RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7060
(160 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.002
Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 51/166 (30%)
Query: 1 MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIA-FNSTCPLTQVN----- 54
ML + L +++++ + N P K I+ N +
Sbjct: 338 MLS-----I-SNLTQEQVQDYVNKTNSHLP-----AGKQVEISLVNGA---KNLVVSGPP 383
Query: 55 EKLVQLILH-----------EYKIFNAEQKKAGGIAF-NSTCP-----LTQVNEKLVQLI 97
+ L L L + +I +E+K F P L ++ + + +
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 98 LHEYKIFNAEVL------------FREDCN--ADELIDVINANRVY 129
+ FNA+ + R ++ ++D I V
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Score = 33.9 bits (77), Expect = 0.020
Identities = 38/225 (16%), Positives = 62/225 (27%), Gaps = 81/225 (36%)
Query: 1 M-LDA-TKQDVQRGLLEK----ELESVGIRL------NKKKPNIYFKQKKAGGIAFNSTC 48
M +D + + + ++ G + N I+F +K I N
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY-- 1688
Query: 49 PLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNS---TCPLTQVNEKLVQ--LILHEYKI 103
+ E +V L KIF + + F S TQ Q L L E
Sbjct: 1689 -SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF----TQPALTLMEKAA 1743
Query: 104 FN----------------------------AEVLFRED---------------CNADEL- 119
F A+V+ E DEL
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 120 -----IDVINANRVYLPCIYAYNKIDQISIEE-VDRIARQPNSVV 158
+ IN RV Q +++ V+R+ ++ +V
Sbjct: 1804 RSNYGMIAINPGRVAA-------SFSQEALQYVVERVGKRTGWLV 1841
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 29.9 bits (68), Expect = 0.31
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 79 AFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNA-DELIDVINANRVYLPCIYAYN 137
AF T L++ ++ +E L E + E++ I + P + N
Sbjct: 247 AFFVT--LSEAKY--SDALILVIDSTFSENLLIETLQSSFEILREIGVSGK--PILVTLN 300
Query: 138 KIDQISIEEVDRIARQP 154
KID+I+ + ++
Sbjct: 301 KIDKINGDLYKKLDLVE 317
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+],
cytoplasmic; two independent domains, GXGXXG motif,
oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A*
1wpq_A* 2pla_A*
Length = 354
Score = 29.5 bits (67), Expect = 0.46
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 99 HEYKIFNAEVL---FREDCNADELIDVINA---NRVYLP 131
+ F+ V F ED +L ++IN N YLP
Sbjct: 32 AQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLP 70
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI;
2.85A {Plasmodium falciparum}
Length = 375
Score = 26.8 bits (60), Expect = 3.1
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 100 EYKIFNAEVL---FREDCNADELIDVINA---NRVYLP 131
+F EV E N + ++D+IN N YL
Sbjct: 46 NNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLK 83
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 4.1
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 99 HEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKIDQI-SIEEVDRIARQPNSV 157
H + + E + D L +A C + I S EE+D I ++V
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis,
dimer, X-RAY diffraction, structural genomics, NPPSFA;
HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A
2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A*
1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A*
2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Length = 235
Score = 26.4 bits (59), Expect = 4.8
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 18 LESVGIRLNKKKPN-IYFKQKKAGGI 42
L+ I K PN + KK G+
Sbjct: 90 LKEFSIDGRIKWPNDVLVNYKKIAGV 115
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 26.5 bits (59), Expect = 4.9
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 112 EDCNADELIDVINANRVYL-PCIYAYNKIDQIS---IEEVDRIARQPNSVVV 159
+ D+L+ + R P + A NK D S I+ + R + +V+
Sbjct: 196 TKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLVREEEKRGYIVI 247
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.385
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,331,711
Number of extensions: 130191
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 11
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)