BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7061
(65 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
H+ L C S D ++TSAD+TA+IW+ + S + EL N V +AF+LD L
Sbjct: 1091 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG-CVRCSAFSLDGILL 1149
Query: 64 LT 65
T
Sbjct: 1150 AT 1151
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 10 HCVFSPDCRLLATTSADQTARIWN 33
HC FSPD LLA+ SAD T R+W+
Sbjct: 755 HCRFSPDDELLASCSADGTLRLWD 778
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 13 FSPDCRLLATTSADQTARIWNTEDFSLVR-------ELGTANQ-RWVWDAAFTLDSKFLL 64
FS D LLAT + RIWN D L+ E GTA WV D F+ DSK L+
Sbjct: 1142 FSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV 1201
Query: 65 T 65
+
Sbjct: 1202 S 1202
Score = 32.3 bits (72), Expect = 0.070, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLV 40
+ AH L C FS D +AT SAD+ +IW++ LV
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV 699
Score = 29.6 bits (65), Expect = 0.48, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 12 VFSPDCRLLATTSADQTARIWNTE 35
+FSPD T S DQT R+W T+
Sbjct: 896 MFSPDGSSFLTASDDQTIRVWETK 919
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
H+ L C S D ++TSAD+TA+IW+ + S + EL N V +AF+LD L
Sbjct: 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG-CVRCSAFSLDGILL 1142
Query: 64 LT 65
T
Sbjct: 1143 AT 1144
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 10 HCVFSPDCRLLATTSADQTARIWN 33
HC FSPD LLA+ SAD T R+W+
Sbjct: 748 HCRFSPDDELLASCSADGTLRLWD 771
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 13 FSPDCRLLATTSADQTARIWNTEDFSLVR-------ELGTANQ-RWVWDAAFTLDSKFLL 64
FS D LLAT + RIWN D L+ E GTA WV D F+ DSK L+
Sbjct: 1135 FSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV 1194
Query: 65 T 65
+
Sbjct: 1195 S 1195
Score = 32.3 bits (72), Expect = 0.070, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLV 40
+ AH L C FS D +AT SAD+ +IW++ LV
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV 692
Score = 29.6 bits (65), Expect = 0.49, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 12 VFSPDCRLLATTSADQTARIWNTE 35
+FSPD T S DQT R+W T+
Sbjct: 889 MFSPDGSSFLTASDDQTIRVWETK 912
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+ AH + FSPD + +A+ S D+T ++WN + L++ L T + VW AF+ D
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDG 69
Query: 61 KFL 63
+ +
Sbjct: 70 QTI 72
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+ H + FSPD + +A+ S D+T ++WN + L++ L T + VW AF+ D
Sbjct: 94 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDG 151
Query: 61 KFL 63
+ +
Sbjct: 152 QTI 154
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+ H + FSPD + +A+ S D+T ++WN + L++ L T + VW AF+ D
Sbjct: 504 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDG 561
Query: 61 KFL 63
+ +
Sbjct: 562 QTI 564
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+ H + FSPD + +A+ S D+T ++WN + L++ L T + VW AF+ D
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDD 438
Query: 61 KFL 63
+ +
Sbjct: 439 QTI 441
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+ H + FSPD + +A+ S D+T ++WN + L++ L T + VW AF+ D
Sbjct: 135 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDG 192
Query: 61 KFL 63
+ +
Sbjct: 193 QTI 195
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+ H + FSPD + +A+ S D+T ++WN L G ++ VW AF+ D
Sbjct: 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSS--VWGVAFSPDG 356
Query: 61 KFL 63
+ +
Sbjct: 357 QTI 359
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+ H + F PD + +A+ S D+T ++WN + L++ L T + VW AF+ D
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDG 315
Query: 61 KFL 63
+ +
Sbjct: 316 QTI 318
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+ H + FSPD + +A+ S D+T ++WN + L++ L T + V AF+ D
Sbjct: 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDG 520
Query: 61 KFL 63
+ +
Sbjct: 521 QTI 523
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWN 33
+ H + FSPD + +A+ S+D+T ++WN
Sbjct: 545 LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+ H + FSPD + +A+ S D+T ++WN + L++ L T + V AF+ D
Sbjct: 53 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDG 110
Query: 61 KFL 63
+ +
Sbjct: 111 QTI 113
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+ H + FSPD + +A+ S D+T ++WN + L++ L T + V AF+ D
Sbjct: 176 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDG 233
Query: 61 KFL 63
+ +
Sbjct: 234 QTI 236
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+ H + FSPD + +A+ S D+T ++WN + L++ L T + V AF+ D
Sbjct: 340 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDG 397
Query: 61 KFL 63
+ +
Sbjct: 398 QTI 400
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWN 33
+ H + FSPD + +A+ S D+T ++WN
Sbjct: 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+ H + FSPD + +A+ S D+T ++WN + L++ L T + V AF+ D
Sbjct: 422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDG 479
Query: 61 KFL 63
+ +
Sbjct: 480 QTI 482
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 10 HCVFSPDCRLLATTSADQTARIWN 33
HC FSPD +LLA+ SAD T ++W+
Sbjct: 754 HCRFSPDDKLLASCSADGTLKLWD 777
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
H+ L C S D ++TSAD+TA+IW+ + + EL N V +AF++DS L
Sbjct: 1090 HQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNG-CVRCSAFSVDSTLL 1148
Query: 64 LT 65
T
Sbjct: 1149 AT 1150
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLV 40
+ AH L C FS D R +AT S D+ +IWN+ LV
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELV 698
Score = 32.0 bits (71), Expect = 0.078, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 13 FSPDCRLLATTSADQTARIWNTEDFSLVR------ELGTANQ-RWVWDAAFTLDSKFLLT 65
FS D LLAT + RIWN + L+ E G A WV D F+ D K L++
Sbjct: 1141 FSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLIS 1200
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 12 VFSPDCRLLATTSADQTARIWNTE 35
+FSPD T+S DQT R+W T+
Sbjct: 895 MFSPDGSSFLTSSDDQTIRLWETK 918
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF 62
H + +C FSP L + +WNT+ S V + + WV F+ D
Sbjct: 844 GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADC-RGHLSWVHGVMFSPDGSS 902
Query: 63 LLT 65
LT
Sbjct: 903 FLT 905
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 32.3 bits (72), Expect = 0.064, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 13 FSPDCRLLATTSADQTARIWNTEDFSLV 40
FSPD + LAT + D+ RIW+ E+ +V
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIV 158
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A H FSP+ LA++SAD+ +IW D + + + ++ + D A++ DS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 80
Query: 61 KFLLT 65
L++
Sbjct: 81 NLLVS 85
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+ H Y C F+P L+ + S D++ RIW+ + ++ L
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A H FSP+ LA++SAD+ +IW D + + + ++ + D A++ DS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 80
Query: 61 KFLLT 65
L++
Sbjct: 81 NLLVS 85
Score = 30.0 bits (66), Expect = 0.34, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+ H Y C F+P L+ + S D++ RIW+ + ++ L
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A H FSP+ LA++SAD+ +IW D + + + ++ + D A++ DS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 83
Query: 61 KFLLT 65
L++
Sbjct: 84 NLLVS 88
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+ H Y C F+P L+ + S D++ RIW+ + ++ L
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A H FSP+ LA++SAD+ +IW D + + + ++ + D A++ DS
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 94
Query: 61 KFLLT 65
L++
Sbjct: 95 NLLVS 99
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+ H Y C F+P L+ + S D++ RIW+ + ++ L
Sbjct: 120 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 162
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 31.2 bits (69), Expect = 0.13, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A H FSP+ LA++SAD+ +IW D + + + ++ + D A++ DS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 83
Query: 61 KFLLT 65
L++
Sbjct: 84 NLLVS 88
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+ H Y C F+P L+ + S D++ RIW+ + ++ L
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein
Wdr5
Length = 311
Score = 31.2 bits (69), Expect = 0.13, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A H FSP+ LA++SAD+ +IW D + + + ++ + D A++ DS
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 76
Query: 61 KFLLT 65
L++
Sbjct: 77 NLLVS 81
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+ H Y C F+P L+ + S D++ RIW+ + ++ L
Sbjct: 102 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 144
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A H FSP+ LA++SAD+ +IW D + + + ++ + D A++ DS
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 99
Query: 61 KFLLT 65
L++
Sbjct: 100 NLLVS 104
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+ H Y C F+P L+ + S D++ RIW+ + ++ L
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 167
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A H FSP+ LA++SAD+ +IW D + + + ++ + D A++ DS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 77
Query: 61 KFLLT 65
L++
Sbjct: 78 NLLVS 82
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+ H Y C F+P L+ + S D++ RIW+ + ++ L
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A H FSP+ LA++SAD+ +IW D + + + ++ + D A++ DS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 83
Query: 61 KFLLT 65
L++
Sbjct: 84 NLLVS 88
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+ H Y C F+P L+ + S D++ RIW+ + ++ L
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein
Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein
Wdr5
Length = 308
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A H FSP+ LA++SAD+ +IW D + + + ++ + D A++ DS
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 73
Query: 61 KFLLT 65
L++
Sbjct: 74 NLLVS 78
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+ H Y C F+P L+ + S D++ RIW+ + ++ L
Sbjct: 99 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 141
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A H FSP+ LA++SAD+ +IW D + + + ++ + D A++ DS
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 78
Query: 61 KFLLT 65
L++
Sbjct: 79 NLLVS 83
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+ H Y C F+P L+ + S D++ RIW+ + ++ L
Sbjct: 104 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 146
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core
Complex Assembly And Regulation
Length = 317
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A H FSP+ LA++SAD+ +IW D + + + ++ + D A++ DS
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 82
Query: 61 KFLLT 65
L++
Sbjct: 83 NLLVS 87
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+ H Y C F+P L+ + S D++ RIW+ + ++ L
Sbjct: 108 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 150
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A H FSP+ LA++SAD+ +IW D + + + ++ + D A++ DS
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 101
Query: 61 KFLLT 65
L++
Sbjct: 102 NLLVS 106
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+ H Y C F+P L+ + S D++ RIW+ + ++ L
Sbjct: 127 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 169
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A H FSP+ LA++SAD+ +IW D + + + ++ + D A++ DS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 77
Query: 61 KFLLT 65
L++
Sbjct: 78 NLLVS 82
Score = 29.6 bits (65), Expect = 0.41, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+ H Y C F+P L+ + S D++ RIW+ + ++ L
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVR 41
+ AH L+ SPD R+L+T ++D+ + W D V+
Sbjct: 345 IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A H FSP+ LA++SAD+ +IW D + + + ++ + D A++ DS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 80
Query: 61 KFLLT 65
L++
Sbjct: 81 NLLVS 85
Score = 29.6 bits (65), Expect = 0.45, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTE 35
+ H Y C F+P L+ + S D++ RIW+ +
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A H FSP+ LA++SAD+ +IW D + + + ++ + D A++ DS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 80
Query: 61 KFLLT 65
L++
Sbjct: 81 NLLVS 85
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTE 35
+ H Y C F+P L+ + S D++ RIW+ +
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A H FSP+ LA +SAD+ +IW D + + + ++ + D A++ DS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 80
Query: 61 KFLLT 65
L++
Sbjct: 81 NLLVS 85
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+ H Y C F+P L+ + S D++ RIW+ + ++ L
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 4 HRAYGLHCVFSPDCR-LLATTSADQTARIWN 33
H+A H F+P C L+AT+S D T ++W+
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWD 233
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 4 HRAYGLHCVFSPDCR-LLATTSADQTARIWN 33
H+A H F+P C L+AT+S D T ++W+
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWD 232
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 3 AHRAYGLHCVFSPDCRLLATTSADQTARIWN 33
AH +SPD +A+ SAD+T +IWN
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
>pdb|3ULF|A Chain A, The Light State Structure Of The Blue-light
Photoreceptor Aureochrome1 Lov
pdb|3ULF|B Chain B, The Light State Structure Of The Blue-light
Photoreceptor Aureochrome1 Lov
pdb|3ULF|C Chain C, The Light State Structure Of The Blue-light
Photoreceptor Aureochrome1 Lov
pdb|3ULF|D Chain D, The Light State Structure Of The Blue-light
Photoreceptor Aureochrome1 Lov
pdb|3ULF|E Chain E, The Light State Structure Of The Blue-light
Photoreceptor Aureochrome1 Lov
pdb|3ULF|F Chain F, The Light State Structure Of The Blue-light
Photoreceptor Aureochrome1 Lov
Length = 170
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 14 SPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
SP+ L T + + RI D+SLV+ L A Q +V A D+ +
Sbjct: 16 SPEADTLLTDNPSKANRILEDPDYSLVKALQMAQQNFVITDASLPDNPIV 65
>pdb|3UE6|A Chain A, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|B Chain B, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|C Chain C, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|D Chain D, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|E Chain E, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|F Chain F, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 166
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 14 SPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
SP+ L T + + RI D+SLV+ L A Q +V A D+ +
Sbjct: 12 SPEADTLLTDNPSKANRILEDPDYSLVKALQMAQQNFVITDASLPDNPIV 61
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 9 LHCVFSPDCRLLATTSADQTARIWNT--EDFSLVRELGTANQRWV 51
L FS D R + + S D+T ++WNT E + E G ++ WV
Sbjct: 476 LSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 4 HRAYGLHCVFSPDCR-LLATTSADQTARIWN 33
H+ H +P C LAT S DQT +IW+
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWD 280
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 4 HRAYGLHCVFSPDCR-LLATTSADQTARIWN 33
H+ H +P C LAT S DQT +IW+
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWD 279
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 28.5 bits (62), Expect = 0.88, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 4 HRAYGLHCVFSPDCR-LLATTSADQTARIWN 33
H+ H +P C LAT S DQT +IW+
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWD 279
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 13 FSPDCRLLATTSADQTARIWNTEDFSLVREL 43
F +LLA+ SAD T ++W+ + F +R +
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTM 188
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
++ HR+ +F P ++ + S D T ++W+ E R L + V D +F
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHSG 162
Query: 61 KFL 63
K L
Sbjct: 163 KLL 165
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 10 HCVFSPDCRLLATTSADQTARIWNTED 36
H ++ P LLA++S D T RIW D
Sbjct: 158 HVIWHPSEALLASSSYDDTVRIWKDYD 184
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 12 VFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQR 49
VF P ++ + S D T +IWN+ + + + L +R
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 12 VFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQR 49
VF P ++ + S D T +IWN+ + + + L +R
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIW 32
+ H + L SPD +A+ +AD+T R+W
Sbjct: 371 LKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNT 34
H L FS D R + + S D+T ++WNT
Sbjct: 125 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+ H Y SPD L A++ D AR+W+ + E+
Sbjct: 192 LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM 234
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTE 35
H L FSPD R + + D R+WN +
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK 139
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNT 34
H L FS D R + + S D+T ++WNT
Sbjct: 102 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 134
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIW 32
+ H + L SPD +A+ +AD+T R+W
Sbjct: 360 LKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 12 VFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQR 49
VF P ++ + S D T +IWN+ + + + L +R
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 12 VFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQR 49
VF P ++ + S D T +IWN+ + + + L +R
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
>pdb|1VIZ|A Chain A, Crystal Structure Of An Hypothetical Protein
pdb|1VIZ|B Chain B, Crystal Structure Of An Hypothetical Protein
Length = 240
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 10 HCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+C+ +PDC+ A T AD + + ++ V EL
Sbjct: 120 YCIANPDCKAAALTEADADLNMDDIVAYARVSEL 153
>pdb|3VZX|A Chain A, Crystal Structure Of Pcrb From Bacillus Subtilis Subap.
Subtilis Str. 168
pdb|3VZX|B Chain B, Crystal Structure Of Pcrb From Bacillus Subtilis Subap.
Subtilis Str. 168
pdb|3VZY|A Chain A, Crystal Structure Of Pcrb Complexed With G1p From Bacillus
Subtilis Subap. Subtilis Str. 168
pdb|3VZY|B Chain B, Crystal Structure Of Pcrb Complexed With G1p From Bacillus
Subtilis Subap. Subtilis Str. 168
pdb|3VZZ|A Chain A, Crystal Structure Of Pcrb Complexed With Fspp From
Bacillus Subtilis Subap. Subtilis Str. 168
pdb|3VZZ|B Chain B, Crystal Structure Of Pcrb Complexed With Fspp From
Bacillus Subtilis Subap. Subtilis Str. 168
pdb|3W00|A Chain A, Crystal Structure Of Pcrb Complexed With G1p And Fspp From
Bacillus Subtilis Subap. Subtilis Str. 168
pdb|3W00|B Chain B, Crystal Structure Of Pcrb Complexed With G1p And Fspp From
Bacillus Subtilis Subap. Subtilis Str. 168
Length = 228
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 10 HCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+C+ +PDC+ A T AD + + ++ V EL
Sbjct: 118 YCIANPDCKAAALTEADADLNMDDIVAYARVSEL 151
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIW 32
+ H + L SPD +A+ +AD+T R+W
Sbjct: 280 LKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 13 FSPDCRLLATTSADQTARIWNTEDFSLVRE--LGTANQRWVWDAAFTLDSKFLLT 65
++P LLA+ D+ RIW TE S + + L +QR V A++ +L +
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLAS 78
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 16 DCRLLATTSADQTARIWNTEDFSLVREL 43
D + + + S D+T ++WNT VR L
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTL 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.132 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,839,106
Number of Sequences: 62578
Number of extensions: 48482
Number of successful extensions: 432
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 172
length of query: 65
length of database: 14,973,337
effective HSP length: 36
effective length of query: 29
effective length of database: 12,720,529
effective search space: 368895341
effective search space used: 368895341
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)