSAG--VLATLRNYDYYASRV 294
>pdb|3TX2|A Chain A, Structure Of A Probable 6-Phosphogluconolactonase From
Mycobacterium Abscessus
Length = 251
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 7 LPRDHPESYHYYMWHNFFSHIDIQPENVHILDGN----APDLHAECVQYEK 53
+P+ PE + W H++ N+H + + DL A + YE+
Sbjct: 80 VPKTDPERNAWQAWEALLEHVNFPLRNMHAMPNSESEYGTDLDAAALAYEQ 130
>pdb|1ZU2|A Chain A, Solution Nmr Structure Of The Plant Tom20 Mitochondrial
Import Receptor From Arabidopsis Thaliana
Length = 158
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 7 LPRDHPESYHYY-MWHNFFSH-IDIQPENVHIL-----DGNAPDLHAEC 48
L D E+ H + + FF +D QP+N H L AP LHAE
Sbjct: 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA 144
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 18 YMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY--------EKDIKEAGGIHLFVGGEV 69
YM N H D++PEN+ +L+ + D + + + K +K+ G ++ EV
Sbjct: 164 YMHKNKIVHRDLKPENL-LLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEV 222
Query: 70 LIG 72
L G
Sbjct: 223 LHG 225
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 18 YMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY--------EKDIKEAGGIHLFVGGEV 69
YM N H D++PEN+ +L+ + D + + + K +K+ G ++ EV
Sbjct: 141 YMHKNKIVHRDLKPENL-LLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEV 199
Query: 70 LIG 72
L G
Sbjct: 200 LHG 202
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 18 YMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY--------EKDIKEAGGIHLFVGGEV 69
YM N H D++PEN+ +L+ + D + + + K +K+ G ++ EV
Sbjct: 165 YMHKNKIVHRDLKPENL-LLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEV 223
Query: 70 LIG 72
L G
Sbjct: 224 LHG 226
>pdb|1ID8|A Chain A, Nmr Structure Of Glutamate Mutase (B12-Binding Subunit)
Complexed With The Vitamin B12 Nucleotide
pdb|1FMF|A Chain A, Refined Solution Structure Of The (13c,15n-Labeled) B12-
Binding Subunit Of Glutamate Mutase From Clostridium
Tetanomorphum
pdb|1BE1|A Chain A, Glutamate Mutase (B12-Binding Subunit), Nmr, Minimized
Average Structure
Length = 137
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 47 ECVQYEKDIKEAG--GIHLFVGGEVLIGQIRSYNSESR 82
+C + EAG GI LFVGG +++G+ + E R
Sbjct: 70 DCKGLREKCDEAGLKGIKLFVGGNIVVGKQNWPDVEQR 107
>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
pdb|3MA6|B Chain B, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
Length = 298
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 18 YMWHNFFSHIDIQPENVHILDGNAPDLHAECVQY--------EKDIKEAGGIHLFVGGEV 69
YM N H D++PEN+ +L+ + D + + + K +K+ G ++ EV
Sbjct: 147 YMHKNKIVHRDLKPENL-LLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEV 205
Query: 70 LIG 72
L G
Sbjct: 206 LHG 208
>pdb|3DP7|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
pdb|3DP7|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 363
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 16 HYYMWHNFFSHIDI----QPENVHILDGNAPDLHAECVQYEKDIK 56
H+Y +F ++I P+ + + GN +CVQY K+++
Sbjct: 161 HFYSDQSFGKALEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEVE 205
>pdb|1JP4|A Chain A, Crystal Structure Of An Enzyme Displaying Both Inositol-
Polyphosphate 1-Phosphatase And 3'-Phosphoadenosine-5'-
Phosphate Phosphatase Activities
Length = 308
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 31 PENV-HILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLIGQIRSYNSESRKI 84
PE + H + G D+H +QY+K++K H+ G ++ +R+Y + ++
Sbjct: 251 PEVILHAVGGKLTDIHGNPLQYDKEVK-----HMNSAG--VLAALRNYEYYASRV 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,173,509
Number of Sequences: 62578
Number of extensions: 124961
Number of successful extensions: 318
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 43
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)