RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy706
         (91 letters)



>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
           NagB {Human (Homo sapiens) [TaxId: 9606]}
          Length = 281

 Score = 51.7 bits (123), Expect = 5e-10
 Identities = 51/80 (63%), Positives = 56/80 (70%)

Query: 7   LPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVG 66
           LPRDHPESYH +MW+NFF HIDI PEN HILDGNA DL AEC  +E+ IK AGGI LFVG
Sbjct: 77  LPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVG 136

Query: 67  GEVLIGQIRSYNSESRKISR 86
           G    G I      S  +SR
Sbjct: 137 GIGPDGHIAFNEPGSSLVSR 156


>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
           NagB {Escherichia coli [TaxId: 562]}
          Length = 266

 Score = 50.9 bits (121), Expect = 9e-10
 Identities = 38/68 (55%), Positives = 51/68 (75%)

Query: 7   LPRDHPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVG 66
           LP++HPESY+ +M  NFF H+DI  EN+++L+GNAPD+ AEC QYE+ I+  G IHLF+G
Sbjct: 77  LPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMG 136

Query: 67  GEVLIGQI 74
           G    G I
Sbjct: 137 GVGNDGHI 144


>d2pnwa1 b.52.1.4 (A:5-369) Membrane-bound lytic murein
           transglycosylase A, MLTA {Agrobacterium tumefaciens
           [TaxId: 358]}
          Length = 365

 Score = 26.1 bits (57), Expect = 0.72
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 4/37 (10%)

Query: 1   MAKAKALPRDHPESYHYYMWHN----FFSHIDIQPEN 33
           M   +    DHP+     +WHN    FF   D+   +
Sbjct: 228 MQTIRQWLADHPDEVDGVLWHNRSYIFFREADVAGLD 264


>d1bt3a_ a.86.1.2 (A:) Catechol oxidase {Sweet potato (Ipomoea
           batatas) [TaxId: 4120]}
          Length = 341

 Score = 25.5 bits (55), Expect = 1.1
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 12/70 (17%)

Query: 1   MAKAKALPRDHPESYHYYM---------WHNFFSHIDIQPENVHILDGNAPDLHAECV-Q 50
           +   KALP D P +++             ++  +  D Q   VH         H   +  
Sbjct: 67  VELMKALPADDPRNFYQQALVHCAYCNGGYDQVNFPD-QEIQVH-NSWLFFPFHRWYLYF 124

Query: 51  YEKDIKEAGG 60
           YE+ + +  G
Sbjct: 125 YERILGKLIG 134


>d1lm6a_ d.167.1.1 (A:) Peptide deformylase {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 202

 Score = 24.4 bits (52), Expect = 2.4
 Identities = 6/44 (13%), Positives = 15/44 (34%)

Query: 11  HPESYHYYMWHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKD 54
              +   Y+  +    +D   ++           ++  VQ+E D
Sbjct: 133 VDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176


>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein
           kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 288

 Score = 24.2 bits (52), Expect = 3.0
 Identities = 7/32 (21%), Positives = 14/32 (43%)

Query: 14  SYHYYMWHNFFSHIDIQPENVHILDGNAPDLH 45
           S   Y+      H D++PEN+ + +     + 
Sbjct: 119 SALEYLHGKGIIHRDLKPENILLNEDMHIQIT 150


>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 271

 Score = 23.8 bits (51), Expect = 4.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 18  YMWHNFFSHIDIQPENVHI 36
           Y+     +H DI+PEN+ +
Sbjct: 118 YLHGIGITHRDIKPENLLL 136


>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 317

 Score = 23.6 bits (50), Expect = 4.3
 Identities = 5/28 (17%), Positives = 9/28 (32%)

Query: 18  YMWHNFFSHIDIQPENVHILDGNAPDLH 45
           Y+      H D+   NV +       + 
Sbjct: 126 YLEDRRLVHRDLAARNVLVKTPQHVKIT 153


>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 362

 Score = 23.5 bits (49), Expect = 5.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 15  YHYYMWHNFFSHIDIQPENVHILDGNAPD 43
             Y        H DI+PENV +   ++P+
Sbjct: 138 LDYMHRRCGIIHTDIKPENVLMEIVDSPE 166


>d2g5da1 b.52.1.4 (A:40-441) Membrane-bound lytic murein
           transglycosylase A, MLTA {Neisseria gonorrhoeae [TaxId:
           485]}
          Length = 402

 Score = 23.4 bits (50), Expect = 5.1
 Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 4/36 (11%)

Query: 1   MAKAKALPRDHPESYHYYMWHN----FFSHIDIQPE 32
           M   KA  R +P+     +  N    FF  +     
Sbjct: 268 MQGIKAYMRQNPQRLAEVLGQNPSYIFFRELAGSGG 303


>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase
           kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId:
           9986]}
          Length = 277

 Score = 23.5 bits (50), Expect = 5.5
 Identities = 5/19 (26%), Positives = 10/19 (52%)

Query: 18  YMWHNFFSHIDIQPENVHI 36
            +      H D++PEN+ +
Sbjct: 125 ALHKLNIVHRDLKPENILL 143


>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing
          protein C19orf7 (KIAA1064) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 56

 Score = 21.8 bits (46), Expect = 9.2
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 24 FSHIDIQPENVHILDGNAPDLHAECVQYEKDIKE 57
          FSH  +  E   +LD    D      + EK+++E
Sbjct: 20 FSHDPLTEETRELLDKMLADDAEAGAEDEKEVEE 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 371,216
Number of extensions: 15175
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 44
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)