RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7060
         (160 letters)



>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 319

 Score = 33.4 bits (75), Expect = 0.008
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 72  QKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLP 131
           QK     A         VNE  V   +H+  +      + +D   D L       RV  P
Sbjct: 160 QKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQD---DLLAFASEIRRVNKP 216

Query: 132 CIYAYNKIDQISIEEVDRIARQPNS 156
            + A NK D  S E++ R+ R+   
Sbjct: 217 MVIAANKADAASDEQIKRLVREEEK 241


>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary
           alcohol dehydrogenase {Clostridium beijerinckii [TaxId:
           1520]}
          Length = 177

 Score = 26.1 bits (56), Expect = 2.0
 Identities = 6/27 (22%), Positives = 12/27 (44%)

Query: 134 YAYNKIDQISIEEVDRIARQPNSVVVR 160
           +A   I+++   E +R        +VR
Sbjct: 4   FAMLGINKLGWIEKERPVAGSYDAIVR 30


>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein
          Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 126

 Score = 25.4 bits (55), Expect = 2.2
 Identities = 8/56 (14%), Positives = 14/56 (25%), Gaps = 5/56 (8%)

Query: 14 LEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCP-----LTQVNEKLVQLILHE 64
          L      +G+ + +  P +        G A +         L  V    V      
Sbjct: 33 LTVGNLGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLR 88


>d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I
          {Escherichia coli [TaxId: 562]}
          Length = 115

 Score = 24.1 bits (52), Expect = 5.5
 Identities = 8/46 (17%), Positives = 15/46 (32%)

Query: 29 KPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKK 74
            ++  +   AG     +  P   V   L +L+     +   EQ  
Sbjct: 51 DISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQGESVAICEQIG 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.385 

Gapped
Lambda     K      H
   0.267   0.0452    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 564,694
Number of extensions: 24595
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 5
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.3 bits)