Query psy706
Match_columns 91
No_of_seqs 130 out of 1095
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 17:05:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00285 glucosamine-6-phospha 100.0 2.1E-33 4.5E-38 198.6 8.9 90 1-90 71-160 (253)
2 KOG3148|consensus 100.0 1.1E-33 2.4E-38 193.8 5.6 90 1-90 71-160 (273)
3 PRK09762 galactosamine-6-phosp 100.0 6.7E-32 1.4E-36 189.2 8.8 88 1-89 66-153 (232)
4 cd01400 6PGL 6PGL: 6-Phosphogl 100.0 2E-31 4.3E-36 185.1 8.5 87 1-89 58-150 (219)
5 TIGR00502 nagB glucosamine-6-p 100.0 3E-31 6.6E-36 188.0 8.4 90 1-90 71-160 (259)
6 PF01182 Glucosamine_iso: Gluc 100.0 2.3E-31 4.9E-36 182.6 6.0 82 1-83 58-145 (199)
7 PLN02360 probable 6-phosphoglu 100.0 1.4E-30 2.9E-35 185.8 8.1 85 1-87 79-178 (268)
8 TIGR01198 pgl 6-phosphoglucono 100.0 1.5E-30 3.3E-35 182.3 8.0 88 1-89 62-156 (233)
9 PRK02122 glucosamine-6-phospha 100.0 4.5E-30 9.7E-35 200.7 8.4 90 1-90 97-188 (652)
10 COG0363 NagB 6-phosphogluconol 100.0 3.4E-29 7.5E-34 176.4 6.8 82 1-85 69-152 (238)
11 KOG3147|consensus 99.9 4.1E-26 9E-31 160.3 6.9 89 1-90 77-173 (252)
12 PRK12358 putative 6-phosphoglu 99.9 2.8E-25 6.2E-30 156.1 6.8 83 1-90 65-149 (239)
13 PRK00443 nagB glucosamine-6-ph 99.9 3.3E-23 7.2E-28 146.1 8.5 89 1-89 71-159 (261)
14 cd01399 GlcN6P_deaminase GlcN6 99.9 5E-23 1.1E-27 142.5 8.3 88 1-88 57-144 (232)
15 cd00458 SugarP_isomerase Sugar 99.7 3E-18 6.4E-23 115.1 6.7 68 1-69 56-123 (169)
16 COG3150 Predicted esterase [Ge 79.1 11 0.00024 26.0 6.1 63 11-75 11-73 (191)
17 PRK13456 DNA protection protei 76.7 0.89 1.9E-05 31.4 0.2 39 47-85 122-182 (186)
18 PF00098 zf-CCHC: Zinc knuckle 68.2 3.5 7.6E-05 17.6 1.1 12 68-79 6-17 (18)
19 PF03808 Glyco_tran_WecB: Glyc 64.4 11 0.00023 25.1 3.4 23 47-70 89-111 (172)
20 TIGR00696 wecB_tagA_cpsF bacte 62.9 12 0.00027 25.2 3.5 21 49-70 90-110 (177)
21 PF05728 UPF0227: Uncharacteri 58.0 43 0.00093 22.7 5.5 63 11-75 11-73 (187)
22 KOG1205|consensus 57.8 32 0.00069 25.2 5.0 38 33-70 64-101 (282)
23 cd06533 Glyco_transf_WecG_TagA 57.7 17 0.00036 24.2 3.4 19 51-70 91-109 (171)
24 PRK03692 putative UDP-N-acetyl 57.3 17 0.00037 25.8 3.5 22 48-70 146-167 (243)
25 KOG1800|consensus 55.3 24 0.00052 27.5 4.2 23 60-82 108-130 (468)
26 PF04430 DUF498: Protein of un 54.0 16 0.00034 22.5 2.6 23 49-71 42-64 (110)
27 PF08497 Radical_SAM_N: Radica 53.5 24 0.00052 26.2 3.8 24 35-58 99-123 (302)
28 cd00248 Mth938-like Mth938-lik 53.3 23 0.0005 21.9 3.3 22 51-73 44-65 (109)
29 KOG0452|consensus 50.0 35 0.00075 28.1 4.4 39 21-66 734-772 (892)
30 KOG3716|consensus 49.5 1.1E+02 0.0025 25.4 7.2 72 3-76 416-497 (764)
31 PRK03359 putative electron tra 49.2 36 0.00078 24.4 4.1 56 17-76 71-129 (256)
32 KOG3363|consensus 47.4 15 0.00032 25.2 1.8 18 60-77 111-128 (196)
33 COG1922 WecG Teichoic acid bio 47.2 28 0.00061 25.1 3.3 21 49-70 151-171 (253)
34 PF02662 FlpD: Methyl-viologen 47.0 23 0.0005 22.5 2.6 39 21-59 83-124 (124)
35 TIGR02069 cyanophycinase cyano 42.8 76 0.0016 22.5 5.0 50 19-68 16-65 (250)
36 TIGR00722 ttdA_fumA_fumB hydro 42.5 30 0.00066 25.2 2.9 18 11-28 188-205 (273)
37 cd05560 Xcc1710_like Xcc1710_l 42.4 19 0.00042 22.3 1.7 15 60-74 52-66 (109)
38 PRK10528 multifunctional acyl- 42.2 1E+02 0.0022 20.4 6.7 28 45-73 57-84 (191)
39 cd01840 SGNH_hydrolase_yrhL_li 40.2 55 0.0012 20.7 3.7 30 44-73 34-63 (150)
40 cd05126 Mth938 Mth938 domain. 39.3 47 0.001 21.0 3.1 25 48-74 48-72 (117)
41 PF00319 SRF-TF: SRF-type tran 39.2 23 0.0005 19.2 1.5 20 55-74 27-46 (51)
42 cd05125 Mth938_2P1-like Mth938 38.4 49 0.0011 20.8 3.1 21 51-71 45-65 (114)
43 COG1635 THI4 Ribulose 1,5-bisp 37.5 28 0.00061 25.2 2.1 30 47-76 17-46 (262)
44 smart00761 HDAC_interact Histo 37.0 13 0.00028 23.3 0.3 22 2-23 34-56 (102)
45 PRK12342 hypothetical protein; 36.8 77 0.0017 22.7 4.2 33 42-75 92-125 (254)
46 PRK08230 tartrate dehydratase 36.5 87 0.0019 23.2 4.5 19 10-28 197-215 (299)
47 PRK07807 inosine 5-monophospha 36.4 1.1E+02 0.0023 24.1 5.2 18 60-78 289-306 (479)
48 PRK13784 adenylosuccinate synt 35.3 50 0.0011 25.7 3.2 29 43-71 386-414 (428)
49 PF04301 DUF452: Protein of un 35.2 67 0.0015 22.5 3.6 69 1-69 93-175 (213)
50 PRK13787 adenylosuccinate synt 34.6 36 0.00078 26.4 2.4 30 43-72 387-416 (423)
51 PF11455 DUF3018: Protein of 34.3 74 0.0016 18.3 3.1 31 28-58 16-46 (65)
52 cd04506 SGNH_hydrolase_YpmR_li 34.2 1E+02 0.0023 20.1 4.4 29 44-72 50-80 (204)
53 COG1225 Bcp Peroxiredoxin [Pos 34.2 73 0.0016 21.3 3.5 29 44-72 46-74 (157)
54 PRK01254 hypothetical protein; 33.8 81 0.0017 26.2 4.3 25 33-57 120-145 (707)
55 COG0794 GutQ Predicted sugar p 33.6 39 0.00085 23.6 2.2 16 63-78 42-57 (202)
56 PRK05599 hypothetical protein; 33.6 1.1E+02 0.0023 20.8 4.5 38 33-70 50-87 (246)
57 KOG2960|consensus 33.5 62 0.0013 23.6 3.2 34 45-78 61-94 (328)
58 cd03145 GAT1_cyanophycinase Ty 33.1 1.3E+02 0.0028 20.6 4.8 43 17-59 15-57 (217)
59 PRK13551 agmatine deiminase; P 33.1 52 0.0011 24.8 3.0 34 48-81 182-225 (362)
60 COG3737 Uncharacterized conser 32.4 63 0.0014 21.0 2.9 25 47-71 56-80 (127)
61 TIGR00184 purA adenylosuccinat 32.3 59 0.0013 25.3 3.2 30 43-72 385-414 (425)
62 TIGR03790 conserved hypothetic 32.2 34 0.00074 25.6 1.8 30 8-39 8-37 (316)
63 PRK06079 enoyl-(acyl carrier p 31.6 1.3E+02 0.0028 20.5 4.7 38 33-70 56-93 (252)
64 PRK04293 adenylosuccinate synt 31.1 45 0.00097 25.1 2.3 29 43-71 297-325 (333)
65 PF00709 Adenylsucc_synt: Aden 30.9 43 0.00093 25.9 2.3 31 42-72 386-416 (421)
66 PRK12937 short chain dehydroge 30.7 1.4E+02 0.0031 19.8 4.6 39 32-70 55-93 (245)
67 PF00106 adh_short: short chai 30.4 97 0.0021 19.2 3.6 40 32-71 52-91 (167)
68 PRK13783 adenylosuccinate synt 30.1 96 0.0021 24.0 4.0 29 43-71 369-397 (404)
69 PRK13786 adenylosuccinate synt 30.0 47 0.001 25.8 2.3 29 43-71 388-416 (424)
70 PRK06138 short chain dehydroge 29.3 1.6E+02 0.0035 19.6 4.7 39 32-70 53-91 (252)
71 KOG1549|consensus 28.9 1.1E+02 0.0024 23.9 4.2 53 33-90 133-185 (428)
72 PLN00081 photosystem I reactio 28.8 28 0.00061 22.7 0.8 32 44-75 90-124 (141)
73 cd01473 vWA_CTRP CTRP for CS 28.8 1.8E+02 0.004 19.4 5.7 53 17-70 92-149 (192)
74 PRK13788 adenylosuccinate synt 28.8 54 0.0012 25.3 2.4 29 43-71 365-393 (404)
75 PF00850 Hist_deacetyl: Histon 28.7 74 0.0016 23.1 3.1 35 42-76 219-256 (311)
76 COG0104 PurA Adenylosuccinate 28.3 53 0.0012 25.6 2.3 29 43-71 390-418 (430)
77 smart00788 Adenylsucc_synt Ade 28.1 54 0.0012 25.4 2.4 29 43-71 387-415 (421)
78 COG0123 AcuC Deacetylases, inc 28.0 1.5E+02 0.0033 22.1 4.7 16 60-75 239-254 (340)
79 PHA02762 hypothetical protein; 28.0 46 0.001 18.6 1.5 22 59-80 25-48 (62)
80 PTZ00450 macrophage migration 27.7 57 0.0012 20.4 2.1 25 14-38 76-100 (113)
81 PF08759 DUF1792: Domain of un 27.5 1.6E+02 0.0035 20.9 4.5 27 47-73 151-180 (225)
82 PTZ00346 histone deacetylase; 27.5 1.4E+02 0.0029 23.4 4.4 33 43-75 248-283 (429)
83 KOG0085|consensus 27.0 64 0.0014 23.7 2.5 33 45-77 15-56 (359)
84 cd01471 vWA_micronemal_protein 26.8 72 0.0016 20.7 2.6 23 48-71 126-148 (186)
85 PRK12481 2-deoxy-D-gluconate 3 26.7 1.5E+02 0.0033 20.1 4.3 38 33-70 56-93 (251)
86 PRK07904 short chain dehydroge 26.7 1.3E+02 0.0029 20.5 4.0 40 33-73 61-100 (253)
87 PF02310 B12-binding: B12 bind 26.7 68 0.0015 19.2 2.3 22 50-71 94-115 (121)
88 PF01946 Thi4: Thi4 family; PD 26.6 28 0.00061 24.8 0.6 29 48-76 5-33 (230)
89 PRK08251 short chain dehydroge 26.5 1.9E+02 0.0041 19.3 4.7 39 32-70 53-91 (248)
90 PRK01117 adenylosuccinate synt 26.5 85 0.0018 24.4 3.2 30 43-72 389-418 (430)
91 TIGR02415 23BDH acetoin reduct 25.9 1.8E+02 0.0039 19.4 4.5 38 33-70 50-87 (254)
92 PRK12743 oxidoreductase; Provi 25.7 1.8E+02 0.004 19.6 4.5 39 32-70 52-90 (256)
93 COG0003 ArsA Predicted ATPase 25.2 51 0.0011 24.5 1.7 18 58-75 123-140 (322)
94 PRK08340 glucose-1-dehydrogena 25.0 1.8E+02 0.0038 19.7 4.4 38 33-70 49-86 (259)
95 PTZ00350 adenylosuccinate synt 24.9 92 0.002 24.3 3.1 30 43-72 400-429 (436)
96 PF01339 CheB_methylest: CheB 24.8 35 0.00076 23.0 0.8 14 61-74 118-131 (182)
97 PRK06603 enoyl-(acyl carrier p 24.8 1.5E+02 0.0033 20.3 4.0 33 39-71 65-97 (260)
98 KOG3655|consensus 24.5 37 0.0008 26.8 0.9 16 64-80 462-477 (484)
99 PRK07478 short chain dehydroge 24.5 1.9E+02 0.0042 19.4 4.5 38 34-71 57-94 (254)
100 PF08940 DUF1918: Domain of un 24.4 28 0.0006 19.6 0.2 12 70-81 43-54 (58)
101 TIGR01831 fabG_rel 3-oxoacyl-( 24.4 2.2E+02 0.0047 18.9 4.6 38 32-69 48-85 (239)
102 PRK06947 glucose-1-dehydrogena 24.4 2E+02 0.0043 19.2 4.5 39 32-70 52-90 (248)
103 PF13911 AhpC-TSA_2: AhpC/TSA 24.4 95 0.0021 18.7 2.6 21 50-71 4-24 (115)
104 KOG1355|consensus 24.1 95 0.0021 24.0 3.0 29 42-70 418-446 (455)
105 PRK08594 enoyl-(acyl carrier p 23.7 2E+02 0.0044 19.6 4.5 37 33-69 60-96 (257)
106 PRK07231 fabG 3-ketoacyl-(acyl 23.6 2.3E+02 0.0049 18.8 4.7 39 33-71 54-92 (251)
107 PRK05875 short chain dehydroge 23.6 2.2E+02 0.0047 19.4 4.6 39 32-70 58-96 (276)
108 cd01458 vWA_ku Ku70/Ku80 N-ter 23.4 2.4E+02 0.0052 19.0 5.2 26 47-73 150-175 (218)
109 PLN02513 adenylosuccinate synt 23.3 1.1E+02 0.0023 23.9 3.2 30 43-72 391-420 (427)
110 PRK12654 putative monovalent c 23.3 1E+02 0.0023 20.5 2.8 39 34-72 82-122 (151)
111 PRK05565 fabG 3-ketoacyl-(acyl 23.1 2.3E+02 0.005 18.6 4.7 39 33-71 56-94 (247)
112 COG1029 FwdB Formylmethanofura 23.1 3.5E+02 0.0076 21.1 5.8 62 2-70 195-256 (429)
113 PF11775 CobT_C: Cobalamin bio 23.0 1.5E+02 0.0032 21.1 3.6 27 45-71 162-188 (219)
114 TIGR03380 agmatine_aguA agmati 22.8 99 0.0021 23.3 2.9 33 49-81 180-222 (357)
115 COG1908 FrhD Coenzyme F420-red 22.8 88 0.0019 20.4 2.3 40 21-60 84-126 (132)
116 COG4075 Uncharacterized conser 22.5 74 0.0016 20.0 1.8 21 2-22 34-63 (110)
117 PRK09242 tropinone reductase; 22.2 2.6E+02 0.0055 18.8 4.8 39 32-70 60-98 (257)
118 KOG4064|consensus 22.2 85 0.0019 21.4 2.2 18 59-77 70-87 (196)
119 cd00018 AP2 DNA-binding domain 22.0 1.5E+02 0.0032 15.9 3.5 20 39-58 30-49 (61)
120 PRK12939 short chain dehydroge 21.9 2.5E+02 0.0054 18.6 4.6 39 33-71 57-95 (250)
121 PRK13785 adenylosuccinate synt 21.8 1.2E+02 0.0026 23.9 3.2 29 43-71 415-443 (454)
122 PRK05557 fabG 3-ketoacyl-(acyl 21.8 2.4E+02 0.0053 18.4 4.5 40 32-71 55-94 (248)
123 COG2001 Uncharacterized protei 21.6 1.4E+02 0.0029 19.9 3.1 15 44-58 47-61 (146)
124 PTZ00351 adenylosuccinate synt 21.5 1.1E+02 0.0023 25.3 3.0 31 43-73 673-703 (710)
125 PRK07024 short chain dehydroge 21.4 2.4E+02 0.0051 19.1 4.4 38 33-70 51-88 (257)
126 PRK07062 short chain dehydroge 21.3 2.4E+02 0.0052 19.0 4.5 38 33-70 60-97 (265)
127 PTZ00397 macrophage migration 21.2 62 0.0013 19.8 1.3 26 13-38 75-100 (116)
128 PRK04176 ribulose-1,5-biphosph 20.8 70 0.0015 22.6 1.7 27 49-75 14-40 (257)
129 PRK07097 gluconate 5-dehydroge 20.6 2.5E+02 0.0054 19.1 4.4 40 33-72 60-99 (265)
130 TIGR01829 AcAcCoA_reduct aceto 20.6 1.6E+02 0.0035 19.4 3.4 38 33-70 51-88 (242)
131 PRK12744 short chain dehydroge 20.6 2.8E+02 0.0061 18.7 4.8 38 33-70 62-99 (257)
132 PRK07677 short chain dehydroge 20.5 2.6E+02 0.0056 18.8 4.5 39 32-70 50-88 (252)
133 COG1712 Predicted dinucleotide 20.4 1.4E+02 0.003 21.7 3.1 25 45-70 70-94 (255)
134 PRK06720 hypothetical protein; 20.4 2.6E+02 0.0057 18.3 4.6 33 38-70 71-103 (169)
135 TIGR00345 arsA arsenite-activa 20.2 1.2E+02 0.0026 21.7 2.8 18 59-76 111-128 (284)
136 KOG2825|consensus 20.2 1.4E+02 0.003 22.2 3.1 28 48-75 128-157 (323)
137 TIGR03728 glyco_access_1 glyco 20.2 2.6E+02 0.0057 20.4 4.5 26 47-72 169-197 (265)
138 TIGR03206 benzo_BadH 2-hydroxy 20.1 2.8E+02 0.006 18.4 4.7 40 32-71 52-91 (250)
139 PF08002 DUF1697: Protein of u 20.1 1.7E+02 0.0038 18.7 3.3 38 29-68 40-79 (137)
140 COG1646 Predicted phosphate-bi 20.1 1.2E+02 0.0025 21.9 2.7 39 32-75 17-55 (240)
141 PRK07791 short chain dehydroge 20.0 2.8E+02 0.0061 19.3 4.7 38 33-70 65-102 (286)
No 1
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=100.00 E-value=2.1e-33 Score=198.59 Aligned_cols=90 Identities=49% Similarity=0.815 Sum_probs=84.8
Q ss_pred CcccccCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCCCccccCCCC
Q psy706 1 MAKAKALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLIGQIRSYNSE 80 (91)
Q Consensus 1 ~dEy~~v~~~~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dGH~As~~Pg 80 (91)
+||||+||.+|++||+++|+++||++++|+++|+|.+++...+++++|++|+++|++.++||++|||||+||||||||||
T Consensus 71 ~DEr~~Vp~~~~~Sn~~~~~~~l~~~~~ip~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~DGH~AslfP~ 150 (253)
T PTZ00285 71 MDEYVGLPRDHPQSYHYFMKENFFDHVDIKEENRHILNGTAPDLEEECRRYEEKIRAVGGIDLFLAGIGTDGHIAFNEPG 150 (253)
T ss_pred CcEEecCCCCchHHHHHHHHHHHhccCCCCHhhEEcCCCCCcCHHHHHHHHHHHHHHhCCCcEEEeCCCCCCceeecCCC
Confidence 69999999999999999999999999999999999999877789999999999999999999999999999999999999
Q ss_pred CCCCCCCeec
Q psy706 81 SRKISRNTDV 90 (91)
Q Consensus 81 ~~~~~~~~~v 90 (91)
+++.+.+|+|
T Consensus 151 ~~~~~~~~~v 160 (253)
T PTZ00285 151 SSLDSRTRVK 160 (253)
T ss_pred CccCCceEEE
Confidence 9887777764
No 2
>KOG3148|consensus
Probab=100.00 E-value=1.1e-33 Score=193.82 Aligned_cols=90 Identities=58% Similarity=0.955 Sum_probs=88.3
Q ss_pred CcccccCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCCCccccCCCC
Q psy706 1 MAKAKALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLIGQIRSYNSE 80 (91)
Q Consensus 1 ~dEy~~v~~~~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dGH~As~~Pg 80 (91)
||||+|+|.+|++|++++|.++||.|++|.|+|+|++++.+.|..++|++||.+|++.||+|+.+-|+|+|||||||+||
T Consensus 71 mdeyvglprdh~esyhsfmwnnffkhidi~p~n~hildgna~dl~aec~~fe~kikeaggidlfvggigpdghiafnepg 150 (273)
T KOG3148|consen 71 MDEYVGLPRDHPESYHSFMWNNFFKHIDINPANIHILDGNAADLQAECDAFERKIKEAGGIDLFVGGIGPDGHIAFNEPG 150 (273)
T ss_pred chhhcCCCCCChhHHHHHHHHhhhhhcccCcccceeecCchHHHHHHHHHHHHHHHhcCCeEEEeeccCCCCceeeCCCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeec
Q psy706 81 SRKISRNTDV 90 (91)
Q Consensus 81 ~~~~~~~~~v 90 (91)
|++.|+||+.
T Consensus 151 sslvsrtrvk 160 (273)
T KOG3148|consen 151 SSLVSRTRVK 160 (273)
T ss_pred chhhhhhhHH
Confidence 9999999975
No 3
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=99.97 E-value=6.7e-32 Score=189.16 Aligned_cols=88 Identities=14% Similarity=0.215 Sum_probs=80.6
Q ss_pred CcccccCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCCCccccCCCC
Q psy706 1 MAKAKALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLIGQIRSYNSE 80 (91)
Q Consensus 1 ~dEy~~v~~~~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dGH~As~~Pg 80 (91)
+|||++||++|++||++++|++||++++++++|+|.+++...+ +++|++|+++|++.++||++|||||+||||||||||
T Consensus 66 ~DE~v~vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~~~~-~~~~~~y~~~i~~~~~~Dl~lLGmG~DGH~A~n~P~ 144 (232)
T PRK09762 66 LDEWVDLPLTMPGTCETFLQQHIVQPLGLREDQLISFRSEEIN-ETECERVTNLIARKGGLDLCVLGLGKNGHLGLNEPG 144 (232)
T ss_pred CcEEecCCCCccHHHHHHHHHHhcCCCCCCHHHEECCCCCccc-HHHHHHHHHHHHhcCCCCEEEEccCCCCceecCCCC
Confidence 6999889999999999999999999999999999999876544 889999999999999999999999999999999999
Q ss_pred CCCCCCCee
Q psy706 81 SRKISRNTD 89 (91)
Q Consensus 81 ~~~~~~~~~ 89 (91)
+++...++.
T Consensus 145 ~slfp~~~~ 153 (232)
T PRK09762 145 ESLQPACHI 153 (232)
T ss_pred CCCCCCcee
Confidence 887766553
No 4
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=99.97 E-value=2e-31 Score=185.15 Aligned_cols=87 Identities=18% Similarity=0.244 Sum_probs=79.3
Q ss_pred CcccccCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhh----cCCccEEEEcccCCCcccc
Q psy706 1 MAKAKALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKE----AGGIHLFVGGEVLIGQIRS 76 (91)
Q Consensus 1 ~dEy~~v~~~~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~----~~~~Dl~lLG~G~dGH~As 76 (91)
+|||+ ||.+|++||++++|++||++++++++|+|.+++.. +++++|++|+++|++ .++||++|||||+||||||
T Consensus 58 ~DEr~-Vp~~~~~Sn~~~~~~~ll~~~~~~~~~v~~~~~~~-~~~~~a~~y~~~i~~~~~~~~~~Dl~lLGmG~DGH~AS 135 (219)
T cd01400 58 GDERC-VPPDDPDSNYRLAREALLSHVAIPAANIHPIPTEL-GPEDAAAAYEKELRALFGGVPPFDLVLLGMGPDGHTAS 135 (219)
T ss_pred eeccc-cCCCCcccHHHHHHHHhhccCCCCHhhEEeCCCCC-CHHHHHHHHHHHHHHHhcCCCCCCEEEECCcCCCceee
Confidence 59999 99999999999999999999999999999998765 499999999999998 5899999999999999999
Q ss_pred CCCCCCCC--CCCee
Q psy706 77 YNSESRKI--SRNTD 89 (91)
Q Consensus 77 ~~Pg~~~~--~~~~~ 89 (91)
||||+++. +.+++
T Consensus 136 lfP~~~~~~~~~~~~ 150 (219)
T cd01400 136 LFPGHPALLEETDRL 150 (219)
T ss_pred cCCCCcccccccCce
Confidence 99998765 55543
No 5
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=99.97 E-value=3e-31 Score=187.99 Aligned_cols=90 Identities=50% Similarity=0.828 Sum_probs=84.2
Q ss_pred CcccccCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCCCccccCCCC
Q psy706 1 MAKAKALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLIGQIRSYNSE 80 (91)
Q Consensus 1 ~dEy~~v~~~~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dGH~As~~Pg 80 (91)
+|||++||.+|++||+++||++||++++++++|+|.+++...+++++|++|++.|++.++||++|||||+|||||||||+
T Consensus 71 ~DEr~~vp~~~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~a~~y~~~i~~~~~~Dl~llG~G~DGH~As~fP~ 150 (259)
T TIGR00502 71 MDEYAGLSEEHPESYHSFMHNNFFQHIDIKPENINILNGNAPDLEAECRRYEEKIRSYGGIDLFMGGIGPDGHIAFNEPG 150 (259)
T ss_pred CeecCCCCCCchHHHHHHHHHHhcccCCCCHHHEecCCCCccCHHHHHHHHHHHHHHcCCCCEEEEccCCCCceecCCCC
Confidence 69999999999999999999999999999999999999877789999999999999999999999999999999999999
Q ss_pred CCCCCCCeec
Q psy706 81 SRKISRNTDV 90 (91)
Q Consensus 81 ~~~~~~~~~v 90 (91)
+++.+.++++
T Consensus 151 ~~~~~~~~~~ 160 (259)
T TIGR00502 151 SSLTSRTRIK 160 (259)
T ss_pred CCCCCceEEE
Confidence 8877766654
No 6
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=99.97 E-value=2.3e-31 Score=182.62 Aligned_cols=82 Identities=27% Similarity=0.440 Sum_probs=74.3
Q ss_pred CcccccCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhhcCC------ccEEEEcccCCCcc
Q psy706 1 MAKAKALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGG------IHLFVGGEVLIGQI 74 (91)
Q Consensus 1 ~dEy~~v~~~~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~------~Dl~lLG~G~dGH~ 74 (91)
+|||+ ||.+|++||+++|+++||++++|+++|+|.+++...+++++|++|+++|++.++ ||++|||||+||||
T Consensus 58 ~DEr~-v~~~~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~p~~Dl~lLG~G~DGH~ 136 (199)
T PF01182_consen 58 VDERV-VPPDDPDSNYRMLREHLLDPLPIPPENIHPIDGEADDPEEAAERYEQELASLGGEAGFPGFDLVLLGMGEDGHT 136 (199)
T ss_dssp SEEES-STTTSTTSHHHHHHHHTGGGSGGGGGGEETSSTTTSSHHHHHHHHHHHHHHHSSSEECESBSEEEEE--TTS-B
T ss_pred Ccccc-cCCCCCccHHHHHHHHhhccCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHhccccCCCceeEEEeccccCCCe
Confidence 69999 999999999999999999999999999999998788999999999999999865 99999999999999
Q ss_pred ccCCCCCCC
Q psy706 75 RSYNSESRK 83 (91)
Q Consensus 75 As~~Pg~~~ 83 (91)
||||||++.
T Consensus 137 aslfPg~~~ 145 (199)
T PF01182_consen 137 ASLFPGSPA 145 (199)
T ss_dssp TTB-TTCHT
T ss_pred eccCCCCcc
Confidence 999999876
No 7
>PLN02360 probable 6-phosphogluconolactonase
Probab=99.97 E-value=1.4e-30 Score=185.77 Aligned_cols=85 Identities=14% Similarity=0.220 Sum_probs=76.3
Q ss_pred CcccccCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhh--------------cCCccEEEE
Q psy706 1 MAKAKALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKE--------------AGGIHLFVG 66 (91)
Q Consensus 1 ~dEy~~v~~~~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~--------------~~~~Dl~lL 66 (91)
+|||| ||.+|++||++++|++||++++|+++|+|.+++.. +++++|++|+++|++ .++||++||
T Consensus 79 ~DER~-Vp~~~~~SN~~~~r~~Ll~~~~i~~~~i~~~~~~~-~~~~~a~~ye~~l~~~~~~~~~~~~~~~~~p~fDlvlL 156 (268)
T PLN02360 79 ADERV-VAKNHADSNYKLAKDGLLSKVPVVPSHVYSINDTV-TAEEAATDYEFAIRQLVKTRTIGVSDISDCPKFDLILL 156 (268)
T ss_pred eeccc-CCCCCcchHHHHHHHHhhccCCCChhhcccCCCCC-CHHHHHHHHHHHHHHHhhccccccccccCCCcccEEEE
Confidence 59999 99999999999999999999999999999998765 589999999999976 357999999
Q ss_pred cccCCCccccCCCCCC-CCCCC
Q psy706 67 GEVLIGQIRSYNSESR-KISRN 87 (91)
Q Consensus 67 G~G~dGH~As~~Pg~~-~~~~~ 87 (91)
|||+||||||||||++ +....
T Consensus 157 GmG~DGHtASlFPg~~~l~~~~ 178 (268)
T PLN02360 157 GMGSDGHVASLFPNHPALEEKD 178 (268)
T ss_pred ccCCCCceeccCCCCchhhhcc
Confidence 9999999999999976 44443
No 8
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=99.97 E-value=1.5e-30 Score=182.34 Aligned_cols=88 Identities=17% Similarity=0.207 Sum_probs=78.3
Q ss_pred CcccccCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhhcCC------ccEEEEcccCCCcc
Q psy706 1 MAKAKALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGG------IHLFVGGEVLIGQI 74 (91)
Q Consensus 1 ~dEy~~v~~~~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~------~Dl~lLG~G~dGH~ 74 (91)
+|||| ||++|++||++++|++||++++++++|+|.+++...+++++|++|+++|++.++ ||++|||||+||||
T Consensus 62 ~DER~-Vp~~~~~SN~~~~~~~Ll~~~~i~~~~i~~~~~~~~~~~~~a~~y~~~i~~~~~~~~~p~fDl~lLGmG~DGHt 140 (233)
T TIGR01198 62 GDERY-VPLDHADSNTGLAREALLDRVAIPASNIHPMPTELSDIEEAAELYEQELAAAFQPIVFPVFDLLLLGMGPDGHT 140 (233)
T ss_pred ecccc-cCCCCccchHHHHHHHHhccCCCChhheeeCCCccCCHHHHHHHHHHHHHHhhcccCCCcccEEEECCcCCccc
Confidence 59999 999999999999999999999999999999987655799999999999988743 79999999999999
Q ss_pred ccCCCCCCC-CCCCee
Q psy706 75 RSYNSESRK-ISRNTD 89 (91)
Q Consensus 75 As~~Pg~~~-~~~~~~ 89 (91)
||||||++. ...+++
T Consensus 141 ASlFPg~~~l~~~~~~ 156 (233)
T TIGR01198 141 ASLFPHTPALQETERL 156 (233)
T ss_pred eeCCCCChhhccccce
Confidence 999999764 454443
No 9
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=99.96 E-value=4.5e-30 Score=200.72 Aligned_cols=90 Identities=36% Similarity=0.574 Sum_probs=84.8
Q ss_pred CcccccCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCC--CcCHHHHHHHHHHHHhhcCCccEEEEcccCCCccccCC
Q psy706 1 MAKAKALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGN--APDLHAECVQYEKDIKEAGGIHLFVGGEVLIGQIRSYN 78 (91)
Q Consensus 1 ~dEy~~v~~~~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~--~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dGH~As~~ 78 (91)
+|||++||++|++||+++|+++||++++|+++|+|.+++. ..+++++|++|+++|++.|+||++|||||+||||||||
T Consensus 97 ~DEr~~vp~d~~~Sn~~~~re~L~~~i~Ip~~ni~~~dg~~~~~~~~~~~~~Ye~~I~~~gg~DlvLLGiG~DGHiAsnf 176 (652)
T PRK02122 97 LDEYYPMQPDSLQSYHRFMKENLFDHVDIPPENIHIPDGTIPKEEIDEYCRDYEEKIEAAGGIDFQLLGIGRTGHIGFNE 176 (652)
T ss_pred CeeccCCCCCcHHHHHHHHHHHhhccCCCCHHHeecCCCccCcCCHHHHHHHHHHHHHhhCCCcEEEeCCCCCCceeccC
Confidence 6999999999999999999999999999999999999875 35789999999999999999999999999999999999
Q ss_pred CCCCCCCCCeec
Q psy706 79 SESRKISRNTDV 90 (91)
Q Consensus 79 Pg~~~~~~~~~v 90 (91)
||+++.+.+|+|
T Consensus 177 Pgs~~~s~tr~v 188 (652)
T PRK02122 177 PGSGRNSRTRLV 188 (652)
T ss_pred CCCcccccceEE
Confidence 999988888875
No 10
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3.4e-29 Score=176.42 Aligned_cols=82 Identities=37% Similarity=0.488 Sum_probs=73.4
Q ss_pred CcccccCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHH-HHHHHHhhcCCccEEEEcccCCCccccCCC
Q psy706 1 MAKAKALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECV-QYEKDIKEAGGIHLFVGGEVLIGQIRSYNS 79 (91)
Q Consensus 1 ~dEy~~v~~~~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~-~y~~~i~~~~~~Dl~lLG~G~dGH~As~~P 79 (91)
+|||++ |++|++||+++||++||+++.++++++|.++.. +++++|+ +|+++|.+.++||++|||||+|||||||||
T Consensus 69 ~DEr~v-p~~~~~Sn~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~e~~~~ye~~i~~~~~~Dl~lLG~G~DGHias~fP 145 (238)
T COG0363 69 LDERVV-PPDDPESNYGLMRRNLFDHIDIPAEFIHNGDAS--DPDAECAARYEAKLPSAGGFDLILLGMGEDGHIASLFP 145 (238)
T ss_pred cccccc-CCCCchhHHHHHHHHHhccccCcHhhcCCCCcc--ChhHHHHHHHHhhccccCCCCEEEEcccCCCcccccCC
Confidence 699995 999999999999999999999999996666554 4555777 999999999999999999999999999999
Q ss_pred CCC-CCC
Q psy706 80 ESR-KIS 85 (91)
Q Consensus 80 g~~-~~~ 85 (91)
|++ +.+
T Consensus 146 ~~~~l~~ 152 (238)
T COG0363 146 GTPALDS 152 (238)
T ss_pred CCccccc
Confidence 988 654
No 11
>KOG3147|consensus
Probab=99.93 E-value=4.1e-26 Score=160.31 Aligned_cols=89 Identities=21% Similarity=0.221 Sum_probs=78.0
Q ss_pred CcccccCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCC-cCHHHHHHHHHHHHhhc-CC-----ccEEEEcccCCCc
Q psy706 1 MAKAKALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNA-PDLHAECVQYEKDIKEA-GG-----IHLFVGGEVLIGQ 73 (91)
Q Consensus 1 ~dEy~~v~~~~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~-~~~~~~~~~y~~~i~~~-~~-----~Dl~lLG~G~dGH 73 (91)
.|||+ ||.+|++||++..+++||++++++..|++.+|... .+++++++.|+++|++. .+ |||+|||||+|||
T Consensus 77 ~DER~-Vp~~~~dSNyg~~~~~~l~~v~~~~~~i~~id~~L~~~~~~~a~~ye~~l~~~v~~~s~p~FDL~LLG~GpDGH 155 (252)
T KOG3147|consen 77 VDERV-VPLDDPDSNYGLAKRHFLSKVPIPHYNIYPIDESLIADAEEAADLYEKELKALVANDSFPVFDLLLLGMGPDGH 155 (252)
T ss_pred Eeccc-cCCCCCcccHHHHHHhhhhhCCCCcCcEEECChhhccCHHHHHHHHHHHHHHHhccCCCcceeEEEeccCCCCC
Confidence 38999 99999999999999999999999999999998774 37999999999999764 34 9999999999999
Q ss_pred cccCCCCCC-CCCCCeec
Q psy706 74 IRSYNSESR-KISRNTDV 90 (91)
Q Consensus 74 ~As~~Pg~~-~~~~~~~v 90 (91)
|||+|||+. .....++|
T Consensus 156 taSLFP~~~~l~e~~~wV 173 (252)
T KOG3147|consen 156 TASLFPGHPLLNEKLKWV 173 (252)
T ss_pred eeecCCCchhhhcccCEE
Confidence 999999954 45555554
No 12
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=99.92 E-value=2.8e-25 Score=156.08 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=71.0
Q ss_pred CcccccC-CCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCCCccccCCC
Q psy706 1 MAKAKAL-PRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLIGQIRSYNS 79 (91)
Q Consensus 1 ~dEy~~v-~~~~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dGH~As~~P 79 (91)
+|| |+. ..++.+||+.++|++||++++|+++|+|.+++ ++|++|+++|++.++||++|||||+|||||||||
T Consensus 65 ~DE-v~~~~~~~~~s~~~~~~~~l~~~~~i~~~~~~~~~~------~~~~~y~~~i~~~~~~Dl~lLG~G~DGH~As~fP 137 (239)
T PRK12358 65 FDE-IPFRGKEGEGVTITNLRNLFFTPAGIKEENIHKLTI------DNYREHDQKLARDGGLDLVVLGLGADGHFCGNLP 137 (239)
T ss_pred ccc-cCCCCccccccHHHHHHHHhcCcCCCCHHHeeCCCH------HHHHHHHHHHHhcCCCCEEEEccCCCCceeecCC
Confidence 589 432 22556689999999999999999999999984 3689999999999999999999999999999999
Q ss_pred CC-CCCCCCeec
Q psy706 80 ES-RKISRNTDV 90 (91)
Q Consensus 80 g~-~~~~~~~~v 90 (91)
|+ .+.+.+|+|
T Consensus 138 g~~~~~~~~~~v 149 (239)
T PRK12358 138 GTTHFHDETVEV 149 (239)
T ss_pred CCCcCCCceEEE
Confidence 96 467777765
No 13
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=99.89 E-value=3.3e-23 Score=146.05 Aligned_cols=89 Identities=48% Similarity=0.781 Sum_probs=80.9
Q ss_pred CcccccCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCCCccccCCCC
Q psy706 1 MAKAKALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLIGQIRSYNSE 80 (91)
Q Consensus 1 ~dEy~~v~~~~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dGH~As~~Pg 80 (91)
+|||+|||.+|++||+.++++.|+++++++..++|.+++...++..+++.|++.|+..+++|++|||||+|||+|||||+
T Consensus 71 ~DEr~gv~~~~~~s~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Dl~llGiG~dgh~aslfp~ 150 (261)
T PRK00443 71 LDEYVGLPADHPESYRYFMRENFFDHVDIPPENINLLNGNAPDPEAECRRYEEKIKSAGGIDLQILGIGENGHIAFNEPG 150 (261)
T ss_pred CceecCCCCCChHHHHHHHHHHHhccCCCCHHHeecCCCCCcCHHHHHHHHHHHHHHcCCCCEEEEccCCCCcccccCCC
Confidence 69999999999999999999999999999999999997766688999999999999999999999999999999999999
Q ss_pred CCCCCCCee
Q psy706 81 SRKISRNTD 89 (91)
Q Consensus 81 ~~~~~~~~~ 89 (91)
+.+.+.+++
T Consensus 151 ~~~~~~~~~ 159 (261)
T PRK00443 151 SSFASRTRI 159 (261)
T ss_pred CCCCCCeEE
Confidence 876544443
No 14
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=99.89 E-value=5e-23 Score=142.45 Aligned_cols=88 Identities=51% Similarity=0.775 Sum_probs=80.3
Q ss_pred CcccccCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCCCccccCCCC
Q psy706 1 MAKAKALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLIGQIRSYNSE 80 (91)
Q Consensus 1 ~dEy~~v~~~~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dGH~As~~Pg 80 (91)
+|||++|+.+|++||..++++.|+++++++..++|.+++...++.++++.|++.|++.+++|++|||||+|||+|||||+
T Consensus 57 ~der~~v~~~~~~sn~~~~~~~l~~~~~~~~~~i~~p~~~~~~~~~~~~~~~~~l~~~~~~Dl~llGiG~dgh~as~~p~ 136 (232)
T cd01399 57 LDEYVGLPPDHPQSYHYFMRENLFDHIDIKPENIHIPDGNAADLEAECRRYEALIAEAGGIDLQLLGIGENGHIGFNEPG 136 (232)
T ss_pred CceecCCCCCcchhHHHHHHHHhhccCCCCHHHEecCCCCccCHHHHHHHHHHHHHHcCCCCEEEECCCCCceeeecCCC
Confidence 69999999999999999999999999999989999998766678999999999999999999999999999999999999
Q ss_pred CCCCCCCe
Q psy706 81 SRKISRNT 88 (91)
Q Consensus 81 ~~~~~~~~ 88 (91)
+.+.+.++
T Consensus 137 ~~~~~~~~ 144 (232)
T cd01399 137 SSLDSRTR 144 (232)
T ss_pred CCCCCceE
Confidence 87654444
No 15
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=99.75 E-value=3e-18 Score=115.06 Aligned_cols=68 Identities=24% Similarity=0.158 Sum_probs=58.7
Q ss_pred CcccccCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEccc
Q psy706 1 MAKAKALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEV 69 (91)
Q Consensus 1 ~dEy~~v~~~~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G 69 (91)
+|||| ||.+|++||++++|++|+++++++++++|++++...+.+++|+.++++++..++||++|||||
T Consensus 56 ~DEr~-v~~~~~~Sn~~~~~~~ll~~~~i~~~~v~~~~~~~~~~~~a~~y~~~~~~~~~~~Dl~lLG~G 123 (169)
T cd00458 56 TDERY-VPLDSDQSNFRQAKLLAFEHDIIPASNVHYVDTSLPIEKACEKYEREILDQVDAIDLAVDGAG 123 (169)
T ss_pred Ccccc-CCCCCchHHHHHHHHHhhccCCCCHHHeecCCCCCCcHHHHHHHHHHHHhhCCCCCEEEECcC
Confidence 59999 788999999999999999999999999999998765555555555556677789999999999
No 16
>COG3150 Predicted esterase [General function prediction only]
Probab=79.10 E-value=11 Score=26.02 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=47.4
Q ss_pred ChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCCCccc
Q psy706 11 HPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLIGQIR 75 (91)
Q Consensus 11 ~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dGH~A 75 (91)
+|.|..+.+...|+++. .+..+.-.+.. ..+|..+++..++.|.+.+.-+..|.|.|--|=.|
T Consensus 11 SP~shka~l~~q~~~~~-~~~i~y~~p~l-~h~p~~a~~ele~~i~~~~~~~p~ivGssLGGY~A 73 (191)
T COG3150 11 SPGSHKAVLLLQFIDED-VRDIEYSTPHL-PHDPQQALKELEKAVQELGDESPLIVGSSLGGYYA 73 (191)
T ss_pred CcccHHHHHHHHHHhcc-ccceeeecCCC-CCCHHHHHHHHHHHHHHcCCCCceEEeecchHHHH
Confidence 88999999999999874 22333333322 24799999999999999987779999998877443
No 17
>PRK13456 DNA protection protein DPS; Provisional
Probab=76.73 E-value=0.89 Score=31.37 Aligned_cols=39 Identities=15% Similarity=0.059 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhcCCccEE---------------------EEcccCCCccccCCCCC-CCCC
Q psy706 47 ECVQYEKDIKEAGGIHLF---------------------VGGEVLIGQIRSYNSES-RKIS 85 (91)
Q Consensus 47 ~~~~y~~~i~~~~~~Dl~---------------------lLG~G~dGH~As~~Pg~-~~~~ 85 (91)
+.+.|.+.|+..++.|-+ +|+-||.||+--.+||. |+.+
T Consensus 122 AI~~Y~eii~~~~~kDp~T~~l~~~IL~dE~eH~~dl~~lL~~~~~~~~~~~~~~~~~~~~ 182 (186)
T PRK13456 122 AIRTYTEICDMTAGKDPRTYDLALAILQEEIEHEAWFSELLGGGPSGHFRRSYPGESPFVS 182 (186)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceecCCCCCCcchh
Confidence 347888888776644433 38999999999999995 4544
No 18
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=68.16 E-value=3.5 Score=17.61 Aligned_cols=12 Identities=17% Similarity=-0.133 Sum_probs=9.4
Q ss_pred ccCCCccccCCC
Q psy706 68 EVLIGQIRSYNS 79 (91)
Q Consensus 68 ~G~dGH~As~~P 79 (91)
-|..||++..-|
T Consensus 6 C~~~GH~~~~Cp 17 (18)
T PF00098_consen 6 CGEPGHIARDCP 17 (18)
T ss_dssp TSCSSSCGCTSS
T ss_pred CCCcCcccccCc
Confidence 377899998766
No 19
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=64.42 E-value=11 Score=25.10 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhcCCccEEEEcccC
Q psy706 47 ECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 47 ~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
+.+..-+.|++. +.|++++|||.
T Consensus 89 ~~~~i~~~I~~~-~pdiv~vglG~ 111 (172)
T PF03808_consen 89 EEEAIINRINAS-GPDIVFVGLGA 111 (172)
T ss_pred hHHHHHHHHHHc-CCCEEEEECCC
Confidence 345556666665 56999999996
No 20
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=62.92 E-value=12 Score=25.21 Aligned_cols=21 Identities=14% Similarity=0.025 Sum_probs=16.5
Q ss_pred HHHHHHHhhcCCccEEEEcccC
Q psy706 49 VQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 49 ~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
+...+.|++. +.|++++|||.
T Consensus 90 ~~i~~~I~~s-~~dil~VglG~ 110 (177)
T TIGR00696 90 KAALAKIARS-GAGIVFVGLGC 110 (177)
T ss_pred HHHHHHHHHc-CCCEEEEEcCC
Confidence 4567777776 57999999996
No 21
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=58.02 E-value=43 Score=22.72 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=39.6
Q ss_pred ChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCCCccc
Q psy706 11 HPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLIGQIR 75 (91)
Q Consensus 11 ~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dGH~A 75 (91)
+|+|..+..-+.++.... +.-++..++-. ..|.++.+..+++|++..+-.++|+|-.-=|-.|
T Consensus 11 sp~S~Ka~~l~~~~~~~~-~~~~~~~p~l~-~~p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A 73 (187)
T PF05728_consen 11 SPQSFKAQALKQYFAEHG-PDIQYPCPDLP-PFPEEAIAQLEQLIEELKPENVVLIGSSLGGFYA 73 (187)
T ss_pred CCCCHHHHHHHHHHHHhC-CCceEECCCCC-cCHHHHHHHHHHHHHhCCCCCeEEEEEChHHHHH
Confidence 556665544444444321 22344445433 4688889999999998865558888876666555
No 22
>KOG1205|consensus
Probab=57.84 E-value=32 Score=25.17 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=30.2
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
+++....+-.+.++..+..++.++.+|++|+++--=|-
T Consensus 64 ~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNNAG~ 101 (282)
T KOG1205|consen 64 KVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNNAGI 101 (282)
T ss_pred ccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 67777777777888888888888999999999864443
No 23
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=57.67 E-value=17 Score=24.17 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=15.0
Q ss_pred HHHHHhhcCCccEEEEcccC
Q psy706 51 YEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 51 y~~~i~~~~~~Dl~lLG~G~ 70 (91)
..+.|++. +.|++++|||.
T Consensus 91 i~~~I~~~-~pdiv~vglG~ 109 (171)
T cd06533 91 IIERINAS-GADILFVGLGA 109 (171)
T ss_pred HHHHHHHc-CCCEEEEECCC
Confidence 56667666 57999999996
No 24
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=57.29 E-value=17 Score=25.85 Aligned_cols=22 Identities=9% Similarity=-0.029 Sum_probs=16.5
Q ss_pred HHHHHHHHhhcCCccEEEEcccC
Q psy706 48 CVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 48 ~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
.+...+.|... +.|++++|||.
T Consensus 146 ~~~i~~~I~~s-~~dil~VglG~ 167 (243)
T PRK03692 146 RQALFERIHAS-GAKIVTVAMGS 167 (243)
T ss_pred HHHHHHHHHhc-CCCEEEEECCC
Confidence 34566677666 57999999995
No 25
>KOG1800|consensus
Probab=55.31 E-value=24 Score=27.51 Aligned_cols=23 Identities=13% Similarity=-0.145 Sum_probs=21.1
Q ss_pred CccEEEEcccCCCccccCCCCCC
Q psy706 60 GIHLFVGGEVLIGQIRSYNSESR 82 (91)
Q Consensus 60 ~~Dl~lLG~G~dGH~As~~Pg~~ 82 (91)
.+|.++|--|.+|+=.-.-||..
T Consensus 108 ~ydavvLaYGa~~dR~L~IPGe~ 130 (468)
T KOG1800|consen 108 NYDAVVLAYGADGDRRLDIPGEE 130 (468)
T ss_pred cccEEEEEecCCCCcccCCCCcc
Confidence 58999999999999999999964
No 26
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=54.00 E-value=16 Score=22.52 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=16.8
Q ss_pred HHHHHHHhhcCCccEEEEcccCC
Q psy706 49 VQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 49 ~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
+..+..+...+.+|++++|.|..
T Consensus 42 ~~l~~l~~~~p~pe~liiGtG~~ 64 (110)
T PF04430_consen 42 EDLEELLELEPKPEVLIIGTGKR 64 (110)
T ss_dssp HHHHHHHCTCCS-SEEEEEETTS
T ss_pred HHHHHHHhccCCCcEEEEccCCc
Confidence 34555566667899999999987
No 27
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=53.54 E-value=24 Score=26.19 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=15.4
Q ss_pred EeCCCCC-cCHHHHHHHHHHHHhhc
Q psy706 35 HILDGNA-PDLHAECVQYEKDIKEA 58 (91)
Q Consensus 35 ~~~~~~~-~~~~~~~~~y~~~i~~~ 58 (91)
+.+.+.. .-|+.++-.|.++|++.
T Consensus 99 YtPGG~~g~RPDRAtiVY~n~ir~~ 123 (302)
T PF08497_consen 99 YTPGGKAGRRPDRATIVYTNLIREA 123 (302)
T ss_pred CCCCCCCCCCCCchhhHHHHHHHHH
Confidence 4454443 34677778888888774
No 28
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=53.32 E-value=23 Score=21.89 Aligned_cols=22 Identities=9% Similarity=-0.121 Sum_probs=16.0
Q ss_pred HHHHHhhcCCccEEEEcccCCCc
Q psy706 51 YEKDIKEAGGIHLFVGGEVLIGQ 73 (91)
Q Consensus 51 y~~~i~~~~~~Dl~lLG~G~dGH 73 (91)
.+..+... .+|++++|.|..++
T Consensus 44 l~~~~~~~-~peiliiGTG~~~~ 65 (109)
T cd00248 44 LLPLLAED-RPDILLIGTGAEIA 65 (109)
T ss_pred HHHHHhhC-CCCEEEEcCCCCCC
Confidence 44444433 58999999999885
No 29
>KOG0452|consensus
Probab=49.99 E-value=35 Score=28.08 Aligned_cols=39 Identities=28% Similarity=0.583 Sum_probs=30.0
Q ss_pred HHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEE
Q psy706 21 HNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVG 66 (91)
Q Consensus 21 ~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lL 66 (91)
+.|+.++ .|..+|++-++.-|.-++|++|.+. +++++||
T Consensus 734 Nkl~~k~--gP~TvHiPsge~ldvFdAA~~Y~~~-----g~p~iil 772 (892)
T KOG0452|consen 734 NKLLSKV--GPKTVHIPSGEELDVFDAAERYKSE-----GIPLIIL 772 (892)
T ss_pred HHHhccc--CCceEecCCCCeecHhhHHHHHHhc-----CCceEEE
Confidence 3445544 5789999999888888899999776 6778776
No 30
>KOG3716|consensus
Probab=49.46 E-value=1.1e+02 Score=25.43 Aligned_cols=72 Identities=19% Similarity=0.126 Sum_probs=40.7
Q ss_pred ccccCCCCChhhHHHHHHHHhcCCC-----CCCCCCeEe-CCCC----CcCHHHHHHHHHHHHhhcCCccEEEEcccCCC
Q psy706 3 KAKALPRDHPESYHYYMWHNFFSHI-----DIQPENVHI-LDGN----APDLHAECVQYEKDIKEAGGIHLFVGGEVLIG 72 (91)
Q Consensus 3 Ey~~v~~~~~~Sn~~~l~~~ll~~~-----~i~~~~~~~-~~~~----~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dG 72 (91)
|+++.+.+ |++-..+++..|-... +. .-|... -++. ++.--.-|+.+...-+-.-..|.+.||-++||
T Consensus 416 ~~~~~~~d-~~~l~~y~k~lLhG~g~nRWfDK-sf~~iv~kNGr~G~n~EHSwaDaai~~H~~E~~l~~D~~~lgy~~~g 493 (764)
T KOG3716|consen 416 ERWGDEED-PESLSNYAKNLLHGDGYNRWFDK-SFNYIVSKNGRVGLNAEHSWADAAIMDHLWENVLYVDKFVLGYPEDG 493 (764)
T ss_pred cccCCcCC-HHHHHHHHHHHhcCCCccceecc-ceeEEEecCCccccccccCchhhHHHHHHHHHHHhhceeeecCCCCc
Confidence 37777777 8998889887664332 11 122222 2332 11111123334444443346799999999999
Q ss_pred cccc
Q psy706 73 QIRS 76 (91)
Q Consensus 73 H~As 76 (91)
|.-.
T Consensus 494 ~c~g 497 (764)
T KOG3716|consen 494 HCKG 497 (764)
T ss_pred cccC
Confidence 9754
No 31
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=49.25 E-value=36 Score=24.44 Aligned_cols=56 Identities=11% Similarity=0.000 Sum_probs=35.8
Q ss_pred HHHHHHhcCCCCCCCCCeEeCCCC--CcCHHHHHHHHHHHHhhcCCccEEEEcccC-CCcccc
Q psy706 17 YYMWHNFFSHIDIQPENVHILDGN--APDLHAECVQYEKDIKEAGGIHLFVGGEVL-IGQIRS 76 (91)
Q Consensus 17 ~~l~~~ll~~~~i~~~~~~~~~~~--~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~-dGH~As 76 (91)
..+|+.|--.. .+.++.-+.. ..|+..-+....+.|++. ++||+|.|... ||-++-
T Consensus 71 ~~lr~aLAmGa---D~avli~d~~~~g~D~~~tA~~La~ai~~~-~~DLVl~G~~s~D~~tgq 129 (256)
T PRK03359 71 KGRKDVLSRGP---DELIVVIDDQFEQALPQQTASALAAAAQKA-GFDLILCGDGSSDLYAQQ 129 (256)
T ss_pred HHHHHHHHcCC---CEEEEEecCcccCcCHHHHHHHHHHHHHHh-CCCEEEEcCccccCCCCc
Confidence 45666654332 2344444331 247777788888888876 59999999877 665543
No 32
>KOG3363|consensus
Probab=47.38 E-value=15 Score=25.23 Aligned_cols=18 Identities=17% Similarity=-0.007 Sum_probs=15.2
Q ss_pred CccEEEEcccCCCccccC
Q psy706 60 GIHLFVGGEVLIGQIRSY 77 (91)
Q Consensus 60 ~~Dl~lLG~G~dGH~As~ 77 (91)
-+|++|+|+|.+-|.--.
T Consensus 111 kidlLIvG~Gd~~~p~~v 128 (196)
T KOG3363|consen 111 KIDLLIVGCGDKKHPDKV 128 (196)
T ss_pred CccEEEEecCCcCCchhc
Confidence 589999999999997433
No 33
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=47.22 E-value=28 Score=25.13 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=15.4
Q ss_pred HHHHHHHhhcCCccEEEEcccC
Q psy706 49 VQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 49 ~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
++--+.|+.. +.|+++.|||.
T Consensus 151 ~~i~~~I~~s-~pdil~VgmG~ 171 (253)
T COG1922 151 EAIVERIAAS-GPDILLVGMGV 171 (253)
T ss_pred HHHHHHHHhc-CCCEEEEeCCC
Confidence 4555566555 57999999996
No 34
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=46.97 E-value=23 Score=22.47 Aligned_cols=39 Identities=26% Similarity=0.462 Sum_probs=26.9
Q ss_pred HHhcCCCCCCCCCeEeCCCCCc---CHHHHHHHHHHHHhhcC
Q psy706 21 HNFFSHIDIQPENVHILDGNAP---DLHAECVQYEKDIKEAG 59 (91)
Q Consensus 21 ~~ll~~~~i~~~~~~~~~~~~~---~~~~~~~~y~~~i~~~~ 59 (91)
+.+|+.++|+++++.+..-+.. ...+....+.++|+++|
T Consensus 83 k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~lG 124 (124)
T PF02662_consen 83 KKLLEELGIEPERVRLYWISAPEGKRFAEIVNEFTERIKELG 124 (124)
T ss_pred HHHHHHcCCChhHeEEEEeCcccHHHHHHHHHHHHHHHHHcC
Confidence 4567788999999887554443 34556677777777764
No 35
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=42.80 E-value=76 Score=22.52 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=34.6
Q ss_pred HHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcc
Q psy706 19 MWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGE 68 (91)
Q Consensus 19 l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~ 68 (91)
+.+.|++...-+..+|.++++...++.+.++.|.+.++++|-=.+.+|-+
T Consensus 16 i~~~~~~lag~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i 65 (250)
T TIGR02069 16 ILREFVSRAGGEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDV 65 (250)
T ss_pred HHHHHHHHhCCCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEec
Confidence 67777776655566777776655678888999999998875323444444
No 36
>TIGR00722 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=42.53 E-value=30 Score=25.24 Aligned_cols=18 Identities=11% Similarity=-0.018 Sum_probs=14.0
Q ss_pred ChhhHHHHHHHHhcCCCC
Q psy706 11 HPESYHYYMWHNFFSHID 28 (91)
Q Consensus 11 ~~~Sn~~~l~~~ll~~~~ 28 (91)
+.+....+.|+.++.+++
T Consensus 188 t~d~aa~LaK~Allr~ig 205 (273)
T TIGR00722 188 SFETAAKLAKKALLRPIG 205 (273)
T ss_pred CHHHHHHHHHHHhhhhhc
Confidence 556778899999988764
No 37
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=42.39 E-value=19 Score=22.32 Aligned_cols=15 Identities=7% Similarity=-0.075 Sum_probs=12.8
Q ss_pred CccEEEEcccCCCcc
Q psy706 60 GIHLFVGGEVLIGQI 74 (91)
Q Consensus 60 ~~Dl~lLG~G~dGH~ 74 (91)
.+|++++|.|..++.
T Consensus 52 ~peiliiGTG~~~~~ 66 (109)
T cd05560 52 QPEVILLGTGERQRF 66 (109)
T ss_pred CCCEEEEecCCCCCc
Confidence 369999999998874
No 38
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=42.19 E-value=1e+02 Score=20.38 Aligned_cols=28 Identities=4% Similarity=-0.209 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcccCCCc
Q psy706 45 HAECVQYEKDIKEAGGIHLFVGGEVLIGQ 73 (91)
Q Consensus 45 ~~~~~~y~~~i~~~~~~Dl~lLG~G~dGH 73 (91)
....++.++.+... ..|++++.+|.|.=
T Consensus 57 ~~~~~rl~~~l~~~-~pd~Vii~~GtND~ 84 (191)
T PRK10528 57 QQGLARLPALLKQH-QPRWVLVELGGNDG 84 (191)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEEeccCcC
Confidence 44556666666554 45999999998873
No 39
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=40.17 E-value=55 Score=20.69 Aligned_cols=30 Identities=10% Similarity=-0.169 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcccCCCc
Q psy706 44 LHAECVQYEKDIKEAGGIHLFVGGEVLIGQ 73 (91)
Q Consensus 44 ~~~~~~~y~~~i~~~~~~Dl~lLG~G~dGH 73 (91)
-..+.+.+++.++.....|++++.+|.|+=
T Consensus 34 ~~~~~~~l~~~~~~~~~~d~vvi~lGtNd~ 63 (150)
T cd01840 34 MSEAPDLIRQLKDSGKLRKTVVIGLGTNGP 63 (150)
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEEecCCCC
Confidence 345566666665543457999999999883
No 40
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=39.32 E-value=47 Score=20.96 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=18.1
Q ss_pred HHHHHHHHhhcCCccEEEEcccCCCcc
Q psy706 48 CVQYEKDIKEAGGIHLFVGGEVLIGQI 74 (91)
Q Consensus 48 ~~~y~~~i~~~~~~Dl~lLG~G~dGH~ 74 (91)
.+..+..|+. .++++|+|.|..|..
T Consensus 48 ~~~l~~ll~~--~peivliGTG~~~~~ 72 (117)
T cd05126 48 PEELEELLEE--GVEVIVIGTGQSGAL 72 (117)
T ss_pred HHHHHHHHhc--CCCEEEEcCCCCccc
Confidence 3446666654 478999999998863
No 41
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=39.21 E-value=23 Score=19.21 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=14.8
Q ss_pred HhhcCCccEEEEcccCCCcc
Q psy706 55 IKEAGGIHLFVGGEVLIGQI 74 (91)
Q Consensus 55 i~~~~~~Dl~lLG~G~dGH~ 74 (91)
|..+.+.|++++-.+++|+.
T Consensus 27 Ls~LC~~~v~~iv~~~~g~~ 46 (51)
T PF00319_consen 27 LSTLCGVDVALIVFSPDGKL 46 (51)
T ss_dssp HHHHHT-EEEEEEEETTSEE
T ss_pred eeeecCCeEEEEEECCCCCE
Confidence 33345889999999999986
No 42
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=38.40 E-value=49 Score=20.79 Aligned_cols=21 Identities=10% Similarity=-0.254 Sum_probs=15.2
Q ss_pred HHHHHhhcCCccEEEEcccCC
Q psy706 51 YEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 51 y~~~i~~~~~~Dl~lLG~G~d 71 (91)
.+..+...+.+|++++|.|..
T Consensus 45 l~~l~~~~~~peiliiGtG~~ 65 (114)
T cd05125 45 LSLFELLEPRPEILVIGTGRK 65 (114)
T ss_pred HHHHHhccCCCCEEEEccCCC
Confidence 444444445789999999997
No 43
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=37.53 E-value=28 Score=25.19 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhcCCccEEEEcccCCCcccc
Q psy706 47 ECVQYEKDIKEAGGIHLFVGGEVLIGQIRS 76 (91)
Q Consensus 47 ~~~~y~~~i~~~~~~Dl~lLG~G~dGH~As 76 (91)
-.++|-+.+.++-..|++|.|=||-|-||.
T Consensus 17 I~~~~~~~l~~~~esDViIVGaGPsGLtAA 46 (262)
T COG1635 17 ITERYFEDLLDYLESDVIIVGAGPSGLTAA 46 (262)
T ss_pred HHHHHHHHHHhhhhccEEEECcCcchHHHH
Confidence 357777777777789999999999998884
No 44
>smart00761 HDAC_interact Histone deacetylase (HDAC) interacting. This domain is found on transcriptional regulators. It forms interactions with histone deacetylases.
Probab=36.95 E-value=13 Score=23.27 Aligned_cols=22 Identities=14% Similarity=-0.124 Sum_probs=16.2
Q ss_pred cccccCCCC-ChhhHHHHHHHHh
Q psy706 2 AKAKALPRD-HPESYHYYMWHNF 23 (91)
Q Consensus 2 dEy~~v~~~-~~~Sn~~~l~~~l 23 (91)
|+|+.||.. ..++.+..+|++=
T Consensus 34 D~wvsvps~~SED~~F~~~rKNq 56 (102)
T smart00761 34 DTWVSHPTWASEDSGFVAHRKNQ 56 (102)
T ss_pred CceEeecCCcccccchhhhhccH
Confidence 789999988 6777777666543
No 45
>PRK12342 hypothetical protein; Provisional
Probab=36.83 E-value=77 Score=22.72 Aligned_cols=33 Identities=15% Similarity=0.017 Sum_probs=24.6
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEEEcccC-CCccc
Q psy706 42 PDLHAECVQYEKDIKEAGGIHLFVGGEVL-IGQIR 75 (91)
Q Consensus 42 ~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~-dGH~A 75 (91)
.|+..-+....+.|++. ++||+|.|... ||-++
T Consensus 92 ~D~~ata~~La~~i~~~-~~DLVl~G~~s~D~~tg 125 (254)
T PRK12342 92 ALPLDTAKALAAAIEKI-GFDLLLFGEGSGDLYAQ 125 (254)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEcCCcccCCCC
Confidence 47777778888888876 59999999765 55443
No 46
>PRK08230 tartrate dehydratase subunit alpha; Validated
Probab=36.50 E-value=87 Score=23.25 Aligned_cols=19 Identities=11% Similarity=0.006 Sum_probs=15.5
Q ss_pred CChhhHHHHHHHHhcCCCC
Q psy706 10 DHPESYHYYMWHNFFSHID 28 (91)
Q Consensus 10 ~~~~Sn~~~l~~~ll~~~~ 28 (91)
...+....+.|+.++.+++
T Consensus 197 Gt~d~aa~LaK~Allr~i~ 215 (299)
T PRK08230 197 TSVETAAVLSKKAILRPIG 215 (299)
T ss_pred CCHHHHHHHHHHHhccccc
Confidence 4667788999999998765
No 47
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=36.39 E-value=1.1e+02 Score=24.06 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=15.3
Q ss_pred CccEEEEcccCCCccccCC
Q psy706 60 GIHLFVGGEVLIGQIRSYN 78 (91)
Q Consensus 60 ~~Dl~lLG~G~dGH~As~~ 78 (91)
|.|.+-.|||+ |.+|..-
T Consensus 289 Gad~v~vgig~-gsictt~ 306 (479)
T PRK07807 289 GADIVKVGVGP-GAMCTTR 306 (479)
T ss_pred CCCEEEECccC-Ccccccc
Confidence 79999999999 8887653
No 48
>PRK13784 adenylosuccinate synthetase; Provisional
Probab=35.32 E-value=50 Score=25.72 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHhhcCCccEEEEcccCC
Q psy706 43 DLHAECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 43 ~~~~~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
+.-++|+.|-+.|++.-+.-+.++|+|++
T Consensus 386 ~LP~~a~~Yi~~iE~~~g~pi~~is~Gp~ 414 (428)
T PRK13784 386 NMPAALKTYLKTIENHVGIPISSLAYGPS 414 (428)
T ss_pred HcCHHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 45667999999999888888999999986
No 49
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=35.18 E-value=67 Score=22.51 Aligned_cols=69 Identities=10% Similarity=0.003 Sum_probs=33.9
Q ss_pred CcccccCCCC---------ChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhhcC-----CccEEEE
Q psy706 1 MAKAKALPRD---------HPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAG-----GIHLFVG 66 (91)
Q Consensus 1 ~dEy~~v~~~---------~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~-----~~Dl~lL 66 (91)
+|+-+|+|+. ++++-.++.|+.+-++.....-..+.+..+.++..++.+...+.+.+.. ..|-+++
T Consensus 93 id~~~GIpp~iF~~Tl~~l~ee~~~kF~rrmcg~~~~~~~f~~~~~r~~~~elk~EL~~l~~~~~~~~~~~~~~wd~aiI 172 (213)
T PF04301_consen 93 IDDEYGIPPAIFAGTLENLSEENLQKFNRRMCGDKELLEKFQSFPPRRSFEELKEELAALYEFIKKNPPADLFHWDKAII 172 (213)
T ss_pred cCCCCCCCHHHHHHHHHhCCHHHHHHHHHHhcCCchhhHHhhcCCcCCCHHHHHHHHHHHHHHHhccCCCCCccccEEEE
Confidence 3666777764 6666667777666554322111111122223345555555444444321 3677776
Q ss_pred ccc
Q psy706 67 GEV 69 (91)
Q Consensus 67 G~G 69 (91)
|-.
T Consensus 173 g~~ 175 (213)
T PF04301_consen 173 GKK 175 (213)
T ss_pred cCC
Confidence 643
No 50
>PRK13787 adenylosuccinate synthetase; Provisional
Probab=34.60 E-value=36 Score=26.42 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHhhcCCccEEEEcccCCC
Q psy706 43 DLHAECVQYEKDIKEAGGIHLFVGGEVLIG 72 (91)
Q Consensus 43 ~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dG 72 (91)
+.-++|++|-+.|++.-+.-+.++|+|++-
T Consensus 387 ~LP~~a~~yi~~iE~~~g~pi~~is~Gp~R 416 (423)
T PRK13787 387 KLPEKCKNYISALEKWIGVKINLVSTGPDR 416 (423)
T ss_pred hcCHHHHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 456789999999999888889999999974
No 51
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=34.32 E-value=74 Score=18.28 Aligned_cols=31 Identities=19% Similarity=0.506 Sum_probs=25.7
Q ss_pred CCCCCCeEeCCCCCcCHHHHHHHHHHHHhhc
Q psy706 28 DIQPENVHILDGNAPDLHAECVQYEKDIKEA 58 (91)
Q Consensus 28 ~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~ 58 (91)
++.|-+|..|++..++..++|.+-...+++.
T Consensus 16 GLRPVqiWVPDtr~p~F~~E~rRQs~lva~d 46 (65)
T PF11455_consen 16 GLRPVQIWVPDTRRPEFAAECRRQSRLVAQD 46 (65)
T ss_pred CCCcceeeCCCCCChHHHHHHHHHHHHHhcC
Confidence 4567788999999888999999988888763
No 52
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=34.24 E-value=1e+02 Score=20.09 Aligned_cols=29 Identities=3% Similarity=-0.278 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHh--hcCCccEEEEcccCCC
Q psy706 44 LHAECVQYEKDIK--EAGGIHLFVGGEVLIG 72 (91)
Q Consensus 44 ~~~~~~~y~~~i~--~~~~~Dl~lLG~G~dG 72 (91)
.....+++++... .....|++++.+|.|=
T Consensus 50 ~~~~~~r~~~~~~~~~~~~~d~V~i~~G~ND 80 (204)
T cd04506 50 SDQLLKRLKTKKVQKELKKADVITITIGGND 80 (204)
T ss_pred HHHHHHHHhcchhhhhcccCCEEEEEecchh
Confidence 3445555554432 2236899999999874
No 53
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=34.17 E-value=73 Score=21.32 Aligned_cols=29 Identities=14% Similarity=0.068 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcccCCC
Q psy706 44 LHAECVQYEKDIKEAGGIHLFVGGEVLIG 72 (91)
Q Consensus 44 ~~~~~~~y~~~i~~~~~~Dl~lLG~G~dG 72 (91)
-..++.++...+.++...+..++||-+|-
T Consensus 46 CT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds 74 (157)
T COG1225 46 CTTEACDFRDLLEEFEKLGAVVLGISPDS 74 (157)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 45666778888887777789999998875
No 54
>PRK01254 hypothetical protein; Provisional
Probab=33.82 E-value=81 Score=26.19 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=15.5
Q ss_pred CeEeCCCCC-cCHHHHHHHHHHHHhh
Q psy706 33 NVHILDGNA-PDLHAECVQYEKDIKE 57 (91)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~y~~~i~~ 57 (91)
--+.+.+.. .-|+.++-.|.++|++
T Consensus 120 DaYtPgg~~g~RPdrA~ivy~~~~r~ 145 (707)
T PRK01254 120 DAYTPDNVAGKRPDRATLVYTQRCKE 145 (707)
T ss_pred cCcCCCCCCCCCCChhHHHHHHHHHH
Confidence 335554443 3467777778888776
No 55
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=33.61 E-value=39 Score=23.59 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=13.5
Q ss_pred EEEEcccCCCccccCC
Q psy706 63 LFVGGEVLIGQIRSYN 78 (91)
Q Consensus 63 l~lLG~G~dGH~As~~ 78 (91)
+++.|+|..||+|--|
T Consensus 42 v~V~G~GkSG~Igkk~ 57 (202)
T COG0794 42 VFVTGVGKSGLIGKKF 57 (202)
T ss_pred EEEEcCChhHHHHHHH
Confidence 8999999999998443
No 56
>PRK05599 hypothetical protein; Provisional
Probab=33.57 E-value=1.1e+02 Score=20.83 Aligned_cols=38 Identities=29% Similarity=0.260 Sum_probs=25.5
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
.++....+..++++..+.+++..+..+++|+++..-|.
T Consensus 50 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nag~ 87 (246)
T PRK05599 50 SVHVLSFDAQDLDTHRELVKQTQELAGEISLAVVAFGI 87 (246)
T ss_pred ceEEEEcccCCHHHHHHHHHHHHHhcCCCCEEEEecCc
Confidence 34444455556666666666666677899999986654
No 57
>KOG2960|consensus
Probab=33.49 E-value=62 Score=23.58 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcccCCCccccCC
Q psy706 45 HAECVQYEKDIKEAGGIHLFVGGEVLIGQIRSYN 78 (91)
Q Consensus 45 ~~~~~~y~~~i~~~~~~Dl~lLG~G~dGH~As~~ 78 (91)
.+..++|-+.+.++..-|+++.|-|.-|-.|...
T Consensus 61 RaMTrRYf~DldkyAesDvviVGAGSaGLsAAY~ 94 (328)
T KOG2960|consen 61 RAMTRRYFKDLDKYAESDVVIVGAGSAGLSAAYV 94 (328)
T ss_pred HHHHHHHHHHHHhhhccceEEECCCccccceeee
Confidence 3456899999988888999999999999887543
No 58
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=33.13 E-value=1.3e+02 Score=20.63 Aligned_cols=43 Identities=7% Similarity=0.140 Sum_probs=28.1
Q ss_pred HHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhhcC
Q psy706 17 YYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAG 59 (91)
Q Consensus 17 ~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~ 59 (91)
..+.+.|++...-+..++.++++...++++.++.|.+.++++|
T Consensus 15 ~~i~~~~~~~ag~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG 57 (217)
T cd03145 15 RAILQRFVARAGGAGARIVVIPAASEEPAEVGEEYRDVFERLG 57 (217)
T ss_pred HHHHHHHHHHcCCCCCcEEEEeCCCcChhHHHHHHHHHHHHcC
Confidence 3445556665544456676666655567777888888887774
No 59
>PRK13551 agmatine deiminase; Provisional
Probab=33.08 E-value=52 Score=24.84 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=23.8
Q ss_pred HHHHHHHHhhcCCc-cEEEEccc-----CCCcc----ccCCCCC
Q psy706 48 CVQYEKDIKEAGGI-HLFVGGEV-----LIGQI----RSYNSES 81 (91)
Q Consensus 48 ~~~y~~~i~~~~~~-Dl~lLG~G-----~dGH~----As~~Pg~ 81 (91)
-++.++.|++..|+ .+++|.-| .|||+ .|.-|++
T Consensus 182 ~~~ie~~Lk~~LGv~kvIWL~~g~~~DdTdGHiD~~arFv~~~~ 225 (362)
T PRK13551 182 KEQIEQLLRDYLGVEKVIWLPDGIYNDETDGHVDNVCCFVRPGE 225 (362)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCCcchhheEEeeCCCE
Confidence 35577888775554 48898654 78999 5777764
No 60
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=32.45 E-value=63 Score=20.98 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhcCCccEEEEcccCC
Q psy706 47 ECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 47 ~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
....+++.++..+-+-++|+|.|.+
T Consensus 56 t~e~f~~vl~~a~~~EilliGTG~~ 80 (127)
T COG3737 56 TPEDFERVLAEAPDVEILLIGTGAR 80 (127)
T ss_pred CHHHHHHHHhcCCCceEEEEecCcc
Confidence 3577888888887789999999985
No 61
>TIGR00184 purA adenylosuccinate synthase. Alternate name IMP--aspartate ligase.
Probab=32.32 E-value=59 Score=25.29 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHhhcCCccEEEEcccCCC
Q psy706 43 DLHAECVQYEKDIKEAGGIHLFVGGEVLIG 72 (91)
Q Consensus 43 ~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dG 72 (91)
+.-++|++|-+.|++.-+.-+.++|+|++-
T Consensus 385 ~LP~~a~~yi~~iE~~~g~pV~~is~Gp~R 414 (425)
T TIGR00184 385 DLPENAKKYIERIEELTGVPVTIISTGPER 414 (425)
T ss_pred hCCHHHHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 445689999999998888889999999974
No 62
>TIGR03790 conserved hypothetical protein TIGR03790. Despite a broad and sporadic distribution (Cyanobacteria, Verrucomicrobia, Acidobacteria, beta and delta Proteobacteria, and Planctomycetes), this uncharacterized protein family occurs only among the roughly 8 percent of prokarotyic species that carry homologs of the integral membrane protein exosortase (see TIGR02602), a proposed protein-sorting system transpeptidase.
Probab=32.17 E-value=34 Score=25.56 Aligned_cols=30 Identities=27% Similarity=0.248 Sum_probs=23.3
Q ss_pred CCCChhhHHHHHHHHhcCCCCCCCCCeEeCCC
Q psy706 8 PRDHPESYHYYMWHNFFSHIDIQPENVHILDG 39 (91)
Q Consensus 8 ~~~~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~ 39 (91)
...+|.| ..+-+++.++-.||++|++.++.
T Consensus 8 N~~dp~S--v~ia~yYa~~R~IP~~nii~L~~ 37 (316)
T TIGR03790 8 NGADPES--VQIARYYAEKRGIPEENLITLDL 37 (316)
T ss_pred cCCChhH--HHHHHHHHHHcCCCHHHEEEEEC
Confidence 4566666 67788888888999999987754
No 63
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.60 E-value=1.3e+02 Score=20.48 Aligned_cols=38 Identities=8% Similarity=0.016 Sum_probs=26.0
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
+++....+..++++..+..++..++++++|+++.--|.
T Consensus 56 ~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 56 EDLLVECDVASDESIERAFATIKERVGKIDGIVHAIAY 93 (252)
T ss_pred ceeEEeCCCCCHHHHHHHHHHHHHHhCCCCEEEEcccc
Confidence 44444445556666666677766778899999986664
No 64
>PRK04293 adenylosuccinate synthetase; Provisional
Probab=31.14 E-value=45 Score=25.12 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHhhcCCccEEEEcccCC
Q psy706 43 DLHAECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 43 ~~~~~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
+.-++|+.|-+.|++.-+.-+.++|.|++
T Consensus 297 ~LP~~a~~yi~~iE~~~~~pv~~is~Gp~ 325 (333)
T PRK04293 297 KLPPEAKKFIEEIEEELGVPVTLISTGPE 325 (333)
T ss_pred HcCHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 55678999999999887888999999986
No 65
>PF00709 Adenylsucc_synt: Adenylosuccinate synthetase; InterPro: IPR001114 Adenylosuccinate synthetase (6.3.4.4 from EC) plays an important role in purine biosynthesis, by catalysing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterised from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present: one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Further, it has been suggested that the similarities in the GTP-binding domains of the synthetase and the p21ras protein are an example of convergent evolution of two distinct families of GTP-binding proteins []. Structures of adenylosuccinate synthetase from Triticum aestivum and Arabidopsis thaliana when compared with the known structures from E. coli reveals that the overall fold is very similar to that of the E. coli protein [].; GO: 0000287 magnesium ion binding, 0004019 adenylosuccinate synthase activity, 0005525 GTP binding, 0006164 purine nucleotide biosynthetic process, 0005737 cytoplasm; PDB: 3HID_A 1DJ3_B 2D7U_A 1DJ2_A 1P9B_A 1LON_A 1MF0_A 1LOO_A 1LNY_B 2DGN_A ....
Probab=30.88 E-value=43 Score=25.91 Aligned_cols=31 Identities=19% Similarity=0.125 Sum_probs=23.6
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEEEcccCCC
Q psy706 42 PDLHAECVQYEKDIKEAGGIHLFVGGEVLIG 72 (91)
Q Consensus 42 ~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dG 72 (91)
++.-++|++|-+.|++.-+.-+.++|.|++-
T Consensus 386 e~LP~~a~~yi~~IE~~lgvpI~~is~GP~R 416 (421)
T PF00709_consen 386 EDLPENAREYIEFIEEELGVPITIISVGPER 416 (421)
T ss_dssp GGS-HHHHHHHHHHHHHHTS-EEEEE-SSST
T ss_pred hHcCHHHHHHHHHHHHHHCCCEEEEEeCCCh
Confidence 3556789999999998878889999999974
No 66
>PRK12937 short chain dehydrogenase; Provisional
Probab=30.67 E-value=1.4e+02 Score=19.75 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=27.2
Q ss_pred CCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 32 ENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
.+++....+..++++.-+..++..+.++++|+++.-.|.
T Consensus 55 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (245)
T PRK12937 55 GRAIAVQADVADAAAVTRLFDAAETAFGRIDVLVNNAGV 93 (245)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 355655555556666666666666777899999988775
No 67
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=30.41 E-value=97 Score=19.25 Aligned_cols=40 Identities=13% Similarity=0.259 Sum_probs=27.8
Q ss_pred CCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCC
Q psy706 32 ENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
.++++...+..+.++..+..++.....+++|+++..-|.-
T Consensus 52 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 52 AKITFIECDLSDPESIRALIEEVIKRFGPLDILINNAGIF 91 (167)
T ss_dssp SEEEEEESETTSHHHHHHHHHHHHHHHSSESEEEEECSCT
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 5666665555566666666666666788999999877763
No 68
>PRK13783 adenylosuccinate synthetase; Provisional
Probab=30.14 E-value=96 Score=24.00 Aligned_cols=29 Identities=7% Similarity=-0.082 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHhhcCCccEEEEcccCC
Q psy706 43 DLHAECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 43 ~~~~~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
+.-++|+.|-+.|++.-+.=+.++|+|++
T Consensus 369 ~~p~~a~~yi~~iE~~~g~pv~~is~Gp~ 397 (404)
T PRK13783 369 LEDKNFLKFVDFIERETGRKIAYISTGPK 397 (404)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 34478999999999887888999999986
No 69
>PRK13786 adenylosuccinate synthetase; Provisional
Probab=29.99 E-value=47 Score=25.79 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHhhcCCccEEEEcccCC
Q psy706 43 DLHAECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 43 ~~~~~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
+.-++|++|-+.|++.-+.-+.++|+|++
T Consensus 388 ~LP~~a~~yi~~iE~~~gvpv~~is~Gp~ 416 (424)
T PRK13786 388 DLPENARNYVERLEELMGVPIKYISVGPG 416 (424)
T ss_pred hcCHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 45568999999999888888999999986
No 70
>PRK06138 short chain dehydrogenase; Provisional
Probab=29.31 E-value=1.6e+02 Score=19.60 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=27.3
Q ss_pred CCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 32 ENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
.++.....+..++++..+..++..+..+++|+++...|.
T Consensus 53 ~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 53 GRAFARQGDVGSAEAVEALVDFVAARWGRLDVLVNNAGF 91 (252)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 345555555556666667777777778899999987774
No 71
>KOG1549|consensus
Probab=28.86 E-value=1.1e+02 Score=23.86 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=30.9
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCCCccccCCCCCCCCCCCeec
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLIGQIRSYNSESRKISRNTDV 90 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dGH~As~~Pg~~~~~~~~~v 90 (91)
+|.++++.-...-..|+.|++. ++.+..|.+..+|++-...=-....++||+|
T Consensus 133 ~iitl~~eH~~v~~s~~~l~~~-----g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv 185 (428)
T KOG1549|consen 133 HIITLQTEHPCVLDSCRALQEE-----GLEVTYLPVEDSGLVDISKLREAIRSKTRLV 185 (428)
T ss_pred eEEEecccCcchhHHHHHHHhc-----CeEEEEeccCccccccHHHHHHhcCCCceEE
Confidence 5555555433344445555444 6999999999988875332222334456554
No 72
>PLN00081 photosystem I reaction center subunit V (PsaG); Provisional
Probab=28.79 E-value=28 Score=22.68 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhcC--CccEE-EEcccCCCccc
Q psy706 44 LHAECVQYEKDIKEAG--GIHLF-VGGEVLIGQIR 75 (91)
Q Consensus 44 ~~~~~~~y~~~i~~~~--~~Dl~-lLG~G~dGH~A 75 (91)
-++.|++|...++... ||-++ +|++|.=||+-
T Consensus 90 gd~ra~e~~~~l~tnDPaGF~ivDvlawGsiGH~v 124 (141)
T PLN00081 90 GDERAKEFAALLKSNDPVGFNLVDVLAWGSLGHIV 124 (141)
T ss_pred HHHHHHHHHHhhccCCCCccchhhhhhhhhhhhhh
Confidence 4667888888887654 44433 68999999974
No 73
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=28.78 E-value=1.8e+02 Score=19.40 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCCCCC--CCeE-eC-CCCCcCH-HHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 17 YYMWHNFFSHIDIQP--ENVH-IL-DGNAPDL-HAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 17 ~~l~~~ll~~~~i~~--~~~~-~~-~~~~~~~-~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
.++++.|+...+-.+ .++. .+ +|...++ +..+.+..+.+++. |+-+..+|+|.
T Consensus 92 ~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~-gV~i~~vGiG~ 149 (192)
T cd01473 92 KYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLLYKEE-NVKLLVVGVGA 149 (192)
T ss_pred HHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHHHHHC-CCEEEEEEecc
Confidence 456677765432111 2333 22 5554433 23455666677777 68889999994
No 74
>PRK13788 adenylosuccinate synthetase; Provisional
Probab=28.76 E-value=54 Score=25.34 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHhhcCCccEEEEcccCC
Q psy706 43 DLHAECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 43 ~~~~~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
+.-++|++|-+.|++.-+.-+.++|.|++
T Consensus 365 ~LP~~a~~yi~~iE~~~g~pv~~is~Gp~ 393 (404)
T PRK13788 365 ALPKEAQAYLELIEETTGVPVVMFSTSPR 393 (404)
T ss_pred hcCHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 45567999999999887788999999986
No 75
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=28.66 E-value=74 Score=23.14 Aligned_cols=35 Identities=11% Similarity=-0.079 Sum_probs=23.1
Q ss_pred cCHHHHHHHHHHHHhhc---CCccEEEEcccCCCcccc
Q psy706 42 PDLHAECVQYEKDIKEA---GGIHLFVGGEVLIGQIRS 76 (91)
Q Consensus 42 ~~~~~~~~~y~~~i~~~---~~~Dl~lLG~G~dGH~As 76 (91)
.+-++-...+++.|... ...|++++-.|-|+|-.-
T Consensus 219 ~~d~~y~~~~~~~l~~~~~~f~P~~ivvsaG~D~~~~D 256 (311)
T PF00850_consen 219 TGDDEYLEAFEEILLPALEEFRPDLIVVSAGFDAHAGD 256 (311)
T ss_dssp EBHHHHHHHHHHHHHHHHHHHT-SEEEEEE-STTBTTS
T ss_pred cchHHHHHHHhhccccchhcccCcEEEEccCcccchhc
Confidence 34556666676666332 267999999999999764
No 76
>COG0104 PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=28.30 E-value=53 Score=25.57 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHhhcCCccEEEEcccCC
Q psy706 43 DLHAECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 43 ~~~~~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
+.-+.|+.|-+.|++.-+.=+.+++.||+
T Consensus 390 ~LP~~A~~Yi~~iEE~~gvPV~iistGP~ 418 (430)
T COG0104 390 DLPENARKYIKRIEELVGVPVTIISTGPE 418 (430)
T ss_pred HcCHHHHHHHHHHHHHHCCCEEEEecCCC
Confidence 45578999999999987778999999986
No 77
>smart00788 Adenylsucc_synt Adenylosuccinate synthetase. Adenylosuccinate synthetase plays an important role in purine biosynthesis, by catalyzing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterized from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present - one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Furt
Probab=28.12 E-value=54 Score=25.40 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHhhcCCccEEEEcccCC
Q psy706 43 DLHAECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 43 ~~~~~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
+.-++|++|-+.|++.-+.-+.++|.|++
T Consensus 387 ~LP~~a~~yi~~iE~~~g~pv~~is~Gp~ 415 (421)
T smart00788 387 DLPENAKKYIERIEELVGVPVSLISTGPD 415 (421)
T ss_pred hcCHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 44567899999999887888999999996
No 78
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.05 E-value=1.5e+02 Score=22.14 Aligned_cols=16 Identities=6% Similarity=-0.118 Sum_probs=14.5
Q ss_pred CccEEEEcccCCCccc
Q psy706 60 GIHLFVGGEVLIGQIR 75 (91)
Q Consensus 60 ~~Dl~lLG~G~dGH~A 75 (91)
..|++|+-.|-|+|-.
T Consensus 239 ~PdlvivsaG~D~h~~ 254 (340)
T COG0123 239 KPDLVIVSAGFDAHRG 254 (340)
T ss_pred CCCEEEEecCcccCCC
Confidence 6799999999999965
No 79
>PHA02762 hypothetical protein; Provisional
Probab=28.05 E-value=46 Score=18.58 Aligned_cols=22 Identities=18% Similarity=0.013 Sum_probs=18.1
Q ss_pred CCccEEEEcccCCCccc--cCCCC
Q psy706 59 GGIHLFVGGEVLIGQIR--SYNSE 80 (91)
Q Consensus 59 ~~~Dl~lLG~G~dGH~A--s~~Pg 80 (91)
-|.-++-.|+-++|.+| |.+|-
T Consensus 25 eg~afvtigide~g~iayisiep~ 48 (62)
T PHA02762 25 EGEAFVTIGIDENDKISYISIEPL 48 (62)
T ss_pred cccEEEEEeECCCCcEEEEEeccc
Confidence 35678899999999999 67775
No 80
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=27.74 E-value=57 Score=20.41 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=18.4
Q ss_pred hHHHHHHHHhcCCCCCCCCCeEeCC
Q psy706 14 SYHYYMWHNFFSHIDIQPENVHILD 38 (91)
Q Consensus 14 Sn~~~l~~~ll~~~~i~~~~~~~~~ 38 (91)
...+.+-+.|-++++||++++++--
T Consensus 76 ~~s~~i~~~l~~~LgIp~dRiYI~f 100 (113)
T PTZ00450 76 MMTPRITAAITKECGIPAERIYVFY 100 (113)
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEE
Confidence 4445666777788899999988653
No 81
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=27.55 E-value=1.6e+02 Score=20.95 Aligned_cols=27 Identities=15% Similarity=0.056 Sum_probs=17.2
Q ss_pred HHHHHHHH---HhhcCCccEEEEcccCCCc
Q psy706 47 ECVQYEKD---IKEAGGIHLFVGGEVLIGQ 73 (91)
Q Consensus 47 ~~~~y~~~---i~~~~~~Dl~lLG~G~dGH 73 (91)
|-+.|++. +.+...-.|+|+-+||.+-
T Consensus 151 Af~~~d~I~~~i~~~~~~~LiLiaLGPTAt 180 (225)
T PF08759_consen 151 AFSKYDEILEAIKKYAKDKLILIALGPTAT 180 (225)
T ss_pred hHHHHHHHHHHHHHhCCCcEEEEecCCcch
Confidence 34455444 4445556799999998653
No 82
>PTZ00346 histone deacetylase; Provisional
Probab=27.50 E-value=1.4e+02 Score=23.37 Aligned_cols=33 Identities=6% Similarity=-0.256 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHhh---cCCccEEEEcccCCCccc
Q psy706 43 DLHAECVQYEKDIKE---AGGIHLFVGGEVLIGQIR 75 (91)
Q Consensus 43 ~~~~~~~~y~~~i~~---~~~~Dl~lLG~G~dGH~A 75 (91)
+-++-.+.+++.|.. ....|++|+-.|-|+|..
T Consensus 248 ~D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~ 283 (429)
T PTZ00346 248 TDFYYLGLFEHALHSIVRRYSPDAIVLQCGADSLAG 283 (429)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEECCccCCCC
Confidence 344555666655433 236799999999999975
No 83
>KOG0085|consensus
Probab=27.05 E-value=64 Score=23.74 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhc---------CCccEEEEcccCCCccccC
Q psy706 45 HAECVQYEKDIKEA---------GGIHLFVGGEVLIGQIRSY 77 (91)
Q Consensus 45 ~~~~~~y~~~i~~~---------~~~Dl~lLG~G~dGH~As~ 77 (91)
+.++++..+.|+.. +.+-+++||-|+.|-.-|+
T Consensus 15 ~ke~~ri~~eierql~rdkk~arrelkllllgtgesgkstfi 56 (359)
T KOG0085|consen 15 EKEAARINQEIERQLRRDKKDARRELKLLLLGTGESGKSTFI 56 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhheeeeecCCCcchhhHH
Confidence 44555555555432 3588999999999976654
No 84
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=26.80 E-value=72 Score=20.72 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=16.6
Q ss_pred HHHHHHHHhhcCCccEEEEcccCC
Q psy706 48 CVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 48 ~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
+..+.+.+++. ++.+..+|+|.+
T Consensus 126 ~~~~a~~l~~~-gv~v~~igiG~~ 148 (186)
T cd01471 126 TLKEARKLRER-GVIIAVLGVGQG 148 (186)
T ss_pred hhHHHHHHHHC-CCEEEEEEeehh
Confidence 34456667665 688999999974
No 85
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=26.74 E-value=1.5e+02 Score=20.08 Aligned_cols=38 Identities=8% Similarity=0.179 Sum_probs=25.6
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
+++....+..+.++..+..++.++.++++|+++-.-|.
T Consensus 56 ~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~lv~~ag~ 93 (251)
T PRK12481 56 KFHFITADLIQQKDIDSIVSQAVEVMGHIDILINNAGI 93 (251)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 44544444556666666666667778899999976654
No 86
>PRK07904 short chain dehydrogenase; Provisional
Probab=26.70 E-value=1.3e+02 Score=20.54 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=23.7
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCCCc
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLIGQ 73 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dGH 73 (91)
+++....+..+.++..+..++.++ .+++|+++.+.|..+.
T Consensus 61 ~v~~~~~D~~~~~~~~~~~~~~~~-~g~id~li~~ag~~~~ 100 (253)
T PRK07904 61 SVEVIDFDALDTDSHPKVIDAAFA-GGDVDVAIVAFGLLGD 100 (253)
T ss_pred ceEEEEecCCChHHHHHHHHHHHh-cCCCCEEEEeeecCCc
Confidence 455554444454444444444443 5789999988887543
No 87
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=26.66 E-value=68 Score=19.19 Aligned_cols=22 Identities=32% Similarity=0.290 Sum_probs=14.7
Q ss_pred HHHHHHhhcCCccEEEEcccCC
Q psy706 50 QYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 50 ~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
.++..++...++|.++.|-|++
T Consensus 94 ~~~~~l~~~~~~D~vv~GegE~ 115 (121)
T PF02310_consen 94 DPEEILREYPGIDYVVRGEGEE 115 (121)
T ss_dssp HHHHHHHHHHTSEEEEEETTSS
T ss_pred ChHHHhccCcCcceecCCChHH
Confidence 3444444434789999998875
No 88
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=26.58 E-value=28 Score=24.85 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=21.2
Q ss_pred HHHHHHHHhhcCCccEEEEcccCCCcccc
Q psy706 48 CVQYEKDIKEAGGIHLFVGGEVLIGQIRS 76 (91)
Q Consensus 48 ~~~y~~~i~~~~~~Dl~lLG~G~dGH~As 76 (91)
.++|-+++.+.-.+|++|.|=|+-|-+|.
T Consensus 5 ~~~~~~~l~~~~~~DV~IVGaGpaGl~aA 33 (230)
T PF01946_consen 5 IERYFEDLYDYLEYDVAIVGAGPAGLTAA 33 (230)
T ss_dssp HHHHHHHHHHHTEESEEEE--SHHHHHHH
T ss_pred HHHHHHHHHhhccCCEEEECCChhHHHHH
Confidence 46777777777789999999999887764
No 89
>PRK08251 short chain dehydrogenase; Provisional
Probab=26.55 E-value=1.9e+02 Score=19.26 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=25.8
Q ss_pred CCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 32 ENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
.+++....+..++++..+..++..+..+++|.++..-|-
T Consensus 53 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 91 (248)
T PRK08251 53 IKVAVAALDVNDHDQVFEVFAEFRDELGGLDRVIVNAGI 91 (248)
T ss_pred ceEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 456666555556666556566666667889999876554
No 90
>PRK01117 adenylosuccinate synthetase; Provisional
Probab=26.52 E-value=85 Score=24.45 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHhhcCCccEEEEcccCCC
Q psy706 43 DLHAECVQYEKDIKEAGGIHLFVGGEVLIG 72 (91)
Q Consensus 43 ~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dG 72 (91)
+.-++|+.|-+.|++.-+.-+.++|+|++-
T Consensus 389 ~LP~~a~~yi~~iE~~~g~pv~~is~Gp~r 418 (430)
T PRK01117 389 DLPENARKYIKRIEELTGVPISIISTGPDR 418 (430)
T ss_pred hcCHHHHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 445678999999988878889999999974
No 91
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=25.92 E-value=1.8e+02 Score=19.40 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=26.4
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
++.....+..++++..+..++..+.++++|+++...|.
T Consensus 50 ~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag~ 87 (254)
T TIGR02415 50 KAVAYKLDVSDKDQVFSAIDQAAEKFGGFDVMVNNAGV 87 (254)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 45555555556666666667777778889999987765
No 92
>PRK12743 oxidoreductase; Provisional
Probab=25.73 E-value=1.8e+02 Score=19.63 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=27.2
Q ss_pred CCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 32 ENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
.+++....+..++++.-+..++..+.++++|.++.--|.
T Consensus 52 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (256)
T PRK12743 52 VRAEIRQLDLSDLPEGAQALDKLIQRLGRIDVLVNNAGA 90 (256)
T ss_pred CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 345555555566666666677777788899999987654
No 93
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=25.16 E-value=51 Score=24.49 Aligned_cols=18 Identities=17% Similarity=0.219 Sum_probs=16.0
Q ss_pred cCCccEEEEcccCCCccc
Q psy706 58 AGGIHLFVGGEVLIGQIR 75 (91)
Q Consensus 58 ~~~~Dl~lLG~G~dGH~A 75 (91)
.+.+|+++.-.-+.|||-
T Consensus 123 ~~~yD~IV~DtaPTG~TL 140 (322)
T COG0003 123 SGEYDVIVVDTAPTGHTL 140 (322)
T ss_pred ccCCCEEEEcCCChHHHH
Confidence 357999999999999985
No 94
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=25.04 E-value=1.8e+02 Score=19.74 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=25.3
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
+++....+..++++..+..++..+.++++|+++--.|.
T Consensus 49 ~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li~naG~ 86 (259)
T PRK08340 49 EVYAVKADLSDKDDLKNLVKEAWELLGGIDALVWNAGN 86 (259)
T ss_pred CceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 34444444556666666666666778899999976664
No 95
>PTZ00350 adenylosuccinate synthetase; Provisional
Probab=24.87 E-value=92 Score=24.32 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHhhcCCccEEEEcccCCC
Q psy706 43 DLHAECVQYEKDIKEAGGIHLFVGGEVLIG 72 (91)
Q Consensus 43 ~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dG 72 (91)
+.-++|++|-+.|++.-+.-+.+++.|++-
T Consensus 400 ~LP~~a~~yi~~iE~~~g~pV~~is~Gp~R 429 (436)
T PTZ00350 400 ELPENAQKYVLFIEELLGVPIVWIGVGPNR 429 (436)
T ss_pred hcCHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 455678999999988878889999999973
No 96
>PF01339 CheB_methylest: CheB methylesterase; InterPro: IPR000673 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the signal transduction response regulator CheB involved in chemotaxis. CheB methylesterase is responsible for removing the methyl group from the gamma-glutamyl methyl ester residues in the methyl-accepting chemotaxis proteins (MCP). The enzyme catalyses the reaction: protein L-glutamate O-methyl ester and water is converted to protein L-glutamate and methanol. CheB is regulated through phosphorylation by CheA. The N-terminal region of the protein is similar to that of other regulatory components of sensory transduction systems. The Myxococcus xanthus FrzG protein also belongs to this family, and is required for the normal aggregation of cells during fruiting body formation.; GO: 0000156 two-component response regulator activity, 0008984 protein-glutamate methylesterase activity, 0000160 two-component signal transduction system (phosphorelay), 0006935 chemotaxis, 0005737 cytoplasm; PDB: 1CHD_A 1A2O_B 3SFT_A.
Probab=24.82 E-value=35 Score=23.01 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=10.1
Q ss_pred ccEEEEcccCCCcc
Q psy706 61 IHLFVGGEVLIGQI 74 (91)
Q Consensus 61 ~Dl~lLG~G~dGH~ 74 (91)
+=++|=|||.||=-
T Consensus 118 i~ViLsG~G~DGa~ 131 (182)
T PF01339_consen 118 IGVILSGMGSDGAA 131 (182)
T ss_dssp EEEE-SBSSSTTHH
T ss_pred EEEEecCCchHHHH
Confidence 55777799999943
No 97
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.82 E-value=1.5e+02 Score=20.33 Aligned_cols=33 Identities=6% Similarity=0.134 Sum_probs=23.7
Q ss_pred CCCcCHHHHHHHHHHHHhhcCCccEEEEcccCC
Q psy706 39 GNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 39 ~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
.+..++++..+..++..++++.+|+++-+.|..
T Consensus 65 ~Dv~~~~~v~~~~~~~~~~~g~iDilVnnag~~ 97 (260)
T PRK06603 65 LDVTNPKSISNLFDDIKEKWGSFDFLLHGMAFA 97 (260)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCccEEEEccccC
Confidence 344566666666666667788999999988753
No 98
>KOG3655|consensus
Probab=24.48 E-value=37 Score=26.78 Aligned_cols=16 Identities=13% Similarity=0.138 Sum_probs=13.7
Q ss_pred EEEcccCCCccccCCCC
Q psy706 64 FVGGEVLIGQIRSYNSE 80 (91)
Q Consensus 64 ~lLG~G~dGH~As~~Pg 80 (91)
-+.|.|+||+.+ +||-
T Consensus 462 ww~g~~pdG~~g-lfPa 477 (484)
T KOG3655|consen 462 WWTGQGPDGEVG-LFPA 477 (484)
T ss_pred cccccCCCCCcC-cccc
Confidence 378999999999 8885
No 99
>PRK07478 short chain dehydrogenase; Provisional
Probab=24.48 E-value=1.9e+02 Score=19.38 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=25.9
Q ss_pred eEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCC
Q psy706 34 VHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 34 ~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
+.....+..++++..+..++..++++++|+++.--|.-
T Consensus 57 ~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 94 (254)
T PRK07478 57 AVALAGDVRDEAYAKALVALAVERFGGLDIAFNNAGTL 94 (254)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 44444445566666666777777788999999877653
No 100
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=24.44 E-value=28 Score=19.64 Aligned_cols=12 Identities=8% Similarity=-0.163 Sum_probs=7.4
Q ss_pred CCCccccCCCCC
Q psy706 70 LIGQIRSYNSES 81 (91)
Q Consensus 70 ~dGH~As~~Pg~ 81 (91)
.+||.+..|||.
T Consensus 43 D~Ghe~lv~PGP 54 (58)
T PF08940_consen 43 DTGHESLVFPGP 54 (58)
T ss_dssp TTTEEEEE---S
T ss_pred CCCcEEEEeCCC
Confidence 459999999995
No 101
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=24.41 E-value=2.2e+02 Score=18.86 Aligned_cols=38 Identities=26% Similarity=0.135 Sum_probs=26.5
Q ss_pred CCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEccc
Q psy706 32 ENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEV 69 (91)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G 69 (91)
.+++....+..+.++..+..++.+...+++|.++.--|
T Consensus 48 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~li~~ag 85 (239)
T TIGR01831 48 GNARLLQFDVADRVACRTLLEADIAEHGAYYGVVLNAG 85 (239)
T ss_pred CeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 34555555556677666667777777888999987655
No 102
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=24.41 E-value=2e+02 Score=19.18 Aligned_cols=39 Identities=8% Similarity=0.175 Sum_probs=26.0
Q ss_pred CCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 32 ENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
.+++.+..+..++++..+..++..+.++++|+++.--|.
T Consensus 52 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (248)
T PRK06947 52 GRACVVAGDVANEADVIAMFDAVQSAFGRLDALVNNAGI 90 (248)
T ss_pred CcEEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 355555555556666666666666667889999866553
No 103
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=24.38 E-value=95 Score=18.65 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=15.8
Q ss_pred HHHHHHhhcCCccEEEEcccCC
Q psy706 50 QYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 50 ~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
.+-.+|++. +++++++|+|.-
T Consensus 4 ~~~~~l~~~-gv~lv~I~~g~~ 24 (115)
T PF13911_consen 4 RRKPELEAA-GVKLVVIGCGSP 24 (115)
T ss_pred HhHHHHHHc-CCeEEEEEcCCH
Confidence 345566655 789999999986
No 104
>KOG1355|consensus
Probab=24.14 E-value=95 Score=23.95 Aligned_cols=29 Identities=24% Similarity=0.178 Sum_probs=25.2
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 42 PDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 42 ~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
.+.-+.|+.|-+.|+..-++-+.++|+|+
T Consensus 418 ~dlP~~aq~Yv~fiE~~v~vpv~~iGvG~ 446 (455)
T KOG1355|consen 418 KDLPENAQQYVRFIEDFVGVPVKWIGVGK 446 (455)
T ss_pred hhhhHHHHHHHHHHHHhhCCceEEEEecC
Confidence 35667899999999998888899999997
No 105
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.71 E-value=2e+02 Score=19.65 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=24.2
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEccc
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEV 69 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G 69 (91)
+++....+..++++..+..++..+++|++|+++.-.|
T Consensus 60 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ld~lv~nag 96 (257)
T PRK08594 60 ESLLLPCDVTSDEEITACFETIKEEVGVIHGVAHCIA 96 (257)
T ss_pred ceEEEecCCCCHHHHHHHHHHHHHhCCCccEEEECcc
Confidence 4444444555666666666666677889999987554
No 106
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.65 E-value=2.3e+02 Score=18.77 Aligned_cols=39 Identities=8% Similarity=0.109 Sum_probs=26.7
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCC
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
+++....+..++++..+..++..+..+++|+++...|..
T Consensus 54 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 92 (251)
T PRK07231 54 RAIAVAADVSDEADVEAAVAAALERFGSVDILVNNAGTT 92 (251)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 344554555566666666666667778899999888753
No 107
>PRK05875 short chain dehydrogenase; Provisional
Probab=23.64 E-value=2.2e+02 Score=19.42 Aligned_cols=39 Identities=13% Similarity=-0.020 Sum_probs=27.3
Q ss_pred CCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 32 ENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
.++.....+..++++..+..++..++.+++|+++-..|.
T Consensus 58 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~li~~ag~ 96 (276)
T PRK05875 58 GAVRYEPADVTDEDQVARAVDAATAWHGRLHGVVHCAGG 96 (276)
T ss_pred CceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 345555445556666667777777778899999988774
No 108
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=23.44 E-value=2.4e+02 Score=18.98 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhcCCccEEEEcccCCCc
Q psy706 47 ECVQYEKDIKEAGGIHLFVGGEVLIGQ 73 (91)
Q Consensus 47 ~~~~y~~~i~~~~~~Dl~lLG~G~dGH 73 (91)
.+....+.+.+. ++.+.+.|||.++.
T Consensus 150 ~~~~~a~~l~~~-gI~i~~i~i~~~~~ 175 (218)
T cd01458 150 QAAVKAEDLKDK-GIELELFPLSSPGK 175 (218)
T ss_pred HHHHHHHHHHhC-CcEEEEEecCCCCC
Confidence 344444444444 79999999999876
No 109
>PLN02513 adenylosuccinate synthase
Probab=23.33 E-value=1.1e+02 Score=23.92 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHhhcCCccEEEEcccCCC
Q psy706 43 DLHAECVQYEKDIKEAGGIHLFVGGEVLIG 72 (91)
Q Consensus 43 ~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dG 72 (91)
+.-+.|++|-+.|++.-+.=+.+++.|++-
T Consensus 391 ~LP~~a~~yi~~IE~~~g~pv~~is~Gp~R 420 (427)
T PLN02513 391 DLPAAAQAYVERIEELVGVPVHYIGVGPGR 420 (427)
T ss_pred hcCHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 455678999999998877889999999973
No 110
>PRK12654 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=23.27 E-value=1e+02 Score=20.51 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=25.5
Q ss_pred eEeCCCCCc-CHHHHHHHHHHHHhh-cCCccEEEEcccCCC
Q psy706 34 VHILDGNAP-DLHAECVQYEKDIKE-AGGIHLFVGGEVLIG 72 (91)
Q Consensus 34 ~~~~~~~~~-~~~~~~~~y~~~i~~-~~~~Dl~lLG~G~dG 72 (91)
||.++.... +..+..++||+.|.. ...+|--+.|+|+--
T Consensus 82 VHaLd~~d~e~~~~~Ik~~E~~L~~~v~~i~~~~~~~~~~~ 122 (151)
T PRK12654 82 VQAVFGSDPVSVLADIADMEERLAPSVKDIDHGVPGQGPYK 122 (151)
T ss_pred EEeccCCCHHHHHHHHHHHHHHHHHHhcccccCcccCCCCC
Confidence 566775432 123334559988854 568999999999843
No 111
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.12 E-value=2.3e+02 Score=18.64 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=26.2
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCC
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
++.+...+..+++...+..++..+..+++|+++...|..
T Consensus 56 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 56 DAIAVKADVSSEEDVENLVEQIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 445555555566665555666666678899999887764
No 112
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=23.06 E-value=3.5e+02 Score=21.06 Aligned_cols=62 Identities=11% Similarity=-0.002 Sum_probs=35.1
Q ss_pred cccccCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 2 AKAKALPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 2 dEy~~v~~~~~~Sn~~~l~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
|.++-+.+++.--...-|+..+-.+.+.+++.+.-+ |-+...+....++.. .|-.++.|||-
T Consensus 195 d~~~qi~p~sDyelisAl~~~l~G~~~~~~eev~gv------p~~~i~e~a~~mKna-~Fg~if~GlGl 256 (429)
T COG1029 195 DNHVQIKPNSDYELISALRAALHGKEPHRSEEVAGV------PIEEIEELADMMKNA-KFGAIFVGLGL 256 (429)
T ss_pred hheEecCCCCcHHHHHHHHHHhcCCCCCCchhhcCC------CHHHHHHHHHHHhcC-CcceEEEeece
Confidence 445556666655566666666666554433333222 233444555555544 67788888885
No 113
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=23.00 E-value=1.5e+02 Score=21.06 Aligned_cols=27 Identities=19% Similarity=0.063 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcccCC
Q psy706 45 HAECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 45 ~~~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
+...++--+.|+..+++.++=+|||.|
T Consensus 162 ~~HLr~vi~~ie~~~~Vel~aiGIg~D 188 (219)
T PF11775_consen 162 DAHLRQVIAEIETRSDVELIAIGIGHD 188 (219)
T ss_pred HHHHHHHHHHHhccCCcEEEEEEcCCC
Confidence 344455556666666788888888776
No 114
>TIGR03380 agmatine_aguA agmatine deiminase. Members of this family are agmatine deiminase (3.5.3.12), as characterized in Pseudomonas aeruginosa and plants. Related deiminases include the peptidyl-arginine deiminase (3.5.3.15) as found in Porphyromonas gingivalis.
Probab=22.82 E-value=99 Score=23.32 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=21.4
Q ss_pred HHHHHHHhhcCCc-cEEEEc--cc---CCCccc----cCCCCC
Q psy706 49 VQYEKDIKEAGGI-HLFVGG--EV---LIGQIR----SYNSES 81 (91)
Q Consensus 49 ~~y~~~i~~~~~~-Dl~lLG--~G---~dGH~A----s~~Pg~ 81 (91)
++.++.|++..|+ .+++|. ++ .|||+- |.-|++
T Consensus 180 ~eIe~~Lk~~LGv~kviWL~~g~~~DdTdGHID~~arFv~~~t 222 (357)
T TIGR03380 180 EQIEEKLKDYLGVEKVIWLPDGLYNDETNGHVDNLCCFVRPGE 222 (357)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCCcceeeEEEeCCCE
Confidence 5577778775454 488884 43 689984 555553
No 115
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=22.76 E-value=88 Score=20.41 Aligned_cols=40 Identities=25% Similarity=0.416 Sum_probs=27.3
Q ss_pred HHhcCCCCCCCCCeEeCCCCCc---CHHHHHHHHHHHHhhcCC
Q psy706 21 HNFFSHIDIQPENVHILDGNAP---DLHAECVQYEKDIKEAGG 60 (91)
Q Consensus 21 ~~ll~~~~i~~~~~~~~~~~~~---~~~~~~~~y~~~i~~~~~ 60 (91)
+.+++.+.|.++++....-++. ...+....+-++|+++|+
T Consensus 84 ke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~lGp 126 (132)
T COG1908 84 KELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKELGP 126 (132)
T ss_pred HHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHhCC
Confidence 4567778899999887755543 344556667777777764
No 116
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=22.51 E-value=74 Score=19.97 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=14.5
Q ss_pred cccccCCC---------CChhhHHHHHHHH
Q psy706 2 AKAKALPR---------DHPESYHYYMWHN 22 (91)
Q Consensus 2 dEy~~v~~---------~~~~Sn~~~l~~~ 22 (91)
-||.||++ +||+|-.+.++..
T Consensus 34 ~eYrGvsPd~wkgf~~~EDpE~aik~i~D~ 63 (110)
T COG4075 34 HEYRGVSPDKWKGFSKEEDPESAIKAIRDL 63 (110)
T ss_pred EEecCcChhHhcCcccccCHHHHHHHHHHh
Confidence 36677665 4888887777654
No 117
>PRK09242 tropinone reductase; Provisional
Probab=22.25 E-value=2.6e+02 Score=18.83 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=26.4
Q ss_pred CCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 32 ENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
.+++....+..+.++..+..++..+.++++|+++.--|.
T Consensus 60 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 60 REVHGLAADVSDDEDRRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 345555555556666556666666677899999887775
No 118
>KOG4064|consensus
Probab=22.20 E-value=85 Score=21.37 Aligned_cols=18 Identities=22% Similarity=0.073 Sum_probs=14.4
Q ss_pred CCccEEEEcccCCCccccC
Q psy706 59 GGIHLFVGGEVLIGQIRSY 77 (91)
Q Consensus 59 ~~~Dl~lLG~G~dGH~As~ 77 (91)
|.|.|+||=+|+ ||-.|.
T Consensus 70 GKfNLmILCWGe-GhgSSv 87 (196)
T KOG4064|consen 70 GKFNLMILCWGE-GHGSSV 87 (196)
T ss_pred CeEeEEEEEecC-CCCccc
Confidence 479999999998 775554
No 119
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=22.02 E-value=1.5e+02 Score=15.94 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=14.8
Q ss_pred CCCcCHHHHHHHHHHHHhhc
Q psy706 39 GNAPDLHAECVQYEKDIKEA 58 (91)
Q Consensus 39 ~~~~~~~~~~~~y~~~i~~~ 58 (91)
+.-.++++++..|......+
T Consensus 30 G~f~t~eeAa~Ayd~a~~~~ 49 (61)
T cd00018 30 GTFDTAEEAARAYDRAALKL 49 (61)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 44457899999998776655
No 120
>PRK12939 short chain dehydrogenase; Provisional
Probab=21.86 E-value=2.5e+02 Score=18.56 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=25.6
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCC
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
++.....+..+++...+.+++..+.++++|.++...|..
T Consensus 57 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 57 RAHAIAADLADPASVQRFFDAAAAALGGLDGLVNNAGIT 95 (250)
T ss_pred cEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 444444445566665566666666668899999888753
No 121
>PRK13785 adenylosuccinate synthetase; Provisional
Probab=21.83 E-value=1.2e+02 Score=23.89 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHhhcCCccEEEEcccCC
Q psy706 43 DLHAECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 43 ~~~~~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
+.-+.|+.|-+.|++.-+.-+.++|.|++
T Consensus 415 ~LP~~a~~yi~~iE~~~g~pv~~is~Gp~ 443 (454)
T PRK13785 415 ALPENARTYLEYVSDELDTPIYAVGVGPG 443 (454)
T ss_pred hcCHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 45567899999998887788999999986
No 122
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=21.77 E-value=2.4e+02 Score=18.43 Aligned_cols=40 Identities=15% Similarity=0.278 Sum_probs=26.9
Q ss_pred CCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCC
Q psy706 32 ENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
.+++....+..+++...+..++..+.++++|.++...|..
T Consensus 55 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 94 (248)
T PRK05557 55 GKALAVQGDVSDAESVERAVDEAKAEFGGVDILVNNAGIT 94 (248)
T ss_pred CceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 3455555555566666666666666677899999887753
No 123
>COG2001 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.57 E-value=1.4e+02 Score=19.87 Aligned_cols=15 Identities=20% Similarity=0.166 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhc
Q psy706 44 LHAECVQYEKDIKEA 58 (91)
Q Consensus 44 ~~~~~~~y~~~i~~~ 58 (91)
|.++-++++++|+.+
T Consensus 47 p~~ewe~~~~kl~~l 61 (146)
T COG2001 47 PLAEWERLEEKLSAL 61 (146)
T ss_pred CHHHHHHHHHHHHcC
Confidence 355667777777665
No 124
>PTZ00351 adenylosuccinate synthetase; Provisional
Probab=21.46 E-value=1.1e+02 Score=25.32 Aligned_cols=31 Identities=13% Similarity=0.053 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHhhcCCccEEEEcccCCCc
Q psy706 43 DLHAECVQYEKDIKEAGGIHLFVGGEVLIGQ 73 (91)
Q Consensus 43 ~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dGH 73 (91)
+.-+.++.|-+.|+++-+.-+.++|.|+++.
T Consensus 673 ~LP~~a~~Yi~~IE~~~gvpI~~IsvGP~R~ 703 (710)
T PTZ00351 673 PLPRGVCELLSTIEYFTNCKILSIGNGPNGD 703 (710)
T ss_pred HhhHHHHHHHHHHHHHHCCCEEEEecCCChh
Confidence 4566789999999998888899999999864
No 125
>PRK07024 short chain dehydrogenase; Provisional
Probab=21.41 E-value=2.4e+02 Score=19.08 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=26.7
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
+++....+..++++..+..++..++.+.+|+++.-.|.
T Consensus 51 ~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 51 RVSVYAADVRDADALAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred eeEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 55555555566666666666666778889999987765
No 126
>PRK07062 short chain dehydrogenase; Provisional
Probab=21.34 E-value=2.4e+02 Score=19.05 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=24.2
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
+++....+..+.++..+..++..+.++++|+++-.-|.
T Consensus 60 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 60 RLLAARCDVLDEADVAAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 45555444555555555555555667889999987774
No 127
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=21.19 E-value=62 Score=19.84 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=18.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCCeEeCC
Q psy706 13 ESYHYYMWHNFFSHIDIQPENVHILD 38 (91)
Q Consensus 13 ~Sn~~~l~~~ll~~~~i~~~~~~~~~ 38 (91)
....+.+-+.+-++++|+++++++.-
T Consensus 75 ~~l~~~i~~~l~~~lgi~~~rv~I~f 100 (116)
T PTZ00397 75 SSIAAAITKILASHLKVKSERVYIEF 100 (116)
T ss_pred HHHHHHHHHHHHHHhCcCcccEEEEE
Confidence 34555556677777899999988653
No 128
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=20.82 E-value=70 Score=22.58 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=12.7
Q ss_pred HHHHHHHhhcCCccEEEEcccCCCccc
Q psy706 49 VQYEKDIKEAGGIHLFVGGEVLIGQIR 75 (91)
Q Consensus 49 ~~y~~~i~~~~~~Dl~lLG~G~dGH~A 75 (91)
++|-+++.+...+|++|+|=|+-|=+|
T Consensus 14 ~~~~~~~~~~~~~DVvIVGgGpAGl~A 40 (257)
T PRK04176 14 EEYFEKLLDYLEVDVAIVGAGPSGLTA 40 (257)
T ss_pred HHHHHHHHHhccCCEEEECccHHHHHH
Confidence 444444444444555555555544443
No 129
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=20.64 E-value=2.5e+02 Score=19.05 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=26.5
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCCC
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLIG 72 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dG 72 (91)
+++....+..+.++.-+..++..+..+++|.++...|.-+
T Consensus 60 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~~ 99 (265)
T PRK07097 60 EAHGYVCDVTDEDGVQAMVSQIEKEVGVIDILVNNAGIIK 99 (265)
T ss_pred ceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCCCC
Confidence 4454445555666655666666667788999998887633
No 130
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=20.62 E-value=1.6e+02 Score=19.42 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=24.9
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
++.....+..++++..+..+...+..+++|.++.-.|.
T Consensus 51 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 88 (242)
T TIGR01829 51 DFRVVEGDVSSFESCKAAVAKVEAELGPIDVLVNNAGI 88 (242)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCcEEEECCCC
Confidence 44444445556666566666666667889999987764
No 131
>PRK12744 short chain dehydrogenase; Provisional
Probab=20.56 E-value=2.8e+02 Score=18.66 Aligned_cols=38 Identities=5% Similarity=-0.024 Sum_probs=24.5
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
++.....+..++++..+..++..+..+++|+++..-|.
T Consensus 62 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~ 99 (257)
T PRK12744 62 KAVAFQADLTTAAAVEKLFDDAKAAFGRPDIAINTVGK 99 (257)
T ss_pred cEEEEecCcCCHHHHHHHHHHHHHhhCCCCEEEECCcc
Confidence 44444445556666555566666667889999977664
No 132
>PRK07677 short chain dehydrogenase; Provisional
Probab=20.49 E-value=2.6e+02 Score=18.77 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=26.6
Q ss_pred CCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 32 ENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
.+++....+..+++...+..++..+.++++|+++--.|.
T Consensus 50 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lI~~ag~ 88 (252)
T PRK07677 50 GQVLTVQMDVRNPEDVQKMVEQIDEKFGRIDALINNAAG 88 (252)
T ss_pred CcEEEEEecCCCHHHHHHHHHHHHHHhCCccEEEECCCC
Confidence 345555555556666666666666777889999987774
No 133
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=20.39 E-value=1.4e+02 Score=21.66 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 45 HAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 45 ~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
.++.+.|-.++-+. |+|++++.+|.
T Consensus 70 ~~Av~e~~~~~L~~-g~d~iV~SVGA 94 (255)
T COG1712 70 PEAVREYVPKILKA-GIDVIVMSVGA 94 (255)
T ss_pred HHHHHHHhHHHHhc-CCCEEEEechh
Confidence 34567776666555 79999999985
No 134
>PRK06720 hypothetical protein; Provisional
Probab=20.38 E-value=2.6e+02 Score=18.27 Aligned_cols=33 Identities=6% Similarity=-0.078 Sum_probs=23.7
Q ss_pred CCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 38 DGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 38 ~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
..+..+.++..+..++.++.+|++|+++---|-
T Consensus 71 ~~Dl~~~~~v~~~v~~~~~~~G~iDilVnnAG~ 103 (169)
T PRK06720 71 SYDMEKQGDWQRVISITLNAFSRIDMLFQNAGL 103 (169)
T ss_pred EccCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 334456667667777777888999999987663
No 135
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=20.23 E-value=1.2e+02 Score=21.71 Aligned_cols=18 Identities=6% Similarity=0.054 Sum_probs=15.8
Q ss_pred CCccEEEEcccCCCcccc
Q psy706 59 GGIHLFVGGEVLIGQIRS 76 (91)
Q Consensus 59 ~~~Dl~lLG~G~dGH~As 76 (91)
+.+|++++=+.+.||+=-
T Consensus 111 ~~yD~iVvDtaPtghtLr 128 (284)
T TIGR00345 111 NEFDVVIFDTAPTGHTLR 128 (284)
T ss_pred ccCCEEEECCCChHHHHH
Confidence 579999999999999853
No 136
>KOG2825|consensus
Probab=20.22 E-value=1.4e+02 Score=22.21 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=20.1
Q ss_pred HHHHHHHHhhcC--CccEEEEcccCCCccc
Q psy706 48 CVQYEKDIKEAG--GIHLFVGGEVLIGQIR 75 (91)
Q Consensus 48 ~~~y~~~i~~~~--~~Dl~lLG~G~dGH~A 75 (91)
|-.|.+.++... .||+++.-..|.|||-
T Consensus 128 amsfae~~klvk~~~F~~vVFDTAPTGHTL 157 (323)
T KOG2825|consen 128 AMSFAEVMKLVKGMNFDVVVFDTAPTGHTL 157 (323)
T ss_pred HHhHHHHHHHhhccccceEEeccCCCccee
Confidence 444555444332 5999999999999997
No 137
>TIGR03728 glyco_access_1 glycosyltransferase, SP_1767 family. Members of this protein family are putative glycosyltransferases. Some members are found close to genes for the accessory secretory (SecA2) system, and are suggested by Partial Phylogenetic Profiling to correlate with SecA2 systems. Glycosylation, therefore, may occur in the cytosol prior to secretion.
Probab=20.21 E-value=2.6e+02 Score=20.44 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=17.1
Q ss_pred HHHHHHHH---HhhcCCccEEEEcccCCC
Q psy706 47 ECVQYEKD---IKEAGGIHLFVGGEVLIG 72 (91)
Q Consensus 47 ~~~~y~~~---i~~~~~~Dl~lLG~G~dG 72 (91)
|-+.|++. +++...-.|+||-+||.+
T Consensus 169 Ay~~yd~I~e~i~~~~k~~LiLlaLGPTA 197 (265)
T TIGR03728 169 AFSKYDEILEAIRENAKNKLILLMLGPTA 197 (265)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCCch
Confidence 34555444 444556789999999864
No 138
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=20.12 E-value=2.8e+02 Score=18.39 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=25.6
Q ss_pred CCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCC
Q psy706 32 ENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLI 71 (91)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~d 71 (91)
.++.....+..+.++..+..+...+..+++|+++...|..
T Consensus 52 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 91 (250)
T TIGR03206 52 GNAQAFACDITDRDSVDTAVAAAEQALGPVDVLVNNAGWD 91 (250)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3455555555555555555555556677899999888763
No 139
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=20.08 E-value=1.7e+02 Score=18.72 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=23.5
Q ss_pred CCCCCeEeCCCCCcCHHHHHHHHHHHHhhcCCc--cEEEEcc
Q psy706 29 IQPENVHILDGNAPDLHAECVQYEKDIKEAGGI--HLFVGGE 68 (91)
Q Consensus 29 i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~--Dl~lLG~ 68 (91)
|+..|+.+- +..++.+-..+.++.|.+..|+ ++++...
T Consensus 40 i~SGNvvf~--~~~~~~~l~~~ie~~l~~~fG~~v~v~vrs~ 79 (137)
T PF08002_consen 40 IQSGNVVFE--SDRDPAELAAKIEKALEERFGFDVPVIVRSA 79 (137)
T ss_dssp TTTTEEEEE--ESS-HHHHHHHHHHHHHHH-TT---EEEEEH
T ss_pred EeeCCEEEe--cCCChHHHHHHHHHHHHHhcCCCeEEEEeeH
Confidence 666776655 3356778888889999876654 4444443
No 140
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=20.07 E-value=1.2e+02 Score=21.89 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=22.4
Q ss_pred CCeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccCCCccc
Q psy706 32 ENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVLIGQIR 75 (91)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~dGH~A 75 (91)
.++..+|+... +.+.+-.+.+... |-|.+++| |.+|.+-
T Consensus 17 ~H~tliDP~k~---~~~~ei~~~~~~~-GTDaImIG-GS~gvt~ 55 (240)
T COG1646 17 RHLTLIDPDKT---EEADEIAEAAAEA-GTDAIMIG-GSDGVTE 55 (240)
T ss_pred eEEEEeCcccc---cccHHHHHHHHHc-CCCEEEEC-CcccccH
Confidence 44445565431 2233333334333 67999998 8899884
No 141
>PRK07791 short chain dehydrogenase; Provisional
Probab=20.01 E-value=2.8e+02 Score=19.32 Aligned_cols=38 Identities=11% Similarity=0.225 Sum_probs=25.9
Q ss_pred CeEeCCCCCcCHHHHHHHHHHHHhhcCCccEEEEcccC
Q psy706 33 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGEVL 70 (91)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 70 (91)
+++....+..+.++..+..++..+.++++|+++.--|.
T Consensus 65 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 65 EAVANGDDIADWDGAANLVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred ceEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 34444445556666666677777778899999986664
Done!