BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7060
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 84/160 (52%), Gaps = 37/160 (23%)
Query: 1 MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
+LD K + ++EKELE VGIRLNK P+I K+K+ G
Sbjct: 156 ILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG-------------------- 195
Query: 61 ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
GI+ +T PLT + ++ ++ EY+I +AE+ FR D D+LI
Sbjct: 196 ----------------GISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLI 239
Query: 121 DVINAN-RVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
DV+ A+ R Y+P IY NKID +SIEE++ + R PN+V +
Sbjct: 240 DVLEASSRRYMPAIYVLNKIDSLSIEELELLYRIPNAVPI 279
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|B Chain B, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|C Chain C, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|D Chain D, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
Length = 433
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 28 KKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTCPLT 87
+K ++ K+ + GG+AF+S E + +L E K E K +++ P
Sbjct: 268 RKEGVFAKEVRTGGMAFHS-----YFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEA 322
Query: 88 QVNEKLVQLILHEYKIFN--AEVLFRE 112
Q + L + EY + N + VLF+E
Sbjct: 323 QWHSSLARTSSAEYNVNNLVSPVLFQE 349
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
Length = 425
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 28 KKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTCPLT 87
+K ++ K+ + GG+AF+S E + +L E K E K +++ P
Sbjct: 268 RKEGVFAKEVRTGGMAFHS-----YFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEA 322
Query: 88 QVNEKLVQLILHEYKIFN--AEVLFRE 112
Q + L + EY + N + VLF+E
Sbjct: 323 QWHSSLARTSSAEYNVNNLVSPVLFQE 349
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 30.0 bits (66), Expect = 0.62, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 28 KKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTCPLT 87
+K ++ K+ + GG+AF+S E + +L E K E K +++ P
Sbjct: 668 RKEGVFAKEVRTGGMAFHS-----YFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEA 722
Query: 88 QVNEKLVQLILHEYKIFN--AEVLFRE 112
Q + L + EY + N + VLF+E
Sbjct: 723 QWHSSLARTSSAEYNVNNLVSPVLFQE 749
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 28 KKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTCPLT 87
K+ +++ K+ + GGIAF+S E + +L + + + K +++ P
Sbjct: 666 KREDVFVKEVRTGGIAFHS-----YFMESIAPTLLRQLRKVILDPKPRSKRWLSTSIPEA 720
Query: 88 QVNEKLVQLILHEYKIFN--AEVLFRE 112
Q L + EY + N + VLF+E
Sbjct: 721 QWQGSLARTFSAEYSVNNLVSPVLFQE 747
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 44 FNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHE--Y 101
F+ T T +NEK+++ + Y++ + + G N+T P+ L++LI ++
Sbjct: 370 FDLTVATTGLNEKILKRLNIPYEVVHVQANSHAGYYPNAT-PV------LIKLIFNKDSG 422
Query: 102 KIFNAEVLFRE--DCNADELIDVINANRVYL 130
KI+ A+ L R+ D D + I AN L
Sbjct: 423 KIYGAQTLGRDGVDKRXDVIATAIKANLTVL 453
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,186,608
Number of Sequences: 62578
Number of extensions: 151092
Number of successful extensions: 415
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 7
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)