Query psy7060
Match_columns 160
No_of_seqs 117 out of 303
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 17:07:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a9a_A Ribosome-interacting GT 99.9 7.4E-22 2.5E-26 170.0 14.3 124 1-160 156-280 (376)
2 1wxq_A GTP-binding protein; st 98.6 2.4E-09 8.3E-14 91.5 -0.7 116 7-160 127-250 (397)
3 2ohf_A Protein OLA1, GTP-bindi 88.8 0.097 3.3E-06 45.5 0.5 43 93-139 188-232 (396)
4 3t1o_A Gliding protein MGLA; G 88.3 0.87 3E-05 31.7 5.1 28 127-154 133-163 (198)
5 1ky3_A GTP-binding protein YPT 86.8 0.9 3.1E-05 31.2 4.4 25 128-152 117-147 (182)
6 1m7b_A RND3/RHOE small GTP-bin 85.6 0.45 1.5E-05 33.8 2.4 15 128-142 110-124 (184)
7 2iwr_A Centaurin gamma 1; ANK 84.5 1.3 4.6E-05 30.6 4.4 25 128-152 107-138 (178)
8 4dhe_A Probable GTP-binding pr 84.2 1 3.5E-05 32.6 3.8 27 119-147 136-162 (223)
9 3reg_A RHO-like small GTPase; 84.0 1.1 3.6E-05 32.0 3.8 34 119-152 117-157 (194)
10 2hup_A RAS-related protein RAB 83.9 1 3.5E-05 32.8 3.8 26 128-153 133-163 (201)
11 3ihw_A Centg3; RAS, centaurin, 83.9 1.5 5.2E-05 31.5 4.6 26 128-153 118-150 (184)
12 1c1y_A RAS-related protein RAP 83.8 0.91 3.1E-05 30.7 3.2 25 128-152 107-136 (167)
13 3cbq_A GTP-binding protein REM 83.7 1.2 4E-05 32.6 4.0 26 128-153 129-159 (195)
14 2atx_A Small GTP binding prote 83.5 1.1 3.7E-05 31.8 3.7 24 120-143 113-136 (194)
15 3t5d_A Septin-7; GTP-binding p 83.2 0.84 2.9E-05 35.6 3.2 21 129-149 144-164 (274)
16 1m2o_B GTP-binding protein SAR 83.1 1.2 4.1E-05 32.1 3.8 26 128-153 123-151 (190)
17 3pqc_A Probable GTP-binding pr 82.8 0.64 2.2E-05 32.4 2.2 17 129-145 133-149 (195)
18 2efe_B Small GTP-binding prote 82.6 1.1 3.7E-05 31.0 3.2 26 129-154 117-147 (181)
19 4bas_A ADP-ribosylation factor 82.5 0.92 3.2E-05 32.0 2.9 16 129-144 127-142 (199)
20 3q85_A GTP-binding protein REM 82.5 1.7 5.8E-05 29.7 4.2 26 129-154 109-139 (169)
21 2yc2_C IFT27, small RAB-relate 82.3 1.1 3.8E-05 31.6 3.3 25 128-152 131-161 (208)
22 1wms_A RAB-9, RAB9, RAS-relate 82.0 2.1 7.1E-05 29.4 4.5 25 128-152 115-143 (177)
23 1z2a_A RAS-related protein RAB 81.6 0.9 3.1E-05 30.8 2.5 25 128-152 108-137 (168)
24 3t5g_A GTP-binding protein RHE 81.4 1.3 4.3E-05 30.9 3.3 27 128-154 110-141 (181)
25 2e87_A Hypothetical protein PH 81.1 6.7 0.00023 31.9 8.0 21 129-149 280-300 (357)
26 2nzj_A GTP-binding protein REM 80.9 1.5 5.2E-05 29.9 3.5 23 129-151 111-138 (175)
27 1f6b_A SAR1; gtpases, N-termin 80.9 1.7 5.8E-05 31.6 3.9 25 128-152 125-152 (198)
28 2ged_A SR-beta, signal recogni 80.4 0.69 2.4E-05 32.7 1.6 20 129-148 156-175 (193)
29 1z0f_A RAB14, member RAS oncog 80.2 2.1 7.1E-05 29.2 4.0 25 129-153 120-149 (179)
30 1upt_A ARL1, ADP-ribosylation 79.9 0.74 2.5E-05 31.4 1.6 17 128-144 107-123 (171)
31 3tw8_B RAS-related protein RAB 79.8 1.9 6.3E-05 29.6 3.6 25 128-152 112-141 (181)
32 2g6b_A RAS-related protein RAB 79.2 2.2 7.4E-05 29.4 3.9 25 128-152 115-144 (180)
33 4gzl_A RAS-related C3 botulinu 78.7 0.95 3.2E-05 33.1 2.0 24 120-143 125-148 (204)
34 3tkl_A RAS-related protein RAB 78.4 1.7 5.8E-05 30.5 3.2 24 129-152 121-149 (196)
35 1svi_A GTP-binding protein YSX 78.4 1.1 3.8E-05 31.6 2.2 20 128-147 133-152 (195)
36 1wb1_A Translation elongation 78.3 4.7 0.00016 34.9 6.5 57 91-147 84-143 (482)
37 2yv5_A YJEQ protein; hydrolase 78.2 1.7 5.9E-05 35.0 3.6 16 130-145 111-126 (302)
38 1gwn_A RHO-related GTP-binding 78.2 1.3 4.5E-05 32.7 2.6 14 129-142 132-145 (205)
39 2a9k_A RAS-related protein RAL 78.1 1.8 6E-05 29.8 3.1 24 129-152 123-151 (187)
40 3cnl_A YLQF, putative uncharac 78.1 1.1 3.9E-05 35.7 2.4 21 129-149 46-66 (262)
41 3clv_A RAB5 protein, putative; 78.0 2.8 9.7E-05 28.9 4.2 24 130-153 148-175 (208)
42 2oil_A CATX-8, RAS-related pro 78.0 2.2 7.6E-05 30.1 3.7 27 128-154 129-160 (193)
43 2cxx_A Probable GTP-binding pr 78.0 1.4 4.6E-05 30.7 2.5 24 128-151 121-146 (190)
44 3kkq_A RAS-related protein M-R 77.7 3.2 0.00011 28.8 4.4 26 127-152 121-151 (183)
45 3bc1_A RAS-related protein RAB 77.0 2.1 7.2E-05 29.5 3.3 25 128-152 126-155 (195)
46 3q72_A GTP-binding protein RAD 77.0 2.2 7.5E-05 29.0 3.3 25 129-153 106-135 (166)
47 3dz8_A RAS-related protein RAB 77.0 2.6 8.8E-05 30.0 3.8 25 128-152 127-156 (191)
48 2fv8_A H6, RHO-related GTP-bin 76.9 1.9 6.4E-05 31.3 3.1 25 120-144 120-144 (207)
49 3c5c_A RAS-like protein 12; GD 76.9 1.9 6.4E-05 30.9 3.1 25 128-152 126-155 (187)
50 1jwy_B Dynamin A GTPase domain 76.8 3.7 0.00013 31.8 5.0 27 118-146 189-215 (315)
51 1x3s_A RAS-related protein RAB 76.8 4.3 0.00015 28.3 4.9 26 128-153 120-149 (195)
52 2ce2_X GTPase HRAS; signaling 76.6 2.7 9.3E-05 28.0 3.6 24 129-152 108-135 (166)
53 1ksh_A ARF-like protein 2; sma 76.5 1.1 3.6E-05 31.5 1.6 16 129-144 119-134 (186)
54 1moz_A ARL1, ADP-ribosylation 76.3 2.1 7E-05 29.7 3.1 23 128-150 118-143 (183)
55 1z08_A RAS-related protein RAB 76.2 1.7 5.7E-05 29.6 2.5 26 129-154 111-141 (170)
56 4djt_A GTP-binding nuclear pro 76.1 3.6 0.00012 29.7 4.4 25 130-154 118-147 (218)
57 2f7s_A C25KG, RAS-related prot 75.9 2 6.8E-05 31.1 3.0 25 128-152 140-169 (217)
58 2dyk_A GTP-binding protein; GT 75.8 1 3.5E-05 30.4 1.4 25 128-152 107-132 (161)
59 2fn4_A P23, RAS-related protei 75.6 1.3 4.4E-05 30.4 1.8 26 128-153 113-143 (181)
60 3q3j_B RHO-related GTP-binding 75.6 2 6.7E-05 31.8 3.0 23 120-142 122-144 (214)
61 1r8s_A ADP-ribosylation factor 75.6 1.2 4E-05 30.3 1.6 16 129-144 101-116 (164)
62 3gee_A MNME, tRNA modification 75.5 3.1 0.00011 36.3 4.7 32 129-160 343-378 (476)
63 1fzq_A ADP-ribosylation factor 75.3 1.2 4E-05 31.8 1.6 17 128-144 116-132 (181)
64 2x77_A ADP-ribosylation factor 75.1 1.2 4.1E-05 31.4 1.6 16 129-144 123-138 (189)
65 2gco_A H9, RHO-related GTP-bin 75.0 2.3 7.8E-05 30.7 3.1 16 129-144 129-144 (201)
66 1puj_A YLQF, conserved hypothe 74.9 1.6 5.4E-05 35.2 2.5 54 92-149 12-70 (282)
67 1vg8_A RAS-related protein RAB 74.4 4.3 0.00015 28.8 4.4 25 128-152 116-144 (207)
68 1u8z_A RAS-related protein RAL 74.2 2.4 8.1E-05 28.4 2.9 24 129-152 109-137 (168)
69 3con_A GTPase NRAS; structural 73.8 3.3 0.00011 29.1 3.6 24 129-152 126-153 (190)
70 1g16_A RAS-related protein SEC 73.4 3.9 0.00013 27.6 3.8 24 129-152 108-135 (170)
71 1zj6_A ADP-ribosylation factor 73.4 2.6 8.9E-05 29.7 3.0 23 128-150 116-141 (187)
72 2bme_A RAB4A, RAS-related prot 73.3 2.3 7.9E-05 29.6 2.7 27 128-154 114-145 (186)
73 1z0j_A RAB-22, RAS-related pro 73.2 3 0.0001 28.2 3.2 26 127-152 109-139 (170)
74 2gf9_A RAS-related protein RAB 73.1 2.8 9.7E-05 29.6 3.2 24 129-152 127-155 (189)
75 1z06_A RAS-related protein RAB 73.0 4.4 0.00015 28.6 4.2 25 129-153 127-156 (189)
76 2g3y_A GTP-binding protein GEM 72.7 9.7 0.00033 28.9 6.3 42 101-142 109-158 (211)
77 1r2q_A RAS-related protein RAB 72.6 3.6 0.00012 27.7 3.5 26 128-153 110-140 (170)
78 2h17_A ADP-ribosylation factor 72.5 2.8 9.5E-05 29.5 3.0 23 128-150 121-146 (181)
79 2b6h_A ADP-ribosylation factor 72.4 1.5 5.2E-05 31.6 1.6 16 129-144 130-145 (192)
80 2h57_A ADP-ribosylation factor 71.8 2.8 9.6E-05 29.6 2.9 24 128-151 125-151 (190)
81 1lnz_A SPO0B-associated GTP-bi 71.7 1.7 5.8E-05 36.3 2.0 23 128-150 273-296 (342)
82 1zd9_A ADP-ribosylation factor 71.6 1.6 5.6E-05 31.0 1.6 17 128-144 123-139 (188)
83 1mh1_A RAC1; GTP-binding, GTPa 71.3 1.9 6.5E-05 29.8 1.9 15 129-143 109-123 (186)
84 4dsu_A GTPase KRAS, isoform 2B 71.2 3.3 0.00011 28.6 3.1 25 128-152 108-136 (189)
85 2dby_A GTP-binding protein; GD 71.0 0.58 2E-05 39.8 -1.0 46 90-138 186-232 (368)
86 2bov_A RAla, RAS-related prote 70.7 4.7 0.00016 28.4 3.9 24 129-152 119-147 (206)
87 2zej_A Dardarin, leucine-rich 70.6 4.8 0.00017 28.5 3.9 19 129-147 112-130 (184)
88 2q3h_A RAS homolog gene family 70.6 3.1 0.00011 29.5 2.9 15 129-143 124-138 (201)
89 2o52_A RAS-related protein RAB 70.3 3 0.0001 30.1 2.8 26 128-153 129-159 (200)
90 1nrj_B SR-beta, signal recogni 70.2 1.8 6.3E-05 31.3 1.7 16 129-144 120-135 (218)
91 2fg5_A RAB-22B, RAS-related pr 70.1 3.5 0.00012 29.4 3.1 26 129-154 128-158 (192)
92 2fu5_C RAS-related protein RAB 70.0 3.3 0.00011 28.8 2.9 24 129-152 113-141 (183)
93 1ega_A Protein (GTP-binding pr 70.0 3.9 0.00013 32.8 3.7 15 129-143 116-130 (301)
94 3oes_A GTPase rhebl1; small GT 69.3 5.7 0.00019 28.5 4.1 24 129-152 129-157 (201)
95 2fh5_B SR-beta, signal recogni 68.8 3.9 0.00013 29.4 3.2 17 128-144 114-130 (214)
96 2gf0_A GTP-binding protein DI- 68.8 6.9 0.00024 27.4 4.4 24 128-151 113-140 (199)
97 3gj0_A GTP-binding nuclear pro 68.7 3.3 0.00011 30.2 2.7 15 129-143 119-133 (221)
98 2lkc_A Translation initiation 68.5 15 0.00052 25.0 6.0 16 128-143 106-121 (178)
99 3llu_A RAS-related GTP-binding 68.3 4 0.00014 29.2 3.1 17 128-144 128-144 (196)
100 3bwd_D RAC-like GTP-binding pr 68.3 2.2 7.7E-05 29.4 1.7 15 129-143 112-126 (182)
101 1xzp_A Probable tRNA modificat 67.5 3.6 0.00012 36.1 3.2 63 94-160 314-385 (482)
102 3p32_A Probable GTPase RV1496/ 67.4 3.4 0.00011 33.9 2.9 17 130-146 218-234 (355)
103 3geh_A MNME, tRNA modification 67.3 3.1 0.00011 36.2 2.8 20 130-149 331-350 (462)
104 1u0l_A Probable GTPase ENGC; p 67.3 4.6 0.00016 32.4 3.6 18 129-146 115-132 (301)
105 2ew1_A RAS-related protein RAB 67.1 2.3 8E-05 31.4 1.7 25 128-152 130-159 (201)
106 2hxs_A RAB-26, RAS-related pro 67.1 4.6 0.00016 27.7 3.1 24 129-152 114-143 (178)
107 2bcg_Y Protein YP2, GTP-bindin 67.0 4.7 0.00016 28.8 3.3 24 129-152 113-141 (206)
108 2erx_A GTP-binding protein DI- 66.7 3.7 0.00013 27.7 2.5 15 129-143 109-123 (172)
109 2a5j_A RAS-related protein RAB 66.3 4.6 0.00016 28.6 3.0 24 129-152 126-154 (191)
110 2p67_A LAO/AO transport system 65.7 3.6 0.00012 33.6 2.7 18 130-147 195-212 (341)
111 3cph_A RAS-related protein SEC 65.6 6.9 0.00024 27.8 3.9 24 129-152 125-152 (213)
112 3sjy_A Translation initiation 65.6 8.4 0.00029 32.0 4.9 58 90-147 85-147 (403)
113 2atv_A RERG, RAS-like estrogen 65.6 3.8 0.00013 29.2 2.5 25 128-152 131-160 (196)
114 1zbd_A Rabphilin-3A; G protein 64.8 5.1 0.00017 28.5 3.0 24 129-152 113-141 (203)
115 3iev_A GTP-binding protein ERA 64.8 2.9 0.0001 33.5 2.0 18 128-145 121-139 (308)
116 2wkq_A NPH1-1, RAS-related C3 63.9 3.1 0.00011 31.9 1.9 23 121-143 251-273 (332)
117 2qag_A Septin-2, protein NEDD5 63.9 12 0.00041 30.9 5.6 21 128-148 173-193 (361)
118 1kao_A RAP2A; GTP-binding prot 63.8 1.4 4.7E-05 29.6 -0.1 24 129-152 108-136 (167)
119 2y8e_A RAB-protein 6, GH09086P 63.8 4.4 0.00015 27.6 2.4 23 129-151 119-146 (179)
120 1yrb_A ATP(GTP)binding protein 63.7 3.9 0.00013 30.6 2.4 18 129-146 171-188 (262)
121 3l0i_B RAS-related protein RAB 63.1 2.7 9.1E-05 30.2 1.3 16 129-144 138-153 (199)
122 1h65_A Chloroplast outer envel 63.0 6 0.0002 30.6 3.4 28 118-145 140-170 (270)
123 1t9h_A YLOQ, probable GTPase E 63.0 3.5 0.00012 34.3 2.1 45 102-146 83-134 (307)
124 2il1_A RAB12; G-protein, GDP, 62.9 6.6 0.00023 28.0 3.4 25 129-153 131-160 (192)
125 2qu8_A Putative nucleolar GTP- 62.7 3.7 0.00013 30.4 2.0 26 119-144 132-157 (228)
126 3lvq_E ARF-GAP with SH3 domain 61.7 5.9 0.0002 33.3 3.3 22 129-150 423-447 (497)
127 1wf3_A GTP-binding protein; GT 61.4 3.8 0.00013 33.1 2.1 18 129-146 117-134 (301)
128 3ec1_A YQEH GTPase; atnos1, at 61.3 3.2 0.00011 34.6 1.6 52 89-144 56-113 (369)
129 2p5s_A RAS and EF-hand domain 61.0 5.3 0.00018 28.6 2.6 14 129-142 133-146 (199)
130 3d2o_A UPF0343 protein NGO0387 60.9 5 0.00017 33.4 2.7 41 78-126 141-187 (257)
131 3t34_A Dynamin-related protein 60.7 7.6 0.00026 31.4 3.8 53 91-144 159-218 (360)
132 2j0v_A RAC-like GTP-binding pr 60.6 2.7 9.3E-05 30.2 1.0 15 129-143 113-127 (212)
133 3o47_A ADP-ribosylation factor 60.5 3.4 0.00012 33.6 1.6 16 129-144 266-281 (329)
134 3c5h_A Glucocorticoid receptor 60.4 5.3 0.00018 30.8 2.7 24 129-152 198-224 (255)
135 1ek0_A Protein (GTP-binding pr 60.0 5.8 0.0002 26.6 2.5 15 129-143 108-122 (170)
136 2j1l_A RHO-related GTP-binding 59.5 4.9 0.00017 29.4 2.2 16 129-144 138-153 (214)
137 4dkx_A RAS-related protein RAB 59.5 6.5 0.00022 30.1 3.0 26 129-154 118-148 (216)
138 3cpj_B GTP-binding protein YPT 59.4 5.6 0.00019 29.2 2.5 25 129-153 118-147 (223)
139 2qpt_A EH domain-containing pr 59.2 4.9 0.00017 35.6 2.5 22 129-150 218-239 (550)
140 1ni3_A YCHF GTPase, YCHF GTP-b 58.6 18 0.00061 31.1 5.9 28 112-140 206-235 (392)
141 1pui_A ENGB, probable GTP-bind 58.4 37 0.0013 24.0 6.7 19 127-145 135-153 (210)
142 1ghh_A DINI, DNA-damage-induci 57.8 11 0.00037 26.7 3.7 50 9-64 16-69 (81)
143 2hf9_A Probable hydrogenase ni 57.3 6.7 0.00023 28.5 2.6 14 130-143 165-178 (226)
144 2qtf_A Protein HFLX, GTP-bindi 57.1 15 0.0005 30.7 5.0 16 129-144 292-307 (364)
145 3p26_A Elongation factor 1 alp 56.9 4.4 0.00015 34.7 1.8 52 91-143 122-185 (483)
146 2rcn_A Probable GTPase ENGC; Y 56.7 5.9 0.0002 33.8 2.5 17 130-146 161-177 (358)
147 3def_A T7I23.11 protein; chlor 56.2 7 0.00024 30.1 2.7 19 124-142 146-164 (262)
148 3lxx_A GTPase IMAP family memb 56.0 4.5 0.00015 30.3 1.5 23 126-148 142-164 (239)
149 2wsm_A Hydrogenase expression/ 55.5 6.8 0.00023 28.4 2.4 15 129-143 154-168 (221)
150 1jal_A YCHF protein; nucleotid 55.2 5.2 0.00018 34.2 2.0 45 92-142 166-212 (363)
151 1zun_B Sulfate adenylate trans 55.1 11 0.00038 31.6 3.9 13 131-143 159-171 (434)
152 2cjw_A GTP-binding protein GEM 55.0 9.1 0.00031 27.6 3.0 14 129-142 114-127 (192)
153 3th5_A RAS-related C3 botulinu 58.8 2.7 9.4E-05 30.1 0.0 24 121-144 126-149 (204)
154 3izq_1 HBS1P, elongation facto 53.0 8.8 0.0003 34.5 3.2 52 91-143 256-319 (611)
155 2www_A Methylmalonic aciduria 52.8 7.1 0.00024 32.2 2.4 16 130-145 213-228 (349)
156 3j2k_7 ERF3, eukaryotic polype 52.7 33 0.0011 29.1 6.5 16 128-143 153-169 (439)
157 1s0u_A EIF-2-gamma, translatio 52.3 14 0.00048 30.7 4.1 15 130-144 136-150 (408)
158 4dcu_A GTP-binding protein ENG 52.2 8.2 0.00028 32.6 2.7 14 130-143 307-320 (456)
159 2r5r_A UPF0343 protein NE1163; 52.2 6.4 0.00022 33.1 2.0 41 78-126 151-197 (271)
160 2qag_C Septin-7; cell cycle, c 52.1 17 0.00059 31.3 4.7 28 119-149 160-187 (418)
161 2aka_B Dynamin-1; fusion prote 51.8 4.2 0.00014 31.0 0.8 30 10-39 7-36 (299)
162 3h2y_A GTPase family protein; 51.7 4.2 0.00014 34.0 0.8 52 89-144 54-111 (368)
163 2gj8_A MNME, tRNA modification 51.4 3.1 0.00011 29.5 -0.0 14 129-142 115-128 (172)
164 2x2e_A Dynamin-1; nitration, h 50.2 24 0.00082 28.6 5.1 28 10-37 12-39 (353)
165 1t1v_A SH3BGRL3, SH3 domain-bi 50.1 15 0.00051 24.1 3.2 69 81-150 9-80 (93)
166 1jny_A EF-1-alpha, elongation 49.9 8 0.00027 32.6 2.2 13 131-143 146-158 (435)
167 2qag_B Septin-6, protein NEDD5 49.6 36 0.0012 29.8 6.5 23 128-150 175-197 (427)
168 2f9l_A RAB11B, member RAS onco 49.2 13 0.00043 26.6 3.0 28 129-156 110-142 (199)
169 1mky_A Probable GTP-binding pr 48.5 7.5 0.00026 32.6 1.9 52 90-143 68-124 (439)
170 3cb4_D GTP-binding protein LEP 48.5 24 0.00083 31.9 5.3 16 128-143 122-137 (599)
171 3ha9_A Uncharacterized thiored 47.9 33 0.0011 23.5 4.9 44 89-138 96-139 (165)
172 1kk1_A EIF2gamma; initiation o 47.2 10 0.00036 31.4 2.5 54 91-145 94-153 (410)
173 1zzo_A RV1677; thioredoxin fol 46.0 29 0.001 22.2 4.1 45 90-139 67-111 (136)
174 2dby_A GTP-binding protein; GD 45.2 38 0.0013 28.6 5.7 63 92-160 168-242 (368)
175 3dpu_A RAB family protein; roc 44.6 19 0.00064 30.9 3.8 15 129-143 150-164 (535)
176 3zvr_A Dynamin-1; hydrolase, D 43.6 1.1E+02 0.0039 28.8 9.2 52 92-145 174-233 (772)
177 2ct6_A SH3 domain-binding glut 42.2 17 0.00058 25.0 2.6 58 81-138 15-81 (111)
178 3sop_A Neuronal-specific septi 41.9 20 0.00068 28.5 3.3 21 130-150 141-161 (270)
179 1jal_A YCHF protein; nucleotid 41.6 63 0.0022 27.5 6.6 52 80-137 172-226 (363)
180 2c78_A Elongation factor TU-A; 40.7 16 0.00053 30.3 2.6 50 92-143 87-142 (405)
181 1oix_A RAS-related protein RAB 40.6 19 0.00063 25.9 2.7 29 128-156 133-166 (191)
182 2ywe_A GTP-binding protein LEP 40.4 25 0.00086 31.9 4.1 17 127-143 123-139 (600)
183 3i8s_A Ferrous iron transport 40.2 18 0.0006 28.4 2.7 15 129-143 112-126 (274)
184 3h8q_A Thioredoxin reductase 3 39.9 35 0.0012 23.2 4.0 52 82-137 25-78 (114)
185 2qm8_A GTPase/ATPase; G protei 39.4 21 0.00071 29.3 3.1 15 129-143 193-207 (337)
186 3r7w_A Gtpase1, GTP-binding pr 39.2 20 0.00069 28.5 2.9 15 129-143 115-129 (307)
187 4f8b_A NADPH-dependent 7-cyano 39.1 15 0.0005 29.5 2.1 51 72-125 61-114 (165)
188 2wji_A Ferrous iron transport 39.1 6.4 0.00022 27.4 -0.0 14 129-142 108-121 (165)
189 2lqo_A Putative glutaredoxin R 37.7 49 0.0017 22.5 4.4 64 81-148 11-76 (92)
190 2elf_A Protein translation elo 37.1 18 0.00061 30.2 2.4 53 92-147 72-130 (370)
191 1f60_A Elongation factor EEF1A 36.9 37 0.0013 28.9 4.4 51 91-142 96-158 (458)
192 3qq5_A Small GTP-binding prote 36.7 10 0.00035 32.7 0.9 50 93-145 103-156 (423)
193 2xtp_A GTPase IMAP family memb 36.5 93 0.0032 23.3 6.2 21 123-143 132-153 (260)
194 3tr5_A RF-3, peptide chain rel 35.2 18 0.00061 32.0 2.2 16 129-144 134-149 (528)
195 2wjg_A FEOB, ferrous iron tran 34.9 8.1 0.00028 26.9 -0.0 15 129-143 112-126 (188)
196 3ctg_A Glutaredoxin-2; reduced 34.1 61 0.0021 22.8 4.6 85 40-137 12-102 (129)
197 1aba_A Glutaredoxin; electron 33.4 44 0.0015 21.3 3.4 48 83-135 13-70 (87)
198 3szr_A Interferon-induced GTP- 32.9 61 0.0021 28.8 5.3 58 86-145 165-230 (608)
199 3b1v_A Ferrous iron uptake tra 32.9 11 0.00039 29.9 0.6 14 129-142 107-120 (272)
200 3or5_A Thiol:disulfide interch 32.7 60 0.002 21.8 4.2 44 90-138 78-125 (165)
201 4evm_A Thioredoxin family prot 32.2 59 0.002 20.5 3.9 47 87-138 67-113 (138)
202 1r5b_A Eukaryotic peptide chai 32.1 30 0.001 29.5 3.1 52 91-143 132-195 (467)
203 3rhb_A ATGRXC5, glutaredoxin-C 32.0 39 0.0013 22.5 3.1 54 81-138 26-82 (113)
204 3gwb_A Peptidase M16 inactive 32.0 83 0.0029 24.7 5.4 39 86-124 176-215 (434)
205 2hjg_A GTP-binding protein ENG 31.9 19 0.00063 30.2 1.7 17 128-144 110-126 (436)
206 1d2e_A Elongation factor TU (E 31.6 92 0.0031 25.7 5.8 50 91-143 77-133 (397)
207 1lu4_A Soluble secreted antige 31.5 68 0.0023 20.6 4.1 43 90-138 66-108 (136)
208 2j69_A Bacterial dynamin-like 31.2 15 0.00051 33.4 1.1 16 129-144 230-245 (695)
209 2hjg_A GTP-binding protein ENG 31.0 18 0.0006 30.3 1.4 16 129-144 286-301 (436)
210 3hcz_A Possible thiol-disulfid 30.5 1E+02 0.0036 20.0 5.0 48 90-140 75-122 (148)
211 3mca_A HBS1, elongation factor 30.0 24 0.00083 31.4 2.2 15 129-143 314-329 (592)
212 2k8s_A Thioredoxin; dimer, str 29.5 25 0.00085 21.9 1.6 53 81-135 9-61 (80)
213 1udx_A The GTP-binding protein 29.1 35 0.0012 29.3 3.0 22 129-150 269-290 (416)
214 2eel_A Cell death activator CI 28.3 22 0.00075 25.7 1.4 58 65-129 12-74 (91)
215 1mky_A Probable GTP-binding pr 28.2 20 0.0007 30.0 1.3 17 128-144 291-307 (439)
216 2h5e_A Peptide chain release f 27.6 29 0.00098 30.6 2.2 16 129-144 134-149 (529)
217 1zma_A Bacterocin transport ac 26.9 49 0.0017 21.5 2.8 57 81-137 38-95 (118)
218 1zo1_I IF2, translation initia 26.9 28 0.00096 30.9 2.0 15 129-143 103-117 (501)
219 3cx5_A Cytochrome B-C1 complex 26.5 85 0.0029 24.5 4.6 39 87-125 160-199 (431)
220 1g7s_A Translation initiation 26.4 23 0.00079 31.9 1.4 16 128-143 121-136 (594)
221 3vqt_A RF-3, peptide chain rel 26.3 31 0.0011 30.5 2.2 47 94-144 117-167 (548)
222 3iby_A Ferrous iron transport 26.0 14 0.00048 28.9 -0.0 15 129-143 110-124 (256)
223 2ld7_A Histone deacetylase com 25.4 83 0.0028 22.7 4.0 39 82-125 20-58 (94)
224 3ipz_A Monothiol glutaredoxin- 25.3 83 0.0028 21.3 3.8 51 83-138 32-82 (109)
225 3r7w_B Gtpase2, GTP-binding pr 25.2 43 0.0015 28.4 2.8 17 129-145 106-122 (331)
226 4dcu_A GTP-binding protein ENG 24.9 42 0.0014 28.2 2.7 24 119-144 123-146 (456)
227 3a1s_A Iron(II) transport prot 24.3 16 0.00055 28.5 -0.0 14 129-142 110-123 (258)
228 4fzv_A Putative methyltransfer 24.1 28 0.00096 29.5 1.5 30 73-102 274-304 (359)
229 3qmx_A Glutaredoxin A, glutare 23.8 94 0.0032 20.8 3.9 52 81-136 23-74 (99)
230 3raz_A Thioredoxin-related pro 23.3 1.7E+02 0.0059 19.5 5.3 49 90-139 67-115 (151)
231 3k53_A Ferrous iron transport 22.7 18 0.00061 27.9 -0.0 13 130-142 110-122 (271)
232 1hr6_B Beta-MPP, mitochondrial 22.3 1E+02 0.0034 24.5 4.3 37 88-124 170-207 (443)
233 2wbr_A GW182, gawky, LD47780P; 22.1 65 0.0022 22.7 2.9 61 88-152 18-88 (89)
234 4fzv_A Putative methyltransfer 22.1 82 0.0028 26.7 3.9 28 39-66 276-304 (359)
235 3l9q_A DNA primase large subun 21.9 25 0.00087 28.4 0.7 38 82-127 113-150 (195)
236 2wem_A Glutaredoxin-related pr 21.9 1E+02 0.0034 21.7 3.9 49 83-138 34-85 (118)
237 1whz_A Hypothetical protein; a 21.8 1.6E+02 0.0055 18.7 6.3 31 11-41 7-37 (70)
238 2xex_A Elongation factor G; GT 21.7 42 0.0014 30.5 2.2 16 129-144 127-142 (693)
239 3zyw_A Glutaredoxin-3; metal b 21.5 1.1E+02 0.0036 21.1 3.8 50 82-138 29-80 (111)
240 3gx8_A Monothiol glutaredoxin- 21.5 1.1E+02 0.0037 21.4 3.9 49 83-138 30-83 (121)
241 3ie7_A LIN2199 protein; phosph 21.2 2.9E+02 0.0098 21.3 9.2 137 11-159 67-220 (320)
242 3lgb_A DNA primase large subun 21.2 51 0.0018 26.6 2.4 21 83-103 115-135 (194)
243 3d3y_A Uncharacterized protein 21.0 70 0.0024 24.8 3.1 36 88-123 182-218 (425)
244 1jfu_A Thiol:disulfide interch 20.9 1E+02 0.0034 21.5 3.7 46 91-139 106-153 (186)
245 1pp9_A Ubiquinol-cytochrome C 20.8 1.1E+02 0.0038 24.5 4.3 36 89-124 177-213 (446)
246 3qrx_A Centrin; calcium-bindin 20.6 1E+02 0.0035 20.6 3.5 35 89-128 134-168 (169)
247 1pp9_B Ubiquinol-cytochrome C 20.3 1.8E+02 0.0063 22.7 5.4 39 85-124 182-221 (439)
248 3ngf_A AP endonuclease, family 20.0 1.6E+02 0.0053 22.1 4.8 58 78-135 12-69 (269)
249 3amj_B Zinc peptidase inactive 20.0 1.1E+02 0.0037 24.0 4.0 37 88-124 171-208 (424)
No 1
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.87 E-value=7.4e-22 Score=170.01 Aligned_cols=124 Identities=45% Similarity=0.786 Sum_probs=117.4
Q ss_pred CCCCCCchHHHHHHHHHHHhcCceeccCCCCeEEEEecCcceEEecccCCchhhHHHHHHHHHHhhhhhhHHhhhcCccc
Q psy7060 1 MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAF 80 (160)
Q Consensus 1 vLDa~k~~~q~~~le~ELe~~GIrLnkk~p~I~ikkk~~GGI~i~~t~~lt~~~~~~v~~~l~~yki~n~~~~~~~~~~~ 80 (160)
|+|++.+..+...+++||+..|++|+++|+.+.++++++||+.+..+.++++
T Consensus 156 vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~---------------------------- 207 (376)
T 4a9a_A 156 ILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTH---------------------------- 207 (376)
T ss_dssp EEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSS----------------------------
T ss_pred ccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhh----------------------------
Confidence 5799988889999999999999999999999999999999999988777765
Q ss_pred cccCCCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHh-cCcceeceEEEEecCCCCCHHHHHHHhcCCCceee
Q psy7060 81 NSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVIN-ANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159 (160)
Q Consensus 81 ~~~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~-~nrvY~P~iyv~NKiD~is~eevd~i~~~p~~v~i 159 (160)
+++++++.++++|+++|+.++++++++.||++|++. ++|.|+||++++||+|+.++|+++.+.+.|+.+++
T Consensus 208 --------l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d~~~~~~~~~~p~i~v~nKid~~~~eele~l~~~~~~~~i 279 (376)
T 4a9a_A 208 --------LGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDSLSIEELELLYRIPNAVPI 279 (376)
T ss_dssp --------CCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHTTTTCEEECEEEEEECGGGSCHHHHHHHTTSTTEEEC
T ss_pred --------ccHHHHHHHHHHhcccCCCeeecccCCHHHHHHHHHHHHhhccceEEEEecccccCHHHHHHHhcccchhhh
Confidence 999999999999999999999999999999999996 69999999999999999999999999999999988
Q ss_pred C
Q psy7060 160 R 160 (160)
Q Consensus 160 s 160 (160)
|
T Consensus 280 s 280 (376)
T 4a9a_A 280 S 280 (376)
T ss_dssp C
T ss_pred h
Confidence 6
No 2
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.64 E-value=2.4e-09 Score=91.55 Aligned_cols=116 Identities=25% Similarity=0.292 Sum_probs=85.2
Q ss_pred chHHHHHHHHHHHhc--CceeccCCCCeEEEEecCcceEEecccCCchhhHHHHHHHHHHhhhhhhHHhhhcCccccccC
Q psy7060 7 QDVQRGLLEKELESV--GIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTC 84 (160)
Q Consensus 7 ~~~q~~~le~ELe~~--GIrLnkk~p~I~ikkk~~GGI~i~~t~~lt~~~~~~v~~~l~~yki~n~~~~~~~~~~~~~~~ 84 (160)
+..+...++.||... |+ +++..+++. ++.++||+.+..... +.-+|
T Consensus 127 p~~d~~~i~~EL~~~d~~~-l~~~~~~~~-k~~~~~~~~~~~~~~----------------------~~l~g-------- 174 (397)
T 1wxq_A 127 PVEDIEFLEREIDYWIYGI-LSKGWDKFA-KRIKLQKIKLESAIA----------------------EHLSG-------- 174 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHTTTHHHH-STTTSSCCCHHHHHH----------------------HHTGG--------
T ss_pred cHHHHHHHHHHHHHHHHHH-HhhhHHHHH-HHHhhcCccHHHHHH----------------------HHhcc--------
Confidence 355788899999766 77 888888887 555556654322111 11111
Q ss_pred CCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcce-eceEEEEecCCCCCHHHHHHHhcC----C-Ccee
Q psy7060 85 PLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVY-LPCIYAYNKIDQISIEEVDRIARQ----P-NSVV 158 (160)
Q Consensus 85 ~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY-~P~iyv~NKiD~is~eevd~i~~~----p-~~v~ 158 (160)
.+.+++.++.+|++|+++++ ..+.+.+|+.++....+.+ +|+|||+||+|+.+.+.++.+.+. + ..|+
T Consensus 175 --~~~~~~~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~ 248 (397)
T 1wxq_A 175 --IGVNENDVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLVREEEKRGYIVIP 248 (397)
T ss_dssp --GTCCHHHHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEE
T ss_pred --cCCCHHHHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEE
Confidence 23789999999999999999 5689999999999888887 999999999999877777776332 2 3566
Q ss_pred eC
Q psy7060 159 VR 160 (160)
Q Consensus 159 is 160 (160)
||
T Consensus 249 iS 250 (397)
T 1wxq_A 249 TS 250 (397)
T ss_dssp EC
T ss_pred Ee
Confidence 65
No 3
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=88.76 E-value=0.097 Score=45.54 Aligned_cols=43 Identities=30% Similarity=0.322 Sum_probs=28.6
Q ss_pred HHHHHHHHcCccceEEEeecCCChhHHHHHHhcC--cceeceEEEEecC
Q psy7060 93 LVQLILHEYKIFNAEVLFREDCNADELIDVINAN--RVYLPCIYAYNKI 139 (160)
Q Consensus 93 ~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~n--rvY~P~iyv~NKi 139 (160)
.++..|.+++.. +....+.+.+| ++.|.+. ..++|++|++|+.
T Consensus 188 ~i~~~L~e~~~~---~~~~~~~~~~e-~e~i~~~~llt~KPviy~~Nv~ 232 (396)
T 2ohf_A 188 KVKSWVIDQKKP---VRFYHDWNDKE-IEVLNKHLFLTSKPMVYLVNLS 232 (396)
T ss_dssp HHHHHTTC--CC---GGGCCCCCHHH-HHHHHHHCCGGGSCEEEEEECC
T ss_pred HHHHHHHhcCcc---hhhcccCCHHH-HHHHHHHHHHhCCceEEEEEec
Confidence 367778888431 11134789997 4555654 4889999999997
No 4
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.29 E-value=0.87 Score=31.73 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=21.7
Q ss_pred cceeceEEEEecCCCC---CHHHHHHHhcCC
Q psy7060 127 RVYLPCIYAYNKIDQI---SIEEVDRIARQP 154 (160)
Q Consensus 127 rvY~P~iyv~NKiD~i---s~eevd~i~~~p 154 (160)
..-+|.++|.||+|+. +.+++..+++.-
T Consensus 133 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 133 LDDVPIVIQVNKRDLPDALPVEMVRAVVDPE 163 (198)
T ss_dssp TTSSCEEEEEECTTSTTCCCHHHHHHHHCTT
T ss_pred cCCCCEEEEEEchhcccccCHHHHHHHHHhc
Confidence 3567999999999985 567887776553
No 5
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=86.82 E-value=0.9 Score=31.20 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=19.7
Q ss_pred ceeceEEEEecCCCC------CHHHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQI------SIEEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~i------s~eevd~i~~ 152 (160)
.-+|.++|.||+|+. +.++...+++
T Consensus 117 ~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~ 147 (182)
T 1ky3_A 117 ETFPFVILGNKIDAEESKKIVSEKSAQELAK 147 (182)
T ss_dssp TTCCEEEEEECTTSCGGGCCSCHHHHHHHHH
T ss_pred CCCcEEEEEECCccccccccCCHHHHHHHHH
Confidence 457999999999984 4567777765
No 6
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=85.59 E-value=0.45 Score=33.80 Aligned_cols=15 Identities=13% Similarity=-0.148 Sum_probs=13.0
Q ss_pred ceeceEEEEecCCCC
Q psy7060 128 VYLPCIYAYNKIDQI 142 (160)
Q Consensus 128 vY~P~iyv~NKiD~i 142 (160)
--.|.++|.||+|+.
T Consensus 110 ~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 110 PNTKMLLVGCKSDLR 124 (184)
T ss_dssp TTCEEEEEEECGGGG
T ss_pred CCCCEEEEEEcchhh
Confidence 357999999999985
No 7
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=84.48 E-value=1.3 Score=30.65 Aligned_cols=25 Identities=4% Similarity=-0.161 Sum_probs=19.7
Q ss_pred ceeceEEEEecCCC-------CCHHHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQ-------ISIEEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~-------is~eevd~i~~ 152 (160)
-.+|.++|.||+|+ ++.++...+++
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~ 138 (178)
T 2iwr_A 107 GGLALALVGTQDRISASSPRVVGDARARALXA 138 (178)
T ss_dssp CCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH
T ss_pred CCCCEEEEEECccccccccCcCCHHHHHHHHH
Confidence 36799999999998 35677777754
No 8
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=84.18 E-value=1 Score=32.65 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=19.6
Q ss_pred HHHHHhcCcceeceEEEEecCCCCCHHHH
Q psy7060 119 LIDVINANRVYLPCIYAYNKIDQISIEEV 147 (160)
Q Consensus 119 liDvi~~nrvY~P~iyv~NKiD~is~eev 147 (160)
+.+.+.. ..+|.|+|.||+|+.+.+++
T Consensus 136 ~~~~l~~--~~~p~i~v~nK~Dl~~~~~~ 162 (223)
T 4dhe_A 136 MIEWFAP--TGKPIHSLLTKCDKLTRQES 162 (223)
T ss_dssp HHHHHGG--GCCCEEEEEECGGGSCHHHH
T ss_pred HHHHHHh--cCCCEEEEEeccccCChhhH
Confidence 3444433 45799999999999987653
No 9
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=83.97 E-value=1.1 Score=31.97 Aligned_cols=34 Identities=15% Similarity=0.011 Sum_probs=22.1
Q ss_pred HHHHHhcCcceeceEEEEecCCCC-------CHHHHHHHhc
Q psy7060 119 LIDVINANRVYLPCIYAYNKIDQI-------SIEEVDRIAR 152 (160)
Q Consensus 119 liDvi~~nrvY~P~iyv~NKiD~i-------s~eevd~i~~ 152 (160)
++..+....--+|.++|.||+|+. +.++...+++
T Consensus 117 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 157 (194)
T 3reg_A 117 WEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ 157 (194)
T ss_dssp HHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHH
Confidence 333444333348999999999985 3466666644
No 10
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=83.92 E-value=1 Score=32.77 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=19.6
Q ss_pred ceeceEEEEecCCCC-----CHHHHHHHhcC
Q psy7060 128 VYLPCIYAYNKIDQI-----SIEEVDRIARQ 153 (160)
Q Consensus 128 vY~P~iyv~NKiD~i-----s~eevd~i~~~ 153 (160)
.-+|.++|.||+|+. +.+++..+++.
T Consensus 133 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 163 (201)
T 2hup_A 133 SNIVQLLIGNKSDLSELREVSLAEAQSLAEH 163 (201)
T ss_dssp TTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCccccccccCHHHHHHHHHH
Confidence 347999999999985 45677777543
No 11
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=83.89 E-value=1.5 Score=31.52 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=20.6
Q ss_pred ceeceEEEEecCCC-------CCHHHHHHHhcC
Q psy7060 128 VYLPCIYAYNKIDQ-------ISIEEVDRIARQ 153 (160)
Q Consensus 128 vY~P~iyv~NKiD~-------is~eevd~i~~~ 153 (160)
.-+|.++|.||+|+ ++.++...+++.
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~ 150 (184)
T 3ihw_A 118 SEVPMVLVGTQDAISAANPRVIDDSRARKLSTD 150 (184)
T ss_dssp GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccccccCHHHHHHHHHH
Confidence 56899999999998 466777777543
No 12
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=83.75 E-value=0.91 Score=30.72 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=19.0
Q ss_pred ceeceEEEEecCCCC-----CHHHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQI-----SIEEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~i-----s~eevd~i~~ 152 (160)
.-+|.++|.||+|+. +.++...+++
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 136 (167)
T 1c1y_A 107 EDVPMILVGNKCDLEDERVVGKEQGQNLAR 136 (167)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred CCCcEEEEEECccccccccCCHHHHHHHHH
Confidence 358999999999985 3466666654
No 13
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=83.66 E-value=1.2 Score=32.55 Aligned_cols=26 Identities=38% Similarity=0.358 Sum_probs=20.0
Q ss_pred ceeceEEEEecCCCC-----CHHHHHHHhcC
Q psy7060 128 VYLPCIYAYNKIDQI-----SIEEVDRIARQ 153 (160)
Q Consensus 128 vY~P~iyv~NKiD~i-----s~eevd~i~~~ 153 (160)
..+|+|+|.||+|+. +.++...+++.
T Consensus 129 ~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~ 159 (195)
T 3cbq_A 129 HDLPVILVGNKSDLARSREVSLEEGRHLAGT 159 (195)
T ss_dssp SCCCEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred CCCCEEEEeechhccccCCcCHHHHHHHHHH
Confidence 368999999999986 45677777653
No 14
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=83.51 E-value=1.1 Score=31.79 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=16.6
Q ss_pred HHHHhcCcceeceEEEEecCCCCC
Q psy7060 120 IDVINANRVYLPCIYAYNKIDQIS 143 (160)
Q Consensus 120 iDvi~~nrvY~P~iyv~NKiD~is 143 (160)
++.+....--+|.++|.||+|+.+
T Consensus 113 ~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 113 VPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp HHHHHHHSTTCCEEEEEECTTSTT
T ss_pred HHHHHHhCCCCCEEEEEEChhhcc
Confidence 344443223589999999999864
No 15
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=83.19 E-value=0.84 Score=35.61 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=18.2
Q ss_pred eeceEEEEecCCCCCHHHHHH
Q psy7060 129 YLPCIYAYNKIDQISIEEVDR 149 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~eevd~ 149 (160)
.+|.|.|+||+|+.+.+++..
T Consensus 144 ~~pvi~V~nK~D~~~~~e~~~ 164 (274)
T 3t5d_A 144 KVNIIPLIAKADTLTPEECQQ 164 (274)
T ss_dssp TSCEEEEESSGGGSCHHHHHH
T ss_pred cCCEEEEEeccCCCCHHHHHH
Confidence 789999999999998877654
No 16
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=83.07 E-value=1.2 Score=32.14 Aligned_cols=26 Identities=27% Similarity=0.181 Sum_probs=19.7
Q ss_pred ceeceEEEEecCCCC---CHHHHHHHhcC
Q psy7060 128 VYLPCIYAYNKIDQI---SIEEVDRIARQ 153 (160)
Q Consensus 128 vY~P~iyv~NKiD~i---s~eevd~i~~~ 153 (160)
.-+|.++|.||+|+. +.+++....+.
T Consensus 123 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 151 (190)
T 1m2o_B 123 KDVPFVILGNKIDAPNAVSEAELRSALGL 151 (190)
T ss_dssp TTCCEEEEEECTTSTTCCCHHHHHHHTTC
T ss_pred cCCCEEEEEECCCCcCCCCHHHHHHHhCC
Confidence 357999999999996 46777666544
No 17
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=82.83 E-value=0.64 Score=32.45 Aligned_cols=17 Identities=18% Similarity=0.497 Sum_probs=14.5
Q ss_pred eeceEEEEecCCCCCHH
Q psy7060 129 YLPCIYAYNKIDQISIE 145 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~e 145 (160)
-+|.++|.||+|+.+.+
T Consensus 133 ~~p~i~v~nK~Dl~~~~ 149 (195)
T 3pqc_A 133 NIPFTIVLTKMDKVKMS 149 (195)
T ss_dssp TCCEEEEEECGGGSCGG
T ss_pred CCCEEEEEEChhcCChH
Confidence 47999999999998653
No 18
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=82.55 E-value=1.1 Score=31.02 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=19.5
Q ss_pred eeceEEEEecCCCCC-----HHHHHHHhcCC
Q psy7060 129 YLPCIYAYNKIDQIS-----IEEVDRIARQP 154 (160)
Q Consensus 129 Y~P~iyv~NKiD~is-----~eevd~i~~~p 154 (160)
-+|.++|.||+|+.+ .+++..+++..
T Consensus 117 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (181)
T 2efe_B 117 NMVMALAGNKSDLLDARKVTAEDAQTYAQEN 147 (181)
T ss_dssp TCEEEEEEECTTCTTTCCSCHHHHHHHHHHT
T ss_pred CCcEEEEEECCcccccccCCHHHHHHHHHHc
Confidence 578999999999863 46677775443
No 19
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=82.51 E-value=0.92 Score=31.97 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=14.4
Q ss_pred eeceEEEEecCCCCCH
Q psy7060 129 YLPCIYAYNKIDQISI 144 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ 144 (160)
-+|.|+|.||+|+.+.
T Consensus 127 ~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 127 RVPFLFFANKMDAAGA 142 (199)
T ss_dssp BCCEEEEEECTTSTTC
T ss_pred CCCEEEEEECcCCCCC
Confidence 6899999999999865
No 20
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=82.48 E-value=1.7 Score=29.66 Aligned_cols=26 Identities=38% Similarity=0.354 Sum_probs=19.4
Q ss_pred eeceEEEEecCCCC-----CHHHHHHHhcCC
Q psy7060 129 YLPCIYAYNKIDQI-----SIEEVDRIARQP 154 (160)
Q Consensus 129 Y~P~iyv~NKiD~i-----s~eevd~i~~~p 154 (160)
-+|.++|.||+|+. +.++...+++..
T Consensus 109 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 139 (169)
T 3q85_A 109 DLPVILVGNKSDLARSREVSLEEGRHLAGTL 139 (169)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHHHHHHHHT
T ss_pred CCCEEEEeeCcchhhcccCCHHHHHHHHHHc
Confidence 58999999999975 446666665443
No 21
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=82.28 E-value=1.1 Score=31.63 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=16.0
Q ss_pred ceeceEEEEecCCCCC------HHHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQIS------IEEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~is------~eevd~i~~ 152 (160)
..+|.++|.||+|+.+ .++...+++
T Consensus 131 ~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~ 161 (208)
T 2yc2_C 131 RPLRAVLVANKTDLPPQRHQVRLDMAQDWAT 161 (208)
T ss_dssp SCCEEEEEEECC-------CCCHHHHHHHHH
T ss_pred cCCcEEEEEECcccchhhccCCHHHHHHHHH
Confidence 4689999999999876 466666653
No 22
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=81.96 E-value=2.1 Score=29.42 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=19.8
Q ss_pred ceeceEEEEecCCCC----CHHHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQI----SIEEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~i----s~eevd~i~~ 152 (160)
.-+|.++|.||+|+. +.+++..+++
T Consensus 115 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~ 143 (177)
T 1wms_A 115 ESFPFVILGNKIDISERQVSTEEAQAWCR 143 (177)
T ss_dssp TTSCEEEEEECTTCSSCSSCHHHHHHHHH
T ss_pred CCCcEEEEEECCcccccccCHHHHHHHHH
Confidence 456999999999985 4577777765
No 23
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=81.64 E-value=0.9 Score=30.80 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=18.6
Q ss_pred ceeceEEEEecCCCCC-----HHHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQIS-----IEEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~is-----~eevd~i~~ 152 (160)
.-.|.++|.||+|+.+ .+++..+++
T Consensus 108 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 137 (168)
T 1z2a_A 108 GDIPTALVQNKIDLLDDSCIKNEEAEGLAK 137 (168)
T ss_dssp CSCCEEEEEECGGGGGGCSSCHHHHHHHHH
T ss_pred CCCCEEEEEECcccCcccccCHHHHHHHHH
Confidence 3579999999999864 466666654
No 24
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=81.36 E-value=1.3 Score=30.87 Aligned_cols=27 Identities=33% Similarity=0.267 Sum_probs=19.4
Q ss_pred ceeceEEEEecCCCC-----CHHHHHHHhcCC
Q psy7060 128 VYLPCIYAYNKIDQI-----SIEEVDRIARQP 154 (160)
Q Consensus 128 vY~P~iyv~NKiD~i-----s~eevd~i~~~p 154 (160)
.-+|.++|.||+|+. +.++...+++.-
T Consensus 110 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 141 (181)
T 3t5g_A 110 VQIPIMLVGNKKDLHMERVISYEEGKALAESW 141 (181)
T ss_dssp --CCEEEEEECTTCTTTCCSCHHHHHHHHHHT
T ss_pred CCCCEEEEEECccchhcceecHHHHHHHHHHh
Confidence 357999999999984 557777775543
No 25
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=81.09 E-value=6.7 Score=31.93 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=17.4
Q ss_pred eeceEEEEecCCCCCHHHHHH
Q psy7060 129 YLPCIYAYNKIDQISIEEVDR 149 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~eevd~ 149 (160)
-+|.|+|.||+|+.+.++++.
T Consensus 280 ~~piilV~NK~Dl~~~~~~~~ 300 (357)
T 2e87_A 280 DLPFLVVINKIDVADEENIKR 300 (357)
T ss_dssp TSCEEEEECCTTTCCHHHHHH
T ss_pred CCCEEEEEECcccCChHHHHH
Confidence 689999999999998766544
No 26
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=80.89 E-value=1.5 Score=29.95 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=16.5
Q ss_pred eeceEEEEecCCCCC-----HHHHHHHh
Q psy7060 129 YLPCIYAYNKIDQIS-----IEEVDRIA 151 (160)
Q Consensus 129 Y~P~iyv~NKiD~is-----~eevd~i~ 151 (160)
-+|.++|.||+|+.+ .++...++
T Consensus 111 ~~piilv~NK~Dl~~~~~v~~~~~~~~~ 138 (175)
T 2nzj_A 111 HVPIILVGNKADLARCREVSVEEGRACA 138 (175)
T ss_dssp -CCEEEEEECTTCTTTCCSCHHHHHHHH
T ss_pred CCCEEEEEEChhhccccccCHHHHHHHH
Confidence 579999999999964 35555544
No 27
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=80.86 E-value=1.7 Score=31.64 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=19.7
Q ss_pred ceeceEEEEecCCCC---CHHHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQI---SIEEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~i---s~eevd~i~~ 152 (160)
.-+|.++|.||+|+. +.+++...++
T Consensus 125 ~~~piilv~NK~Dl~~~~~~~~~~~~~~ 152 (198)
T 1f6b_A 125 ANVPILILGNKIDRPEAISEERLREMFG 152 (198)
T ss_dssp TTSCEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred CCCcEEEEEECCCccccCCHHHHHHHhC
Confidence 458999999999996 5677776654
No 28
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=80.42 E-value=0.69 Score=32.71 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=15.5
Q ss_pred eeceEEEEecCCCCCHHHHH
Q psy7060 129 YLPCIYAYNKIDQISIEEVD 148 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~eevd 148 (160)
-+|.++|.||+|+.+...++
T Consensus 156 ~~p~ilv~nK~Dl~~~~~~~ 175 (193)
T 2ged_A 156 GIDILIACNKSELFTARPPS 175 (193)
T ss_dssp CCCEEEEEECTTSTTCCCHH
T ss_pred CCCEEEEEEchHhcCCCCHH
Confidence 47999999999998653333
No 29
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=80.17 E-value=2.1 Score=29.25 Aligned_cols=25 Identities=28% Similarity=0.213 Sum_probs=18.5
Q ss_pred eeceEEEEecCCCC-----CHHHHHHHhcC
Q psy7060 129 YLPCIYAYNKIDQI-----SIEEVDRIARQ 153 (160)
Q Consensus 129 Y~P~iyv~NKiD~i-----s~eevd~i~~~ 153 (160)
-+|.++|.||+|+. +.++...+++.
T Consensus 120 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (179)
T 1z0f_A 120 NTVIILIGNKADLEAQRDVTYEEAKQFAEE 149 (179)
T ss_dssp TCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 47999999999985 34666666543
No 30
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=79.94 E-value=0.74 Score=31.44 Aligned_cols=17 Identities=18% Similarity=-0.123 Sum_probs=14.4
Q ss_pred ceeceEEEEecCCCCCH
Q psy7060 128 VYLPCIYAYNKIDQISI 144 (160)
Q Consensus 128 vY~P~iyv~NKiD~is~ 144 (160)
.-+|.++|.||+|+.+.
T Consensus 107 ~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 107 RKAILVVFANKQDMEQA 123 (171)
T ss_dssp TTCEEEEEEECTTSTTC
T ss_pred CCCEEEEEEECCCCcCC
Confidence 35799999999999864
No 31
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=79.79 E-value=1.9 Score=29.57 Aligned_cols=25 Identities=24% Similarity=0.088 Sum_probs=17.7
Q ss_pred ceeceEEEEecCCCCC-----HHHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQIS-----IEEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~is-----~eevd~i~~ 152 (160)
--+|.|+|.||+|+.+ .++...+++
T Consensus 112 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 141 (181)
T 3tw8_B 112 DDVCRILVGNKNDDPERKVVETEDAYKFAG 141 (181)
T ss_dssp TTSEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchhcccCHHHHHHHHH
Confidence 3479999999999753 355555543
No 32
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=79.19 E-value=2.2 Score=29.41 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=18.4
Q ss_pred ceeceEEEEecCCCCC-----HHHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQIS-----IEEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~is-----~eevd~i~~ 152 (160)
.-+|.++|.||+|+.+ .++...+++
T Consensus 115 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 144 (180)
T 2g6b_A 115 HDVALMLLGNKVDSAHERVVKREDGEKLAK 144 (180)
T ss_dssp TTCEEEEEEECCSTTSCCCSCHHHHHHHHH
T ss_pred CCCcEEEEEECcccCcccccCHHHHHHHHH
Confidence 3579999999999974 456666643
No 33
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=78.71 E-value=0.95 Score=33.06 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=16.7
Q ss_pred HHHHhcCcceeceEEEEecCCCCC
Q psy7060 120 IDVINANRVYLPCIYAYNKIDQIS 143 (160)
Q Consensus 120 iDvi~~nrvY~P~iyv~NKiD~is 143 (160)
++.+.....-+|.++|.||+|+.+
T Consensus 125 ~~~~~~~~~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 125 YPEVRHHCPNTPIILVGTKLDLRD 148 (204)
T ss_dssp HHHHHHHCSSCCEEEEEECHHHHT
T ss_pred HHHHHHhCCCCCEEEEEechhhcc
Confidence 334443333589999999999864
No 34
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=78.43 E-value=1.7 Score=30.49 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=17.9
Q ss_pred eeceEEEEecCCCCCH-----HHHHHHhc
Q psy7060 129 YLPCIYAYNKIDQISI-----EEVDRIAR 152 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~-----eevd~i~~ 152 (160)
-+|.++|.||+|+.+. ++...+++
T Consensus 121 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 149 (196)
T 3tkl_A 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFAD 149 (196)
T ss_dssp TCEEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred CCCEEEEEECcccccccccCHHHHHHHHH
Confidence 4799999999998743 55565544
No 35
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=78.36 E-value=1.1 Score=31.56 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=16.1
Q ss_pred ceeceEEEEecCCCCCHHHH
Q psy7060 128 VYLPCIYAYNKIDQISIEEV 147 (160)
Q Consensus 128 vY~P~iyv~NKiD~is~eev 147 (160)
.-.|.++|.||+|+.+.+++
T Consensus 133 ~~~p~i~v~nK~Dl~~~~~~ 152 (195)
T 1svi_A 133 YGIPVIVIATKADKIPKGKW 152 (195)
T ss_dssp TTCCEEEEEECGGGSCGGGH
T ss_pred cCCCEEEEEECcccCChHHH
Confidence 34699999999999876444
No 36
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=78.26 E-value=4.7 Score=34.88 Aligned_cols=57 Identities=14% Similarity=0.262 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCccceEEEeecC---CChhHHHHHHhcCcceeceEEEEecCCCCCHHHH
Q psy7060 91 EKLVQLILHEYKIFNAEVLFRED---CNADELIDVINANRVYLPCIYAYNKIDQISIEEV 147 (160)
Q Consensus 91 e~~V~~IL~EYkI~NA~V~ired---~t~DdliDvi~~nrvY~P~iyv~NKiD~is~eev 147 (160)
++..+..+..+.--++-+++-.- +..............-+|.|+|+||+|+.+.++.
T Consensus 84 ~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~ 143 (482)
T 1wb1_A 84 ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEI 143 (482)
T ss_dssp HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHH
T ss_pred HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhH
Confidence 55667777777766666665431 1122222222222344799999999999986443
No 37
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=78.24 E-value=1.7 Score=35.05 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=14.3
Q ss_pred eceEEEEecCCCCCHH
Q psy7060 130 LPCIYAYNKIDQISIE 145 (160)
Q Consensus 130 ~P~iyv~NKiD~is~e 145 (160)
+|.++|+||+|+.+.+
T Consensus 111 ~~~ilV~NK~DL~~~~ 126 (302)
T 2yv5_A 111 VEPVIVFNKIDLLNEE 126 (302)
T ss_dssp CEEEEEECCGGGCCHH
T ss_pred CCEEEEEEcccCCCcc
Confidence 7999999999998765
No 38
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=78.18 E-value=1.3 Score=32.71 Aligned_cols=14 Identities=14% Similarity=-0.116 Sum_probs=12.6
Q ss_pred eeceEEEEecCCCC
Q psy7060 129 YLPCIYAYNKIDQI 142 (160)
Q Consensus 129 Y~P~iyv~NKiD~i 142 (160)
-.|.|+|.||+|+.
T Consensus 132 ~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 132 NTKMLLVGCKSDLR 145 (205)
T ss_dssp TCEEEEEEECGGGG
T ss_pred CCCEEEEEechhhc
Confidence 57999999999985
No 39
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=78.13 E-value=1.8 Score=29.84 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=18.0
Q ss_pred eeceEEEEecCCCCC-----HHHHHHHhc
Q psy7060 129 YLPCIYAYNKIDQIS-----IEEVDRIAR 152 (160)
Q Consensus 129 Y~P~iyv~NKiD~is-----~eevd~i~~ 152 (160)
-+|.++|.||+|+.+ .+++..+++
T Consensus 123 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 151 (187)
T 2a9k_A 123 NVPFLLVGNKSDLEDKRQVSVEEAKNRAE 151 (187)
T ss_dssp TCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred CCCEEEEEECccccccCccCHHHHHHHHH
Confidence 479999999999753 466666654
No 40
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=78.09 E-value=1.1 Score=35.65 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=17.1
Q ss_pred eeceEEEEecCCCCCHHHHHH
Q psy7060 129 YLPCIYAYNKIDQISIEEVDR 149 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~eevd~ 149 (160)
=+|.|+|+||+|+.+.++.+.
T Consensus 46 ~k~~iivlNK~DL~~~~~~~~ 66 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKTTKK 66 (262)
T ss_dssp TSEEEEEEECGGGSCHHHHHH
T ss_pred CCCcEEEEECccCCCHHHHHH
Confidence 379999999999998765544
No 41
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=78.02 E-value=2.8 Score=28.85 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=18.0
Q ss_pred eceEEEEecCCCC----CHHHHHHHhcC
Q psy7060 130 LPCIYAYNKIDQI----SIEEVDRIARQ 153 (160)
Q Consensus 130 ~P~iyv~NKiD~i----s~eevd~i~~~ 153 (160)
.|.++|.||+|.. +.+++..+++.
T Consensus 148 ~piilv~NK~D~~~~~~~~~~~~~~~~~ 175 (208)
T 3clv_A 148 YIIILVANKIDKNKFQVDILEVQKYAQD 175 (208)
T ss_dssp CEEEEEEECTTCC-CCSCHHHHHHHHHH
T ss_pred CcEEEEEECCCcccccCCHHHHHHHHHH
Confidence 8999999999942 44777776543
No 42
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=78.00 E-value=2.2 Score=30.15 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=19.8
Q ss_pred ceeceEEEEecCCCCC-----HHHHHHHhcCC
Q psy7060 128 VYLPCIYAYNKIDQIS-----IEEVDRIARQP 154 (160)
Q Consensus 128 vY~P~iyv~NKiD~is-----~eevd~i~~~p 154 (160)
.-+|.++|.||+|+.+ .++...+++..
T Consensus 129 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 160 (193)
T 2oil_A 129 ATIVVMLVGNKSDLSQAREVPTEEARMFAENN 160 (193)
T ss_dssp TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT
T ss_pred CCCeEEEEEECCCcccccccCHHHHHHHHHHc
Confidence 4579999999999864 46666665544
No 43
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=77.95 E-value=1.4 Score=30.74 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=17.9
Q ss_pred ceeceEEEEecCCCCCH--HHHHHHh
Q psy7060 128 VYLPCIYAYNKIDQISI--EEVDRIA 151 (160)
Q Consensus 128 vY~P~iyv~NKiD~is~--eevd~i~ 151 (160)
.-+|.++|.||+|+.+. ++.+.++
T Consensus 121 ~~~piilv~nK~Dl~~~~~~~~~~~~ 146 (190)
T 2cxx_A 121 LDIPTIVAVNKLDKIKNVQEVINFLA 146 (190)
T ss_dssp TTCCEEEEEECGGGCSCHHHHHHHHH
T ss_pred cCCceEEEeehHhccCcHHHHHHHHH
Confidence 35899999999999863 4555553
No 44
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=77.67 E-value=3.2 Score=28.82 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=19.2
Q ss_pred cceeceEEEEecCCCC-----CHHHHHHHhc
Q psy7060 127 RVYLPCIYAYNKIDQI-----SIEEVDRIAR 152 (160)
Q Consensus 127 rvY~P~iyv~NKiD~i-----s~eevd~i~~ 152 (160)
..-+|.++|.||+|+. +.++...+++
T Consensus 121 ~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~ 151 (183)
T 3kkq_A 121 RESFPMILVANKVDLMHLRKVTRDQGKEMAT 151 (183)
T ss_dssp SSCCCEEEEEECTTCSTTCCSCHHHHHHHHH
T ss_pred CCCCcEEEEEECCCchhccCcCHHHHHHHHH
Confidence 4567999999999975 4566666643
No 45
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=77.05 E-value=2.1 Score=29.53 Aligned_cols=25 Identities=24% Similarity=0.117 Sum_probs=18.5
Q ss_pred ceeceEEEEecCCCCC-----HHHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQIS-----IEEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~is-----~eevd~i~~ 152 (160)
.-+|.++|.||+|+.+ .+++..+++
T Consensus 126 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 155 (195)
T 3bc1_A 126 ENPDIVLCGNKSDLEDQRAVKEEEARELAE 155 (195)
T ss_dssp SSCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccccCHHHHHHHHH
Confidence 3579999999999864 466666643
No 46
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=77.04 E-value=2.2 Score=28.99 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=18.2
Q ss_pred eeceEEEEecCCCC-----CHHHHHHHhcC
Q psy7060 129 YLPCIYAYNKIDQI-----SIEEVDRIARQ 153 (160)
Q Consensus 129 Y~P~iyv~NKiD~i-----s~eevd~i~~~ 153 (160)
-+|.++|.||+|+. +.++...+++.
T Consensus 106 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 135 (166)
T 3q72_A 106 DVPIILVGNKSDLVRSREVSVDEGRACAVV 135 (166)
T ss_dssp CCCEEEEEECTTCCSSCCSCHHHHHHHHHH
T ss_pred CCCEEEEEeccccccccccCHHHHHHHHHH
Confidence 47999999999986 34555555543
No 47
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=76.98 E-value=2.6 Score=29.97 Aligned_cols=25 Identities=24% Similarity=0.094 Sum_probs=18.4
Q ss_pred ceeceEEEEecCCCC-----CHHHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQI-----SIEEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~i-----s~eevd~i~~ 152 (160)
.-+|.++|.||+|+. +.++...+++
T Consensus 127 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 156 (191)
T 3dz8_A 127 DNAQVILVGNKCDMEEERVVPTEKGQLLAE 156 (191)
T ss_dssp TTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccccccCHHHHHHHHH
Confidence 467999999999984 4466665544
No 48
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=76.93 E-value=1.9 Score=31.30 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=17.2
Q ss_pred HHHHhcCcceeceEEEEecCCCCCH
Q psy7060 120 IDVINANRVYLPCIYAYNKIDQISI 144 (160)
Q Consensus 120 iDvi~~nrvY~P~iyv~NKiD~is~ 144 (160)
++.+....--+|.++|.||+|+.+.
T Consensus 120 ~~~~~~~~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 120 VPEVKHFCPNVPIILVANKKDLRSD 144 (207)
T ss_dssp HHHHHHHSTTCCEEEEEECGGGGGC
T ss_pred HHHHHHhCCCCCEEEEEEchhhhcc
Confidence 3344333235899999999999754
No 49
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=76.87 E-value=1.9 Score=30.92 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=19.0
Q ss_pred ceeceEEEEecCCCC-----CHHHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQI-----SIEEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~i-----s~eevd~i~~ 152 (160)
.-+|.++|.||+|+. +.++...+++
T Consensus 126 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 155 (187)
T 3c5c_A 126 RSIPALLLGNKLDMAQYRQVTKAEGVALAG 155 (187)
T ss_dssp CCCCEEEEEECGGGGGGCSSCHHHHHHHHH
T ss_pred CCCCEEEEEECcchhhcCccCHHHHHHHHH
Confidence 368999999999984 4566666654
No 50
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=76.80 E-value=3.7 Score=31.79 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=19.0
Q ss_pred HHHHHHhcCcceeceEEEEecCCCCCHHH
Q psy7060 118 ELIDVINANRVYLPCIYAYNKIDQISIEE 146 (160)
Q Consensus 118 dliDvi~~nrvY~P~iyv~NKiD~is~ee 146 (160)
++...+.. .-.|+++|+||+|+.+.++
T Consensus 189 ~i~~~~~~--~~~~~i~v~NK~Dl~~~~~ 215 (315)
T 1jwy_B 189 QLAKEVDP--EGKRTIGVITKLDLMDKGT 215 (315)
T ss_dssp HHHHHHCS--SCSSEEEEEECTTSSCSSC
T ss_pred HHHHHhCC--CCCcEEEEEcCcccCCcch
Confidence 45555543 3469999999999986543
No 51
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=76.77 E-value=4.3 Score=28.26 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=18.8
Q ss_pred ceeceEEEEecCCCC----CHHHHHHHhcC
Q psy7060 128 VYLPCIYAYNKIDQI----SIEEVDRIARQ 153 (160)
Q Consensus 128 vY~P~iyv~NKiD~i----s~eevd~i~~~ 153 (160)
--+|.++|.||+|+. +.++...+++.
T Consensus 120 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 149 (195)
T 1x3s_A 120 NDIVNMLVGNKIDKENREVDRNEGLKFARK 149 (195)
T ss_dssp SCCEEEEEEECTTSSSCCSCHHHHHHHHHH
T ss_pred CCCcEEEEEECCcCcccccCHHHHHHHHHH
Confidence 357999999999984 34666666543
No 52
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=76.56 E-value=2.7 Score=27.97 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=18.1
Q ss_pred eeceEEEEecCCCCC----HHHHHHHhc
Q psy7060 129 YLPCIYAYNKIDQIS----IEEVDRIAR 152 (160)
Q Consensus 129 Y~P~iyv~NKiD~is----~eevd~i~~ 152 (160)
-+|.++|.||+|+.+ .++...+++
T Consensus 108 ~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 135 (166)
T 2ce2_X 108 DVPMVLVGNKSDLAARTVESRQAQDLAR 135 (166)
T ss_dssp CCCEEEEEECTTCSCCCSCHHHHHHHHH
T ss_pred CCcEEEEEEchhhhhcccCHHHHHHHHH
Confidence 479999999999874 456666643
No 53
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=76.52 E-value=1.1 Score=31.55 Aligned_cols=16 Identities=19% Similarity=-0.076 Sum_probs=13.9
Q ss_pred eeceEEEEecCCCCCH
Q psy7060 129 YLPCIYAYNKIDQISI 144 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ 144 (160)
-.|.++|.||+|+.+.
T Consensus 119 ~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 119 GATLLIFANKQDLPGA 134 (186)
T ss_dssp TCEEEEEEECTTSTTC
T ss_pred CCcEEEEEeCccCCCC
Confidence 4899999999999754
No 54
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=76.29 E-value=2.1 Score=29.73 Aligned_cols=23 Identities=26% Similarity=0.114 Sum_probs=17.3
Q ss_pred ceeceEEEEecCCCCC---HHHHHHH
Q psy7060 128 VYLPCIYAYNKIDQIS---IEEVDRI 150 (160)
Q Consensus 128 vY~P~iyv~NKiD~is---~eevd~i 150 (160)
.-.|.++|.||+|+.+ .+++...
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~i~~~ 143 (183)
T 1moz_A 118 QDAALLVFANKQDQPGALSASEVSKE 143 (183)
T ss_dssp SSCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred CCCeEEEEEECCCCCCCCCHHHHHHH
Confidence 4579999999999875 3555544
No 55
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=76.24 E-value=1.7 Score=29.62 Aligned_cols=26 Identities=27% Similarity=0.178 Sum_probs=19.4
Q ss_pred eeceEEEEecCCCCC-----HHHHHHHhcCC
Q psy7060 129 YLPCIYAYNKIDQIS-----IEEVDRIARQP 154 (160)
Q Consensus 129 Y~P~iyv~NKiD~is-----~eevd~i~~~p 154 (160)
-+|.++|.||+|+.+ .++...+++..
T Consensus 111 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 141 (170)
T 1z08_A 111 EICLCIVGNKIDLEKERHVSIQEAESYAESV 141 (170)
T ss_dssp GSEEEEEEECGGGGGGCCSCHHHHHHHHHHT
T ss_pred CCeEEEEEECcccccccccCHHHHHHHHHHc
Confidence 479999999999863 46677765543
No 56
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=76.13 E-value=3.6 Score=29.74 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=17.0
Q ss_pred eceEEEEecCCCCCH-----HHHHHHhcCC
Q psy7060 130 LPCIYAYNKIDQISI-----EEVDRIARQP 154 (160)
Q Consensus 130 ~P~iyv~NKiD~is~-----eevd~i~~~p 154 (160)
+|.++|.||+|+.+. ++...+++..
T Consensus 118 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (218)
T 4djt_A 118 APIVVCANKIDIKNRQKISKKLVMEVLKGK 147 (218)
T ss_dssp SCEEEEEECTTCC----CCHHHHHHHTTTC
T ss_pred CCEEEEEECCCCccccccCHHHHHHHHHHc
Confidence 799999999998743 4455555443
No 57
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=75.87 E-value=2 Score=31.07 Aligned_cols=25 Identities=16% Similarity=0.037 Sum_probs=18.7
Q ss_pred ceeceEEEEecCCCCC-----HHHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQIS-----IEEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~is-----~eevd~i~~ 152 (160)
.-+|.++|.||+|+.+ .++...+++
T Consensus 140 ~~~piilV~NK~Dl~~~~~v~~~~~~~~~~ 169 (217)
T 2f7s_A 140 ENPDIVLIGNKADLPDQREVNERQARELAD 169 (217)
T ss_dssp TCCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred CCCCEEEEEECCccccccccCHHHHHHHHH
Confidence 3579999999999863 466666654
No 58
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=75.83 E-value=1 Score=30.38 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=17.8
Q ss_pred ceeceEEEEecCCCCCH-HHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQISI-EEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~is~-eevd~i~~ 152 (160)
.-+|.++|.||+|+.+. ++...+++
T Consensus 107 ~~~p~ilv~nK~Dl~~~~~~~~~~~~ 132 (161)
T 2dyk_A 107 KGKPVILVATKVDDPKHELYLGPLYG 132 (161)
T ss_dssp HTCCEEEEEECCCSGGGGGGCGGGGG
T ss_pred cCCCEEEEEECcccccchHhHHHHHh
Confidence 45799999999999854 34444443
No 59
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=75.64 E-value=1.3 Score=30.40 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=18.8
Q ss_pred ceeceEEEEecCCCCC-----HHHHHHHhcC
Q psy7060 128 VYLPCIYAYNKIDQIS-----IEEVDRIARQ 153 (160)
Q Consensus 128 vY~P~iyv~NKiD~is-----~eevd~i~~~ 153 (160)
.-+|.++|.||+|+.+ .++...+++.
T Consensus 113 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 143 (181)
T 2fn4_A 113 DDFPVVLVGNKADLESQRQVPRSEASAFGAS 143 (181)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence 3579999999999864 4556666543
No 60
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=75.62 E-value=2 Score=31.77 Aligned_cols=23 Identities=13% Similarity=-0.194 Sum_probs=15.6
Q ss_pred HHHHhcCcceeceEEEEecCCCC
Q psy7060 120 IDVINANRVYLPCIYAYNKIDQI 142 (160)
Q Consensus 120 iDvi~~nrvY~P~iyv~NKiD~i 142 (160)
+..+....--+|.++|.||+|+.
T Consensus 122 ~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 122 RTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp HHHHHHHCTTSEEEEEEECGGGG
T ss_pred HHHHHHhCCCCCEEEEEEChhhc
Confidence 33343332357999999999984
No 61
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=75.57 E-value=1.2 Score=30.30 Aligned_cols=16 Identities=19% Similarity=-0.089 Sum_probs=13.8
Q ss_pred eeceEEEEecCCCCCH
Q psy7060 129 YLPCIYAYNKIDQISI 144 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ 144 (160)
-.|.++|.||+|+.+.
T Consensus 101 ~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 101 DAVLLVFANKQDLPNA 116 (164)
T ss_dssp TCEEEEEEECTTSTTC
T ss_pred CCeEEEEEECcCCcCC
Confidence 4799999999999764
No 62
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=75.51 E-value=3.1 Score=36.30 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=21.7
Q ss_pred eeceEEEEecCCCCCHHHHHH--Hhc--CCCceeeC
Q psy7060 129 YLPCIYAYNKIDQISIEEVDR--IAR--QPNSVVVR 160 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~eevd~--i~~--~p~~v~is 160 (160)
-+|.|+|+||+|+.+...++. +++ .+..+.+|
T Consensus 343 ~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vS 378 (476)
T 3gee_A 343 AAKFLTVANKLDRAANADALIRAIADGTGTEVIGIS 378 (476)
T ss_dssp TSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECB
T ss_pred CCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEE
Confidence 379999999999986654432 444 34556554
No 63
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=75.31 E-value=1.2 Score=31.80 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.3
Q ss_pred ceeceEEEEecCCCCCH
Q psy7060 128 VYLPCIYAYNKIDQISI 144 (160)
Q Consensus 128 vY~P~iyv~NKiD~is~ 144 (160)
.-+|.++|.||+|+.+.
T Consensus 116 ~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 116 SCVPVLIFANKQDLLTA 132 (181)
T ss_dssp TTCCEEEEEECTTSTTC
T ss_pred cCCCEEEEEECcCcccC
Confidence 35799999999999753
No 64
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=75.11 E-value=1.2 Score=31.44 Aligned_cols=16 Identities=19% Similarity=-0.103 Sum_probs=14.1
Q ss_pred eeceEEEEecCCCCCH
Q psy7060 129 YLPCIYAYNKIDQISI 144 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ 144 (160)
-.|.++|.||+|+.+.
T Consensus 123 ~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 123 KSLLLIFANKQDLPDA 138 (189)
T ss_dssp TCEEEEEEECTTSTTC
T ss_pred CCeEEEEEECCCCcCC
Confidence 5799999999999864
No 65
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=75.01 E-value=2.3 Score=30.70 Aligned_cols=16 Identities=31% Similarity=0.189 Sum_probs=13.8
Q ss_pred eeceEEEEecCCCCCH
Q psy7060 129 YLPCIYAYNKIDQISI 144 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ 144 (160)
-+|.++|.||+|+.+.
T Consensus 129 ~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 129 NVPIILVGNKKDLRQD 144 (201)
T ss_dssp TCCEEEEEECGGGTTC
T ss_pred CCCEEEEEecHHhhcC
Confidence 5799999999999754
No 66
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=74.88 E-value=1.6 Score=35.20 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCccceEEEe---ecCCCh-h-HHHHHHhcCcceeceEEEEecCCCCCHHHHHH
Q psy7060 92 KLVQLILHEYKIFNAEVLF---REDCNA-D-ELIDVINANRVYLPCIYAYNKIDQISIEEVDR 149 (160)
Q Consensus 92 ~~V~~IL~EYkI~NA~V~i---red~t~-D-dliDvi~~nrvY~P~iyv~NKiD~is~eevd~ 149 (160)
+..+++++...--.+.+.+ |...+. + ++...+ ++ +|.++|+||+|+.+.++.+.
T Consensus 12 ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-~~---kp~ilVlNK~DL~~~~~~~~ 70 (282)
T 1puj_A 12 KARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-KN---KPRIMLLNKADKADAAVTQQ 70 (282)
T ss_dssp HHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-SS---SCEEEEEECGGGSCHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-CC---CCEEEEEECcccCCHHHHHH
Confidence 3455666655444433333 222232 2 333333 44 69999999999998766544
No 67
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=74.42 E-value=4.3 Score=28.77 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=18.9
Q ss_pred ceeceEEEEecCCCC----CHHHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQI----SIEEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~i----s~eevd~i~~ 152 (160)
.-+|.++|.||+|+. +.++...+++
T Consensus 116 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 144 (207)
T 1vg8_A 116 ENFPFVVLGNKIDLENRQVATKRAQAWCY 144 (207)
T ss_dssp GGSCEEEEEECTTSSCCCSCHHHHHHHHH
T ss_pred CCCcEEEEEECCCCcccccCHHHHHHHHH
Confidence 357999999999986 3466666655
No 68
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=74.24 E-value=2.4 Score=28.42 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=17.8
Q ss_pred eeceEEEEecCCCCC-----HHHHHHHhc
Q psy7060 129 YLPCIYAYNKIDQIS-----IEEVDRIAR 152 (160)
Q Consensus 129 Y~P~iyv~NKiD~is-----~eevd~i~~ 152 (160)
-+|.++|.||+|+.+ .++...+++
T Consensus 109 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 137 (168)
T 1u8z_A 109 NVPFLLVGNKSDLEDKRQVSVEEAKNRAD 137 (168)
T ss_dssp TSCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred CCcEEEEEECccccccCccCHHHHHHHHH
Confidence 479999999999864 456655543
No 69
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=73.82 E-value=3.3 Score=29.08 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=18.5
Q ss_pred eeceEEEEecCCCC----CHHHHHHHhc
Q psy7060 129 YLPCIYAYNKIDQI----SIEEVDRIAR 152 (160)
Q Consensus 129 Y~P~iyv~NKiD~i----s~eevd~i~~ 152 (160)
-+|.++|.||+|+. +.+++..+++
T Consensus 126 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 153 (190)
T 3con_A 126 DVPMVLVGNKCDLPTRTVDTKQAHELAK 153 (190)
T ss_dssp CCCEEEEEECTTCSCCCSCHHHHHHHHH
T ss_pred CCeEEEEEECCcCCcccCCHHHHHHHHH
Confidence 47999999999986 4566666643
No 70
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=73.43 E-value=3.9 Score=27.63 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=17.6
Q ss_pred eeceEEEEecCCCC----CHHHHHHHhc
Q psy7060 129 YLPCIYAYNKIDQI----SIEEVDRIAR 152 (160)
Q Consensus 129 Y~P~iyv~NKiD~i----s~eevd~i~~ 152 (160)
-+|.++|.||+|+. +.++...+++
T Consensus 108 ~~piilv~nK~Dl~~~~~~~~~~~~~~~ 135 (170)
T 1g16_A 108 EAQLLLVGNKSDMETRVVTADQGEALAK 135 (170)
T ss_dssp TCEEEEEEECTTCTTCCSCHHHHHHHHH
T ss_pred CCcEEEEEECccCCcCccCHHHHHHHHH
Confidence 47999999999984 3456666643
No 71
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=73.42 E-value=2.6 Score=29.73 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=17.3
Q ss_pred ceeceEEEEecCCCCC---HHHHHHH
Q psy7060 128 VYLPCIYAYNKIDQIS---IEEVDRI 150 (160)
Q Consensus 128 vY~P~iyv~NKiD~is---~eevd~i 150 (160)
.-.|.++|.||+|+.+ .+++...
T Consensus 116 ~~~piilv~NK~Dl~~~~~~~~i~~~ 141 (187)
T 1zj6_A 116 RKAGLLIFANKQDVKECMTVAEISQF 141 (187)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred CCCeEEEEEECCCCcCCCCHHHHHHH
Confidence 4589999999999975 4555443
No 72
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=73.27 E-value=2.3 Score=29.55 Aligned_cols=27 Identities=26% Similarity=0.195 Sum_probs=18.8
Q ss_pred ceeceEEEEecCCCCC-----HHHHHHHhcCC
Q psy7060 128 VYLPCIYAYNKIDQIS-----IEEVDRIARQP 154 (160)
Q Consensus 128 vY~P~iyv~NKiD~is-----~eevd~i~~~p 154 (160)
.-+|.++|.||+|+.+ .++...+++..
T Consensus 114 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 145 (186)
T 2bme_A 114 QNIVIILCGNKKDLDADREVTFLEASRFAQEN 145 (186)
T ss_dssp TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHHc
Confidence 3579999999999853 35555555433
No 73
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=73.22 E-value=3 Score=28.17 Aligned_cols=26 Identities=19% Similarity=0.057 Sum_probs=18.7
Q ss_pred cceeceEEEEecCCCCC-----HHHHHHHhc
Q psy7060 127 RVYLPCIYAYNKIDQIS-----IEEVDRIAR 152 (160)
Q Consensus 127 rvY~P~iyv~NKiD~is-----~eevd~i~~ 152 (160)
.--+|.++|.||+|+.+ .++...+++
T Consensus 109 ~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~ 139 (170)
T 1z0j_A 109 PPSIVVAIAGNKCDLTDVREVMERDAKDYAD 139 (170)
T ss_dssp CTTSEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred CCCCcEEEEEECCccccccccCHHHHHHHHH
Confidence 34578999999999864 455666544
No 74
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=73.14 E-value=2.8 Score=29.58 Aligned_cols=24 Identities=29% Similarity=0.219 Sum_probs=18.0
Q ss_pred eeceEEEEecCCCCC-----HHHHHHHhc
Q psy7060 129 YLPCIYAYNKIDQIS-----IEEVDRIAR 152 (160)
Q Consensus 129 Y~P~iyv~NKiD~is-----~eevd~i~~ 152 (160)
-+|.++|.||+|+.+ .++...+++
T Consensus 127 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 155 (189)
T 2gf9_A 127 NAQVILVGNKCDLEDERVVPAEDGRRLAD 155 (189)
T ss_dssp TCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred CCCEEEEEECcccccccCCCHHHHHHHHH
Confidence 479999999999864 356666643
No 75
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=73.00 E-value=4.4 Score=28.57 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=18.7
Q ss_pred eeceEEEEecCCCC-----CHHHHHHHhcC
Q psy7060 129 YLPCIYAYNKIDQI-----SIEEVDRIARQ 153 (160)
Q Consensus 129 Y~P~iyv~NKiD~i-----s~eevd~i~~~ 153 (160)
-+|.++|.||+|+. +.++...+++.
T Consensus 127 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 156 (189)
T 1z06_A 127 DIPRILVGNKCDLRSAIQVPTDLAQKFADT 156 (189)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCEEEEEECccccccceeCHHHHHHHHHH
Confidence 47999999999985 34666666543
No 76
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=72.70 E-value=9.7 Score=28.86 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=24.6
Q ss_pred cCccceEEEeecCCCh------hHHHHHHhcC--cceeceEEEEecCCCC
Q psy7060 101 YKIFNAEVLFREDCNA------DELIDVINAN--RVYLPCIYAYNKIDQI 142 (160)
Q Consensus 101 YkI~NA~V~ired~t~------DdliDvi~~n--rvY~P~iyv~NKiD~i 142 (160)
|+.-+|.+++..=.+. +++.+.+... .--+|.|+|.||+|+.
T Consensus 109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 3555677766542222 2233333322 1247999999999985
No 77
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=72.61 E-value=3.6 Score=27.70 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=18.6
Q ss_pred ceeceEEEEecCCCCC-----HHHHHHHhcC
Q psy7060 128 VYLPCIYAYNKIDQIS-----IEEVDRIARQ 153 (160)
Q Consensus 128 vY~P~iyv~NKiD~is-----~eevd~i~~~ 153 (160)
.-+|.++|.||+|+.+ .++...+++.
T Consensus 110 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~ 140 (170)
T 1r2q_A 110 PNIVIALSGNKADLANKRAVDFQEAQSYADD 140 (170)
T ss_dssp TTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCcEEEEEECccCccccccCHHHHHHHHHH
Confidence 3579999999999853 4666666543
No 78
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=72.53 E-value=2.8 Score=29.51 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=17.4
Q ss_pred ceeceEEEEecCCCCC---HHHHHHH
Q psy7060 128 VYLPCIYAYNKIDQIS---IEEVDRI 150 (160)
Q Consensus 128 vY~P~iyv~NKiD~is---~eevd~i 150 (160)
.-+|.++|.||+|+.+ .+++...
T Consensus 121 ~~~piilv~NK~Dl~~~~~~~~i~~~ 146 (181)
T 2h17_A 121 RKAGLLIFANKQDVKECMTVAEISQF 146 (181)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred CCCeEEEEEECCCcccCCCHHHHHHH
Confidence 4589999999999975 4555443
No 79
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=72.38 E-value=1.5 Score=31.64 Aligned_cols=16 Identities=19% Similarity=-0.076 Sum_probs=13.9
Q ss_pred eeceEEEEecCCCCCH
Q psy7060 129 YLPCIYAYNKIDQISI 144 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ 144 (160)
-.|.++|.||+|+.+.
T Consensus 130 ~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 130 DAVLLVFANKQDMPNA 145 (192)
T ss_dssp TCEEEEEEECTTSTTC
T ss_pred CCeEEEEEECCCCCCC
Confidence 4799999999999764
No 80
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=71.78 E-value=2.8 Score=29.64 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=17.8
Q ss_pred ceeceEEEEecCCCCC---HHHHHHHh
Q psy7060 128 VYLPCIYAYNKIDQIS---IEEVDRIA 151 (160)
Q Consensus 128 vY~P~iyv~NKiD~is---~eevd~i~ 151 (160)
.-+|.++|.||+|+.+ .+++....
T Consensus 125 ~~~piilv~nK~Dl~~~~~~~~~~~~~ 151 (190)
T 2h57_A 125 RRIPILFFANKMDLRDAVTSVKVSQLL 151 (190)
T ss_dssp SCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCCeEEEEEeCcCcccCCCHHHHHHHh
Confidence 3589999999999974 35555543
No 81
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=71.71 E-value=1.7 Score=36.32 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=17.7
Q ss_pred ceeceEEEEecCCCCCHH-HHHHH
Q psy7060 128 VYLPCIYAYNKIDQISIE-EVDRI 150 (160)
Q Consensus 128 vY~P~iyv~NKiD~is~e-evd~i 150 (160)
.-+|.++|.||+|+.+.+ +++.+
T Consensus 273 ~~~p~ilV~NK~Dl~~~~e~~~~l 296 (342)
T 1lnz_A 273 TERPQIIVANKMDMPEAAENLEAF 296 (342)
T ss_dssp TTSCBCBEEECTTSTTHHHHHHHH
T ss_pred cCCCEEEEEECccCCCCHHHHHHH
Confidence 357999999999998753 45555
No 82
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=71.63 E-value=1.6 Score=31.02 Aligned_cols=17 Identities=24% Similarity=0.122 Sum_probs=14.2
Q ss_pred ceeceEEEEecCCCCCH
Q psy7060 128 VYLPCIYAYNKIDQISI 144 (160)
Q Consensus 128 vY~P~iyv~NKiD~is~ 144 (160)
.-+|.++|.||+|+.+.
T Consensus 123 ~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 123 QGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp TTCCEEEEEECTTSTTC
T ss_pred CCCCEEEEEECCCCccC
Confidence 45799999999999843
No 83
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=71.30 E-value=1.9 Score=29.75 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=13.2
Q ss_pred eeceEEEEecCCCCC
Q psy7060 129 YLPCIYAYNKIDQIS 143 (160)
Q Consensus 129 Y~P~iyv~NKiD~is 143 (160)
-+|.++|.||+|+.+
T Consensus 109 ~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 109 NTPIILVGTKLDLRD 123 (186)
T ss_dssp TSCEEEEEECHHHHT
T ss_pred CCCEEEEeEcccccc
Confidence 679999999999864
No 84
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=71.19 E-value=3.3 Score=28.60 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=18.4
Q ss_pred ceeceEEEEecCCCC----CHHHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQI----SIEEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~i----s~eevd~i~~ 152 (160)
.-+|.++|.||+|+. +.++...+++
T Consensus 108 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~ 136 (189)
T 4dsu_A 108 EDVPMVLVGNKCDLPSRTVDTKQAQDLAR 136 (189)
T ss_dssp SCCCEEEEEECTTSSSCSSCHHHHHHHHH
T ss_pred CCCcEEEEEECccCcccccCHHHHHHHHH
Confidence 357999999999986 3456666643
No 85
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=71.01 E-value=0.58 Score=39.80 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHcCccce-EEEeecCCChhHHHHHHhcCcceeceEEEEec
Q psy7060 90 NEKLVQLILHEYKIFNA-EVLFREDCNADELIDVINANRVYLPCIYAYNK 138 (160)
Q Consensus 90 ~e~~V~~IL~EYkI~NA-~V~ired~t~DdliDvi~~nrvY~P~iyv~NK 138 (160)
++++ +.+|++|...++ .|++..+++-||++|. +++.|+|++..++|
T Consensus 186 ~~~~-~~~l~~~~~lt~KPvi~v~N~~e~d~~~~--~~n~~~~~v~~~a~ 232 (368)
T 2dby_A 186 SEAV-ARFLKETPLLTAKPVIYVANVAEEDLPDG--RGNPQVEAVRRKAL 232 (368)
T ss_dssp CHHH-HHHHHHSCCGGGSCEEEEEECCGGGTTTC--TTCHHHHHHHHHHH
T ss_pred CHHH-HHHHHHHhhhhcCCeEEeccccHHhhccc--chhhHHHHHHHHHH
Confidence 4444 455666666653 6666666665555543 33456555544443
No 86
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=70.75 E-value=4.7 Score=28.44 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=18.0
Q ss_pred eeceEEEEecCCCCC-----HHHHHHHhc
Q psy7060 129 YLPCIYAYNKIDQIS-----IEEVDRIAR 152 (160)
Q Consensus 129 Y~P~iyv~NKiD~is-----~eevd~i~~ 152 (160)
-+|.++|.||+|+.+ .+++..+++
T Consensus 119 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 147 (206)
T 2bov_A 119 NVPFLLVGNKSDLEDKRQVSVEEAKNRAE 147 (206)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred CCCEEEEEeccCccccccccHHHHHHHHH
Confidence 579999999999864 456665543
No 87
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=70.65 E-value=4.8 Score=28.53 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=15.2
Q ss_pred eeceEEEEecCCCCCHHHH
Q psy7060 129 YLPCIYAYNKIDQISIEEV 147 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~eev 147 (160)
-.|.|+|.||+|+.+...+
T Consensus 112 ~~piilv~nK~Dl~~~~~~ 130 (184)
T 2zej_A 112 SSPVILVGTHLDVSDEKQR 130 (184)
T ss_dssp TCEEEEEEECGGGCCHHHH
T ss_pred CCcEEEEEECCCcccchhh
Confidence 4799999999999875443
No 88
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=70.55 E-value=3.1 Score=29.54 Aligned_cols=15 Identities=20% Similarity=0.100 Sum_probs=13.2
Q ss_pred eeceEEEEecCCCCC
Q psy7060 129 YLPCIYAYNKIDQIS 143 (160)
Q Consensus 129 Y~P~iyv~NKiD~is 143 (160)
-+|.++|.||+|+.+
T Consensus 124 ~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 124 KAPIILVGTQSDLRE 138 (201)
T ss_dssp SSCEEEEEECGGGGG
T ss_pred CCCEEEEEECHhhhh
Confidence 689999999999863
No 89
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=70.25 E-value=3 Score=30.13 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=18.6
Q ss_pred ceeceEEEEecCCCC-----CHHHHHHHhcC
Q psy7060 128 VYLPCIYAYNKIDQI-----SIEEVDRIARQ 153 (160)
Q Consensus 128 vY~P~iyv~NKiD~i-----s~eevd~i~~~ 153 (160)
.-+|.++|.||+|+. +.++...+++.
T Consensus 129 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 159 (200)
T 2o52_A 129 PNIVVILCGNKKDLDPEREVTFLEASRFAQE 159 (200)
T ss_dssp TTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCcEEEEEECCCcccccccCHHHHHHHHHH
Confidence 357999999999985 33566665543
No 90
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=70.25 E-value=1.8 Score=31.29 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=14.0
Q ss_pred eeceEEEEecCCCCCH
Q psy7060 129 YLPCIYAYNKIDQISI 144 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ 144 (160)
-+|.++|.||+|+.+.
T Consensus 120 ~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 120 GIDILIACNKSELFTA 135 (218)
T ss_dssp CCCEEEEEECTTSTTC
T ss_pred CCCEEEEEEchHhccc
Confidence 5799999999999864
No 91
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=70.12 E-value=3.5 Score=29.37 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=19.7
Q ss_pred eeceEEEEecCCCC-----CHHHHHHHhcCC
Q psy7060 129 YLPCIYAYNKIDQI-----SIEEVDRIARQP 154 (160)
Q Consensus 129 Y~P~iyv~NKiD~i-----s~eevd~i~~~p 154 (160)
-+|.++|.||+|+. +.++...+++..
T Consensus 128 ~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~ 158 (192)
T 2fg5_A 128 NIVMAIAGNKCDLSDIREVPLKDAKEYAESI 158 (192)
T ss_dssp TCEEEEEEECGGGGGGCCSCHHHHHHHHHTT
T ss_pred CCcEEEEEECcccccccccCHHHHHHHHHHc
Confidence 47999999999986 356777776543
No 92
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=69.97 E-value=3.3 Score=28.80 Aligned_cols=24 Identities=25% Similarity=0.111 Sum_probs=16.4
Q ss_pred eeceEEEEecCCCC-----CHHHHHHHhc
Q psy7060 129 YLPCIYAYNKIDQI-----SIEEVDRIAR 152 (160)
Q Consensus 129 Y~P~iyv~NKiD~i-----s~eevd~i~~ 152 (160)
-+|.++|.||+|+. +.++...+++
T Consensus 113 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 141 (183)
T 2fu5_C 113 DVEKMILGNKCDVNDKRQVSKERGEKLAL 141 (183)
T ss_dssp TCEEEEEEEC--CCSCCCSCHHHHHHHHH
T ss_pred CCCEEEEEECccCCccCcCCHHHHHHHHH
Confidence 47999999999986 3566666654
No 93
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=69.96 E-value=3.9 Score=32.80 Aligned_cols=15 Identities=40% Similarity=0.631 Sum_probs=13.7
Q ss_pred eeceEEEEecCCCCC
Q psy7060 129 YLPCIYAYNKIDQIS 143 (160)
Q Consensus 129 Y~P~iyv~NKiD~is 143 (160)
-.|.|+++||+|+.+
T Consensus 116 ~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 116 KAPVILAVNKVDNVQ 130 (301)
T ss_dssp SSCEEEEEESTTTCC
T ss_pred CCCEEEEEECcccCc
Confidence 479999999999987
No 94
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=69.28 E-value=5.7 Score=28.47 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=17.5
Q ss_pred eeceEEEEecCCCC-----CHHHHHHHhc
Q psy7060 129 YLPCIYAYNKIDQI-----SIEEVDRIAR 152 (160)
Q Consensus 129 Y~P~iyv~NKiD~i-----s~eevd~i~~ 152 (160)
-+|.++|.||+|+. +.++...+++
T Consensus 129 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 157 (201)
T 3oes_A 129 RVPVVLVGNKADLSPEREVQAVEGKKLAE 157 (201)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred CCCEEEEEECccCccccccCHHHHHHHHH
Confidence 57999999999986 3355555543
No 95
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=68.76 E-value=3.9 Score=29.43 Aligned_cols=17 Identities=24% Similarity=0.030 Sum_probs=14.2
Q ss_pred ceeceEEEEecCCCCCH
Q psy7060 128 VYLPCIYAYNKIDQISI 144 (160)
Q Consensus 128 vY~P~iyv~NKiD~is~ 144 (160)
.-+|.++|.||+|+.+.
T Consensus 114 ~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 114 NSPSLLIACNKQDIAMA 130 (214)
T ss_dssp TCCEEEEEEECTTSTTC
T ss_pred cCCCEEEEEECCCCCCc
Confidence 35799999999999754
No 96
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=68.76 E-value=6.9 Score=27.39 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=17.6
Q ss_pred ceeceEEEEecCCCCC----HHHHHHHh
Q psy7060 128 VYLPCIYAYNKIDQIS----IEEVDRIA 151 (160)
Q Consensus 128 vY~P~iyv~NKiD~is----~eevd~i~ 151 (160)
.-+|.++|.||+|+.. .++...++
T Consensus 113 ~~~piilv~nK~Dl~~~~~~~~~~~~~~ 140 (199)
T 2gf0_A 113 EDIPVMLVGNKCDETQREVDTREAQAVA 140 (199)
T ss_dssp GGSCEEEEEECTTCSSCSSCHHHHHHHH
T ss_pred CCCCEEEEEECccCCccccCHHHHHHHH
Confidence 4579999999999863 35555554
No 97
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=68.67 E-value=3.3 Score=30.22 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=13.3
Q ss_pred eeceEEEEecCCCCC
Q psy7060 129 YLPCIYAYNKIDQIS 143 (160)
Q Consensus 129 Y~P~iyv~NKiD~is 143 (160)
-+|.++|.||+|+.+
T Consensus 119 ~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 119 NIPIVLCGNKVDIKD 133 (221)
T ss_dssp TCCEEEEEECTTSSS
T ss_pred CCCEEEEEECCcccc
Confidence 579999999999874
No 98
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=68.46 E-value=15 Score=25.00 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=13.9
Q ss_pred ceeceEEEEecCCCCC
Q psy7060 128 VYLPCIYAYNKIDQIS 143 (160)
Q Consensus 128 vY~P~iyv~NKiD~is 143 (160)
.-+|.++|.||+|+.+
T Consensus 106 ~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 106 ANVPIIVAINKMDKPE 121 (178)
T ss_dssp GSCCEEEEEETTTSSC
T ss_pred CCCCEEEEEECccCCc
Confidence 3579999999999985
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=68.28 E-value=4 Score=29.24 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=14.3
Q ss_pred ceeceEEEEecCCCCCH
Q psy7060 128 VYLPCIYAYNKIDQISI 144 (160)
Q Consensus 128 vY~P~iyv~NKiD~is~ 144 (160)
--+|.++|.||+|+.+.
T Consensus 128 ~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 128 PDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp TTCEEEEEEECGGGSCH
T ss_pred CCCcEEEEEeccccCch
Confidence 36799999999998763
No 100
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=68.28 E-value=2.2 Score=29.39 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=13.1
Q ss_pred eeceEEEEecCCCCC
Q psy7060 129 YLPCIYAYNKIDQIS 143 (160)
Q Consensus 129 Y~P~iyv~NKiD~is 143 (160)
-+|.++|.||+|+.+
T Consensus 112 ~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 112 GVPIVLVGTKLDLRD 126 (182)
T ss_dssp TCCEEEEEECHHHHT
T ss_pred CCCEEEEEechhhhc
Confidence 589999999999853
No 101
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=67.46 E-value=3.6 Score=36.06 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=33.5
Q ss_pred HHHHHHHcCccceEEEeecC---CChhH--HHHHHhcCcceeceEEEEecCCCCC---HHHHHHHhcC-CCceeeC
Q psy7060 94 VQLILHEYKIFNAEVLFRED---CNADE--LIDVINANRVYLPCIYAYNKIDQIS---IEEVDRIARQ-PNSVVVR 160 (160)
Q Consensus 94 V~~IL~EYkI~NA~V~ired---~t~Dd--liDvi~~nrvY~P~iyv~NKiD~is---~eevd~i~~~-p~~v~is 160 (160)
++..+..|+--++.+++-.- .+.++ +.+.+ . -+|.|+|.||+|+.+ .+++...+.. ...+.+|
T Consensus 314 i~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l-~---~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iS 385 (482)
T 1xzp_A 314 IERTLQEIEKADIVLFVLDASSPLDEEDRKILERI-K---NKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKIS 385 (482)
T ss_dssp HHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH-T---TSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEE
T ss_pred HHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh-c---CCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEE
Confidence 34445555544555554431 23222 33333 1 469999999999974 3555555432 2345554
No 102
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=67.43 E-value=3.4 Score=33.86 Aligned_cols=17 Identities=35% Similarity=0.249 Sum_probs=14.2
Q ss_pred eceEEEEecCCCCCHHH
Q psy7060 130 LPCIYAYNKIDQISIEE 146 (160)
Q Consensus 130 ~P~iyv~NKiD~is~ee 146 (160)
+|.++|+||+|+.+.++
T Consensus 218 ~p~ivVlNK~Dl~~~~~ 234 (355)
T 3p32_A 218 LADIVVVNKADGEHHKE 234 (355)
T ss_dssp GCSEEEEECCCGGGHHH
T ss_pred cCCEEEEECCCCcChhH
Confidence 59999999999986543
No 103
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=67.32 E-value=3.1 Score=36.20 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=16.3
Q ss_pred eceEEEEecCCCCCHHHHHH
Q psy7060 130 LPCIYAYNKIDQISIEEVDR 149 (160)
Q Consensus 130 ~P~iyv~NKiD~is~eevd~ 149 (160)
.|.|+|.||+|+.+..++..
T Consensus 331 ~piivV~NK~Dl~~~~~~~~ 350 (462)
T 3geh_A 331 RPLILVMNKIDLVEKQLITS 350 (462)
T ss_dssp SCEEEEEECTTSSCGGGSTT
T ss_pred CcEEEEEECCCCCcchhhHH
Confidence 59999999999987665543
No 104
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=67.29 E-value=4.6 Score=32.37 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.0
Q ss_pred eeceEEEEecCCCCCHHH
Q psy7060 129 YLPCIYAYNKIDQISIEE 146 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ee 146 (160)
=+|.++|.||+|+.+..+
T Consensus 115 ~~piilv~NK~DL~~~~~ 132 (301)
T 1u0l_A 115 ELETVMVINKMDLYDEDD 132 (301)
T ss_dssp TCEEEEEECCGGGCCHHH
T ss_pred CCCEEEEEeHHHcCCchh
Confidence 379999999999987644
No 105
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=67.13 E-value=2.3 Score=31.35 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=18.4
Q ss_pred ceeceEEEEecCCCC-----CHHHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQI-----SIEEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~i-----s~eevd~i~~ 152 (160)
.-+|.++|.||+|+. +.++...+++
T Consensus 130 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 159 (201)
T 2ew1_A 130 NKVITVLVGNKIDLAERREVSQQRAEEFSE 159 (201)
T ss_dssp TTCEEEEEEECGGGGGGCSSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccccccCHHHHHHHHH
Confidence 357999999999986 3466666654
No 106
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=67.12 E-value=4.6 Score=27.69 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=17.1
Q ss_pred eec-eEEEEecCCCC-----CHHHHHHHhc
Q psy7060 129 YLP-CIYAYNKIDQI-----SIEEVDRIAR 152 (160)
Q Consensus 129 Y~P-~iyv~NKiD~i-----s~eevd~i~~ 152 (160)
-.| .++|.||+|+. +.++...+++
T Consensus 114 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~ 143 (178)
T 2hxs_A 114 TQPLVALVGNKIDLEHMRTIKPEKHLRFCQ 143 (178)
T ss_dssp CCCEEEEEEECGGGGGGCSSCHHHHHHHHH
T ss_pred CCCeEEEEEEccccccccccCHHHHHHHHH
Confidence 356 68999999985 3566666654
No 107
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=66.97 E-value=4.7 Score=28.82 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=17.9
Q ss_pred eeceEEEEecCCCCC-----HHHHHHHhc
Q psy7060 129 YLPCIYAYNKIDQIS-----IEEVDRIAR 152 (160)
Q Consensus 129 Y~P~iyv~NKiD~is-----~eevd~i~~ 152 (160)
-+|.++|.||+|+.+ .++...+++
T Consensus 113 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 141 (206)
T 2bcg_Y 113 TVLKLLVGNKCDLKDKRVVEYDVAKEFAD 141 (206)
T ss_dssp TCEEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCccccccCHHHHHHHHH
Confidence 479999999999874 356666653
No 108
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=66.65 E-value=3.7 Score=27.67 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=13.0
Q ss_pred eeceEEEEecCCCCC
Q psy7060 129 YLPCIYAYNKIDQIS 143 (160)
Q Consensus 129 Y~P~iyv~NKiD~is 143 (160)
-+|.++|.||+|+.+
T Consensus 109 ~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 109 SIPIMLVGNKCDESP 123 (172)
T ss_dssp CCCEEEEEECGGGGG
T ss_pred CCCEEEEEEcccccc
Confidence 479999999999864
No 109
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=66.25 E-value=4.6 Score=28.64 Aligned_cols=24 Identities=33% Similarity=0.220 Sum_probs=18.1
Q ss_pred eeceEEEEecCCCCC-----HHHHHHHhc
Q psy7060 129 YLPCIYAYNKIDQIS-----IEEVDRIAR 152 (160)
Q Consensus 129 Y~P~iyv~NKiD~is-----~eevd~i~~ 152 (160)
-+|.++|.||+|+.+ .++...+++
T Consensus 126 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 154 (191)
T 2a5j_A 126 NMVIMLIGNKSDLESRRDVKREEGEAFAR 154 (191)
T ss_dssp TCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred CCCEEEEEECcccCCccccCHHHHHHHHH
Confidence 579999999999853 466666654
No 110
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=65.71 E-value=3.6 Score=33.58 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=14.8
Q ss_pred eceEEEEecCCCCCHHHH
Q psy7060 130 LPCIYAYNKIDQISIEEV 147 (160)
Q Consensus 130 ~P~iyv~NKiD~is~eev 147 (160)
+|.++|+||+|+.+...+
T Consensus 195 ~p~ivv~NK~Dl~~~~~~ 212 (341)
T 2p67_A 195 VADLIVINKDDGDNHTNV 212 (341)
T ss_dssp HCSEEEECCCCTTCHHHH
T ss_pred ccCEEEEECCCCCChHHH
Confidence 699999999999875443
No 111
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=65.64 E-value=6.9 Score=27.79 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=17.5
Q ss_pred eeceEEEEecCCCC----CHHHHHHHhc
Q psy7060 129 YLPCIYAYNKIDQI----SIEEVDRIAR 152 (160)
Q Consensus 129 Y~P~iyv~NKiD~i----s~eevd~i~~ 152 (160)
-+|.++|.||+|+. +.++...+++
T Consensus 125 ~~piilv~nK~Dl~~~~~~~~~~~~~~~ 152 (213)
T 3cph_A 125 EAQLLLVGNKSDMETRVVTADQGEALAK 152 (213)
T ss_dssp CSEEEEEEECTTCSSCCSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCcccccCHHHHHHHHH
Confidence 47999999999984 3355665543
No 112
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=65.57 E-value=8.4 Score=31.97 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHcCccceEEEeecC---CChhHHHHHHhc-Ccce-eceEEEEecCCCCCHHHH
Q psy7060 90 NEKLVQLILHEYKIFNAEVLFRED---CNADELIDVINA-NRVY-LPCIYAYNKIDQISIEEV 147 (160)
Q Consensus 90 ~e~~V~~IL~EYkI~NA~V~ired---~t~DdliDvi~~-nrvY-~P~iyv~NKiD~is~eev 147 (160)
-++..+..+..+.--++-+++-.- ++..+..+.+.. ...- .|.|+|+||+|+.+.++.
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 147 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEA 147 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHH
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHH
Confidence 356677777777766665555331 223333333221 1111 489999999999987543
No 113
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=65.56 E-value=3.8 Score=29.18 Aligned_cols=25 Identities=28% Similarity=0.220 Sum_probs=18.5
Q ss_pred ceeceEEEEecCCCCC-----HHHHHHHhc
Q psy7060 128 VYLPCIYAYNKIDQIS-----IEEVDRIAR 152 (160)
Q Consensus 128 vY~P~iyv~NKiD~is-----~eevd~i~~ 152 (160)
.-+|.++|.||+|+.+ .++...+++
T Consensus 131 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 160 (196)
T 2atv_A 131 KNVTLILVGNKADLDHSRQVSTEEGEKLAT 160 (196)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 3579999999999854 466666653
No 114
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=64.79 E-value=5.1 Score=28.49 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=17.6
Q ss_pred eeceEEEEecCCCCC-----HHHHHHHhc
Q psy7060 129 YLPCIYAYNKIDQIS-----IEEVDRIAR 152 (160)
Q Consensus 129 Y~P~iyv~NKiD~is-----~eevd~i~~ 152 (160)
-.|.++|.||+|+.+ .++...+++
T Consensus 113 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 141 (203)
T 1zbd_A 113 NAQVLLVGNKCDMEDERVVSSERGRQLAD 141 (203)
T ss_dssp SCEEEEEEECTTCTTSCCSCHHHHHHHHH
T ss_pred CCCEEEEEECcccCcccccCHHHHHHHHH
Confidence 479999999999864 355555543
No 115
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=64.78 E-value=2.9 Score=33.54 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=14.6
Q ss_pred ceeceEEEEecCCCC-CHH
Q psy7060 128 VYLPCIYAYNKIDQI-SIE 145 (160)
Q Consensus 128 vY~P~iyv~NKiD~i-s~e 145 (160)
.-+|.++|+||+|+. +.+
T Consensus 121 ~~~pvilV~NK~Dl~~~~~ 139 (308)
T 3iev_A 121 LNKPVIVVINKIDKIGPAK 139 (308)
T ss_dssp GCCCEEEEEECGGGSSSGG
T ss_pred cCCCEEEEEECccCCCCHH
Confidence 347999999999998 443
No 116
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=63.94 E-value=3.1 Score=31.90 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=16.1
Q ss_pred HHHhcCcceeceEEEEecCCCCC
Q psy7060 121 DVINANRVYLPCIYAYNKIDQIS 143 (160)
Q Consensus 121 Dvi~~nrvY~P~iyv~NKiD~is 143 (160)
+.+.....-+|.++|.||+|+.+
T Consensus 251 ~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 251 PEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp HHHHHHCTTSCEEEEEECHHHHT
T ss_pred HHHHhhCCCCcEEEEEEchhccc
Confidence 34433323689999999999854
No 117
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=63.92 E-value=12 Score=30.95 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=17.0
Q ss_pred ceeceEEEEecCCCCCHHHHH
Q psy7060 128 VYLPCIYAYNKIDQISIEEVD 148 (160)
Q Consensus 128 vY~P~iyv~NKiD~is~eevd 148 (160)
-.+|.|.|.||+|+.+.+++.
T Consensus 173 ~~~piIlV~NK~Dl~~~~ev~ 193 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLKERE 193 (361)
T ss_dssp S-SCEEEEEECCSSSCHHHHH
T ss_pred cCCCEEEEEECCCCCCHHHHH
Confidence 457999999999999876654
No 118
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=63.81 E-value=1.4 Score=29.62 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=17.3
Q ss_pred eeceEEEEecCCCCC-----HHHHHHHhc
Q psy7060 129 YLPCIYAYNKIDQIS-----IEEVDRIAR 152 (160)
Q Consensus 129 Y~P~iyv~NKiD~is-----~eevd~i~~ 152 (160)
-.|.++|.||+|+.+ .++...+++
T Consensus 108 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 136 (167)
T 1kao_A 108 KVPVILVGNKVDLESEREVSSSEGRALAE 136 (167)
T ss_dssp CCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred CCCEEEEEECCcccccccCCHHHHHHHHH
Confidence 579999999999863 345555543
No 119
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=63.80 E-value=4.4 Score=27.61 Aligned_cols=23 Identities=30% Similarity=0.192 Sum_probs=16.6
Q ss_pred eeceEEEEecCCCCC-----HHHHHHHh
Q psy7060 129 YLPCIYAYNKIDQIS-----IEEVDRIA 151 (160)
Q Consensus 129 Y~P~iyv~NKiD~is-----~eevd~i~ 151 (160)
-+|.++|.||+|+.+ .++...++
T Consensus 119 ~~piilv~nK~Dl~~~~~~~~~~~~~~~ 146 (179)
T 2y8e_A 119 DVIIMLVGNKTDLSDKRQVSTEEGERKA 146 (179)
T ss_dssp SSEEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred CCcEEEEEECCcccccCcCCHHHHHHHH
Confidence 479999999999863 34544443
No 120
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=63.66 E-value=3.9 Score=30.58 Aligned_cols=18 Identities=44% Similarity=0.379 Sum_probs=15.1
Q ss_pred eeceEEEEecCCCCCHHH
Q psy7060 129 YLPCIYAYNKIDQISIEE 146 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ee 146 (160)
-+|.++|+||+|+.+.++
T Consensus 171 ~~p~~iv~NK~D~~~~~~ 188 (262)
T 1yrb_A 171 GATTIPALNKVDLLSEEE 188 (262)
T ss_dssp TSCEEEEECCGGGCCHHH
T ss_pred CCCeEEEEeccccccccc
Confidence 479999999999987653
No 121
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=63.12 E-value=2.7 Score=30.19 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=11.8
Q ss_pred eeceEEEEecCCCCCH
Q psy7060 129 YLPCIYAYNKIDQISI 144 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ 144 (160)
-+|.++|.||+|+.+.
T Consensus 138 ~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 138 NVNKLLVGNKCDLTTK 153 (199)
T ss_dssp CSEEEEC-CCSSCC--
T ss_pred CCCEEEEEECccCCcc
Confidence 5799999999998743
No 122
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=63.00 E-value=6 Score=30.57 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=19.6
Q ss_pred HHHHHHh---cCcceeceEEEEecCCCCCHH
Q psy7060 118 ELIDVIN---ANRVYLPCIYAYNKIDQISIE 145 (160)
Q Consensus 118 dliDvi~---~nrvY~P~iyv~NKiD~is~e 145 (160)
+++..+. +.....|.++|.||+|+.+.+
T Consensus 140 ~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 140 LVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 3444443 445568999999999998543
No 123
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=63.00 E-value=3.5 Score=34.29 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=28.7
Q ss_pred CccceEEEe-----e-cCCChhHHHHHHh-cCcceeceEEEEecCCCCCHHH
Q psy7060 102 KIFNAEVLF-----R-EDCNADELIDVIN-ANRVYLPCIYAYNKIDQISIEE 146 (160)
Q Consensus 102 kI~NA~V~i-----r-ed~t~DdliDvi~-~nrvY~P~iyv~NKiD~is~ee 146 (160)
-+-|+++.+ + .+.+.+.+...+- ....=+|.++|+||+|+.+.++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~ 134 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQD 134 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhh
Confidence 477887653 3 4566764444442 1222368999999999997644
No 124
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=62.87 E-value=6.6 Score=28.01 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=19.0
Q ss_pred eeceEEEEecCCCCC-----HHHHHHHhcC
Q psy7060 129 YLPCIYAYNKIDQIS-----IEEVDRIARQ 153 (160)
Q Consensus 129 Y~P~iyv~NKiD~is-----~eevd~i~~~ 153 (160)
-+|.++|.||+|+.+ .++...+++.
T Consensus 131 ~~piilV~NK~Dl~~~~~v~~~~~~~~~~~ 160 (192)
T 2il1_A 131 DAELLLVGNKLDCETDREITRQQGEKFAQQ 160 (192)
T ss_dssp TCEEEEEEECGGGGGGCCSCHHHHHHHHHT
T ss_pred CCcEEEEEECcccccccccCHHHHHHHHHh
Confidence 479999999999863 4666777654
No 125
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=62.65 E-value=3.7 Score=30.38 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=16.8
Q ss_pred HHHHHhcCcceeceEEEEecCCCCCH
Q psy7060 119 LIDVINANRVYLPCIYAYNKIDQISI 144 (160)
Q Consensus 119 liDvi~~nrvY~P~iyv~NKiD~is~ 144 (160)
++..+....--+|.++|.||+|+.+.
T Consensus 132 ~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 132 LFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp HHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred HHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 34444332225799999999999754
No 126
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=61.73 E-value=5.9 Score=33.33 Aligned_cols=22 Identities=18% Similarity=-0.002 Sum_probs=16.6
Q ss_pred eeceEEEEecCCCCC---HHHHHHH
Q psy7060 129 YLPCIYAYNKIDQIS---IEEVDRI 150 (160)
Q Consensus 129 Y~P~iyv~NKiD~is---~eevd~i 150 (160)
-+|.|+|.||+|+.+ .+++...
T Consensus 423 ~~p~ilv~NK~Dl~~~~~~~~~~~~ 447 (497)
T 3lvq_E 423 DAIILIFANKQDLPDAMKPHEIQEK 447 (497)
T ss_dssp TCEEEEEEECCSSSSCCCHHHHHHH
T ss_pred CCcEEEEEECCCCCcCCCHHHHHHH
Confidence 579999999999964 3555544
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=61.42 E-value=3.8 Score=33.07 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.2
Q ss_pred eeceEEEEecCCCCCHHH
Q psy7060 129 YLPCIYAYNKIDQISIEE 146 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ee 146 (160)
-.|.|.|.||+|+.+.++
T Consensus 117 ~~p~ilV~NK~Dl~~~~~ 134 (301)
T 1wf3_A 117 KVPILLVGNKLDAAKYPE 134 (301)
T ss_dssp TSCEEEEEECGGGCSSHH
T ss_pred CCCEEEEEECcccCCchH
Confidence 379999999999986554
No 128
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=61.25 E-value=3.2 Score=34.61 Aligned_cols=52 Identities=21% Similarity=0.093 Sum_probs=30.2
Q ss_pred cCHHHHHHHHHHcCccceEEEeecCCC------hhHHHHHHhcCcceeceEEEEecCCCCCH
Q psy7060 89 VNEKLVQLILHEYKIFNAEVLFREDCN------ADELIDVINANRVYLPCIYAYNKIDQISI 144 (160)
Q Consensus 89 ~~e~~V~~IL~EYkI~NA~V~ired~t------~DdliDvi~~nrvY~P~iyv~NKiD~is~ 144 (160)
++.+..+++|++|.-..+-+++-=|++ ..+|.+.+ + -.|.|+|+||+|+.+.
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l-~---~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA-A---DNPILLVGNKADLLPR 113 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC-T---TSCEEEEEECGGGSCT
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh-C---CCCEEEEEEChhcCCC
Confidence 456778899999844443333333333 22333333 2 2599999999999854
No 129
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=61.04 E-value=5.3 Score=28.60 Aligned_cols=14 Identities=29% Similarity=0.278 Sum_probs=12.0
Q ss_pred eeceEEEEecCCCC
Q psy7060 129 YLPCIYAYNKIDQI 142 (160)
Q Consensus 129 Y~P~iyv~NKiD~i 142 (160)
-+|.++|.||+|+.
T Consensus 133 ~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 133 TVPIMLVGNKADIR 146 (199)
T ss_dssp -CCEEEEEECGGGH
T ss_pred CCCEEEEEECcccc
Confidence 47999999999985
No 130
>3d2o_A UPF0343 protein NGO0387; bimodular tunnel fold, tunneling fold, folate biosynthesis, GTP cyclohydrolase, metalloenzyme, manganese; 2.04A {Neisseria gonorrhoeae} PDB: 3d1t_A
Probab=60.94 E-value=5 Score=33.38 Aligned_cols=41 Identities=24% Similarity=0.494 Sum_probs=31.6
Q ss_pred ccccccCCCcccCHHHHHHHHHHcCccc----eEEEee--cCCChhHHHHHHhcC
Q psy7060 78 IAFNSTCPLTQVNEKLVQLILHEYKIFN----AEVLFR--EDCNADELIDVINAN 126 (160)
Q Consensus 78 ~~~~~~~~~~~~~e~~V~~IL~EYkI~N----A~V~ir--ed~t~DdliDvi~~n 126 (160)
+...|+|| +-+-+.+|+-|| |.|.++ +++.++||||.++..
T Consensus 141 V~~~t~CP--------CS~~is~~~~HnQRs~~~i~v~~~~~~~iedLI~~~E~~ 187 (257)
T 3d2o_A 141 IPVTSLCP--------CSKEISQYGAHNQRSHVTVSLTSDAEVGIEEVIDYVETQ 187 (257)
T ss_dssp EEEEEECH--------HHHHHSSSCCCEEEEEEEEEEEESSCCCHHHHHHHHHTT
T ss_pred EEEEecCC--------CchhhccCCCcCceEEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 56789999 555677999997 444444 568999999999865
No 131
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=60.74 E-value=7.6 Score=31.44 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCccceEEE--eec----CCChhHHHHHHh-cCcceeceEEEEecCCCCCH
Q psy7060 91 EKLVQLILHEYKIFNAEVL--FRE----DCNADELIDVIN-ANRVYLPCIYAYNKIDQISI 144 (160)
Q Consensus 91 e~~V~~IL~EYkI~NA~V~--ire----d~t~DdliDvi~-~nrvY~P~iyv~NKiD~is~ 144 (160)
.+.+..+...| +.+|++. +-. +....+....+. -...-.|+|.|+||+|+.+.
T Consensus 159 ~~~~~~~~~~~-i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 159 VKDIENMVRSY-IEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHHHHHH-HHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCT
T ss_pred HHHHHHHHHHH-hhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCC
Confidence 44566666677 5566522 211 112223233333 23446799999999999854
No 132
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=60.64 E-value=2.7 Score=30.25 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=13.0
Q ss_pred eeceEEEEecCCCCC
Q psy7060 129 YLPCIYAYNKIDQIS 143 (160)
Q Consensus 129 Y~P~iyv~NKiD~is 143 (160)
-+|.++|.||+|+.+
T Consensus 113 ~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 113 NVPIVLVGTKLDLRD 127 (212)
T ss_dssp TCCEEEEEECHHHHT
T ss_pred CCCEEEEEeCHHhhh
Confidence 589999999999853
No 133
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=60.47 E-value=3.4 Score=33.56 Aligned_cols=16 Identities=19% Similarity=-0.089 Sum_probs=14.0
Q ss_pred eeceEEEEecCCCCCH
Q psy7060 129 YLPCIYAYNKIDQISI 144 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ 144 (160)
-+|.|+|.||+|+.+.
T Consensus 266 ~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 266 DAVLLVFANKQDLPNA 281 (329)
T ss_dssp TCEEEEEEECTTSTTC
T ss_pred CCeEEEEEECccCCcc
Confidence 6799999999999854
No 134
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=60.40 E-value=5.3 Score=30.78 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=17.9
Q ss_pred eeceEEEEecCCCCCH---HHHHHHhc
Q psy7060 129 YLPCIYAYNKIDQISI---EEVDRIAR 152 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~---eevd~i~~ 152 (160)
-+|.++|.||+|+.+. ++...+++
T Consensus 198 ~~piilV~NK~Dl~~~~~v~~~~~~~~ 224 (255)
T 3c5h_A 198 KKPIVVVLTKCDEGVERYIRDAHTFAL 224 (255)
T ss_dssp TCCEEEEEECGGGBCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcccccccHHHHHHHHHHH
Confidence 4899999999999764 44455554
No 135
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=59.99 E-value=5.8 Score=26.64 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=12.8
Q ss_pred eeceEEEEecCCCCC
Q psy7060 129 YLPCIYAYNKIDQIS 143 (160)
Q Consensus 129 Y~P~iyv~NKiD~is 143 (160)
-+|.++|.||+|+.+
T Consensus 108 ~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 108 DIIIALVGNKIDXLQ 122 (170)
T ss_dssp TCEEEEEEECGGGGG
T ss_pred CCcEEEEEECCCccc
Confidence 479999999999853
No 136
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=59.54 E-value=4.9 Score=29.41 Aligned_cols=16 Identities=25% Similarity=0.065 Sum_probs=13.6
Q ss_pred eeceEEEEecCCCCCH
Q psy7060 129 YLPCIYAYNKIDQISI 144 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ 144 (160)
-+|.++|.||+|+.+.
T Consensus 138 ~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 138 KVPIIVVGCKTDLRKD 153 (214)
T ss_dssp SCCEEEEEECGGGGSC
T ss_pred CCCEEEEEEChhhhcc
Confidence 4799999999998754
No 137
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=59.49 E-value=6.5 Score=30.12 Aligned_cols=26 Identities=35% Similarity=0.290 Sum_probs=20.0
Q ss_pred eeceEEEEecCCCC-----CHHHHHHHhcCC
Q psy7060 129 YLPCIYAYNKIDQI-----SIEEVDRIARQP 154 (160)
Q Consensus 129 Y~P~iyv~NKiD~i-----s~eevd~i~~~p 154 (160)
-+|.++|.||+|+. +.+|...+|+.-
T Consensus 118 ~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~ 148 (216)
T 4dkx_A 118 DVIIMLVGNKTDLADKRQVSIEEGERKAKEL 148 (216)
T ss_dssp SSEEEEEEECTTCGGGCCSCHHHHHHHHHHH
T ss_pred CCeEEEEeeccchHhcCcccHHHHhhHHHHh
Confidence 36999999999974 567887776543
No 138
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=59.41 E-value=5.6 Score=29.17 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=18.1
Q ss_pred eeceEEEEecCCCC-----CHHHHHHHhcC
Q psy7060 129 YLPCIYAYNKIDQI-----SIEEVDRIARQ 153 (160)
Q Consensus 129 Y~P~iyv~NKiD~i-----s~eevd~i~~~ 153 (160)
-+|.++|.||+|+. +.++...+++.
T Consensus 118 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 147 (223)
T 3cpj_B 118 NVAVGLIGNKSDLAHLRAVPTEESKTFAQE 147 (223)
T ss_dssp -CEEEEEECCGGGGGGCCSCHHHHHHHHHH
T ss_pred CCeEEEEEECcccccccccCHHHHHHHHHH
Confidence 47999999999985 34666666543
No 139
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=59.21 E-value=4.9 Score=35.61 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=19.0
Q ss_pred eeceEEEEecCCCCCHHHHHHH
Q psy7060 129 YLPCIYAYNKIDQISIEEVDRI 150 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~eevd~i 150 (160)
-.|.++|+||+|+.+.+++.++
T Consensus 218 ~~pvilVlNK~Dl~~~~el~~~ 239 (550)
T 2qpt_A 218 EDKIRVVLNKADMVETQQLMRV 239 (550)
T ss_dssp GGGEEEEEECGGGSCHHHHHHH
T ss_pred CCCEEEEEECCCccCHHHHHHH
Confidence 3699999999999998887665
No 140
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=58.56 E-value=18 Score=31.08 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=21.4
Q ss_pred cCCChhHHHHHHh--cCcceeceEEEEecCC
Q psy7060 112 EDCNADELIDVIN--ANRVYLPCIYAYNKID 140 (160)
Q Consensus 112 ed~t~DdliDvi~--~nrvY~P~iyv~NKiD 140 (160)
++.+.+|. +.+. ....+.|++|+.||.|
T Consensus 206 ~~~~~~e~-e~i~~~~~lt~kp~~y~~Nv~e 235 (392)
T 1ni3_A 206 GDWSNREV-EIINSLYLLTAKPVIYLVNMSE 235 (392)
T ss_dssp SCCCHHHH-HHHHTTCCGGGSCEEEEEECCH
T ss_pred CCCCHHHH-HHHHHHhhhccCceEEEEEecc
Confidence 56777754 4544 3578899999999998
No 141
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=58.44 E-value=37 Score=24.02 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=16.0
Q ss_pred cceeceEEEEecCCCCCHH
Q psy7060 127 RVYLPCIYAYNKIDQISIE 145 (160)
Q Consensus 127 rvY~P~iyv~NKiD~is~e 145 (160)
+..+|.+.+.||+|+.|..
T Consensus 135 ~~~~~~~~v~nK~D~~s~~ 153 (210)
T 1pui_A 135 DSNIAVLVLLTKADKLASG 153 (210)
T ss_dssp HTTCCEEEEEECGGGSCHH
T ss_pred HcCCCeEEEEecccCCCch
Confidence 4568999999999999864
No 142
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=57.82 E-value=11 Score=26.69 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCceeccCCCC----eEEEEecCcceEEecccCCchhhHHHHHHHHHH
Q psy7060 9 VQRGLLEKELESVGIRLNKKKPN----IYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHE 64 (160)
Q Consensus 9 ~q~~~le~ELe~~GIrLnkk~p~----I~ikkk~~GGI~i~~t~~lt~~~~~~v~~~l~~ 64 (160)
.-...|+.||.. ||.+..|+ |.+++..+-|+++.+... -+-+.+..+|.+
T Consensus 16 ga~~aL~~EL~k---Rl~~~fpd~~~~V~Vr~~s~n~lsV~g~~k---~dKe~i~eiLqE 69 (81)
T 1ghh_A 16 GAIDALAGELSR---RIQYAFPDNEGHVSVRYAAANNLSVIGATK---EDKQRISEILQE 69 (81)
T ss_dssp THHHHHHHHHHH---HHHHHCSSSCCEEEEEEESSCEEEEESCCH---HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH---HHHhhCCCCCceEEEeecCCCceeecCCCh---hHHHHHHHHHHH
Confidence 457788888886 78888887 677777778999976533 245666666654
No 143
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=57.28 E-value=6.7 Score=28.52 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=11.3
Q ss_pred eceEEEEecCCCCC
Q psy7060 130 LPCIYAYNKIDQIS 143 (160)
Q Consensus 130 ~P~iyv~NKiD~is 143 (160)
.|.++|.||+|+.+
T Consensus 165 ~~~iiv~NK~Dl~~ 178 (226)
T 2hf9_A 165 TADLIVINKIDLAD 178 (226)
T ss_dssp TCSEEEEECGGGHH
T ss_pred cCCEEEEeccccCc
Confidence 35699999999864
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=57.08 E-value=15 Score=30.73 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=14.0
Q ss_pred eeceEEEEecCCCCCH
Q psy7060 129 YLPCIYAYNKIDQISI 144 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ 144 (160)
-+|.|+|.||+|+.+.
T Consensus 292 ~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 292 GKPILVTLNKIDKING 307 (364)
T ss_dssp SCCEEEEEECGGGCCS
T ss_pred CCCEEEEEECCCCCCc
Confidence 4699999999999874
No 145
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=56.88 E-value=4.4 Score=34.65 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCccceEEEeecCCC------------hhHHHHHHhcCcceeceEEEEecCCCCC
Q psy7060 91 EKLVQLILHEYKIFNAEVLFREDCN------------ADELIDVINANRVYLPCIYAYNKIDQIS 143 (160)
Q Consensus 91 e~~V~~IL~EYkI~NA~V~ired~t------------~DdliDvi~~nrvY~P~iyv~NKiD~is 143 (160)
++..+..+..++--++-+++-.--. ..+......... -.|.|+|+||+|+.+
T Consensus 122 ~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 122 RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-IHNLIIAMNKMDNVD 185 (483)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-CCCEEEEEECGGGGT
T ss_pred HHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-CCcEEEEEECcCccc
Confidence 5567777777776666555543211 111222222111 136999999999986
No 146
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=56.65 E-value=5.9 Score=33.77 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=14.9
Q ss_pred eceEEEEecCCCCCHHH
Q psy7060 130 LPCIYAYNKIDQISIEE 146 (160)
Q Consensus 130 ~P~iyv~NKiD~is~ee 146 (160)
+|.++|+||+|+.+.++
T Consensus 161 ~~~iivlNK~DL~~~~~ 177 (358)
T 2rcn_A 161 VEPLIVLNKIDLLDDEG 177 (358)
T ss_dssp CEEEEEEECGGGCCHHH
T ss_pred CCEEEEEECccCCCchh
Confidence 58899999999998765
No 147
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=56.22 E-value=7 Score=30.13 Aligned_cols=19 Identities=0% Similarity=0.053 Sum_probs=15.6
Q ss_pred hcCcceeceEEEEecCCCC
Q psy7060 124 NANRVYLPCIYAYNKIDQI 142 (160)
Q Consensus 124 ~~nrvY~P~iyv~NKiD~i 142 (160)
.+.....|.++|.||+|+.
T Consensus 146 ~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 146 FGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp HCGGGGGGEEEEEECTTCC
T ss_pred hchhhhcCEEEEEeCcccC
Confidence 3556677999999999986
No 148
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=55.97 E-value=4.5 Score=30.35 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=14.1
Q ss_pred CcceeceEEEEecCCCCCHHHHH
Q psy7060 126 NRVYLPCIYAYNKIDQISIEEVD 148 (160)
Q Consensus 126 nrvY~P~iyv~NKiD~is~eevd 148 (160)
.....|.++|.||+|+.+.++++
T Consensus 142 ~~~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 142 ERARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHGGGEEEEEECGGGC------
T ss_pred hhccceEEEEEeCCccCCcccHH
Confidence 34556999999999998654443
No 149
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=55.45 E-value=6.8 Score=28.41 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=12.9
Q ss_pred eeceEEEEecCCCCC
Q psy7060 129 YLPCIYAYNKIDQIS 143 (160)
Q Consensus 129 Y~P~iyv~NKiD~is 143 (160)
-+|.++|+||+|+.+
T Consensus 154 ~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 154 RVADLIVINKVALAE 168 (221)
T ss_dssp HTCSEEEEECGGGHH
T ss_pred hcCCEEEEecccCCc
Confidence 479999999999853
No 150
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=55.17 E-value=5.2 Score=34.18 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCccceEEEeecCCChhHHHHHHhc--CcceeceEEEEecCCCC
Q psy7060 92 KLVQLILHEYKIFNAEVLFREDCNADELIDVINA--NRVYLPCIYAYNKIDQI 142 (160)
Q Consensus 92 ~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~--nrvY~P~iyv~NKiD~i 142 (160)
+.++..|.+.+.... -+.+.+| ...+.+ -..++|.||+.||.|.-
T Consensus 166 ~~~~~~L~~~~~~~~-----~~~~~~e-~~~l~~~~llt~KPvi~v~N~~e~~ 212 (363)
T 1jal_A 166 EKILPVLENAGMIRS-----VGLDKEE-LQAIKSYNFLTLKPTMYIANVNEDG 212 (363)
T ss_dssp HHHHHHHHTTCCGGG-----SCCCHHH-HHHHGGGCCSTTSCEEEEEECCTTC
T ss_pred HHHHHHHhcCCCccc-----cCCCHHH-HHHHHHhhcccCCcEEEEEeccccc
Confidence 456666777654221 2455555 455553 24568999999998854
No 151
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=55.11 E-value=11 Score=31.63 Aligned_cols=13 Identities=31% Similarity=0.302 Sum_probs=11.7
Q ss_pred ceEEEEecCCCCC
Q psy7060 131 PCIYAYNKIDQIS 143 (160)
Q Consensus 131 P~iyv~NKiD~is 143 (160)
|.|+|+||+|+.+
T Consensus 159 ~iIvviNK~Dl~~ 171 (434)
T 1zun_B 159 HIVVAINKMDLNG 171 (434)
T ss_dssp EEEEEEECTTTTT
T ss_pred eEEEEEEcCcCCc
Confidence 5899999999986
No 152
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=55.02 E-value=9.1 Score=27.64 Aligned_cols=14 Identities=36% Similarity=0.430 Sum_probs=12.5
Q ss_pred eeceEEEEecCCCC
Q psy7060 129 YLPCIYAYNKIDQI 142 (160)
Q Consensus 129 Y~P~iyv~NKiD~i 142 (160)
-.|.|+|.||+|+.
T Consensus 114 ~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 114 DIPIILVGNKSDLV 127 (192)
T ss_dssp CCCEEEEEECTTCG
T ss_pred CCeEEEEEechhhh
Confidence 47999999999985
No 153
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=58.83 E-value=2.7 Score=30.14 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=16.8
Q ss_pred HHHhcCcceeceEEEEecCCCCCH
Q psy7060 121 DVINANRVYLPCIYAYNKIDQISI 144 (160)
Q Consensus 121 Dvi~~nrvY~P~iyv~NKiD~is~ 144 (160)
+.+.....-+|.++|.||+|+.+.
T Consensus 126 ~~l~~~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 126 PEVRHHCPNTPIILVGTKLDLRDD 149 (204)
Confidence 344333336899999999999753
No 154
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=53.03 E-value=8.8 Score=34.49 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCccceEEEeecCCCh----------hHHHHHHh-cCcce-eceEEEEecCCCCC
Q psy7060 91 EKLVQLILHEYKIFNAEVLFREDCNA----------DELIDVIN-ANRVY-LPCIYAYNKIDQIS 143 (160)
Q Consensus 91 e~~V~~IL~EYkI~NA~V~ired~t~----------DdliDvi~-~nrvY-~P~iyv~NKiD~is 143 (160)
++.++..+..++--++.+++-. ++- .+....+. ....= .|.|+|+||+|+.+
T Consensus 256 e~f~~~~~~~~~~aD~~llVVD-a~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 256 RDFVPNAIMGISQADMAILCVD-CSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp SCHHHHHTTTSSCCSEEEEEEE-CSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred cccHHHHHHHHhhcCceEEEEE-CCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 4566777776666665555543 332 12222221 11111 35899999999987
No 155
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=52.84 E-value=7.1 Score=32.17 Aligned_cols=16 Identities=25% Similarity=0.100 Sum_probs=13.6
Q ss_pred eceEEEEecCCCCCHH
Q psy7060 130 LPCIYAYNKIDQISIE 145 (160)
Q Consensus 130 ~P~iyv~NKiD~is~e 145 (160)
+|.++|+||+|+.+.+
T Consensus 213 ~~~ivVlNK~Dl~~~~ 228 (349)
T 2www_A 213 MADLVAVTKSDGDLIV 228 (349)
T ss_dssp SCSEEEECCCSGGGHH
T ss_pred cCCEEEEeeecCCCch
Confidence 4999999999998654
No 156
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=52.74 E-value=33 Score=29.08 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=12.8
Q ss_pred ceec-eEEEEecCCCCC
Q psy7060 128 VYLP-CIYAYNKIDQIS 143 (160)
Q Consensus 128 vY~P-~iyv~NKiD~is 143 (160)
.-+| .|+|+||+|+.+
T Consensus 153 ~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 153 AGVKHLIVLINKMDDPT 169 (439)
T ss_pred cCCCeEEEEeecCCCcc
Confidence 3457 899999999964
No 157
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=52.28 E-value=14 Score=30.67 Aligned_cols=15 Identities=33% Similarity=0.246 Sum_probs=12.8
Q ss_pred eceEEEEecCCCCCH
Q psy7060 130 LPCIYAYNKIDQISI 144 (160)
Q Consensus 130 ~P~iyv~NKiD~is~ 144 (160)
.|.|+|+||+|+.+.
T Consensus 136 ~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 136 DKIIIVQNKIDLVDE 150 (408)
T ss_dssp CCEEEEEECTTSSCT
T ss_pred CeEEEEEEccCCCCH
Confidence 478999999999864
No 158
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=52.23 E-value=8.2 Score=32.58 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=12.9
Q ss_pred eceEEEEecCCCCC
Q psy7060 130 LPCIYAYNKIDQIS 143 (160)
Q Consensus 130 ~P~iyv~NKiD~is 143 (160)
+|+++|.||+|+.+
T Consensus 307 ~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 307 KAVVIVVNKWDAVD 320 (456)
T ss_dssp CEEEEEEECGGGSC
T ss_pred CCEEEEEEChhcCC
Confidence 79999999999984
No 159
>2r5r_A UPF0343 protein NE1163; APC86493, DUF198, structural genomics, PSI-2, protein structure initiative; 3.05A {Nitrosomonas europaea atcc 19718}
Probab=52.20 E-value=6.4 Score=33.06 Aligned_cols=41 Identities=17% Similarity=0.393 Sum_probs=31.2
Q ss_pred ccccccCCCcccCHHHHHHHHHHcCccc--eE--EEee--cCCChhHHHHHHhcC
Q psy7060 78 IAFNSTCPLTQVNEKLVQLILHEYKIFN--AE--VLFR--EDCNADELIDVINAN 126 (160)
Q Consensus 78 ~~~~~~~~~~~~~e~~V~~IL~EYkI~N--A~--V~ir--ed~t~DdliDvi~~n 126 (160)
+...|+|| +-+-+.+|+-|| +. |.++ +++.++||||.++..
T Consensus 151 Vp~~T~CP--------CS~~is~~~aHnQRs~~~i~v~~~~~i~iedLI~~~E~~ 197 (271)
T 2r5r_A 151 VPVTSLCP--------CSKKISDYGAHNQRSHVTISVRTNSFIWIEDIIRIAEEQ 197 (271)
T ss_dssp EEEEEECH--------HHHHHSSSCCCEEEEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EEEEecCc--------ChHhhccCCCccccEEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 56789999 555677999999 43 3333 568999999999854
No 160
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=52.10 E-value=17 Score=31.29 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=20.9
Q ss_pred HHHHHhcCcceeceEEEEecCCCCCHHHHHH
Q psy7060 119 LIDVINANRVYLPCIYAYNKIDQISIEEVDR 149 (160)
Q Consensus 119 liDvi~~nrvY~P~iyv~NKiD~is~eevd~ 149 (160)
++..+.. -.|.|+|.||+|+.+.+++..
T Consensus 160 ~lk~L~~---~v~iIlVinK~Dll~~~ev~~ 187 (418)
T 2qag_C 160 FMKRLHE---KVNIIPLIAKADTLTPEECQQ 187 (418)
T ss_dssp HHHHHTT---TSEEEEEEESTTSSCHHHHHH
T ss_pred HHHHHhc---cCcEEEEEEcccCccHHHHHH
Confidence 4444443 479999999999998877654
No 161
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=51.77 E-value=4.2 Score=31.04 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCceeccCCCCeEEEEecC
Q psy7060 10 QRGLLEKELESVGIRLNKKKPNIYFKQKKA 39 (160)
Q Consensus 10 q~~~le~ELe~~GIrLnkk~p~I~ikkk~~ 39 (160)
....|.+.|.+.|+......|.|-+--...
T Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~ 36 (299)
T 2aka_B 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQS 36 (299)
T ss_dssp HHHHHHHHHTTSCCCTTCCCCEEEEEEBTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEeCCC
Confidence 456677888888887777778877765443
No 162
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=51.73 E-value=4.2 Score=33.97 Aligned_cols=52 Identities=19% Similarity=0.022 Sum_probs=30.5
Q ss_pred cCHHHHHHHHHHcCccceEEEeecCCCh------hHHHHHHhcCcceeceEEEEecCCCCCH
Q psy7060 89 VNEKLVQLILHEYKIFNAEVLFREDCNA------DELIDVINANRVYLPCIYAYNKIDQISI 144 (160)
Q Consensus 89 ~~e~~V~~IL~EYkI~NA~V~ired~t~------DdliDvi~~nrvY~P~iyv~NKiD~is~ 144 (160)
++.+..+++|++|.=..+-+++-=|++- .+|.+. .+ -+|.|+|+||+|+.+.
T Consensus 54 ~~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~-~~---~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 54 LTDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRF-VG---NNKVLLVGNKADLIPK 111 (368)
T ss_dssp --CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHH-SS---SSCEEEEEECGGGSCT
T ss_pred CCHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHH-hC---CCcEEEEEEChhcCCc
Confidence 4567789999988644423444334432 112221 12 3699999999999754
No 163
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=51.43 E-value=3.1 Score=29.51 Aligned_cols=14 Identities=36% Similarity=0.320 Sum_probs=12.5
Q ss_pred eeceEEEEecCCCC
Q psy7060 129 YLPCIYAYNKIDQI 142 (160)
Q Consensus 129 Y~P~iyv~NKiD~i 142 (160)
.+|.|+|.||+|+.
T Consensus 115 ~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 115 KLPITVVRNKADIT 128 (172)
T ss_dssp TCCEEEEEECHHHH
T ss_pred CCCEEEEEECccCC
Confidence 58999999999984
No 164
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=50.17 E-value=24 Score=28.58 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCceeccCCCCeEEEEe
Q psy7060 10 QRGLLEKELESVGIRLNKKKPNIYFKQK 37 (160)
Q Consensus 10 q~~~le~ELe~~GIrLnkk~p~I~ikkk 37 (160)
....|...|...|+.-.-..|.|-+--.
T Consensus 12 ~~~~l~d~l~~~g~~~~~~~~~I~vvG~ 39 (353)
T 2x2e_A 12 LVNRLQDAFSAIGQNADLDLPQIAVVGG 39 (353)
T ss_dssp HHHHHHHHHHTTTCGGGCCCCEEEEECB
T ss_pred HHHHHHHHHHHcCCCCCCCCCeEEEECC
Confidence 4566777888888877777788777544
No 165
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=50.08 E-value=15 Score=24.06 Aligned_cols=69 Identities=17% Similarity=0.088 Sum_probs=38.4
Q ss_pred cccCCCccc--CHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcC-cceeceEEEEecCCCCCHHHHHHH
Q psy7060 81 NSTCPLTQV--NEKLVQLILHEYKIFNAEVLFREDCNADELIDVINAN-RVYLPCIYAYNKIDQISIEEVDRI 150 (160)
Q Consensus 81 ~~~~~~~~~--~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~n-rvY~P~iyv~NKiD~is~eevd~i 150 (160)
.++||...+ +-..++++|.+.+|.=-++-+..+-..-+-+-...|+ +.-+|.|++=.+. .-.-+++..+
T Consensus 9 ~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~g~~-igG~d~l~~l 80 (93)
T 1t1v_A 9 TSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHY-CGDYELFVEA 80 (93)
T ss_dssp CSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEE-EEEHHHHHHH
T ss_pred cCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEECCEE-EeCHHHHHHH
Confidence 466776521 1257899999999875666555542221222223354 6788999874432 1133455444
No 166
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=49.85 E-value=8 Score=32.60 Aligned_cols=13 Identities=38% Similarity=0.378 Sum_probs=11.5
Q ss_pred ceEEEEecCCCCC
Q psy7060 131 PCIYAYNKIDQIS 143 (160)
Q Consensus 131 P~iyv~NKiD~is 143 (160)
|.|+|+||+|+.+
T Consensus 146 ~iivviNK~Dl~~ 158 (435)
T 1jny_A 146 QLIVAVNKMDLTE 158 (435)
T ss_dssp TCEEEEECGGGSS
T ss_pred eEEEEEEcccCCC
Confidence 5789999999986
No 167
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=49.65 E-value=36 Score=29.76 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=19.8
Q ss_pred ceeceEEEEecCCCCCHHHHHHH
Q psy7060 128 VYLPCIYAYNKIDQISIEEVDRI 150 (160)
Q Consensus 128 vY~P~iyv~NKiD~is~eevd~i 150 (160)
.-.|.|.|.||+|.++.+|+..+
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHH
T ss_pred hCCCEEEEEcchhccchHHHHHH
Confidence 45699999999999999888765
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=49.22 E-value=13 Score=26.65 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=21.4
Q ss_pred eeceEEEEecCCCC-----CHHHHHHHhcCCCc
Q psy7060 129 YLPCIYAYNKIDQI-----SIEEVDRIARQPNS 156 (160)
Q Consensus 129 Y~P~iyv~NKiD~i-----s~eevd~i~~~p~~ 156 (160)
-.|.+.|.||+|+. +.++...++..|+.
T Consensus 110 ~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~ 142 (199)
T 2f9l_A 110 NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL 142 (199)
T ss_dssp TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred CCeEEEEEECcccccccCcCHHHHHHHHHHcCC
Confidence 46999999999985 34667777776654
No 169
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=48.46 E-value=7.5 Score=32.62 Aligned_cols=52 Identities=13% Similarity=0.266 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHcCccceEEEeec---CCChh--HHHHHHhcCcceeceEEEEecCCCCC
Q psy7060 90 NEKLVQLILHEYKIFNAEVLFRE---DCNAD--ELIDVINANRVYLPCIYAYNKIDQIS 143 (160)
Q Consensus 90 ~e~~V~~IL~EYkI~NA~V~ire---d~t~D--dliDvi~~nrvY~P~iyv~NKiD~is 143 (160)
.+....+....|+=-++.+.+-. ..+.. ++.+.+. +..+|+++|.||+|+..
T Consensus 68 ~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~--~~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 68 SQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLR--KSTVDTILVANKAENLR 124 (439)
T ss_dssp CHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHH--HHTCCEEEEEESCCSHH
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH--HcCCCEEEEEeCCCCcc
Confidence 34444444444544444444332 13322 2334443 24689999999999864
No 170
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=48.45 E-value=24 Score=31.88 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=13.8
Q ss_pred ceeceEEEEecCCCCC
Q psy7060 128 VYLPCIYAYNKIDQIS 143 (160)
Q Consensus 128 vY~P~iyv~NKiD~is 143 (160)
.-+|.|+|+||+|+.+
T Consensus 122 ~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 122 MDLEVVPVLNKIDLPA 137 (599)
T ss_dssp TTCEEEEEEECTTSTT
T ss_pred CCCCEEEeeeccCccc
Confidence 3469999999999985
No 171
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=47.92 E-value=33 Score=23.45 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=28.4
Q ss_pred cCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcceeceEEEEec
Q psy7060 89 VNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNK 138 (160)
Q Consensus 89 ~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY~P~iyv~NK 138 (160)
-+.+.+++.++++++-+-.++.. -.++.+.. +-...|+++++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~~--~v~~~P~~~lid~ 139 (165)
T 3ha9_A 96 DTPEMFRKFIANYGDPSWIMVMD----DGSLVEKF--NVRSIDYIVIMDK 139 (165)
T ss_dssp CCHHHHHHHHHHHSCTTSEEEEC----CSHHHHHT--TCCSSSEEEEEET
T ss_pred CCHHHHHHHHHHcCCCCeeEEeC----hHHHHHHh--CCCCceEEEEEcC
Confidence 46778888888888755555544 23444444 2335699999876
No 172
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=47.17 E-value=10 Score=31.39 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCccceEEEeecC---CChhHHH---HHHhcCcceeceEEEEecCCCCCHH
Q psy7060 91 EKLVQLILHEYKIFNAEVLFRED---CNADELI---DVINANRVYLPCIYAYNKIDQISIE 145 (160)
Q Consensus 91 e~~V~~IL~EYkI~NA~V~ired---~t~Ddli---Dvi~~nrvY~P~iyv~NKiD~is~e 145 (160)
++..+..++....-.+-+++-.- +...+-. ..+..-. -.|.|+|+||+|+.+.+
T Consensus 94 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~-~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 94 EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-QKNIIIAQNKIELVDKE 153 (410)
T ss_dssp HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-CCCEEEEEECGGGSCHH
T ss_pred HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-CCcEEEEEECccCCCHH
Confidence 45566666655555555554321 1122222 2222111 14788999999999754
No 173
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=45.99 E-value=29 Score=22.22 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcceeceEEEEecC
Q psy7060 90 NEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKI 139 (160)
Q Consensus 90 ~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY~P~iyv~NKi 139 (160)
+.+.++..+.++++-+-.+....+ .++.+.. +-...|+++++++-
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~--~i~~~P~~~~id~~ 111 (136)
T 1zzo_A 67 QVPAMQEFVNKYPVKTFTQLADTD---GSVWANF--GVTQQPAYAFVDPH 111 (136)
T ss_dssp CHHHHHHHHHHTTCTTSEEEECTT---CHHHHHT--TCCSSSEEEEECTT
T ss_pred CHHHHHHHHHHcCCCceEEEEcCC---cHHHHHc--CCCCCceEEEECCC
Confidence 467788888888875555554332 2333333 23457999999753
No 174
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=45.16 E-value=38 Score=28.56 Aligned_cols=63 Identities=22% Similarity=0.108 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCccceEEEeecCCChhHHHHHHhc--CcceeceEEEEecCC--CCC---H---HHHHHHhcC--CCceee
Q psy7060 92 KLVQLILHEYKIFNAEVLFREDCNADELIDVINA--NRVYLPCIYAYNKID--QIS---I---EEVDRIARQ--PNSVVV 159 (160)
Q Consensus 92 ~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~--nrvY~P~iyv~NKiD--~is---~---eevd~i~~~--p~~v~i 159 (160)
+.++..|.+.+... ..+.+.++ ..++.+ -...+|.||+.||.| +++ . +.+...++. ...|++
T Consensus 168 ~~~~~~L~~~~~~~-----~~~~~~~~-~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 168 EGLYVHLQEGKPAR-----TFPPSEAV-ARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHTTCCGG-----GSCCCHHH-HHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHhcCCCcc-----cCCCCHHH-HHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 34555666655432 12455444 556653 355689999999997 333 2 444444432 345666
Q ss_pred C
Q psy7060 160 R 160 (160)
Q Consensus 160 s 160 (160)
|
T Consensus 242 S 242 (368)
T 2dby_A 242 S 242 (368)
T ss_dssp C
T ss_pred e
Confidence 5
No 175
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=44.61 E-value=19 Score=30.95 Aligned_cols=15 Identities=40% Similarity=0.472 Sum_probs=13.1
Q ss_pred eeceEEEEecCCCCC
Q psy7060 129 YLPCIYAYNKIDQIS 143 (160)
Q Consensus 129 Y~P~iyv~NKiD~is 143 (160)
-.|.|+|.||+|+.+
T Consensus 150 ~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 150 KSPVIVVMNKIDENP 164 (535)
T ss_dssp SCCEEEEECCTTTCT
T ss_pred CCCEEEEEECCCccc
Confidence 379999999999864
No 176
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=43.63 E-value=1.1e+02 Score=28.83 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCccceEEEe-ecCCC----h-h--HHHHHHhcCcceeceEEEEecCCCCCHH
Q psy7060 92 KLVQLILHEYKIFNAEVLF-REDCN----A-D--ELIDVINANRVYLPCIYAYNKIDQISIE 145 (160)
Q Consensus 92 ~~V~~IL~EYkI~NA~V~i-red~t----~-D--dliDvi~~nrvY~P~iyv~NKiD~is~e 145 (160)
+.+..++.+|--..|++.+ --|++ . | ++++.+.. .-.|+|.|+||+|+++.+
T Consensus 174 ~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~--~g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 174 FQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT--TCSSEEEEEECTTSSCTT
T ss_pred HHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh--cCCCEEEEEeCcccCCcc
Confidence 4566677777544444332 22333 2 2 34555543 346999999999998653
No 177
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.20 E-value=17 Score=25.03 Aligned_cols=58 Identities=16% Similarity=0.124 Sum_probs=34.3
Q ss_pred cccCCCccc--CHHHHHHHHHHcCccceEEEeecCCCh-hHHHHHHh------cCcceeceEEEEec
Q psy7060 81 NSTCPLTQV--NEKLVQLILHEYKIFNAEVLFREDCNA-DELIDVIN------ANRVYLPCIYAYNK 138 (160)
Q Consensus 81 ~~~~~~~~~--~e~~V~~IL~EYkI~NA~V~ired~t~-DdliDvi~------~nrvY~P~iyv~NK 138 (160)
-++||.-.. +-..++++|.+.+|.=.++-|..|-.+ +++.+... .....+|+|++=.+
T Consensus 15 ~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~ 81 (111)
T 2ct6_A 15 ASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDR 81 (111)
T ss_dssp CSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTE
T ss_pred cCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEECCE
Confidence 467886543 222699999999987666666554222 22333321 14557899986433
No 178
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=41.88 E-value=20 Score=28.54 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=16.7
Q ss_pred eceEEEEecCCCCCHHHHHHH
Q psy7060 130 LPCIYAYNKIDQISIEEVDRI 150 (160)
Q Consensus 130 ~P~iyv~NKiD~is~eevd~i 150 (160)
.|.|.|++|+|.++.+|+..+
T Consensus 141 ~~vI~Vi~K~D~lt~~e~~~~ 161 (270)
T 3sop_A 141 VNIIPVIAKADTMTLEEKSEF 161 (270)
T ss_dssp SEEEEEETTGGGSCHHHHHHH
T ss_pred CcEEEEEeccccCCHHHHHHH
Confidence 788888899998888776553
No 179
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=41.57 E-value=63 Score=27.46 Aligned_cols=52 Identities=12% Similarity=0.291 Sum_probs=38.7
Q ss_pred ccccCCCc--ccCHHHHHHHHHHcCccc-eEEEeecCCChhHHHHHHhcCcceeceEEEEe
Q psy7060 80 FNSTCPLT--QVNEKLVQLILHEYKIFN-AEVLFREDCNADELIDVINANRVYLPCIYAYN 137 (160)
Q Consensus 80 ~~~~~~~~--~~~e~~V~~IL~EYkI~N-A~V~ired~t~DdliDvi~~nrvY~P~iyv~N 137 (160)
+++..|+. ..++++ +.+|++|...+ .-+++..+++-+++ .+| .|+|++..++
T Consensus 172 L~~~~~~~~~~~~~~e-~~~l~~~~llt~KPvi~v~N~~e~~~----~~n-~~~~~v~~~~ 226 (363)
T 1jal_A 172 LENAGMIRSVGLDKEE-LQAIKSYNFLTLKPTMYIANVNEDGF----ENN-PYLDRVREIA 226 (363)
T ss_dssp HHTTCCGGGSCCCHHH-HHHHGGGCCSTTSCEEEEEECCTTCS----SSC-HHHHHHHHHH
T ss_pred HhcCCCccccCCCHHH-HHHHHHhhcccCCcEEEEEecccccc----ccc-HHHHHHHHHH
Confidence 55666766 567887 67899998887 88888888877766 345 6777776665
No 180
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=40.65 E-value=16 Score=30.27 Aligned_cols=50 Identities=16% Similarity=0.237 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCccceEEEeecC---CC--hhHHHHHHhcCcceec-eEEEEecCCCCC
Q psy7060 92 KLVQLILHEYKIFNAEVLFRED---CN--ADELIDVINANRVYLP-CIYAYNKIDQIS 143 (160)
Q Consensus 92 ~~V~~IL~EYkI~NA~V~ired---~t--~DdliDvi~~nrvY~P-~iyv~NKiD~is 143 (160)
+..+.....+.--++-+++-.- .. ..+.+..+. ..-+| .|+|+||+|+.+
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~--~~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR--QVGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHH--HTTCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHH--HcCCCEEEEEEECccccC
Confidence 3455556666655555554331 11 122333332 23468 679999999984
No 181
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=40.56 E-value=19 Score=25.86 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=22.0
Q ss_pred ceeceEEEEecCCCC-----CHHHHHHHhcCCCc
Q psy7060 128 VYLPCIYAYNKIDQI-----SIEEVDRIARQPNS 156 (160)
Q Consensus 128 vY~P~iyv~NKiD~i-----s~eevd~i~~~p~~ 156 (160)
.-.|++.+.||+|+. +.++...+++.|+.
T Consensus 133 ~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~ 166 (191)
T 1oix_A 133 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGL 166 (191)
T ss_dssp TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 357999999999985 34667777777754
No 182
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=40.38 E-value=25 Score=31.90 Aligned_cols=17 Identities=41% Similarity=0.221 Sum_probs=14.3
Q ss_pred cceeceEEEEecCCCCC
Q psy7060 127 RVYLPCIYAYNKIDQIS 143 (160)
Q Consensus 127 rvY~P~iyv~NKiD~is 143 (160)
..-+|.|+|+||+|+.+
T Consensus 123 ~~~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 123 EQDLVIIPVINKIDLPS 139 (600)
T ss_dssp HTTCEEEEEEECTTSTT
T ss_pred HCCCCEEEEEeccCccc
Confidence 34579999999999975
No 183
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=40.16 E-value=18 Score=28.38 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=13.0
Q ss_pred eeceEEEEecCCCCC
Q psy7060 129 YLPCIYAYNKIDQIS 143 (160)
Q Consensus 129 Y~P~iyv~NKiD~is 143 (160)
-+|.++|+||+|+..
T Consensus 112 ~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 112 GIPCIVALNMLDIAE 126 (274)
T ss_dssp TCCEEEEEECHHHHH
T ss_pred CCCEEEEEECccchh
Confidence 479999999999864
No 184
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=39.90 E-value=35 Score=23.16 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=32.8
Q ss_pred ccCCCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHh--cCcceeceEEEEe
Q psy7060 82 STCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVIN--ANRVYLPCIYAYN 137 (160)
Q Consensus 82 ~~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~--~nrvY~P~iyv~N 137 (160)
++||.- ..++.+|+++++.-..+-+..+-.-.++-+.+. .++.-+|++++=.
T Consensus 25 ~~Cp~C----~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi~g 78 (114)
T 3h8q_A 25 SYCPHS----TRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNK 78 (114)
T ss_dssp TTCHHH----HHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEETT
T ss_pred CCCCcH----HHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEECC
Confidence 578765 478999999998765555554333334444331 2356679998833
No 185
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=39.36 E-value=21 Score=29.28 Aligned_cols=15 Identities=33% Similarity=0.208 Sum_probs=12.5
Q ss_pred eeceEEEEecCCCCC
Q psy7060 129 YLPCIYAYNKIDQIS 143 (160)
Q Consensus 129 Y~P~iyv~NKiD~is 143 (160)
-+|.++++||+|+..
T Consensus 193 ~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 193 ELADMIAVNKADDGD 207 (337)
T ss_dssp HHCSEEEEECCSTTC
T ss_pred ccccEEEEEchhccC
Confidence 358899999999764
No 186
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=39.15 E-value=20 Score=28.51 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=13.7
Q ss_pred eeceEEEEecCCCCC
Q psy7060 129 YLPCIYAYNKIDQIS 143 (160)
Q Consensus 129 Y~P~iyv~NKiD~is 143 (160)
-+|.++|.||+|+.+
T Consensus 115 ~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 115 DAKIFVLLHKMDLVQ 129 (307)
T ss_dssp TCEEEEEEECGGGSC
T ss_pred CCeEEEEEecccccc
Confidence 489999999999987
No 187
>4f8b_A NADPH-dependent 7-cyano-7-deazaguanine reductase; beta barrel, protein thioimide complex, pterin binding fold, fold; HET: GD1 PE4; 2.50A {Bacillus subtilis subsp} PDB: 4fgc_A*
Probab=39.12 E-value=15 Score=29.48 Aligned_cols=51 Identities=24% Similarity=0.404 Sum_probs=34.5
Q ss_pred HhhhcCccccccCCCcccCHHHHHHHHHHcCccceEEEeecCCC---hhHHHHHHhc
Q psy7060 72 QKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCN---ADELIDVINA 125 (160)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t---~DdliDvi~~ 125 (160)
|-+-|-|.+.-.---.-++.|..+..|..|+=|++ |.|+|+ .+||..++.-
T Consensus 61 QPDfatI~I~Y~P~~~~vE~kSLKlYL~SFRnh~~---FHE~cvn~I~~DL~~~~~P 114 (165)
T 4f8b_A 61 QPDFATIYISYIPDEKMVESKSLKLYLFSFRNHGD---FHEDCMNIIMNDLIELMDP 114 (165)
T ss_dssp CEEEEEEEEEEECSSEEECHHHHHHHHHTTTTCBC---CHHHHHHHHHHHHHHHHCC
T ss_pred CCcEEEEEEEEEeCCccCcHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHhhCC
Confidence 44445444432211112789999999999999998 999997 5666666643
No 188
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=39.06 E-value=6.4 Score=27.39 Aligned_cols=14 Identities=29% Similarity=0.225 Sum_probs=12.5
Q ss_pred eeceEEEEecCCCC
Q psy7060 129 YLPCIYAYNKIDQI 142 (160)
Q Consensus 129 Y~P~iyv~NKiD~i 142 (160)
-+|.|+|.||+|+.
T Consensus 108 ~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 108 GANLLLALNKMDLA 121 (165)
T ss_dssp TCCEEEEEECHHHH
T ss_pred CCCEEEEEEchHhc
Confidence 57999999999975
No 189
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=37.69 E-value=49 Score=22.54 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=39.8
Q ss_pred cccCCCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcceeceEEEEecCCC--CCHHHHH
Q psy7060 81 NSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKIDQ--ISIEEVD 148 (160)
Q Consensus 81 ~~~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY~P~iyv~NKiD~--is~eevd 148 (160)
-++||.- ..+++.|.+.+|-=-++-+.+|-.+-+....+.+.+.-+|.|++-+.-=+ .+.+++.
T Consensus 11 ~~~Cp~C----~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~ 76 (92)
T 2lqo_A 11 TSWCGYC----LRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVK 76 (92)
T ss_dssp CTTCSSH----HHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHH
T ss_pred CCCCHhH----HHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHH
Confidence 3567764 45889999999987777777765544444444433445799987543211 2555553
No 190
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=37.07 E-value=18 Score=30.22 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCccceEEEeecCCC----hhHHHHHHhcCcceece-EEEEe-cCCCCCHHHH
Q psy7060 92 KLVQLILHEYKIFNAEVLFREDCN----ADELIDVINANRVYLPC-IYAYN-KIDQISIEEV 147 (160)
Q Consensus 92 ~~V~~IL~EYkI~NA~V~ired~t----~DdliDvi~~nrvY~P~-iyv~N-KiD~is~eev 147 (160)
+.++.....++.-.+-+++-.+-. ..+.+..+. ..=+|. |+++| |+|+ +.+.+
T Consensus 72 ~f~~~~~~~~~~aD~ailVvd~~g~~~qt~e~~~~~~--~~~i~~~ivvvNNK~Dl-~~~~~ 130 (370)
T 2elf_A 72 KTLKSLITALNISDIAVLCIPPQGLDAHTGECIIALD--LLGFKHGIIALTRSDST-HMHAI 130 (370)
T ss_dssp TCHHHHHHHHHTCSEEEEEECTTCCCHHHHHHHHHHH--HTTCCEEEEEECCGGGS-CHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEcCCCCcHHHHHHHHHHH--HcCCCeEEEEEEeccCC-CHHHH
Confidence 345556666655555555543211 122233332 223688 99999 9999 75443
No 191
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=36.91 E-value=37 Score=28.91 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCccceEEEeecCCChh----------HHHHHH-hcCcceec-eEEEEecCCCC
Q psy7060 91 EKLVQLILHEYKIFNAEVLFREDCNAD----------ELIDVI-NANRVYLP-CIYAYNKIDQI 142 (160)
Q Consensus 91 e~~V~~IL~EYkI~NA~V~ired~t~D----------dliDvi-~~nrvY~P-~iyv~NKiD~i 142 (160)
++..+.....+.--++-+++-. ++-- +....+ .....-+| .|+|+||+|+.
T Consensus 96 ~~f~~~~~~~~~~aD~~ilVvd-a~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 96 RDFIKNMITGTSQADCAILIIA-GGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp TTHHHHHHHSSSCCSEEEEEEE-CSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred HHHHHHHHhhhhhCCEEEEEEe-CCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 3455666666665555555543 3311 111111 11222356 78899999998
No 192
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=36.73 E-value=10 Score=32.72 Aligned_cols=50 Identities=16% Similarity=0.292 Sum_probs=30.2
Q ss_pred HHHHHHHHcCccceEEEeecCCChh----HHHHHHhcCcceeceEEEEecCCCCCHH
Q psy7060 93 LVQLILHEYKIFNAEVLFREDCNAD----ELIDVINANRVYLPCIYAYNKIDQISIE 145 (160)
Q Consensus 93 ~V~~IL~EYkI~NA~V~ired~t~D----dliDvi~~nrvY~P~iyv~NKiD~is~e 145 (160)
.++..+..|+--++-+++- |++.. +++..+... =+|.|+|.||+|+.+.+
T Consensus 103 ~~~~~~~~l~~aD~vllVv-D~~~~~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 103 RVEKARRVFYRADCGILVT-DSAPTPYEDDVVNLFKEM--EIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp CHHHHHHHHTSCSEEEEEC-SSSCCHHHHHHHHHHHHT--TCCEEEECCCCTTTTCC
T ss_pred HHHHHHHHHhcCCEEEEEE-eCCChHHHHHHHHHHHhc--CCCEEEEEeCcCCCCcc
Confidence 4455555666556655555 33332 233334333 47999999999998653
No 193
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=36.53 E-value=93 Score=23.26 Aligned_cols=21 Identities=19% Similarity=0.072 Sum_probs=15.7
Q ss_pred HhcCcceeceEEEEe-cCCCCC
Q psy7060 123 INANRVYLPCIYAYN-KIDQIS 143 (160)
Q Consensus 123 i~~nrvY~P~iyv~N-KiD~is 143 (160)
+.+.....|.|+++| |+|+..
T Consensus 132 ~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 132 IFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHCGGGGGGEEEEEECGGGGTT
T ss_pred HhCchhhccEEEEEEcccccCC
Confidence 344444679999998 999974
No 194
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=35.17 E-value=18 Score=31.95 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=13.6
Q ss_pred eeceEEEEecCCCCCH
Q psy7060 129 YLPCIYAYNKIDQISI 144 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ 144 (160)
-+|.|+|+||+|+.+.
T Consensus 134 ~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 134 HTPIMTFINKMDRDTR 149 (528)
T ss_dssp TCCEEEEEECTTSCCS
T ss_pred CCCEEEEEeCCCCccc
Confidence 4799999999999743
No 195
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=34.90 E-value=8.1 Score=26.85 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=12.8
Q ss_pred eeceEEEEecCCCCC
Q psy7060 129 YLPCIYAYNKIDQIS 143 (160)
Q Consensus 129 Y~P~iyv~NKiD~is 143 (160)
-.|.++|.||+|+.+
T Consensus 112 ~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 112 GANLLLALNKMDLAK 126 (188)
T ss_dssp TCCEEEEEECHHHHH
T ss_pred CCCEEEEEEhhhccc
Confidence 479999999999853
No 196
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=34.07 E-value=61 Score=22.84 Aligned_cols=85 Identities=16% Similarity=0.314 Sum_probs=40.3
Q ss_pred cceEEecccCCchhhHHHHHHHHHHhhhhhhHHhhhcCccccccCCCcccCHHHH-HHHHHHcC---ccceEEEeecCCC
Q psy7060 40 GGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLV-QLILHEYK---IFNAEVLFREDCN 115 (160)
Q Consensus 40 GGI~i~~t~~lt~~~~~~v~~~l~~yki~n~~~~~~~~~~~~~~~~~~~~~e~~V-~~IL~EYk---I~NA~V~ired~t 115 (160)
.|+...+...+..-..+.++......+|. +-..++||.-. .+ +.+|.+++ +.=..+-+..+-+
T Consensus 12 ~~~~~~~~~~~~~~~~~~v~~~i~~~~Vv---------vy~~~~Cp~C~----~a~k~~L~~~~~~~i~~~~vdvd~~~~ 78 (129)
T 3ctg_A 12 SGLVPRGSHMVSQETVAHVKDLIGQKEVF---------VAAKTYCPYCK----ATLSTLFQELNVPKSKALVLELDEMSN 78 (129)
T ss_dssp ----------CCHHHHHHHHHHHHHSSEE---------EEECTTCHHHH----HHHHHHHTTSCCCGGGEEEEEGGGSTT
T ss_pred cccccCCCccccHHHHHHHHHHHcCCCEE---------EEECCCCCchH----HHHHHHHHhcCccCCCcEEEEccccCC
Confidence 46655555544433344555555444332 22346898643 56 99999998 5544555554443
Q ss_pred hhHHHHHHh--cCcceeceEEEEe
Q psy7060 116 ADELIDVIN--ANRVYLPCIYAYN 137 (160)
Q Consensus 116 ~DdliDvi~--~nrvY~P~iyv~N 137 (160)
..++.+.+. .+..-+|+|++=.
T Consensus 79 ~~~~~~~L~~~~g~~tVP~vfi~g 102 (129)
T 3ctg_A 79 GSEIQDALEEISGQKTVPNVYING 102 (129)
T ss_dssp HHHHHHHHHHHHSCCSSCEEEETT
T ss_pred HHHHHHHHHHHhCCCCCCEEEECC
Confidence 223333332 1345689987533
No 197
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=33.36 E-value=44 Score=21.26 Aligned_cols=48 Identities=17% Similarity=0.116 Sum_probs=30.9
Q ss_pred cCCCcccCHHHHHHHHHHcCccceEEEee-----cCCC-hhHHHHHHhcCcc----eeceEEE
Q psy7060 83 TCPLTQVNEKLVQLILHEYKIFNAEVLFR-----EDCN-ADELIDVINANRV----YLPCIYA 135 (160)
Q Consensus 83 ~~~~~~~~e~~V~~IL~EYkI~NA~V~ir-----ed~t-~DdliDvi~~nrv----Y~P~iyv 135 (160)
+||.- ..++++|++.+|.=.++-+. ++-. .++|.+ ..|.++ -+|+|++
T Consensus 13 ~Cp~C----~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~-~~g~~~~~~~tvP~v~i 70 (87)
T 1aba_A 13 KCGPC----DNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLT-KLGRDTQIGLTMPQVFA 70 (87)
T ss_dssp CCHHH----HHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHH-HHTCSCCTTCCSCEEEC
T ss_pred cCccH----HHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHH-HhCCCCCCCCccCEEEE
Confidence 67743 46899999999876666665 3322 233433 346663 7899986
No 198
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=32.94 E-value=61 Score=28.85 Aligned_cols=58 Identities=10% Similarity=-0.028 Sum_probs=33.6
Q ss_pred CcccCHHHHHHHHHHcCcc-ceEEEeecCCCh-------hHHHHHHhcCcceeceEEEEecCCCCCHH
Q psy7060 86 LTQVNEKLVQLILHEYKIF-NAEVLFREDCNA-------DELIDVINANRVYLPCIYAYNKIDQISIE 145 (160)
Q Consensus 86 ~~~~~e~~V~~IL~EYkI~-NA~V~ired~t~-------DdliDvi~~nrvY~P~iyv~NKiD~is~e 145 (160)
|..-..+.+..++.+|--. ++-+++--..+. .++.+-+. ..-.++|.|+||.|++...
T Consensus 165 LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~--~~g~rtI~VlTK~Dlv~~g 230 (608)
T 3szr_A 165 QPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD--PEGDRTIGILTKPDLVDKG 230 (608)
T ss_dssp SSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC--SSCCSEEEEEECGGGSSSS
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh--hcCCceEEEecchhhcCcc
Confidence 3333456888899998322 233333222332 33444443 3346899999999998543
No 199
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=32.92 E-value=11 Score=29.90 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=12.3
Q ss_pred eeceEEEEecCCCC
Q psy7060 129 YLPCIYAYNKIDQI 142 (160)
Q Consensus 129 Y~P~iyv~NKiD~i 142 (160)
-+|.++|.||+|+.
T Consensus 107 ~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 107 GIPVTIALNMIDVL 120 (272)
T ss_dssp CSCEEEEEECHHHH
T ss_pred CCCEEEEEEChhhC
Confidence 47999999999975
No 200
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=32.67 E-value=60 Score=21.80 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhc----CcceeceEEEEec
Q psy7060 90 NEKLVQLILHEYKIFNAEVLFREDCNADELIDVINA----NRVYLPCIYAYNK 138 (160)
Q Consensus 90 ~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~----nrvY~P~iyv~NK 138 (160)
+.+.+++.+.++++.-. ++.. .+++...... +...+|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~i~~~P~~~lid~ 125 (165)
T 3or5_A 78 QLPNVKNYMKTQGIIYP-VMMA----TPELIRAFNGYIDGGITGIPTSFVIDA 125 (165)
T ss_dssp CHHHHHHHHHHHTCCSC-EEEC----CHHHHHHHHTTSTTCSCSSSEEEEECT
T ss_pred CHHHHHHHHHHcCCCCc-eEec----CHHHHHHHhhhhccCCCCCCeEEEECC
Confidence 46667777777776433 2221 1244444431 3556899999976
No 201
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=32.22 E-value=59 Score=20.53 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=32.6
Q ss_pred cccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcceeceEEEEec
Q psy7060 87 TQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNK 138 (160)
Q Consensus 87 ~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY~P~iyv~NK 138 (160)
..-+.+.+++.+.+|++.+-.+....+- ++.+.. +....|+++++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~--~v~~~P~~~lid~ 113 (138)
T 4evm_A 67 GEQSEADFKNWYKGLDYKNLPVLVDPSG---KLLETY--GVRSYPTQAFIDK 113 (138)
T ss_dssp TCCCHHHHHHHHTTCCCTTCCEEECTTC---HHHHHT--TCCSSSEEEEECT
T ss_pred chhhHHHHHHHHhhcCCCCeeEEECcch---HHHHHc--CcccCCeEEEECC
Confidence 4567888999999998877666665443 344433 2345799999976
No 202
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=32.08 E-value=30 Score=29.53 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCccceEEEeecCCCh----------hHHHHHHh-cCcceec-eEEEEecCCCCC
Q psy7060 91 EKLVQLILHEYKIFNAEVLFREDCNA----------DELIDVIN-ANRVYLP-CIYAYNKIDQIS 143 (160)
Q Consensus 91 e~~V~~IL~EYkI~NA~V~ired~t~----------DdliDvi~-~nrvY~P-~iyv~NKiD~is 143 (160)
++..+.....+.--++-+++-. ++- .+....+. ....-+| .|+|+||+|+.+
T Consensus 132 ~~f~~~~~~~~~~aD~~ilVvD-a~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 132 KGYVTNMINGASQADIGVLVIS-ARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPS 195 (467)
T ss_dssp ----------TTSCSEEEEEEE-CSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTT
T ss_pred HHHHHHHHhhcccCCEEEEEEe-CCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCC
Confidence 4555556666655555555432 221 11122111 1223367 889999999964
No 203
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=31.99 E-value=39 Score=22.45 Aligned_cols=54 Identities=13% Similarity=0.240 Sum_probs=34.2
Q ss_pred cccCCCcccCHHHHHHHHHHcCccceEEEeecC-CChhHHHHHHh--cCcceeceEEEEec
Q psy7060 81 NSTCPLTQVNEKLVQLILHEYKIFNAEVLFRED-CNADELIDVIN--ANRVYLPCIYAYNK 138 (160)
Q Consensus 81 ~~~~~~~~~~e~~V~~IL~EYkI~NA~V~ired-~t~DdliDvi~--~nrvY~P~iyv~NK 138 (160)
-++||.-+ .++.+|+++++.-..+-+..+ -+-+++.+.+. .+...+|+|++=.|
T Consensus 26 ~~~Cp~C~----~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g~ 82 (113)
T 3rhb_A 26 KTWCSYCT----EVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGK 82 (113)
T ss_dssp CTTCHHHH----HHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETTE
T ss_pred CCCChhHH----HHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECCE
Confidence 36787653 688999999987766666553 12344444442 24567899976443
No 204
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=31.97 E-value=83 Score=24.67 Aligned_cols=39 Identities=8% Similarity=0.106 Sum_probs=32.9
Q ss_pred CcccCHHHHHHHHHH-cCccceEEEeecCCChhHHHHHHh
Q psy7060 86 LTQVNEKLVQLILHE-YKIFNAEVLFREDCNADELIDVIN 124 (160)
Q Consensus 86 ~~~~~e~~V~~IL~E-YkI~NA~V~ired~t~DdliDvi~ 124 (160)
+..++.++++...+. |.-.|+.+.+-+|++.+++.+.+.
T Consensus 176 l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~ 215 (434)
T 3gwb_A 176 IPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAA 215 (434)
T ss_dssp TTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHH
Confidence 556788999998877 578899999999999999887764
No 205
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=31.86 E-value=19 Score=30.20 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=12.4
Q ss_pred ceeceEEEEecCCCCCH
Q psy7060 128 VYLPCIYAYNKIDQISI 144 (160)
Q Consensus 128 vY~P~iyv~NKiD~is~ 144 (160)
.-+|.++|.||+|+...
T Consensus 110 ~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 110 TKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp CCSCEEEEEECCCC---
T ss_pred cCCCEEEEEECccCccc
Confidence 45799999999998754
No 206
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=31.55 E-value=92 Score=25.68 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCccceEEEeecCCCh---h---HHHHHHhcCcceece-EEEEecCCCCC
Q psy7060 91 EKLVQLILHEYKIFNAEVLFREDCNA---D---ELIDVINANRVYLPC-IYAYNKIDQIS 143 (160)
Q Consensus 91 e~~V~~IL~EYkI~NA~V~ired~t~---D---dliDvi~~nrvY~P~-iyv~NKiD~is 143 (160)
++..+.....+.--++-+++-. ++- . +.+..+. ..=+|. |+|+||+|+.+
T Consensus 77 ~~f~~~~~~~~~~aD~~ilVvd-a~~g~~~qt~e~l~~~~--~~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 77 ADYVKNMITGTAPLDGCILVVA-ANDGPMPQTREHLLLAR--QIGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHHHHHHHTSSCCSEEEEEEE-TTTCSCHHHHHHHHHHH--HTTCCCEEEEEECGGGCS
T ss_pred HHHHHHHHhhHhhCCEEEEEEE-CCCCCCHHHHHHHHHHH--HcCCCeEEEEEECcccCC
Confidence 4445556666665555555532 221 1 2222222 234684 78999999984
No 207
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=31.46 E-value=68 Score=20.60 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcceeceEEEEec
Q psy7060 90 NEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNK 138 (160)
Q Consensus 90 ~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY~P~iyv~NK 138 (160)
+.+.+++.+.+|++ +-.+....+ .++.+.. +....|+++++++
T Consensus 66 ~~~~~~~~~~~~~~-~~~~~~d~~---~~~~~~~--~i~~~P~~~lid~ 108 (136)
T 1lu4_A 66 DVGAMQSFVSKYNL-NFTNLNDAD---GVIWARY--NVPWQPAFVFYRA 108 (136)
T ss_dssp CHHHHHHHHHHHTC-CSEEEECTT---SHHHHHT--TCCSSSEEEEECT
T ss_pred CHHHHHHHHHHcCC-CceEEECCc---hhHHHhc--CCCCCCEEEEECC
Confidence 47778888888887 344444322 2333333 2345799999975
No 208
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=31.17 E-value=15 Score=33.43 Aligned_cols=16 Identities=25% Similarity=0.274 Sum_probs=13.4
Q ss_pred eeceEEEEecCCCCCH
Q psy7060 129 YLPCIYAYNKIDQISI 144 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ 144 (160)
-.|.++|+||+|+.+.
T Consensus 230 ~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 230 GLTVFFLVNAWDQVRE 245 (695)
T ss_dssp CCCEEEEEECGGGGGG
T ss_pred CCCEEEEEECcccccc
Confidence 4689999999998754
No 209
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=31.00 E-value=18 Score=30.33 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=13.8
Q ss_pred eeceEEEEecCCCCCH
Q psy7060 129 YLPCIYAYNKIDQISI 144 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ 144 (160)
-.|+++|.||+|+.+.
T Consensus 286 ~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 286 GKAVVIVVNKWDAVDK 301 (436)
T ss_dssp TCEEEEEEECGGGSCC
T ss_pred CCcEEEEEECccCCCc
Confidence 4799999999999853
No 210
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=30.48 E-value=1e+02 Score=20.00 Aligned_cols=48 Identities=10% Similarity=0.037 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcceeceEEEEecCC
Q psy7060 90 NEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKID 140 (160)
Q Consensus 90 ~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY~P~iyv~NKiD 140 (160)
+.+.+++.++++++.+-.+....+-. .++.+... -...|+++++++--
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~--i~~~P~~~lid~~G 122 (148)
T 3hcz_A 75 KDEEWLKFIRSKKIGGWLNVRDSKNH-TDFKITYD--IYATPVLYVLDKNK 122 (148)
T ss_dssp SSHHHHHHHHHHTCTTSEEEECTTCC-CCHHHHHC--CCSSCEEEEECTTC
T ss_pred CHHHHHHHHHHcCCCCceEEeccccc-hhHHHhcC--cCCCCEEEEECCCC
Confidence 34567777777777655555544332 11333332 23579999997643
No 211
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=30.04 E-value=24 Score=31.44 Aligned_cols=15 Identities=27% Similarity=0.394 Sum_probs=12.2
Q ss_pred eec-eEEEEecCCCCC
Q psy7060 129 YLP-CIYAYNKIDQIS 143 (160)
Q Consensus 129 Y~P-~iyv~NKiD~is 143 (160)
-+| .|+|+||+|+.+
T Consensus 314 gip~iIvviNKiDl~~ 329 (592)
T 3mca_A 314 GISEIVVSVNKLDLMS 329 (592)
T ss_dssp SCCCEEEEEECGGGGT
T ss_pred CCCeEEEEEecccccc
Confidence 356 788999999975
No 212
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=29.47 E-value=25 Score=21.90 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=30.4
Q ss_pred cccCCCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcceeceEEE
Q psy7060 81 NSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYA 135 (160)
Q Consensus 81 ~~~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY~P~iyv 135 (160)
.+.||.-+.-...++.++.+|++.=-.+.+..|-...++... -+...+|++++
T Consensus 9 ~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~gv~~vPt~~i 61 (80)
T 2k8s_A 9 HAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEK--AGVKSVPALVI 61 (80)
T ss_dssp ECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHH--HTCCEEEEEEE
T ss_pred CCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHH--cCCCcCCEEEE
Confidence 356887777777777888888764222223222112233322 24557899987
No 213
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=29.07 E-value=35 Score=29.32 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=17.2
Q ss_pred eeceEEEEecCCCCCHHHHHHH
Q psy7060 129 YLPCIYAYNKIDQISIEEVDRI 150 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~eevd~i 150 (160)
-.|.|+++||+|+.+.+.++.+
T Consensus 269 ~~P~ILVlNKlDl~~~~~~~~l 290 (416)
T 1udx_A 269 RRPSLVALNKVDLLEEEAVKAL 290 (416)
T ss_dssp HSCEEEEEECCTTSCHHHHHHH
T ss_pred cCCEEEEEECCChhhHHHHHHH
Confidence 4799999999999876554444
No 214
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.32 E-value=22 Score=25.69 Aligned_cols=58 Identities=17% Similarity=0.372 Sum_probs=41.8
Q ss_pred hhhhhhHHhhhcCccccccCCCcccCHHHHHHHHHHcCcc--ceEEEeecCCC---hhHHHHHHhcCcce
Q psy7060 65 YKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIF--NAEVLFREDCN---ADELIDVINANRVY 129 (160)
Q Consensus 65 yki~n~~~~~~~~~~~~~~~~~~~~~e~~V~~IL~EYkI~--NA~V~ired~t---~DdliDvi~~nrvY 129 (160)
|||.|.+....=||+.+|- ++++++...-+.+. ...+.+.+|=| -||....+..|-++
T Consensus 12 fkV~~~~Rs~k~GV~A~sL-------~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp~nT~l 74 (91)
T 2eel_A 12 FRVSNHDRSSRRGVMASSL-------QELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHF 74 (91)
T ss_dssp EEEECTTSCCCEEEEESSH-------HHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSCSSEEE
T ss_pred EEEecCCCCeEEeEEcCCH-------HHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCCCCCEE
Confidence 7888888877778887764 67788888888886 46777777744 45666666666544
No 215
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=28.24 E-value=20 Score=29.99 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=14.2
Q ss_pred ceeceEEEEecCCCCCH
Q psy7060 128 VYLPCIYAYNKIDQISI 144 (160)
Q Consensus 128 vY~P~iyv~NKiD~is~ 144 (160)
.-.|+++|.||+|+...
T Consensus 291 ~~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 291 RGRASVVVFNKWDLVVH 307 (439)
T ss_dssp TTCEEEEEEECGGGSTT
T ss_pred cCCCEEEEEECccCCCc
Confidence 45799999999999853
No 216
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=27.62 E-value=29 Score=30.59 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=13.7
Q ss_pred eeceEEEEecCCCCCH
Q psy7060 129 YLPCIYAYNKIDQISI 144 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ 144 (160)
-+|.++++||+|+.+.
T Consensus 134 ~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 134 DTPILTFMNKLDRDIR 149 (529)
T ss_dssp TCCEEEEEECTTSCCS
T ss_pred CCCEEEEEcCcCCccc
Confidence 4799999999999853
No 217
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=26.91 E-value=49 Score=21.50 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=32.9
Q ss_pred cccCCCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhc-CcceeceEEEEe
Q psy7060 81 NSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINA-NRVYLPCIYAYN 137 (160)
Q Consensus 81 ~~~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~-nrvY~P~iyv~N 137 (160)
.++||--+.-...+..+..+|+..=.-+-+.+..+.++.-+.... +-...|+++++.
T Consensus 38 a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~ 95 (118)
T 1zma_A 38 RKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHIT 95 (118)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEE
T ss_pred CCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEE
Confidence 467887776667778888888743222222223333444333322 445679999885
No 218
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=26.86 E-value=28 Score=30.88 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=13.0
Q ss_pred eeceEEEEecCCCCC
Q psy7060 129 YLPCIYAYNKIDQIS 143 (160)
Q Consensus 129 Y~P~iyv~NKiD~is 143 (160)
=+|.|+|.||+|+.+
T Consensus 103 ~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 103 QVPVVVAVNKIDKPE 117 (501)
T ss_dssp TCCEEEEEECSSSST
T ss_pred CceEEEEEEeccccc
Confidence 369999999999974
No 219
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=26.48 E-value=85 Score=24.51 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=31.7
Q ss_pred cccCHHHHHHHHHH-cCccceEEEeecCCChhHHHHHHhc
Q psy7060 87 TQVNEKLVQLILHE-YKIFNAEVLFREDCNADELIDVINA 125 (160)
Q Consensus 87 ~~~~e~~V~~IL~E-YkI~NA~V~ired~t~DdliDvi~~ 125 (160)
..++.++++..-+. |.=.|+.+.+-+|++.|++...+..
T Consensus 160 ~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~ 199 (431)
T 3cx5_A 160 ENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIES 199 (431)
T ss_dssp HTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTT
T ss_pred hhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHH
Confidence 34567777777776 5778999999999999999998863
No 220
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=26.43 E-value=23 Score=31.87 Aligned_cols=16 Identities=44% Similarity=0.538 Sum_probs=13.5
Q ss_pred ceeceEEEEecCCCCC
Q psy7060 128 VYLPCIYAYNKIDQIS 143 (160)
Q Consensus 128 vY~P~iyv~NKiD~is 143 (160)
.-+|.|+|+||+|+.+
T Consensus 121 ~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 121 YRTPFVVAANKIDRIH 136 (594)
T ss_dssp TTCCEEEEEECGGGST
T ss_pred cCCeEEEEeccccccc
Confidence 3479999999999974
No 221
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=26.34 E-value=31 Score=30.53 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=27.4
Q ss_pred HHHHHHHcCccceEEEeecC--CC--hhHHHHHHhcCcceeceEEEEecCCCCCH
Q psy7060 94 VQLILHEYKIFNAEVLFRED--CN--ADELIDVINANRVYLPCIYAYNKIDQISI 144 (160)
Q Consensus 94 V~~IL~EYkI~NA~V~ired--~t--~DdliDvi~~nrvY~P~iyv~NKiD~is~ 144 (160)
|.+.|+ -.-.|.+.+... +- ..-+..... +.=+|.|.++||+|....
T Consensus 117 v~raL~--~~DgAvlVvda~~GV~~qT~~v~~~a~--~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 117 TYRVLT--AVDSALVVIDAAKGVEAQTRKLMDVCR--MRATPVMTFVNKMDREAL 167 (548)
T ss_dssp HHHHHH--SCSEEEEEEETTTBSCHHHHHHHHHHH--HTTCCEEEEEECTTSCCC
T ss_pred HHHHHH--hcCceEEEeecCCCcccccHHHHHHHH--HhCCceEEEEecccchhc
Confidence 445553 234566666543 21 233444443 444699999999998743
No 222
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=26.02 E-value=14 Score=28.90 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=13.0
Q ss_pred eeceEEEEecCCCCC
Q psy7060 129 YLPCIYAYNKIDQIS 143 (160)
Q Consensus 129 Y~P~iyv~NKiD~is 143 (160)
-+|+++|.||+|+..
T Consensus 110 ~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 110 GKPVVVALNMMDIAE 124 (256)
T ss_dssp CSCEEEEEECHHHHH
T ss_pred CCCEEEEEEChhcCC
Confidence 479999999999863
No 223
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=25.38 E-value=83 Score=22.70 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=32.6
Q ss_pred ccCCCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhc
Q psy7060 82 STCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINA 125 (160)
Q Consensus 82 ~~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~ 125 (160)
..+.+.+++...+++.-+.|++ + .+..++=++|.+++..
T Consensus 20 p~vdf~kL~~~tLrrY~r~y~L-~----~~~~~sK~qLa~aV~k 58 (94)
T 2ld7_A 20 PEVDLYQLQVNTLRRYKRHFKL-P----TRPGLNKAQLVEIVGC 58 (94)
T ss_dssp CCCCCSSSCHHHHHHHHHHTTC-C----CCSSCCHHHHHHHHHH
T ss_pred CCcCHHHCCHHHHHHHHHHhCC-C----CCCCCCHHHHHHHHHH
Confidence 3477889999999999999998 4 5678899999998864
No 224
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=25.25 E-value=83 Score=21.29 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=31.2
Q ss_pred cCCCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcceeceEEEEec
Q psy7060 83 TCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNK 138 (160)
Q Consensus 83 ~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY~P~iyv~NK 138 (160)
.||.- ..++++|++++|.=-++-+.++-.+-+-+..+. ++...|.|++=.+
T Consensus 32 ~Cp~C----~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~-g~~tvP~ifi~g~ 82 (109)
T 3ipz_A 32 MCGFS----NTVVQILKNLNVPFEDVNILENEMLRQGLKEYS-NWPTFPQLYIGGE 82 (109)
T ss_dssp SSHHH----HHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHH-TCSSSCEEEETTE
T ss_pred CChhH----HHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHH-CCCCCCeEEECCE
Confidence 47763 468999999999766666655422222222223 3556799987443
No 225
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=25.20 E-value=43 Score=28.41 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=14.2
Q ss_pred eeceEEEEecCCCCCHH
Q psy7060 129 YLPCIYAYNKIDQISIE 145 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~e 145 (160)
-+|.+++.||+|+.+.+
T Consensus 106 ~ipillvgNK~DL~~~~ 122 (331)
T 3r7w_B 106 SINIEVLIHKVDGLSED 122 (331)
T ss_dssp TCEEEEECCCCCSSCSH
T ss_pred CCcEEEEEECcccCchh
Confidence 37999999999998743
No 226
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=24.86 E-value=42 Score=28.20 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=13.6
Q ss_pred HHHHHhcCcceeceEEEEecCCCCCH
Q psy7060 119 LIDVINANRVYLPCIYAYNKIDQISI 144 (160)
Q Consensus 119 liDvi~~nrvY~P~iyv~NKiD~is~ 144 (160)
+.+.+.. .-+|.|+|.||+|+...
T Consensus 123 l~~~l~~--~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 123 VAKILYR--TKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHHTT--CCSCEEEEEECC-----
T ss_pred HHHHHHH--cCCCEEEEEECccchhh
Confidence 4444432 45799999999998744
No 227
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=24.35 E-value=16 Score=28.52 Aligned_cols=14 Identities=29% Similarity=0.252 Sum_probs=12.4
Q ss_pred eeceEEEEecCCCC
Q psy7060 129 YLPCIYAYNKIDQI 142 (160)
Q Consensus 129 Y~P~iyv~NKiD~i 142 (160)
-+|.++|.||+|+.
T Consensus 110 ~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 110 EKKVILAMTAIDEA 123 (258)
T ss_dssp TCCEEEEEECHHHH
T ss_pred CCCEEEEEECcCCC
Confidence 47999999999975
No 228
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=24.07 E-value=28 Score=29.54 Aligned_cols=30 Identities=37% Similarity=0.517 Sum_probs=26.2
Q ss_pred hhhcCccccccCCCccc-CHHHHHHHHHHcC
Q psy7060 73 KKAGGIAFNSTCPLTQV-NEKLVQLILHEYK 102 (160)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-~e~~V~~IL~EYk 102 (160)
-+.||..+=|||-+... ||+.|+.+|+++.
T Consensus 274 lkpGG~LVYsTCSl~~~ENE~vV~~~L~~~~ 304 (359)
T 4fzv_A 274 TKPGGHVVYSTCSLSHLQNEYVVQGAIELLA 304 (359)
T ss_dssp EEEEEEEEEEESCCCTTTTHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCchhhCHHHHHHHHHhCC
Confidence 36899999999999877 8899999998764
No 229
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=23.78 E-value=94 Score=20.78 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=30.2
Q ss_pred cccCCCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcceeceEEEE
Q psy7060 81 NSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAY 136 (160)
Q Consensus 81 ~~~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY~P~iyv~ 136 (160)
-++||.- ..++.+|.+.++.=.++-+.++-.+-+-...+.+....+|+|++=
T Consensus 23 ~~~Cp~C----~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi~ 74 (99)
T 3qmx_A 23 WSTCPFC----MRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFID 74 (99)
T ss_dssp CTTCHHH----HHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEET
T ss_pred cCCChhH----HHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEEC
Confidence 3456653 468888999988766666655422211112222256678999763
No 230
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=23.31 E-value=1.7e+02 Score=19.51 Aligned_cols=49 Identities=8% Similarity=0.048 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcceeceEEEEecC
Q psy7060 90 NEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKI 139 (160)
Q Consensus 90 ~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY~P~iyv~NKi 139 (160)
+.+.++..+++|++.-- ++...+-...++.+........+|+.+++++-
T Consensus 67 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~ 115 (151)
T 3raz_A 67 TSDNIGNFLKQTPVSYP-IWRYTGANSRNFMKTYGNTVGVLPFTVVEAPK 115 (151)
T ss_dssp CHHHHHHHHHHSCCSSC-EEEECCSCHHHHHHTTTCCSCCSSEEEEEETT
T ss_pred ChHHHHHHHHHcCCCCc-eEecCccchHHHHHHhCCccCCCCEEEEECCC
Confidence 46788999999987544 33344445666666655445678999999873
No 231
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=22.74 E-value=18 Score=27.88 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=11.9
Q ss_pred eceEEEEecCCCC
Q psy7060 130 LPCIYAYNKIDQI 142 (160)
Q Consensus 130 ~P~iyv~NKiD~i 142 (160)
+|.++|.||+|+.
T Consensus 110 ~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 110 KNIILVLNKFDLL 122 (271)
T ss_dssp CSEEEEEECHHHH
T ss_pred CCEEEEEEChhcC
Confidence 8999999999965
No 232
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=22.34 E-value=1e+02 Score=24.46 Aligned_cols=37 Identities=8% Similarity=0.075 Sum_probs=28.6
Q ss_pred ccCHHHHHHHHHH-cCccceEEEeecCCChhHHHHHHh
Q psy7060 88 QVNEKLVQLILHE-YKIFNAEVLFREDCNADELIDVIN 124 (160)
Q Consensus 88 ~~~e~~V~~IL~E-YkI~NA~V~ired~t~DdliDvi~ 124 (160)
.++.+.++..-+. |.=.|+.+.+-+|++.|++.+.+.
T Consensus 170 ~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~ 207 (443)
T 1hr6_B 170 SITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQ 207 (443)
T ss_dssp HCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHH
Confidence 3455666666665 677899999999999999887764
No 233
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=22.11 E-value=65 Score=22.74 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=42.4
Q ss_pred ccCHHHHHHHHHHc-CccceEE---------EeecCCChhHHHHHHhcCcceeceEEEEecCCCCCHHHHHHHhc
Q psy7060 88 QVNEKLVQLILHEY-KIFNAEV---------LFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIAR 152 (160)
Q Consensus 88 ~~~e~~V~~IL~EY-kI~NA~V---------~ired~t~DdliDvi~~nrvY~P~iyv~NKiD~is~eevd~i~~ 152 (160)
++||++++.++.+| .+.++.+ .+..+-.++.-|+.+++-+++=-.|.| +..+.+|++++..
T Consensus 18 ~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V----~~A~e~~~~~~~~ 88 (89)
T 2wbr_A 18 QIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFA----ESPSENEVQSIMQ 88 (89)
T ss_dssp TCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEE----ECCCHHHHHHHHC
T ss_pred cCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEE----EECCHHHHHHHhh
Confidence 48899999999999 4455443 344445667777888877777777654 2337888888754
No 234
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=22.08 E-value=82 Score=26.67 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=23.6
Q ss_pred CcceEEecccCCc-hhhHHHHHHHHHHhh
Q psy7060 39 AGGIAFNSTCPLT-QVNEKLVQLILHEYK 66 (160)
Q Consensus 39 ~GGI~i~~t~~lt-~~~~~~v~~~l~~yk 66 (160)
.||.=+-+||.+. .=||+.|+.||.++.
T Consensus 276 pGG~LVYsTCSl~~~ENE~vV~~~L~~~~ 304 (359)
T 4fzv_A 276 PGGHVVYSTCSLSHLQNEYVVQGAIELLA 304 (359)
T ss_dssp EEEEEEEEESCCCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCchhhCHHHHHHHHHhCC
Confidence 4899999999876 348999999998765
No 235
>3l9q_A DNA primase large subunit; POL alpha, DNA replication, polymerase, iron-sulfur DNA-binding, DNA-directed RNA polymerase, iron, iron-sulfur binding; HET: DNA; 1.70A {Homo sapiens} PDB: 3q36_A*
Probab=21.93 E-value=25 Score=28.41 Aligned_cols=38 Identities=21% Similarity=0.552 Sum_probs=29.3
Q ss_pred ccCCCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCc
Q psy7060 82 STCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANR 127 (160)
Q Consensus 82 ~~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nr 127 (160)
--||..+.|.+..++.|..|++... .++++++...++.
T Consensus 113 HGCPfr~~~~~~L~~~L~~~~v~~~--------~i~~I~~~~~~~~ 150 (195)
T 3l9q_A 113 HGCPFRHSDPELLKQKLQSYKISPG--------GISQILDLVKGTH 150 (195)
T ss_dssp CSCHHHHSCHHHHHHHHHHTTCCHH--------HHHHHHHHHHTTC
T ss_pred CCCCccCCCHHHHHHHHHHcCCCHH--------HHHHHHHHHhcCc
Confidence 4699999999999999999997432 2467777766543
No 236
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=21.88 E-value=1e+02 Score=21.73 Aligned_cols=49 Identities=24% Similarity=0.289 Sum_probs=31.7
Q ss_pred cCCCcccCHHHHHHHHHHcCcc-ceEEEeecCCChhHHHHHHh--cCcceeceEEEEec
Q psy7060 83 TCPLTQVNEKLVQLILHEYKIF-NAEVLFREDCNADELIDVIN--ANRVYLPCIYAYNK 138 (160)
Q Consensus 83 ~~~~~~~~e~~V~~IL~EYkI~-NA~V~ired~t~DdliDvi~--~nrvY~P~iyv~NK 138 (160)
+||.- ..++++|+++++. =.++-+.+| +++.+.+. .++...|+|++=.+
T Consensus 34 ~Cp~C----~~ak~lL~~~gv~~~~~vdV~~d---~~~~~~l~~~tg~~tvP~vfI~g~ 85 (118)
T 2wem_A 34 QCGFS----NAVVQILRLHGVRDYAAYNVLDD---PELRQGIKDYSNWPTIPQVYLNGE 85 (118)
T ss_dssp SSHHH----HHHHHHHHHTTCCCCEEEESSSC---HHHHHHHHHHHTCCSSCEEEETTE
T ss_pred ccHHH----HHHHHHHHHcCCCCCEEEEcCCC---HHHHHHHHHHhCCCCcCeEEECCE
Confidence 58864 4689999999984 555655554 23333332 24667899987554
No 237
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=21.81 E-value=1.6e+02 Score=18.66 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCceeccCCCCeEEEEecCcc
Q psy7060 11 RGLLEKELESVGIRLNKKKPNIYFKQKKAGG 41 (160)
Q Consensus 11 ~~~le~ELe~~GIrLnkk~p~I~ikkk~~GG 41 (160)
..-+.+.|+..|-.+.+.+++=.+-+...|.
T Consensus 7 ~~elik~L~~~G~~~~r~~GSH~~~~~~~~~ 37 (70)
T 1whz_A 7 PEEVARKLRRLGFVERMAKGGHRLYTHPDGR 37 (70)
T ss_dssp HHHHHHHHHHTTCEEEEEETTEEEEECTTSC
T ss_pred HHHHHHHHHHCCCEEeCCCCCCceEecCCCC
Confidence 3457888999999876655554443344444
No 238
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=21.72 E-value=42 Score=30.49 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.7
Q ss_pred eeceEEEEecCCCCCH
Q psy7060 129 YLPCIYAYNKIDQISI 144 (160)
Q Consensus 129 Y~P~iyv~NKiD~is~ 144 (160)
-+|.|+++||+|+.+.
T Consensus 127 ~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 127 GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp TCCEEEEEECTTSTTC
T ss_pred CCCEEEEEECCCcccc
Confidence 4699999999999853
No 239
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=21.53 E-value=1.1e+02 Score=21.07 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=31.6
Q ss_pred ccCCCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHh--cCcceeceEEEEec
Q psy7060 82 STCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVIN--ANRVYLPCIYAYNK 138 (160)
Q Consensus 82 ~~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~--~nrvY~P~iyv~NK 138 (160)
++||.. ..++++|.+++|.=-++-+.+| .++.+.+. .++...|+|++=.+
T Consensus 29 ~~Cp~C----~~ak~~L~~~gi~y~~~di~~d---~~~~~~l~~~~g~~tvP~ifi~g~ 80 (111)
T 3zyw_A 29 PRCGFS----KQMVEILHKHNIQFSSFDIFSD---EEVRQGLKAYSSWPTYPQLYVSGE 80 (111)
T ss_dssp BSSHHH----HHHHHHHHHTTCCCEEEEGGGC---HHHHHHHHHHHTCCSSCEEEETTE
T ss_pred CcchhH----HHHHHHHHHcCCCeEEEECcCC---HHHHHHHHHHHCCCCCCEEEECCE
Confidence 567753 4688999999987666655554 23333332 24566899987444
No 240
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=21.52 E-value=1.1e+02 Score=21.44 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=30.3
Q ss_pred cCCCcccCHHHHHHHHHHcCccc---eEEEeecCCChhHHHHHHh--cCcceeceEEEEec
Q psy7060 83 TCPLTQVNEKLVQLILHEYKIFN---AEVLFREDCNADELIDVIN--ANRVYLPCIYAYNK 138 (160)
Q Consensus 83 ~~~~~~~~e~~V~~IL~EYkI~N---A~V~ired~t~DdliDvi~--~nrvY~P~iyv~NK 138 (160)
.||.- ..++++|+++++.. .++-+.++ +++.+.+. .++...|.|++=.+
T Consensus 30 ~Cp~C----~~ak~lL~~~gv~~~~~~~~dv~~~---~~~~~~l~~~sg~~tvP~vfI~g~ 83 (121)
T 3gx8_A 30 KCGFS----RATIGLLGNQGVDPAKFAAYNVLED---PELREGIKEFSEWPTIPQLYVNKE 83 (121)
T ss_dssp CTTHH----HHHHHHHHHHTBCGGGEEEEECTTC---HHHHHHHHHHHTCCSSCEEEETTE
T ss_pred CCccH----HHHHHHHHHcCCCcceEEEEEecCC---HHHHHHHHHHhCCCCCCeEEECCE
Confidence 58763 46899999999863 23333333 34444443 24566799987554
No 241
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A
Probab=21.23 E-value=2.9e+02 Score=21.29 Aligned_cols=137 Identities=14% Similarity=0.022 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCceeccC-----CCCeEEEEecCcc---eEEecccCCchhhHHHHHHHHHHhhhhhhHHhhhcCccccc
Q psy7060 11 RGLLEKELESVGIRLNKK-----KPNIYFKQKKAGG---IAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNS 82 (160)
Q Consensus 11 ~~~le~ELe~~GIrLnkk-----~p~I~ikkk~~GG---I~i~~t~~lt~~~~~~v~~~l~~yki~n~~~~~~~~~~~~~ 82 (160)
-..+.++|++.||...-- +....+.-.+.|. ..+...++ .++++.++.++..+. ..-+.+.-+.++.
T Consensus 67 g~~i~~~l~~~gv~~~~v~~~~~~t~~~~~~~~~g~~~~~~~~~~g~--~~~~~~~~~~~~~~~---~~~~~~~~v~~~g 141 (320)
T 3ie7_A 67 LDKLYAILKEKHINHDFLVEAGTSTRECFVVLSDDTNGSTMIPEAGF--TVSQTNKDNLLKQIA---KKVKKEDMVVIAG 141 (320)
T ss_dssp HHHHHHHHHHTTCCBCCEEETTCCCEEEEEEEETTCSCCEEEECCCC--CCCHHHHHHHHHHHH---HHCCTTCEEEEES
T ss_pred HHHHHHHHHHcCCceEEEEecCCCCceEEEEEECCCceeEEEeCCCC--CCCHHHHHHHHHHHH---HHhcCCCEEEEeC
Confidence 457889999999865421 2222222222333 22222222 234556666665442 1223455566655
Q ss_pred cCCCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcceeceEEEEecCCCC---------CHHHHHHHhcC
Q psy7060 83 TCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKIDQI---------SIEEVDRIARQ 153 (160)
Q Consensus 83 ~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY~P~iyv~NKiD~i---------s~eevd~i~~~ 153 (160)
..| ...+.+.+..+++..+=.+.-|.+. .+.+.+.+.+.. .+.++..|.-+.. +.+++.++++.
T Consensus 142 ~~~-~~~~~~~~~~~~~~a~~~g~~v~~D--~~~~~l~~~l~~----~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~ 214 (320)
T 3ie7_A 142 SPP-PHYTLSDFKELLRTVKATGAFLGCD--NSGEYLNLAVEM----GVDFIKPNEDEVIAILDEKTNSLEENIRTLAEK 214 (320)
T ss_dssp CCC-TTCCHHHHHHHHHHHHHHTCEEEEE--CCHHHHHHHHHH----CCSEECCBTTGGGGGSCTTCCCHHHHHHHHTTT
T ss_pred CCC-CCCCHHHHHHHHHHHHhcCCEEEEE--CChHHHHHHHhc----CCeEEeeCHHHHHHHhCCCcCCCHHHHHHHHhh
Confidence 544 2456778888887666556666654 455666665532 4556666764432 24566666555
Q ss_pred CCceee
Q psy7060 154 PNSVVV 159 (160)
Q Consensus 154 p~~v~i 159 (160)
+..|+|
T Consensus 215 ~~~vvv 220 (320)
T 3ie7_A 215 IPYLVV 220 (320)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 555544
No 242
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=21.19 E-value=51 Score=26.58 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=19.8
Q ss_pred cCCCcccCHHHHHHHHHHcCc
Q psy7060 83 TCPLTQVNEKLVQLILHEYKI 103 (160)
Q Consensus 83 ~~~~~~~~e~~V~~IL~EYkI 103 (160)
-||..+.+++..++.|.+|++
T Consensus 115 GCPfr~~~~~~L~~~L~~~gv 135 (194)
T 3lgb_A 115 GCPFRDWSHERLSAELRSMKL 135 (194)
T ss_dssp SCHHHHSCHHHHHHHHHHTTC
T ss_pred CCCcCCCCHHHHHHHHHHcCC
Confidence 599999999999999999985
No 243
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=20.99 E-value=70 Score=24.85 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=28.1
Q ss_pred ccCHHHHHHHHHH-cCccceEEEeecCCChhHHHHHH
Q psy7060 88 QVNEKLVQLILHE-YKIFNAEVLFREDCNADELIDVI 123 (160)
Q Consensus 88 ~~~e~~V~~IL~E-YkI~NA~V~ired~t~DdliDvi 123 (160)
.++.++++...+. |.=.|+.+.+-+|++.+++.+.+
T Consensus 182 ~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~ 218 (425)
T 3d3y_A 182 EETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF 218 (425)
T ss_dssp HCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH
Confidence 3455666666665 45679999999999999999887
No 244
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=20.91 E-value=1e+02 Score=21.48 Aligned_cols=46 Identities=9% Similarity=0.096 Sum_probs=25.6
Q ss_pred HHHHHHHHHHcCccceEEEeecCCChhHHHHHHhc--CcceeceEEEEecC
Q psy7060 91 EKLVQLILHEYKIFNAEVLFREDCNADELIDVINA--NRVYLPCIYAYNKI 139 (160)
Q Consensus 91 e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~--nrvY~P~iyv~NKi 139 (160)
.+.++..+++|++.+-.++...+ .++...+.. ....+|+++++++-
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~P~~~lid~~ 153 (186)
T 1jfu_A 106 PEKPKTFLKEANLTRLGYFNDQK---AKVFQDLKAIGRALGMPTSVLVDPQ 153 (186)
T ss_dssp TTHHHHHHHHTTCCTTCCEECTT---CHHHHHHHTTTCCSSSSEEEEECTT
T ss_pred HHHHHHHHHHcCCCCCceEECCc---chHHHHhccccccCCCCEEEEECCC
Confidence 35677777888775544444333 223333221 11357999999763
No 245
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=20.83 E-value=1.1e+02 Score=24.47 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=28.3
Q ss_pred cCHHHHHHHHHH-cCccceEEEeecCCChhHHHHHHh
Q psy7060 89 VNEKLVQLILHE-YKIFNAEVLFREDCNADELIDVIN 124 (160)
Q Consensus 89 ~~e~~V~~IL~E-YkI~NA~V~ired~t~DdliDvi~ 124 (160)
++.++++..-+. |.=.|+.+.+-+|++.|++.+.+.
T Consensus 177 ~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~ 213 (446)
T 1pp9_A 177 LSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQ 213 (446)
T ss_dssp CCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHH
Confidence 455666666665 688899999999999999887764
No 246
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=20.61 E-value=1e+02 Score=20.62 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=18.1
Q ss_pred cCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcc
Q psy7060 89 VNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRV 128 (160)
Q Consensus 89 ~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrv 128 (160)
++++.+..+++.+-..+ .+.++.+|++..+..+..
T Consensus 134 ~~~~~~~~~~~~~D~~~-----dg~i~~~eF~~~~~~~~~ 168 (169)
T 3qrx_A 134 LTEEELQEMIAEADRND-----DNEIDEDEFIRIMKKTSL 168 (169)
T ss_dssp CCHHHHHHHHHHHCCSS-----SSCBCHHHHHHHHC----
T ss_pred CCHHHHHHHHHHhCCCC-----CCCEeHHHHHHHHHhccC
Confidence 45566666666654332 344677777776665543
No 247
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=20.33 E-value=1.8e+02 Score=22.73 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=32.4
Q ss_pred CCcccCHHHHHHHHHH-cCccceEEEeecCCChhHHHHHHh
Q psy7060 85 PLTQVNEKLVQLILHE-YKIFNAEVLFREDCNADELIDVIN 124 (160)
Q Consensus 85 ~~~~~~e~~V~~IL~E-YkI~NA~V~ired~t~DdliDvi~ 124 (160)
-|..++.++++...+. |.=.|+.+.+-+| +.+++...+.
T Consensus 182 ~l~~it~~~l~~f~~~~y~~~~~~l~v~G~-~~~~~~~~~~ 221 (439)
T 1pp9_B 182 RIGKVTPVELHDYVQNHFTSARMALIGLGV-SHPVLKQVAE 221 (439)
T ss_dssp GTTTCCHHHHHHHHHHHCSGGGEEEEEESS-CHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHhCCCCceEEEEeCC-CHHHHHHHHH
Confidence 3556788899988887 5677999999999 9999988775
No 248
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=20.01 E-value=1.6e+02 Score=22.11 Aligned_cols=58 Identities=17% Similarity=0.065 Sum_probs=48.0
Q ss_pred ccccccCCCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcceeceEEE
Q psy7060 78 IAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYA 135 (160)
Q Consensus 78 ~~~~~~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY~P~iyv 135 (160)
.+-|+|....+.+-+..-..+++.++..-|+....+.+++++-+.+...-+-+.++-+
T Consensus 12 ~~~~~~~~f~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~l~~~gl~~~~~~~ 69 (269)
T 3ngf_A 12 FAANLSTMFNEVPFLERFRLAAEAGFGGVEFLFPYDFDADVIARELKQHNLTQVLFNM 69 (269)
T ss_dssp EEEETTTSCTTSCHHHHHHHHHHTTCSEEECSCCTTSCHHHHHHHHHHTTCEEEEEEC
T ss_pred eeeechhhhccCCHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCcEEEEec
Confidence 4668888888899998889999999998888777778899999999888777666543
No 249
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=20.00 E-value=1.1e+02 Score=24.03 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=29.6
Q ss_pred ccCHHHHHHHHHH-cCccceEEEeecCCChhHHHHHHh
Q psy7060 88 QVNEKLVQLILHE-YKIFNAEVLFREDCNADELIDVIN 124 (160)
Q Consensus 88 ~~~e~~V~~IL~E-YkI~NA~V~ired~t~DdliDvi~ 124 (160)
.++.++++...+. |.=.|+.+.+-||++.|++...+.
T Consensus 171 ~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~ 208 (424)
T 3amj_B 171 KISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQ 208 (424)
T ss_dssp HCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHH
Confidence 4566667777765 567899999999999999988775
Done!