RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7061
(65 letters)
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 47.5 bits (111), Expect = 8e-09
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
H + L F+ + +T D W T + + + ++ V ++D K++
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS--SVLSCDISVDDKYI 321
Query: 64 LT 65
+T
Sbjct: 322 VT 323
Score = 34.4 bits (77), Expect = 4e-04
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 3 AHRAYGLHCVFSPDCRLLATTSADQTARIWN 33
+ L C S D + + T S D+ A ++
Sbjct: 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
Score = 34.0 bits (76), Expect = 4e-04
Identities = 7/65 (10%), Positives = 16/65 (24%), Gaps = 5/65 (7%)
Query: 4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQR----WVWDAAFTLD 59
H S R + T ++W+ + + ++ D
Sbjct: 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 60 SKFLL 64
L+
Sbjct: 109 GCTLI 113
Score = 22.5 bits (46), Expect = 5.6
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 5/61 (8%)
Query: 6 AYGLHCVFSPDCRLLATT-SADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL 64
AY H + D ++ D + L + V + ++ +
Sbjct: 12 AYSFH--VTADGQMQPVPFPPDALIGPGIPRHARQINTLN--HGEVVCAVTISNPTRHVY 67
Query: 65 T 65
T
Sbjct: 68 T 68
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 45.1 bits (105), Expect = 5e-08
Identities = 11/65 (16%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+ H + +F + + + + D+T R+W+ ++ ++ L A++ +V F +
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHKTA 301
Query: 61 KFLLT 65
+++T
Sbjct: 302 PYVVT 306
Score = 39.3 bits (90), Expect = 7e-06
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWD 53
HR+ +F P ++ + S D T ++W+ E R L + V D
Sbjct: 15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQD 64
Score = 33.2 bits (74), Expect = 8e-04
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIW 32
+ AH + F + T S DQT ++W
Sbjct: 285 LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
Score = 30.9 bits (68), Expect = 0.005
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
HR + + D L+A+ S DQT R+W EL ++ V ++ +S
Sbjct: 139 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL-REHRHVVECISWAPES 197
Query: 61 KFLLT 65
+
Sbjct: 198 SYSSI 202
Score = 30.5 bits (67), Expect = 0.009
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+ L + S D+T ++W+ + L + WV F
Sbjct: 201 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-VGHDNWVRGVLFHSGG 259
Query: 61 KFLLT 65
KF+L+
Sbjct: 260 KFILS 264
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 43.6 bits (101), Expect = 2e-07
Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 10 HCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT 65
FS RLL D +W+ L + V T D + T
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-AGHDNRVSCLGVTDDGMAVAT 329
Score = 35.5 bits (80), Expect = 1e-04
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWN 33
+A H + D +AT S D +IWN
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.4 bits (72), Expect = 0.002
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
H A + D RLL + S D IW++ + V + WV A+ ++
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPSGNYV 112
Score = 30.1 bits (66), Expect = 0.010
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARI-WNTEDFSLVRELGTANQRWVWDAAFTLD 59
H + F P+ AT S D T R+ D L+ + +F+
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 60 SKFLLT 65
+ LL
Sbjct: 282 GRLLLA 287
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 41.4 bits (95), Expect = 1e-06
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL--GTANQRWVWDAAFTLDS 60
A + Y P LL TS D + ++ + + +L + + F ++
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Query: 61 KFLL 64
+
Sbjct: 69 DLQI 72
Score = 36.8 bits (83), Expect = 5e-05
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 2/62 (3%)
Query: 4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
FSP + L T +D WN + ++ N+ V L
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV--KIACSDNIL 307
Query: 64 LT 65
Sbjct: 308 CL 309
Score = 27.5 bits (59), Expect = 0.086
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 11 CVFSPDCRLLATTSADQTARIWNTEDFSL 39
+ +L ++D T + D ++
Sbjct: 298 VKIACSDNILCLATSDDTFKTNAAIDQTI 326
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1
{Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 41.1 bits (94), Expect = 1e-06
Identities = 7/53 (13%), Positives = 13/53 (24%)
Query: 4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAF 56
H S D + L + A+ W+ R + +
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Score = 32.3 bits (71), Expect = 0.002
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 3 AHRAYGLHCVFSPDCRLLATTSADQTARIWN 33
AH ++ V + + + D + WN
Sbjct: 266 AHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Score = 28.0 bits (60), Expect = 0.058
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 10 HCVFSPDCRLLATTSADQTARIWNTEDFSLVREL-GTANQRWVWDAAFTLDSKFLLT 65
+SPD LAT S D + +WN S + A+ ++ L+ +++
Sbjct: 229 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVS 285
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 40.3 bits (92), Expect = 2e-06
Identities = 13/62 (20%), Positives = 25/62 (40%)
Query: 4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
H +SPD +A+ SAD+T +IWN + + + + + L
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296
Query: 64 LT 65
++
Sbjct: 297 VS 298
Score = 27.6 bits (59), Expect = 0.083
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTE 35
R + L + SA+ N E
Sbjct: 280 TRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
Score = 23.7 bits (49), Expect = 2.3
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTE 35
H SP A+ RIW+T
Sbjct: 57 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT 88
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 371
Score = 40.2 bits (92), Expect = 2e-06
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 11 CVFSPDCRLLATTSADQTARIWN--TEDFSLVRELGTANQRWVWDAAFTLDSKFLLT 65
++ D +A + I+ + V EL + V + DS ++T
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPDSNRIVT 68
Score = 30.6 bits (67), Expect = 0.007
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 3 AHRAYGLHCVFSPDCRLLATTSADQTARIWN 33
H ++PD + T D+ A +W
Sbjct: 49 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79
Score = 26.7 bits (57), Expect = 0.15
Identities = 7/38 (18%), Positives = 9/38 (23%), Gaps = 4/38 (10%)
Query: 3 AHRAYGLHCVFSPD----CRLLATTSADQTARIWNTED 36
H+ C TT D IW+
Sbjct: 323 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 39.0 bits (89), Expect = 7e-06
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 11 CVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD 59
+ + S D T ++W+ +R L + VW + +
Sbjct: 21 TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRDN 68
Score = 31.7 bits (70), Expect = 0.003
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 10 HCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT----ANQRWVWDAAFTLDSKFLLT 65
+ + T+S D T ++W+ + +R L T + VW +
Sbjct: 263 VTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322
Score = 26.7 bits (57), Expect = 0.16
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 10 HCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT 65
D + + S D + R+W+ E + + T + L L++
Sbjct: 180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH---TLTGHQSLTSGMELKDNILVS 232
Score = 24.0 bits (50), Expect = 1.6
Identities = 4/37 (10%), Positives = 8/37 (21%), Gaps = 4/37 (10%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTA----RIWN 33
S + A S + T + +
Sbjct: 301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 39.1 bits (89), Expect = 7e-06
Identities = 6/53 (11%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 11 CVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
+ + T + D+ R++++ + + +L + + VW + +
Sbjct: 17 TCLQFEDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHGGILV 68
Score = 32.6 bits (72), Expect = 0.002
Identities = 6/54 (11%), Positives = 14/54 (25%)
Query: 10 HCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
+ + ++ I+N LV + +W F +
Sbjct: 286 AITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVA 339
Score = 23.3 bits (48), Expect = 3.1
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFS 38
+ F L+A D + + DFS
Sbjct: 320 ILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL-DFS 355
Score = 21.8 bits (44), Expect = 9.2
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 10 HCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVW 52
V + + + T S D T +W S V + G + +
Sbjct: 101 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 143
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 39.0 bits (89), Expect = 8e-06
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 9 LHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF 62
L + + + + S D+ W+ + + + L ++ V A S
Sbjct: 312 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-QGHRNSVISVAVANGSSL 364
Score = 32.8 bits (73), Expect = 0.001
Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTA-----------NQR 49
H+ VF+ D + + + S D++ ++WN ++ + + T ++
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309
Query: 50 WVWDAAFTLDSKFLLT 65
+V A T + +++L+
Sbjct: 310 FVLSVATTQNDEYILS 325
Score = 32.1 bits (71), Expect = 0.002
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 6 AYGLHCVFSPDCRLLATTSADQTARIWNTE 35
A P+ + AT S D ARIW +
Sbjct: 357 AVANGSSLGPEYNVFATGSGDCKARIWKYK 386
Score = 30.5 bits (67), Expect = 0.007
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 18/79 (22%)
Query: 4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL-----------------GTA 46
H + FS D LAT ++T +++ D SLV L +
Sbjct: 61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 119
Query: 47 NQRWVWDAAFTLDSKFLLT 65
+ ++ F+ D KFL T
Sbjct: 120 SDLYIRSVCFSPDGKFLAT 138
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B
chain {Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 37.0 bits (84), Expect = 4e-05
Identities = 3/52 (5%), Positives = 14/52 (26%)
Query: 13 FSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL 64
+ T+ + + ++ + ++ A D++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY 55
Score = 34.7 bits (78), Expect = 2e-04
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
H Y + F L ++N + V+ +
Sbjct: 292 HTYYCV--AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329
Score = 29.7 bits (65), Expect = 0.016
Identities = 7/65 (10%), Positives = 16/65 (24%), Gaps = 3/65 (4%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
A + SP + ++ + L++ + + AF
Sbjct: 247 FADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKAANLDH--TYYCVAFDKKG 303
Query: 61 KFLLT 65
L
Sbjct: 304 DKLYL 308
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 35.6 bits (80), Expect = 1e-04
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 3/59 (5%)
Query: 4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL---GTANQRWVWDAAFTLD 59
S D + A ++ E ++ G A+ FT D
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336
Score = 27.1 bits (58), Expect = 0.12
Identities = 3/48 (6%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 18 RLLATTSADQTARIWNTEDFSLVRELGTANQ-RWVWDAAFTLDSKFLL 64
+ + + +TE ++ + + A+ +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAY 49
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1
(beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 34.4 bits (77), Expect = 3e-04
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 13 FSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAF 56
D + + + D T +IW+ R L T + V +
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY 63
Score = 27.1 bits (58), Expect = 0.12
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 13 FSPDCRLLATTSADQTARIWN 33
D + ++S D T IW+
Sbjct: 273 LQFDEFQIVSSSHDDTILIWD 293
Score = 23.3 bits (48), Expect = 3.3
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 11 CVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVW 52
RL+ + S+D T R+W+ E + +R L +
Sbjct: 182 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC 223
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 34.4 bits (78), Expect = 3e-04
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 10 HCVFSPDCRLLATTSADQTARIW--NTEDFSLVREL--GTANQRWVWDAAFTLDSKFLL 64
S R L D + ++ + V E+ G+ + + K+ +
Sbjct: 66 ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI 124
Score = 22.4 bits (47), Expect = 5.0
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 12 VFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL 64
V D + + +D + +++ + E Q V F D +
Sbjct: 335 VAVFDIKAMTGDGSDPEFKTLPIAEWAGITE----GQPRVVQGEFNKDGTEVW 383
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 32.8 bits (73), Expect = 0.001
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
+A HRA + +A + + + + + + + + D
Sbjct: 254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM--GHEIDSINVSQDE 311
Query: 61 KFLL 64
K LL
Sbjct: 312 KPLL 315
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 31.4 bits (69), Expect = 0.004
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 10 HCVFSPDCRLLATTSADQTARIWNTEDFSLVREL-GTANQRWVWDAAFTLDSKFLL 64
+ D + AT AD T R+W+ V++ Q +
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311
Score = 26.0 bits (55), Expect = 0.29
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 5/69 (7%)
Query: 2 AAHRAYGLHCVFSPDCRLLATTSADQTA-RIWNTED--FSLVRELGTANQRWVWDAAF-- 56
+ R + H + P +A R + D V + V F
Sbjct: 14 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73
Query: 57 TLDSKFLLT 65
S++L +
Sbjct: 74 IKGSQYLCS 82
Score = 22.2 bits (45), Expect = 6.6
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 11 CVFSPDCRLLATTSADQTARIWN 33
V + + + S D T +
Sbjct: 302 GVVATGNGRIISLSLDGTLNFYE 324
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 30.6 bits (67), Expect = 0.006
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 13 FSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWV 51
S D + + D + E R + T + V
Sbjct: 322 LSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360
Score = 29.8 bits (65), Expect = 0.012
Identities = 4/62 (6%), Positives = 12/62 (19%), Gaps = 5/62 (8%)
Query: 4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
V ++ + + + D + D K +
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN-----NLTDLRLSADRKTV 329
Query: 64 LT 65
+
Sbjct: 330 MV 331
Score = 27.1 bits (58), Expect = 0.12
Identities = 4/57 (7%), Positives = 13/57 (22%)
Query: 3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD 59
+ D ++ + + + + E N V+ +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRN 96
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 30.7 bits (67), Expect = 0.007
Identities = 9/54 (16%), Positives = 21/54 (38%)
Query: 10 HCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
+ L+AT S D I++ + + + A++ V + + S +
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLV 273
Score = 27.6 bits (59), Expect = 0.082
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWN 33
+ AH+ + ++ L ++ AD + WN
Sbjct: 254 LNAHKDGVNNLLWETPSTL-VSSGADACIKRWN 285
Score = 24.1 bits (50), Expect = 1.3
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 4/33 (12%)
Query: 3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTE 35
H +P L + S D W++
Sbjct: 11 GHNKGITALTVNP----LISGSYDGRIMEWSSS 39
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 30.3 bits (67), Expect = 0.009
Identities = 6/57 (10%), Positives = 16/57 (28%), Gaps = 4/57 (7%)
Query: 12 VFSPDCRLLATTSADQTARIW--NTEDFSLVRELGTAN--QRWVWDAAFTLDSKFLL 64
S R L D + ++ + V E+ + + ++ +
Sbjct: 68 RMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTI 124
Score = 23.8 bits (50), Expect = 2.0
Identities = 5/77 (6%), Positives = 17/77 (22%), Gaps = 15/77 (19%)
Query: 3 AHRAYGLHCVFSPDCRLLATTSA-------DQTARIWNTEDFSLVREL--------GTAN 47
L P L + Q+ +++ ++ ++
Sbjct: 301 GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG 360
Query: 48 QRWVWDAAFTLDSKFLL 64
+ V + +
Sbjct: 361 AKRVVQPEYNKRGDEVW 377
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 30.0 bits (66), Expect = 0.010
Identities = 5/65 (7%), Positives = 14/65 (21%), Gaps = 10/65 (15%)
Query: 6 AYGLHCVFSPDCRLLATT----------SADQTARIWNTEDFSLVRELGTANQRWVWDAA 55
+G +PD + + I + E+ + +
Sbjct: 17 GFGPGFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTLDHAGEIVIPAKHAQHVPS 76
Query: 56 FTLDS 60
+
Sbjct: 77 PYNTA 81
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 28.7 bits (62), Expect = 0.033
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTE 35
AH A + S D ++W+ +
Sbjct: 12 AHDADIFSVSACNS--FTVSCSGDGYLKVWDNK 42
Score = 27.9 bits (60), Expect = 0.078
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL 58
H ++ + F+ L + D R W+ + + L + + L
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL-NMHCDDIEIEEDIL 341
Score = 24.8 bits (52), Expect = 0.84
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 13 FSPDCRLLATTSADQTARIWNTEDFSLVREL 43
+ + L+ATTS + +++
Sbjct: 75 DAFELCLVATTSFSGDLLFYRITREDETKKV 105
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 26.4 bits (58), Expect = 0.23
Identities = 8/30 (26%), Positives = 8/30 (26%)
Query: 7 YGLHCVFSPDCRLLATTSADQTARIWNTED 36
LH F T D WN D
Sbjct: 313 GPLHTTFDGRGNAYTTLFIDSQVCKWNIAD 342
>d1qxma2 b.42.2.1 (A:149-286) Hemagglutinin component Ha1
{Clostridium botulinum D phage [TaxId: 29342]}
Length = 138
Score = 24.3 bits (52), Expect = 1.2
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 9/61 (14%)
Query: 5 RAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL 64
AY L C + L +++ + + + Q W + SK++L
Sbjct: 47 SAYTLKCQENNRY-LTWIQNSNNYVETYQST--------DSLIQYWNINYLDNDASKYIL 97
Query: 65 T 65
Sbjct: 98 Y 98
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 263
Score = 22.2 bits (47), Expect = 5.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 30 RIWNTEDFSLVRELG 44
R W EDF + R LG
Sbjct: 1 RQWALEDFEIGRPLG 15
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.132 0.438
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 237,456
Number of extensions: 7522
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 73
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.8 bits)