RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7062
(148 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 45.1 bits (105), Expect = 7e-07
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 26 EMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWD 85
A R++D ++ + + + + V F + G+ + G +D +WD
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 86 LSLCFIQQ--------VNALRITPDKQLLASA 109
V+ L +T D +A+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Score = 41.3 bits (95), Expect = 1e-05
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 26 EMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWD 85
++ A + ++D + + G V +G +DG + TG D +IW+
Sbjct: 283 RLLLAGYDDFNCNVWD--ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.2 bits (74), Expect = 0.008
Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 12/85 (14%)
Query: 35 QHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLSLCFIQ-- 92
+++D G ++ + F +G TG +D R++DL
Sbjct: 206 ASAKLWDVREGMCRQTF--TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 93 --------QVNALRITPDKQLLASA 109
+ ++ + +LL +
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAG 288
Score = 31.6 bits (70), Expect = 0.028
Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 8/104 (7%)
Query: 34 YQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLSLCFIQQ 93
+ G + +V+ + D + +G D A++WD+ +Q
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 94 --------VNALRITPDKQLLASAEELSCCYCGAAVFVYNSCYP 129
+NA+ P+ A+ + + C
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Score = 24.3 bits (51), Expect = 6.8
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 54 EGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
G + + + D + + + +D + IWD
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS 84
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 44.7 bits (104), Expect = 9e-07
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 36 HIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLSLCFIQQ-- 93
I+M+D + ++ G V V F GK++ + +D R+WD +
Sbjct: 228 TIKMWDV--STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 285
Query: 94 ------VNALRITPDKQLLASA 109
V +L + +
Sbjct: 286 NAHEHFVTSLDFHKTAPYVVTG 307
Score = 40.1 bits (92), Expect = 4e-05
Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 26 EMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWD 85
+ + + + +R++D+ N + V + F + ++ TG D ++W+
Sbjct: 260 KFILSCADDKTLRVWDY--KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 36.3 bits (82), Expect = 7e-04
Identities = 10/42 (23%), Positives = 13/42 (30%)
Query: 46 NPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS 87
P G V V F M + ED ++WD
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE 47
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 371
Score = 42.2 bits (97), Expect = 7e-06
Identities = 13/68 (19%), Positives = 23/68 (33%)
Query: 26 EMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWD 85
+A + +Y+ N V + + V V + D + T G D A +W
Sbjct: 20 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79
Query: 86 LSLCFIQQ 93
L +
Sbjct: 80 LKGRTWKP 87
Score = 37.1 bits (84), Expect = 3e-04
Identities = 7/60 (11%), Positives = 17/60 (28%), Gaps = 10/60 (16%)
Query: 60 VVEVGFQEDGKWMFTGGEDCRARIWDLSLCFIQQ----------VNALRITPDKQLLASA 109
+ + +D + + I++ S Q V + PD + +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Score = 27.1 bits (58), Expect = 0.88
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 57 SKNVVEVGFQEDGKW----MFTGGEDCRARIWDLS 87
+V ++ GK T G D IWD+
Sbjct: 325 KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 41.5 bits (95), Expect = 1e-05
Identities = 7/61 (11%), Positives = 24/61 (39%)
Query: 27 MVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
+A + +++ + +P+I + + V + + + G+D + W++
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
Query: 87 S 87
Sbjct: 298 P 298
Score = 36.1 bits (81), Expect = 8e-04
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 54 EGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS 87
G +K + + DGK +F+ + WD+S
Sbjct: 9 YGHNKAITALSSSADGKTLFSADAEGHINSWDIS 42
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 39.8 bits (91), Expect = 4e-05
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 26 EMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWD 85
+ + G + + I S +V+ D K++ TG D +A +++
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGAS---IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
Query: 86 L 86
+
Sbjct: 335 V 335
Score = 39.4 bits (90), Expect = 5e-05
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 63 VGFQEDGKWMFTGGEDCRARIWDLS-------LCFIQQVNALRITPDKQLLASA 109
+ F GKW + G+D W V + I+ D + + +
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTG 324
Score = 36.7 bits (83), Expect = 5e-04
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 14/92 (15%)
Query: 51 INCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLSLCFIQQ-------------VNAL 97
IN + V V + ++TGG+ C ++WD+S + + +
Sbjct: 45 INTLNHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSC 103
Query: 98 RITPDKQLLASAEELSCCYCGAAVFVYNSCYP 129
++ PD L E S
Sbjct: 104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 36.7 bits (83), Expect = 5e-04
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 26 EMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVG------FQEDGKWMFTGGEDC 79
E + + + + +D + NP++ +G +V+ V + TG DC
Sbjct: 321 EYILSGSKDRGVLFWDK--KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC 378
Query: 80 RARIWDL 86
+ARIW
Sbjct: 379 KARIWKY 385
Score = 36.3 bits (82), Expect = 6e-04
Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 14/88 (15%)
Query: 36 HIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL--------- 86
+ + N+ + G V+ V ++ +++ +G +D WD
Sbjct: 287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML 346
Query: 87 -----SLCFIQQVNALRITPDKQLLASA 109
S+ + N + P+ + A+
Sbjct: 347 QGHRNSVISVAVANGSSLGPEYNVFATG 374
Score = 27.5 bits (59), Expect = 0.74
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 15/92 (16%)
Query: 33 GYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLSLCFIQ 92
G + + + DGK++ G D R+WD F+
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240
Query: 93 Q---------------VNALRITPDKQLLASA 109
+ V ++ T D Q + S
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272
Score = 25.9 bits (55), Expect = 2.1
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 60 VVEVGFQEDGKWMFTGGEDCRARIWDLSLC 89
V V F DG+++ TG + +++ +S
Sbjct: 65 VCCVKFSNDGEYLATGC-NKTTQVYRVSDG 93
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 36.8 bits (83), Expect = 5e-04
Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 6/70 (8%)
Query: 17 TVFDSKHLVEMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGG 76
+V + YD + V N+ ++ D K +
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV------TEVKNNLTDLRLSADRKTVMVRK 333
Query: 77 EDCRARIWDL 86
+D + + L
Sbjct: 334 DDGKIYTFPL 343
Score = 36.4 bits (82), Expect = 7e-04
Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 4/82 (4%)
Query: 32 GGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS---- 87
Y+ + + +I E E + E +D+
Sbjct: 251 DMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV 310
Query: 88 LCFIQQVNALRITPDKQLLASA 109
+ LR++ D++ +
Sbjct: 311 TEVKNNLTDLRLSADRKTVMVR 332
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 36.4 bits (82), Expect = 7e-04
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 8/73 (10%)
Query: 65 FQEDGKWMFTGGEDCRARIWDLSLCFIQQ--------VNALRITPDKQLLASAEELSCCY 116
Q + ++ TG +D R++D V AL+ L++ + + +
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 78
Query: 117 CGAAVFVYNSCYP 129
+
Sbjct: 79 WDIKKGCCTHVFE 91
Score = 28.7 bits (62), Expect = 0.26
Identities = 7/61 (11%), Positives = 19/61 (31%), Gaps = 9/61 (14%)
Query: 59 NVVEVGFQEDGKWMFTGGEDCRARIWDLS---------LCFIQQVNALRITPDKQLLASA 109
N+ + + G + + I++L L Q+ ++ + A
Sbjct: 283 NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVE 342
Query: 110 E 110
+
Sbjct: 343 K 343
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1
(beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 34.8 bits (78), Expect = 0.002
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 51 INC-EGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS 87
I+C SK V + + D + + +G D +IWD +
Sbjct: 8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKN 43
Score = 32.9 bits (73), Expect = 0.009
Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 9/85 (10%)
Query: 8 ILTAFGQISTVFDSKHLVEMVAALGGYQHIRMYDFGSN-------NPNPVINCEGVSKNV 60
+ G V + + + + I+++D + + S V
Sbjct: 211 LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 270
Query: 61 VEVGFQEDGKWMFTGGEDCRARIWD 85
+ F D + + D IWD
Sbjct: 271 FRLQF--DEFQIVSSSHDDTILIWD 293
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 34.1 bits (76), Expect = 0.003
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 26 EMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDG-KWMFTGGEDCRARIW 84
+ A +G IR++D ++ + +VG G + + D +
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Query: 85 DL 86
+L
Sbjct: 324 EL 325
Score = 29.1 bits (63), Expect = 0.17
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 27 MVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVE-VGF--QEDGKWMFTGGEDCRARI 83
+ G +R D G + PV+ G +VV V F + +++ +G E + +
Sbjct: 32 IAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 91
Query: 84 WDLS 87
W +
Sbjct: 92 WGWT 95
Score = 28.3 bits (61), Expect = 0.33
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 65 FQEDGKWMFTGGEDCRARIWDLS 87
D + T G D R+WD++
Sbjct: 259 SWLDSQKFATVGADATIRVWDVT 281
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 33.9 bits (76), Expect = 0.004
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 30 ALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS 87
G + YD +I + V F + G ++ GG +++
Sbjct: 267 IYGVLNRLAKYDLKQRK---LIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321
Score = 27.4 bits (59), Expect = 0.74
Identities = 4/54 (7%), Positives = 13/54 (24%), Gaps = 9/54 (16%)
Query: 65 FQEDGKWMFTGGEDCRARIWDLS---------LCFIQQVNALRITPDKQLLASA 109
+ ++M + D++ + + PD +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVL 57
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 34.0 bits (76), Expect = 0.005
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 45 NNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS 87
+G +V+ Q G + +G +D ++W
Sbjct: 4 GELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAV 45
Score = 30.6 bits (67), Expect = 0.071
Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 14/96 (14%)
Query: 27 MVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
++ + ++++D + + ++ V Q + ++ T +D ++WDL
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC-LQFNKNFVITSSDDGTVKLWDL 287
Query: 87 -------------SLCFIQQVNALRITPDKQLLASA 109
S V +R + K + A
Sbjct: 288 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 323
Score = 28.2 bits (61), Expect = 0.42
Identities = 5/59 (8%), Positives = 15/59 (25%), Gaps = 7/59 (11%)
Query: 36 HIRMYDFGSNNP---NPVINCEGVSKNVVEVGFQEDGKWMFTGGED----CRARIWDLS 87
++++D + + G V + G + + + D
Sbjct: 281 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 33.3 bits (74), Expect = 0.008
Identities = 1/28 (3%), Positives = 7/28 (25%)
Query: 60 VVEVGFQEDGKWMFTGGEDCRARIWDLS 87
+ ++ + D ++
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFD 41
Score = 32.9 bits (73), Expect = 0.010
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 63 VGFQEDGKWMFTGGEDCRARIWDL-------SLCFIQQVNALRITPDKQLLASA 109
+ F K+++T G D W+L + + + ++I +L A
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA 310
Score = 24.4 bits (51), Expect = 6.3
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 94 VNALRITPDKQLLASA 109
++ ++I P K LL
Sbjct: 14 ISDIKIIPSKSLLLIT 29
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 32.9 bits (73), Expect = 0.009
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 34 YQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDL 86
Y + +D N + + + V DG ++ GG +D
Sbjct: 259 YNVLESFDLEKNASIKRVP---LPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 32.6 bits (73), Expect = 0.014
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 7/114 (6%)
Query: 20 DSKHLVEMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDC 79
D +L L I + D S VI+ V G+++ G D
Sbjct: 29 DLPNL--FSVTLRDAGQIALVDGDSKKIVKVID---TGYAVHISRMSASGRYLLVIGRDA 83
Query: 80 RARIWDLSLCFIQQVNALRITPDKQLLASAEELSCCYCGAAVFVYNSCYPAAVV 133
R + DL +V ++I + + + S++ Y P +
Sbjct: 84 RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG--YEDRYTIAGAYWPPQFAI 135
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 32.2 bits (71), Expect = 0.018
Identities = 4/61 (6%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 26 EMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWD 85
+A+ + I++++ + I ++ +G + + + + +
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ-LGIIWTKQALVSISANGFINFVN 309
Query: 86 L 86
Sbjct: 310 P 310
Score = 32.2 bits (71), Expect = 0.020
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 65 FQEDGKWMFTGGEDCRARIWDLSLCFIQQ---------VNALRITPDKQLLASA 109
+ DG + + D +IW+++ +++ L I KQ L S
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 299
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 31.3 bits (69), Expect = 0.037
Identities = 7/54 (12%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 35 QHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGE-DCRARIWDLS 87
Q I +++ + V V + D ++++ G + R + ++
Sbjct: 14 QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 31.1 bits (68), Expect = 0.041
Identities = 6/50 (12%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 36 HIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWD 85
+I +Y + V + ++ + + G D + W+
Sbjct: 238 NIFIYSV-KRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285
Score = 27.6 bits (59), Expect = 0.51
Identities = 10/87 (11%), Positives = 27/87 (31%), Gaps = 7/87 (8%)
Query: 46 NPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLSLCF---IQQVNALRITPD 102
+ + G +K + + + +G D R W S + +L +
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA 57
Query: 103 KQLLASAEELSCCYCGAAVFVYNSCYP 129
++ + + + + G + S
Sbjct: 58 QEYSSISWDDTLKVNGITKHEFGSQPK 84
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 30.9 bits (69), Expect = 0.047
Identities = 18/127 (14%), Positives = 45/127 (35%), Gaps = 7/127 (5%)
Query: 20 DSKHLVEMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDC 79
D ++L L I + D + V++ V G+++F G D
Sbjct: 29 DLENL--FSVTLRDAGQIALIDGSTYEIKTVLD---TGYAVHISRLSASGRYLFVIGRDG 83
Query: 80 RARIWDLSLCFIQQVNALRITPDKQLLASAEELSCCYCGAAVFVYNSCYPAAVVASNTLV 139
+ + DL + V ++I + + + +++ + P V+ +
Sbjct: 84 KVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG--WEDKYAIAGAYWPPQYVIMDGETL 141
Query: 140 KPQVTRA 146
+P+ ++
Sbjct: 142 EPKKIQS 148
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 29.1 bits (63), Expect = 0.18
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 68 DGKWMFTGGEDCRARIWDLS 87
+ + D ++WD
Sbjct: 23 CNSFTVSCSGDGYLKVWDNK 42
Score = 25.2 bits (53), Expect = 3.8
Identities = 2/35 (5%), Positives = 7/35 (20%)
Query: 53 CEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLS 87
V + + T + ++
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRIT 97
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus
subtilis [TaxId: 1423]}
Length = 307
Score = 25.4 bits (54), Expect = 2.7
Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 43 GSNNPNPVINCEGVSKNVVEVGFQEDGKWMFTGGEDCRARIWDLSLCFIQQVNALRIT 100
G+ P V+ +++ + W+F GE + ++ ++ +++ + IT
Sbjct: 7 GTGAGIPAKA-RNVTSVALKLLEERRSVWLFDCGEATQHQMLHTTIKP-RKIEKIFIT 62
>d1s55a1 b.22.1.1 (A:161-316) TRANCE/RANKL cytokine {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 156
Score = 25.0 bits (54), Expect = 3.2
Identities = 5/33 (15%), Positives = 9/33 (27%), Gaps = 1/33 (3%)
Query: 101 PDKQLLASAEELSCCYCGAAVFVYNSCYPAAVV 133
P L + + G + F + S
Sbjct: 89 PSSHNLMKGGS-TKNWSGNSEFHFYSINVGGFF 120
>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase
(transcarboxylase 12S) {Propionibacterium freudenreichii
[TaxId: 1744]}
Length = 253
Score = 24.1 bits (51), Expect = 7.5
Identities = 11/66 (16%), Positives = 20/66 (30%)
Query: 7 GILTAFGQISTVFDSKHLVEMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNVVEVGFQ 66
G TA +++ + D E+ A + D + V+ G
Sbjct: 36 GKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAAS 95
Query: 67 EDGKWM 72
+D M
Sbjct: 96 QDFTVM 101
>d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein DsbB
{Escherichia coli [TaxId: 562]}
Length = 149
Score = 23.5 bits (50), Expect = 9.2
Identities = 12/86 (13%), Positives = 28/86 (32%)
Query: 1 MVAALGGILTAFGQISTVFDSKHLVEMVAALGGYQHIRMYDFGSNNPNPVINCEGVSKNV 60
++ A + + ++ + +A G Q + P+P C+ + +
Sbjct: 39 FGVLGAALIGAIAPKTPLRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFP 98
Query: 61 VEVGFQEDGKWMFTGGEDCRARIWDL 86
+ + +F D R WD
Sbjct: 99 EWLPLDKWVPQVFVASGDSAERQWDF 124
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal
domain {Paracoccus denitrificans [TaxId: 266]}
Length = 459
Score = 24.0 bits (52), Expect = 9.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 56 VSKNVVEVGFQEDGKWMFT 74
VS N+ +GKW F+
Sbjct: 191 VSGNLDNCDADYEGKWAFS 209
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 81
Score = 22.8 bits (49), Expect = 9.9
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 23 HLVEMVAALGGYQHIRMYDFGSNNPNPVI 51
+ + L G I + GS NP +
Sbjct: 31 AVPRAILELAGVTDILTKELGSRNPINIA 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.421
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 555,700
Number of extensions: 23916
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 59
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.8 bits)