BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7062
(148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PA72|LST8_XENLA Target of rapamycin complex subunit lst8 OS=Xenopus laevis GN=mlst8
PE=2 SV=1
Length = 326
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 57/75 (76%), Gaps = 6/75 (8%)
Query: 27 MVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
M+AA GYQHIRMYD SNNPNPVIN +GVSKN+ VGF EDG+WM+TGGEDC ARIWDL
Sbjct: 56 MIAA-AGYQHIRMYDLNSNNPNPVINYDGVSKNITSVGFHEDGRWMYTGGEDCMARIWDL 114
Query: 87 SLCFIQ-----QVNA 96
+Q QVNA
Sbjct: 115 RSRNLQCQRIFQVNA 129
>sp|Q5I0B4|LST8_XENTR Target of rapamycin complex subunit lst8 OS=Xenopus tropicalis
GN=mlst8 PE=2 SV=1
Length = 326
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 57/75 (76%), Gaps = 6/75 (8%)
Query: 27 MVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
M+AA GYQHIRMYD SNNPNPVIN +GVSKN+ VGF EDG+WM+TGGEDC ARIWDL
Sbjct: 56 MIAA-AGYQHIRMYDLNSNNPNPVINYDGVSKNITSVGFHEDGRWMYTGGEDCMARIWDL 114
Query: 87 SLCFIQ-----QVNA 96
+Q QVNA
Sbjct: 115 RSRNLQCQRIFQVNA 129
>sp|Q803V5|LST8_DANRE Target of rapamycin complex subunit lst8 OS=Danio rerio GN=mlst8
PE=2 SV=1
Length = 326
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 57/75 (76%), Gaps = 6/75 (8%)
Query: 27 MVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
M+AA GYQHIRMYD SNNPNPVIN +GVSKN+ VGF EDG+WM+TGGEDC ARIWDL
Sbjct: 56 MIAA-AGYQHIRMYDLNSNNPNPVINYDGVSKNITSVGFHEDGRWMYTGGEDCMARIWDL 114
Query: 87 SLCFIQ-----QVNA 96
+Q QVNA
Sbjct: 115 RSRNLQCQRIFQVNA 129
>sp|Q9DCJ1|LST8_MOUSE Target of rapamycin complex subunit LST8 OS=Mus musculus GN=Mlst8
PE=1 SV=1
Length = 326
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 57/75 (76%), Gaps = 6/75 (8%)
Query: 27 MVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
M+AA GYQHIRMYD SNNPNP+I+ +GVSKN+ VGF EDG+WM+TGGEDC ARIWDL
Sbjct: 56 MIAA-AGYQHIRMYDLNSNNPNPIISYDGVSKNIASVGFHEDGRWMYTGGEDCTARIWDL 114
Query: 87 SLCFIQ-----QVNA 96
+Q QVNA
Sbjct: 115 RSRNLQCQRIFQVNA 129
>sp|Q9Z2K5|LST8_RAT Target of rapamycin complex subunit LST8 OS=Rattus norvegicus
GN=Mlst8 PE=1 SV=2
Length = 326
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 57/75 (76%), Gaps = 6/75 (8%)
Query: 27 MVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
M+AA G YQHIRMYD SNNPNP+I+ +GVSKN+ VGF EDG+WM+TGGEDC ARIWDL
Sbjct: 56 MIAATG-YQHIRMYDLNSNNPNPIISYDGVSKNIASVGFHEDGRWMYTGGEDCTARIWDL 114
Query: 87 SLCFIQ-----QVNA 96
+Q QVNA
Sbjct: 115 RSRNLQCQRIFQVNA 129
>sp|Q17QU5|LST8_BOVIN Target of rapamycin complex subunit LST8 OS=Bos taurus GN=MLST8
PE=2 SV=1
Length = 326
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 57/75 (76%), Gaps = 6/75 (8%)
Query: 27 MVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
M+AA GYQHIRMYD SNNPNP+I+ +GV+KNV VGF EDG+WM+TGGEDC ARIWDL
Sbjct: 56 MIAA-AGYQHIRMYDLNSNNPNPIISYDGVNKNVASVGFHEDGRWMYTGGEDCTARIWDL 114
Query: 87 SLCFIQ-----QVNA 96
+Q QVNA
Sbjct: 115 RSRNLQCQRIFQVNA 129
>sp|Q9BVC4|LST8_HUMAN Target of rapamycin complex subunit LST8 OS=Homo sapiens GN=MLST8
PE=1 SV=1
Length = 326
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 57/75 (76%), Gaps = 6/75 (8%)
Query: 27 MVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
M+AA GYQHIRMYD SNNPNP+I+ +GV+KN+ VGF EDG+WM+TGGEDC ARIWDL
Sbjct: 56 MIAA-AGYQHIRMYDLNSNNPNPIISYDGVNKNIASVGFHEDGRWMYTGGEDCTARIWDL 114
Query: 87 SLCFIQ-----QVNA 96
+Q QVNA
Sbjct: 115 RSRNLQCQRIFQVNA 129
>sp|Q9W328|LST8_DROME Protein LST8 homolog OS=Drosophila melanogaster GN=CG3004 PE=2 SV=2
Length = 313
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 39/54 (72%)
Query: 33 GYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
GYQ IR+YD SN PVIN +GV KNV +GFQEDG WMFT GED RIWD+
Sbjct: 56 GYQCIRLYDLESNCTAPVINFDGVQKNVTRLGFQEDGNWMFTAGEDHHVRIWDM 109
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 60 VVEVGFQEDGKWMFTGGEDCRARIWDL 86
V + F D KW+FT D AR+W L
Sbjct: 259 VWDAAFSADSKWLFTASSDGIARLWKL 285
>sp|Q29HG9|LST8_DROPS Protein LST8 homolog OS=Drosophila pseudoobscura pseudoobscura
GN=GA15597 PE=3 SV=1
Length = 315
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 39/54 (72%)
Query: 33 GYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
GYQ IR+YD SN PVIN +GV KNV +GFQEDG WMFT GED RIWD+
Sbjct: 54 GYQCIRLYDLESNCTAPVINFDGVQKNVTRLGFQEDGNWMFTAGEDHHVRIWDM 107
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 60 VVEVGFQEDGKWMFTGGEDCRARIWDL 86
V + F D KW+FT D AR+W L
Sbjct: 258 VWDAAFSADSKWLFTASSDGVARLWKL 284
>sp|P41318|LST8_YEAST Target of rapamycin complex subunit LST8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LST8 PE=1
SV=1
Length = 303
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 30 ALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLSLC 89
A G+Q++R+YD + NPNPV + EG NV V FQ+D +WM T ED ++WD+
Sbjct: 48 ATAGHQNVRLYDIRTTNPNPVASFEGHRGNVTSVSFQQDNRWMVTSSEDGTIKVWDVRSP 107
Query: 90 FIQQ-------VNALRITPDKQLLASAEE 111
I + VN + I P++ L S +
Sbjct: 108 SIPRNYKHNAPVNEVVIHPNQGELISCDR 136
>sp|Q54D08|LST8_DICDI Protein LST8 homolog OS=Dictyostelium discoideum GN=lst8 PE=1 SV=1
Length = 304
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 26 EMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWD 85
++ A G R+++ +NN +P ++ +G NV VGFQ++GKWM+TG ED +IWD
Sbjct: 45 KLYIAAAGNPQTRLFEVNTNNNSPAMSFDGHKGNVTGVGFQKEGKWMYTGSEDGTVKIWD 104
Query: 86 LSLCFIQQ-------VNALRITPDKQLLASAEE 111
L Q+ VN + + P++ L S ++
Sbjct: 105 LKAPGCQRDYECSAPVNTVVLHPNQAELISGDQ 137
>sp|O74184|WAT1_SCHPO WD repeat-containing protein wat1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=wat1 PE=1 SV=1
Length = 314
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 30 ALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLSLC 89
A G H+R+YD +++ P++ EG + NV + F DGKW+ T ED ++WD+
Sbjct: 56 AAAGNPHVRLYDINTSSQMPLMTFEGHTNNVTAIAFHCDGKWLATSSEDGTVKVWDMRAP 115
Query: 90 FIQQ-------VNALRITPDKQLLASAEE 111
+Q+ VN L I P++ L S ++
Sbjct: 116 SVQRNYDHKSPVNDLLIHPNQGELLSCDQ 144
>sp|O61585|KTNB1_STRPU Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus
purpuratus GN=KATNB1 PE=1 SV=1
Length = 690
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 54 EGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLSLCFIQQ--------VNALRITPDKQL 105
+G S V + F DGKW+ T ED ++WDL++ + Q V + P++ L
Sbjct: 140 KGHSDQVNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFKNHTGGVTGIEFHPNEFL 199
Query: 106 LAS 108
LAS
Sbjct: 200 LAS 202
>sp|O75529|TAF5L_HUMAN TAF5-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1
SV=1
Length = 589
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 16/76 (21%)
Query: 60 VVEVGFQEDGKWMFTGGEDCRARIWDLSLCFIQQ--------VNALRITPDKQLLASAE- 110
V+ + F +GK++ + GED R ++WDL+ + + + +L +PD L+ASA
Sbjct: 471 VLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSGLIASASM 530
Query: 111 -------ELSCCYCGA 119
++ YC A
Sbjct: 531 DNSVRVWDIRNTYCSA 546
>sp|O22212|PRP4L_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein
OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1
Length = 554
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 38 RMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS-----LCF-- 90
R++D N ++ EG S++V + FQ+DG + G D AR+WDL L F
Sbjct: 364 RLWDI--NTGAELLLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQG 421
Query: 91 -IQQVNALRITPDKQLLASAEELSCC 115
I+ V ++ +P+ LAS E + C
Sbjct: 422 HIKPVFSVNFSPNGYHLASGGEDNQC 447
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 54 EGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLSL 88
+G K V V F +G + +GGED + RIWDL +
Sbjct: 420 QGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRM 454
>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1
Length = 1526
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 50 VINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS--LCF------IQQVNALRITP 101
++ C+G + V VGF +DGK + +G +D R+WD+S C +V ++ +P
Sbjct: 899 LLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSP 958
Query: 102 DKQLLASA 109
+ +LAS
Sbjct: 959 NSLMLASG 966
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 27 MVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
M+A G Q +R++D S+ + +G + V V F DG + +G +D R+WD+
Sbjct: 1004 MLATGSGDQTVRLWDISSSQCFYIF--QGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDI 1061
Query: 87 S----LCFIQQ----VNALRITPDKQLLASA 109
S L +Q V ++ +PD +LAS
Sbjct: 1062 SSGNCLYTLQGHTSCVRSVVFSPDGAMLASG 1092
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 28 VAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS 87
+A+ G Q +R++D S+ ++ +G + V V F DG + +G D R+W+++
Sbjct: 1173 LASGSGDQTVRLWDISSSKCLYIL--QGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEIN 1230
Query: 88 ----LCFIQ----QVNALRITPDKQLLASA 109
LC Q VN++ PD +LAS
Sbjct: 1231 SSKCLCTFQGHTSWVNSVVFNPDGSMLASG 1260
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 27 MVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
M+A+ Q +R++D S N + +G + V V F DG + +GG+D R+WD+
Sbjct: 1046 MLASGSDDQTVRLWDISSGNC--LYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDI 1103
Query: 87 S 87
S
Sbjct: 1104 S 1104
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 27 MVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
M+A+ G Q +R+++ S+ + +G + V V F DG + +G +D R+W +
Sbjct: 1298 MLASGSGDQTVRLWEISSSKC--LHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSI 1355
Query: 87 S--------LCFIQQVNALRITPDKQLLASA 109
S L V ++ +PD +LAS
Sbjct: 1356 SSGECLYTFLGHTNWVGSVIFSPDGAILASG 1386
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 27 MVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
M+A+ G Q +R++D S N + +G + V + F +G + G D R+WD+
Sbjct: 1088 MLASGGDDQIVRLWDISSGNC--LYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDI 1145
Query: 87 S----LCFIQ----QVNALRITPDKQLLASA 109
S L +Q VNA+ +PD LAS
Sbjct: 1146 SSKKCLYTLQGHTNWVNAVAFSPDGATLASG 1176
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 16 STVFDSKHLVEMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTG 75
S VF L M+A+ Q +R++D S + +G + V V F DG + TG
Sbjct: 953 SVVFSPNSL--MLASGSSDQTVRLWDISSGECLYIF--QGHTGWVYSVAFNLDGSMLATG 1008
Query: 76 GEDCRARIWDL--SLCF-IQQ-----VNALRITPDKQLLASAEE 111
D R+WD+ S CF I Q V ++ + D +LAS +
Sbjct: 1009 SGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSD 1052
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 35 QHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLSLC----- 89
Q +R+++ N+ + +G + V V F DG + +G D R+WD+S
Sbjct: 1222 QTVRLWEI--NSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHT 1279
Query: 90 ---FIQQVNALRITPDKQLLASA 109
VN++ PD +LAS
Sbjct: 1280 FQGHTNWVNSVAFNPDGSMLASG 1302
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 35 QHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS----LCF 90
Q +R++D S + +G + V V F DG + +G D R+WD+S L
Sbjct: 1138 QIVRLWDISSKKC--LYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYI 1195
Query: 91 IQ----QVNALRITPDKQLLASA 109
+Q VN++ PD LAS
Sbjct: 1196 LQGHTSWVNSVVFNPDGSTLASG 1218
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 27 MVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
M+A+ + +R++D S+ + +G + V V F DG + +G D R+W++
Sbjct: 1256 MLASGSSDKTVRLWDISSSKC--LHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEI 1313
Query: 87 SLC--------FIQQVNALRITPDKQLLASAEE 111
S V+++ +PD +LAS +
Sbjct: 1314 SSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSD 1346
>sp|Q91WQ5|TAF5L_MOUSE TAF5-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2
SV=1
Length = 589
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 60 VVEVGFQEDGKWMFTGGEDCRARIWDLSLCFI--------QQVNALRITPDKQLLASA 109
V+ + F +GK++ + GED R ++WDL+ + + +L +PD L+ASA
Sbjct: 471 VLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIASA 528
>sp|Q54MT0|EIF3I_DICDI Eukaryotic translation initiation factor 3 subunit I
OS=Dictyostelium discoideum GN=eif3I PE=3 SV=1
Length = 331
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Query: 52 NCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL-------SLCFIQQVNALRITP-DK 103
C GV V + +D K++ T D +AR+WD+ S F ++ + DK
Sbjct: 49 QCGGV---VYSIDVSQDSKYLITASADAKARVWDVSSGRQLDSTDFEVSARSIEFSQGDK 105
Query: 104 QLLASAEELSCCYCGAAVFVYNSCYPAAVVASNTLVKPQ 142
Q+L +++ C VF ++ + S TL PQ
Sbjct: 106 QILVVTDQVMGCQAKIHVFDFDKDEVRKLNKSYTLPSPQ 144
>sp|Q55563|Y163_SYNY3 Uncharacterized WD repeat-containing protein sll0163 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=sll0163 PE=4 SV=1
Length = 1693
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 53 CEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL-SLCFI------QQVNALRITPDKQ 104
C+G + V F DG+W+ T D AR+WDL S CF VN +PD Q
Sbjct: 1174 CQGHTSWVRNAQFSPDGQWIVTCSADGTARLWDLSSQCFAVLKGHQNWVNNALWSPDGQ 1232
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 60 VVEVGFQEDGKWMFTGGEDCRARIWDL---SLCFIQ----QVNALRITPDKQLLASAEE 111
V E F DG+W+ TG D A++W++ L ++ V +R +PD Q + +A +
Sbjct: 1386 VREGQFSPDGQWIVTGSADKTAQLWNVLGKKLTVLRGHQDAVLNVRFSPDSQYIVTASK 1444
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 55 GVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS 87
G K V + F DG+++FT D AR WD+S
Sbjct: 1299 GHQKEVYDADFSADGRFVFTVSADQTARQWDIS 1331
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 8 ILTAFGQISTVFDSKHLVE--MVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGF 65
+LT G S V+ ++ E ++A + R++D + +G+ V V +
Sbjct: 1540 LLTLAGHQSIVYQARFSPEGNLIATVSADHTARLWDRSGKTVAVLYGHQGL---VGTVDW 1596
Query: 66 QEDGKWMFTGGEDCRARIWDLS 87
DG+ + T D AR+WDLS
Sbjct: 1597 SPDGQMLVTASNDGTARLWDLS 1618
>sp|A2QP30|LIS1_ASPNC Nuclear distribution protein nudF OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=nudF PE=3 SV=1
Length = 443
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 37 IRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS 87
IR++D + VI+ +G N V F DGKW+ TGG D A +W+++
Sbjct: 225 IRIWDVSTGYCVKVIDSQGSWINDVSPSF--DGKWLVTGGRDQAAMVWEVA 273
>sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog
OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3
Length = 837
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 54 EGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLSLCFI--------QQVNALRITPDKQL 105
+G ++ V + F DG+W+ +GGED ++WDL+ + Q+ +L P + L
Sbjct: 140 KGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFL 199
Query: 106 LASA 109
LA+
Sbjct: 200 LATG 203
>sp|Q9DAW6|PRP4_MOUSE U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus musculus GN=Prpf4
PE=2 SV=1
Length = 521
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 38 RMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
R++D + +++ EG S V ++ F +DG TGG D R+WDL
Sbjct: 347 RLWDLEAQEE--ILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDL 393
>sp|Q3MHE2|PRP4_BOVIN U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4
PE=2 SV=1
Length = 521
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 38 RMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
R++D + +++ EG S V ++ F +DG TGG D R+WDL
Sbjct: 347 RLWDLEAQEE--ILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDL 393
>sp|Q5NVD0|PRP4_PONAB U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii GN=PRPF4
PE=2 SV=1
Length = 521
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 38 RMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
R++D + +++ EG S V ++ F +DG TGG D R+WDL
Sbjct: 347 RLWDLEAQEE--ILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDL 393
>sp|O43172|PRP4_HUMAN U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4
PE=1 SV=2
Length = 522
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 38 RMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
R++D + +++ EG S V ++ F +DG TGG D R+WDL
Sbjct: 348 RLWDLEAQEE--ILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDL 394
>sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YMR102C PE=1 SV=1
Length = 834
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 23/81 (28%)
Query: 54 EGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL-----------------------SLCF 90
E SK + F DGK+M TG +D + RIW + S+
Sbjct: 170 EPTSKAIWSTKFSRDGKFMATGSKDGKIRIWKVIGSPVERAELDSSAESNKEARAKSMRI 229
Query: 91 IQQVNALRITPDKQLLASAEE 111
QQV++L +KQ L SA E
Sbjct: 230 KQQVSSLNNPKEKQFLDSATE 250
>sp|A7EKM8|LIS1_SCLS1 Nuclear distribution protein PAC1 OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=pac1 PE=3 SV=1
Length = 458
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 15/89 (16%)
Query: 60 VVEVGFQEDGKWMFTGGEDCRARIWDLSLCFIQQVNALRITPDKQLLASAEELSCCYCGA 119
V +V DG+W+ + G D ARIWD S P LL + CC
Sbjct: 255 VRDVAPSYDGRWLLSAGVDQTARIWDAS----------SGEPKATLLGHENTIECC---- 300
Query: 120 AVFVYNSCYPAAVVASNTLVKPQVTRAKE 148
VF + YP + P + + E
Sbjct: 301 -VFAPPASYPHLAAMAGLKKPPAASSSAE 328
>sp|Q09715|TUP11_SCHPO Transcriptional repressor tup11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tup11 PE=1 SV=1
Length = 614
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 51 INCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
+ C+G +V+ V F DG+ +G D RARIW +
Sbjct: 574 LTCQGHKNSVISVCFSPDGRQFASGSGDLRARIWSI 609
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 38 RMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLSLCFIQQV 94
+++ +P+P + V + F DGK++ TG ED + ++WDLS ++ V
Sbjct: 346 KLFTLHEESPDPSRDLY-----VRTIAFSPDGKYLVTGTEDRQIKLWDLSTQKVRYV 397
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 35 QHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWD-------LS 87
+ I+++D + V + G +++ + F +G+++ +G D AR+WD L
Sbjct: 382 RQIKLWDLSTQKVRYVFS--GHEQDIYSLDFSHNGRFIVSGSGDRTARLWDVETGQCILK 439
Query: 88 LCFIQQVNALRITPDKQLLA 107
L V A+ I+P+ Q +A
Sbjct: 440 LEIENGVTAIAISPNDQFIA 459
>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens
GN=KATNB1 PE=1 SV=1
Length = 655
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 26 EMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWD 85
E VA+ +I+++D V G S+ V + F DGKW+ + +D ++WD
Sbjct: 118 EFVASGSQDTNIKLWDIRRKGC--VFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWD 175
Query: 86 LSLCFIQQ--------VNALRITPDKQLLAS 108
L+ + VN + P++ LLAS
Sbjct: 176 LTAGKMMSEFPGHTGPVNVVEFHPNEYLLAS 206
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 26 EMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWD 85
E++ A IR++D + + G N+ + F G+++ +G +D ++WD
Sbjct: 76 ELIVAGSQSGSIRVWDLEAAKI--LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWD 133
Query: 86 LSL--CFI------QQVNALRITPDKQLLASAEE 111
+ C Q V LR +PD + LASA +
Sbjct: 134 IRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAAD 167
>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus
GN=Katnb1 PE=1 SV=1
Length = 658
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 26 EMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWD 85
E VA+ +I+++D V G S+ V + F DGKW+ + +D ++WD
Sbjct: 118 EFVASGSQDTNIKLWDIRRKGC--VFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWD 175
Query: 86 LSLCFIQQ--------VNALRITPDKQLLAS 108
L+ + VN + P++ LLAS
Sbjct: 176 LTAGKMMSEFPGHTGPVNVVEFHPNEYLLAS 206
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 26 EMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWD 85
E++ A IR++D + + G N+ + F G+++ +G +D ++WD
Sbjct: 76 ELIVAGSQSGSIRVWDLEAAKI--LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWD 133
Query: 86 LSL--CFI------QQVNALRITPDKQLLASAEE 111
+ C Q V LR +PD + LASA +
Sbjct: 134 IRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAAD 167
>sp|P78706|RCO1_NEUCR Transcriptional repressor rco-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rco-1 PE=4 SV=2
Length = 604
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 37 IRMYDFGSNNPNPVINC-EGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS-------L 88
IR++D S + N G +++ + F DG+ + +G D R+WD+ L
Sbjct: 368 IRVWDIQSRT---IRNTFHGHEQDIYSLDFSRDGRTIASGSGDRTVRLWDIETGQNTSVL 424
Query: 89 CFIQQVNALRITPDKQLLASA 109
V + I+PDKQ +A+
Sbjct: 425 SIEDGVTTVAISPDKQFVAAG 445
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 65 FQEDGKWMFTGGEDCRARIWDLSLCFI--------QQVNALRITPDKQLLASA 109
F DGK++ TG ED R+WD+ I Q + +L + D + +AS
Sbjct: 352 FSPDGKYLATGAEDKLIRVWDIQSRTIRNTFHGHEQDIYSLDFSRDGRTIASG 404
>sp|Q5RFF8|NLE1_PONAB Notchless protein homolog 1 OS=Pongo abelii GN=NLE1 PE=2 SV=3
Length = 485
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 54 EGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS 87
EG S+ V+ V F GK++ +G D R WDLS
Sbjct: 111 EGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLS 144
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 28 VAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS 87
+A+ G +R +D + P+ C+G V+ + + DGK + +G ++ + +WD S
Sbjct: 129 LASGSGDTTVRFWDLSTETPH--FTCKGHRHWVLSISWSPDGKKLASGCKNGQILLWDPS 186
>sp|Q8VEJ4|NLE1_MOUSE Notchless protein homolog 1 OS=Mus musculus GN=Nle1 PE=2 SV=4
Length = 485
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 54 EGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS 87
EG S+ V+ V F GK++ +G D R WDLS
Sbjct: 111 EGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLS 144
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 28 VAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS 87
+A+ G +R +D + P+ C+G V+ + + DGK + +G ++ + +WD S
Sbjct: 129 LASGSGDTTVRFWDLSTETPH--FTCKGHRHWVLSISWSPDGKKLASGCKNGQVLLWDPS 186
>sp|Q9NVX2|NLE1_HUMAN Notchless protein homolog 1 OS=Homo sapiens GN=NLE1 PE=1 SV=4
Length = 485
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 54 EGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS 87
EG S+ V+ V F GK++ +G D R WDLS
Sbjct: 111 EGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLS 144
>sp|Q58D20|NLE1_BOVIN Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=3
Length = 486
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 54 EGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS 87
EG S+ V+ V F GK++ +G D R WDLS
Sbjct: 112 EGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLS 145
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 28 VAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS 87
+A+ G +R +D + P+ C+G V+ + + DGK + +G ++ + +WD S
Sbjct: 130 LASGSGDTTVRFWDLSTETPH--FTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPS 187
>sp|Q4P2E9|ERB1_USTMA Ribosome biogenesis protein ERB1 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=ERB1 PE=3 SV=1
Length = 932
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 69 GKWMFTGGEDCRARIWDLSL 88
G W+ TGG+D RAR+WD+++
Sbjct: 569 GNWLVTGGDDGRARLWDVAI 588
>sp|A8XSW2|WDR48_CAEBR WD repeat-containing protein 48 homolog OS=Caenorhabditis briggsae
GN=CBG18038 PE=3 SV=3
Length = 691
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 34 YQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLSL 88
+Q IRM+D +N+ + G S NV + +DG + G D R+WD+ +
Sbjct: 203 HQQIRMFDPRTNDK--PMKMRGHSDNVRALLLNDDGTRALSAGSDGTIRLWDIGM 255
>sp|Q8WWQ0|PHIP_HUMAN PH-interacting protein OS=Homo sapiens GN=PHIP PE=1 SV=2
Length = 1821
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 27 MVAALGGYQHI-RMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIW 84
M A G HI R+Y FGS P + E + V + F +G D ARIW
Sbjct: 334 MFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSIQFSNTSNRFVSGSRDGTARIW 392
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 15 ISTVFDSKHLVEMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFT 74
S + K+ +E + YQH++M+ G +V V F G+ +FT
Sbjct: 151 FSRKLNGKYRLERLVPTAVYQHMKMHK----------RILGHLSSVYCVTFDRTGRRIFT 200
Query: 75 GGEDCRARIW 84
G +DC +IW
Sbjct: 201 GSDDCLVKIW 210
>sp|Q9UUG8|TUP12_SCHPO Transcriptional repressor tup12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tup12 PE=1 SV=2
Length = 598
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 60 VVEVGFQEDGKWMFTGGEDCRARIWDLSLCFI--------QQVNALRITPD-KQLLASAE 110
V V F DGK++ TG ED + RIWD++ + Q++ +L + D K L++ +
Sbjct: 349 VRSVAFSPDGKYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSG 408
Query: 111 ELSCC 115
+ + C
Sbjct: 409 DRTVC 413
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 42 FGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIW 84
+ ++P+ + +G + +V+ V +G TG D RARIW
Sbjct: 551 WSPDSPHSQLTLQGHNNSVISVAVSPNGHCFATGSGDLRARIW 593
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 35 QHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWD-------LS 87
Q IR++D ++ G + + + F +DGK + +G D +WD L
Sbjct: 368 QQIRIWDIAQKRVYRLLT--GHEQEIYSLDFSKDGKTLVSGSGDRTVCLWDVEAGEQKLI 425
Query: 88 LCFIQQVNALRITPDKQLLASA 109
L V + +PD Q +A+
Sbjct: 426 LHTDDGVTTVMFSPDGQFIAAG 447
>sp|O43815|STRN_HUMAN Striatin OS=Homo sapiens GN=STRN PE=1 SV=4
Length = 780
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 35 QHIRMYDFGSNNPNPVINCEGVS-KNVVEVGFQEDGKWMFTGGEDCRARIWDL-SLCFIQ 92
+HI+ YD NN +I+ + V + +G ++ +G DC R+W+L S IQ
Sbjct: 686 RHIKFYD---NNTGKLIHSMVAHLEAVTSLAVDPNGLYLMSGSHDCSIRLWNLESKTCIQ 742
Query: 93 QVNALRITPDKQLLASAEELSCCYCGAA 120
+ A R ++ + A S CY +A
Sbjct: 743 EFTAHRKKFEESIHDVAFHPSKCYIASA 770
>sp|Q8VDD9|PHIP_MOUSE PH-interacting protein OS=Mus musculus GN=Phip PE=1 SV=2
Length = 1821
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 27 MVAALGGYQHI-RMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIW 84
M A G HI R+Y FGS P + E + V + F +G D ARIW
Sbjct: 334 MFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSIQFSNTSNRFVSGSRDGTARIW 392
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 15 ISTVFDSKHLVEMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFT 74
S + K+ +E + YQH++M+ G +V V F G+ +FT
Sbjct: 151 FSRKLNGKYRLERLVPTAVYQHMKMHK----------RILGHLSSVYCVTFDRTGRRIFT 200
Query: 75 GGEDCRARIW 84
G +DC +IW
Sbjct: 201 GSDDCLVKIW 210
>sp|P70483|STRN_RAT Striatin OS=Rattus norvegicus GN=Strn PE=1 SV=1
Length = 780
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 35 QHIRMYDFGSNNPNPVINCEGVS-KNVVEVGFQEDGKWMFTGGEDCRARIWDL-SLCFIQ 92
+HI+ YD NN +I+ + V + +G ++ +G DC R+W+L S IQ
Sbjct: 686 RHIKFYD---NNTGKLIHSMVAHLEAVTSLAVDPNGLYLMSGSHDCSIRLWNLESKTCIQ 742
Query: 93 QVNALRITPDKQLLASAEELSCCYCGAA 120
+ A R ++ + A S CY +A
Sbjct: 743 EFTAHRKKFEESIHDVAFHPSKCYIASA 770
>sp|O55106|STRN_MOUSE Striatin OS=Mus musculus GN=Strn PE=1 SV=2
Length = 780
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 35 QHIRMYDFGSNNPNPVINCEGVS-KNVVEVGFQEDGKWMFTGGEDCRARIWDL-SLCFIQ 92
+HI+ YD NN +I+ + V + +G ++ +G DC R+W+L S IQ
Sbjct: 686 RHIKFYD---NNTGKLIHSMVAHLEAVTSLAVDPNGLYLMSGSHDCSIRLWNLESKTCIQ 742
Query: 93 QVNALRITPDKQLLASAEELSCCYCGAA 120
+ A R ++ + A S CY +A
Sbjct: 743 EFTAHRKKFEESIHDVAFHPSKCYIASA 770
>sp|P74442|Y143_SYNY3 Uncharacterized WD repeat-containing protein slr0143
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr0143 PE=4 SV=1
Length = 1191
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 55 GVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLSLCFIQ-------QVNALRITPDKQLLA 107
G + ++ V F +GK T G+D +IWDL +Q V ++ +PD ++LA
Sbjct: 599 GHTGSIYRVDFSPNGKIFATAGQDQTVKIWDLDGNLLQTLKGHQDSVYSVSFSPDGEILA 658
Query: 108 S 108
S
Sbjct: 659 S 659
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 26 EMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWD 85
E++A+ + +R++ + S V+ G +K+V + F DG+ + + D + R+WD
Sbjct: 655 EILASTSRDRTVRLWHWRSGKTLAVLG--GHTKSVDDAQFSPDGQTLVSVCRDGQIRLWD 712
Query: 86 LSLCFIQQVNALRIT-------PDKQLLASAEE 111
L I+Q + P+ LLA A +
Sbjct: 713 LDGNLIRQFGLPEVAFFGVNWHPNGNLLAVAAD 745
>sp|Q7ZUV2|KTNB1_DANRE Katanin p80 WD40 repeat-containing subunit B1 OS=Danio rerio
GN=katnb1 PE=2 SV=1
Length = 694
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 50 VINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS--------LCFIQQVNALRITP 101
V +G ++ V + F DGKW+ + +D ++WDL VN ++ P
Sbjct: 140 VFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHP 199
Query: 102 DKQLLAS 108
++ LLAS
Sbjct: 200 NEYLLAS 206
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 66 QEDGKWMFTGGEDCRARIWDLS 87
+ G+ + TGGEDCR IW +S
Sbjct: 30 KSSGRLLATGGEDCRVNIWAVS 51
>sp|C4YFX2|TUP1_CANAW Transcriptional repressor TUP1 OS=Candida albicans (strain WO-1)
GN=TUP1 PE=4 SV=1
Length = 511
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Query: 60 VVEVGFQEDGKWMFTGGEDCRARIWDLSLCFI--------QQVNALRITPDKQLLASAE- 110
+ V F DGK + TG ED RIWDLS I Q + +L PD L S
Sbjct: 257 IRSVCFSPDGKLLATGAEDKLIRIWDLSTKRIIKILRGHEQDIYSLDFFPDGDRLVSGSG 316
Query: 111 -------ELSCCYCGAAVFVYNSCYPAAVVASNTLV 139
+L C + + + AV L+
Sbjct: 317 DRSVRIWDLRTSQCSLTLSIEDGVTTVAVSPDGKLI 352
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 37 IRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWD-------LSLC 89
IR++D + ++ G +++ + F DG + +G D RIWD L+L
Sbjct: 278 IRIWDLSTKRIIKIL--RGHEQDIYSLDFFPDGDRLVSGSGDRSVRIWDLRTSQCSLTLS 335
Query: 90 FIQQVNALRITPDKQLLASA 109
V + ++PD +L+A+
Sbjct: 336 IEDGVTTVAVSPDGKLIAAG 355
>sp|P0CY34|TUP1_CANAL Transcriptional repressor TUP1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=TUP1 PE=1 SV=1
Length = 512
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Query: 60 VVEVGFQEDGKWMFTGGEDCRARIWDLSLCFI--------QQVNALRITPDKQLLASAE- 110
+ V F DGK + TG ED RIWDLS I Q + +L PD L S
Sbjct: 258 IRSVCFSPDGKLLATGAEDKLIRIWDLSTKRIIKILRGHEQDIYSLDFFPDGDRLVSGSG 317
Query: 111 -------ELSCCYCGAAVFVYNSCYPAAVVASNTLV 139
+L C + + + AV L+
Sbjct: 318 DRSVRIWDLRTSQCSLTLSIEDGVTTVAVSPDGKLI 353
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 37 IRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWD-------LSLC 89
IR++D + ++ G +++ + F DG + +G D RIWD L+L
Sbjct: 279 IRIWDLSTKRIIKIL--RGHEQDIYSLDFFPDGDRLVSGSGDRSVRIWDLRTSQCSLTLS 336
Query: 90 FIQQVNALRITPDKQLLASA 109
V + ++PD +L+A+
Sbjct: 337 IEDGVTTVAVSPDGKLIAAG 356
>sp|Q54PE0|PWP2_DICDI Periodic tryptophan protein 2 homolog OS=Dictyostelium discoideum
GN=pwp2 PE=3 SV=1
Length = 922
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 50 VINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS--LCFIQ------QVNALRITP 101
++ +G S N+ V + DG+ + TGGED + +IW+ + C+I V A++ +P
Sbjct: 351 ILKQQGHSYNMNTVAYSPDGQTIATGGEDGKVKIWNTTSGYCYITFTEHEGPVTAVKYSP 410
>sp|Q8NI36|WDR36_HUMAN WD repeat-containing protein 36 OS=Homo sapiens GN=WDR36 PE=1 SV=1
Length = 951
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 55 GVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLSL-----CFIQQVNALRI--TPDKQLLA 107
G + ++ F DG+W+ + DC R WDL CF+ L + +P LA
Sbjct: 620 GHQGQINDMAFSPDGRWLISAAMDCSIRTWDLPSGCLIDCFLLDSAPLNVSMSPTGDFLA 679
Query: 108 SAE 110
++
Sbjct: 680 TSH 682
>sp|Q5F3D7|UTP15_CHICK U3 small nucleolar RNA-associated protein 15 homolog OS=Gallus
gallus GN=UTP15 PE=2 SV=1
Length = 520
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 37 IRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
IR++D P + +G +K V VGF D +F+GG+D + +WD+
Sbjct: 104 IRLFDISGRAP--LRQFDGHTKAVHVVGFLSDKYRIFSGGDDYSSSLWDI 151
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,543,348
Number of Sequences: 539616
Number of extensions: 2042362
Number of successful extensions: 6640
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 6138
Number of HSP's gapped (non-prelim): 591
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)