BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7063
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 75/150 (50%), Gaps = 26/150 (17%)
Query: 65 VLFREDCNADELIDVINAN-RVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKXX 123
+ FR D D+LIDV+ A+ R Y+P IY NKID +SIEE++ + R PN+V +S
Sbjct: 227 IAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDSLSIEELELLYRIPNAVPISSGQDWN 286
Query: 124 XXXXXXXXXXXXXXXRVYTKKPGAPPDFDDGLILRKG----------------------- 160
R+YTK G PDF D ++LR
Sbjct: 287 LDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQIHKSLVDDFRNAL 346
Query: 161 --GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
G+S K+ PQ VGL+H++ DEDV+ I+KK
Sbjct: 347 VYGSSVKHQPQYVGLSHILEDEDVVTILKK 376
>pdb|2EKI|A Chain A, Solution Structures Of The Tgs Domain Of Human
Developmentally-Regulated Gtp-Binding Protein 1
Length = 93
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 25/75 (33%)
Query: 139 RVYTKKPGAPPDFDDGLILRKG-------------------------GTSTKYSPQRVGL 173
R+YTK G PD+ ++L G S K++PQ+VG
Sbjct: 13 RIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGK 72
Query: 174 AHVMADEDVIQIVKK 188
H + DEDVIQIVKK
Sbjct: 73 DHTLEDEDVIQIVKK 87
>pdb|2DUG|A Chain A, Crystal Structure Of A Green Fluorescent Protein S65tH148N
At Ph 5
pdb|2DUH|A Chain A, Crystal Structure Of A Green Fluorescent Protein Variant
S65tH148N AT PH 9.5
Length = 236
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 26/82 (31%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN--ADELIDVINANRVYL 87
+ED N +L N+N VY+
Sbjct: 129 KEDGNILGHKLEYNYNSNNVYI 150
>pdb|2B3P|A Chain A, Crystal Structure Of A Superfolder Green Fluorescent
Protein
Length = 244
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 26/91 (28%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDGTYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN--ADELIDVINANRVYLPCIYAYNKI 96
+ED N +L N++ VY+ N I
Sbjct: 129 KEDGNILGHKLEYNFNSHNVYITADKQKNGI 159
>pdb|1GFL|A Chain A, Structure Of Green Fluorescent Protein
pdb|1GFL|B Chain B, Structure Of Green Fluorescent Protein
Length = 238
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 26/92 (28%)
Query: 22 VLAYCWSKGTFQSYTSSINRHYYYKSA---------------------RA---YEADTLP 57
V + + F Y + RH ++KSA RA +E DTL
Sbjct: 61 VTTFSYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLV 120
Query: 58 SKLTLKNVLFREDCN--ADELIDVINANRVYL 87
+++ LK + F+ED N +L N++ VY+
Sbjct: 121 NRIELKGIDFKEDGNILGHKLEYNYNSHNVYI 152
>pdb|2Q6P|A Chain A, The Chemical Control Of Protein Folding: Engineering A
Superfolder Green Fluorescent Protein
Length = 236
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYXDHMKRHDFFKSAMXEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|1BFP|A Chain A, Blue Variant Of Green Fluorescent Protein
Length = 236
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 26/82 (31%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN--ADELIDVINANRVYL 87
+ED N +L N++ VY+
Sbjct: 129 KEDGNILGHKLEYNFNSHNVYI 150
>pdb|3EKJ|A Chain A, Calcium-Free Gcamp2 (Calcium Binding Deficient Mutant)
Length = 449
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 42 HYYYKSARAYEADTLPSKLTLKNVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISI 101
+Y ++ +E DTL +++ LK + F+ED N L YN DQ++
Sbjct: 261 NYKTRAEVKFEGDTLVNRIELKGIDFKEDGN-------------ILGHKLEYNTRDQLTE 307
Query: 102 EEV 104
E++
Sbjct: 308 EQI 310
>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1)
Length = 448
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 37/97 (38%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + +H ++KSA RA +E DTL +++ LK + F
Sbjct: 226 FSRYPDHMKQHDFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 285
Query: 68 REDCNADELIDVINANRVYLPCIYAYNKIDQISIEEV 104
+ED N L YN DQ++ E++
Sbjct: 286 KEDGN-------------ILGHKLEYNTRDQLTEEQI 309
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 42 HYYYKSARAYEADTLPSKLTLKNVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISI 101
+Y ++ +E DTL +++ LK + F+ED N L YN DQ++
Sbjct: 262 NYKTRAEVKFEGDTLVNRIELKGIDFKEDGN-------------ILGHKLEYNTRDQLTE 308
Query: 102 EEV 104
E++
Sbjct: 309 EQI 311
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 42 HYYYKSARAYEADTLPSKLTLKNVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISI 101
+Y ++ +E DTL +++ LK + F+ED N L YN DQ++
Sbjct: 261 NYKTRAEVKFEGDTLVNRIELKGIDFKEDGN-------------ILGHKLEYNTRDQLTE 307
Query: 102 EEV 104
E++
Sbjct: 308 EQI 310
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 42 HYYYKSARAYEADTLPSKLTLKNVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISI 101
+Y ++ +E DTL +++ LK + F+ED N L YN DQ++
Sbjct: 261 NYKTRAEVKFEGDTLVNRIELKGIDFKEDGN-------------ILGHKLEYNTRDQLTE 307
Query: 102 EEV 104
E++
Sbjct: 308 EQI 310
>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y
Length = 449
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 37/97 (38%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + +H ++KSA RA +E DTL +++ LK + F
Sbjct: 227 FSRYPDHMKQHDFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 286
Query: 68 REDCNADELIDVINANRVYLPCIYAYNKIDQISIEEV 104
+ED N L YN DQ++ E++
Sbjct: 287 KEDGN-------------ILGHKLEYNTRDQLTEEQI 310
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 42 HYYYKSARAYEADTLPSKLTLKNVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISI 101
+Y ++ +E DTL +++ LK + F+ED N L YN DQ++
Sbjct: 261 NYKTRAEVKFEGDTLVNRIELKGIDFKEDGN-------------ILGHKLEYNTRDQLTE 307
Query: 102 EEV 104
E++
Sbjct: 308 EQI 310
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 42 HYYYKSARAYEADTLPSKLTLKNVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISI 101
+Y ++ +E DTL +++ LK + F+ED N L YN DQ++
Sbjct: 227 NYKTRAEVKFEGDTLVNRIELKGIGFKEDGN-------------ILGHKLEYNSRDQLTE 273
Query: 102 EEV 104
E++
Sbjct: 274 EQI 276
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 42 HYYYKSARAYEADTLPSKLTLKNVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISI 101
+Y ++ +E DTL +++ LK + F+ED N L YN DQ++
Sbjct: 261 NYKTRAEVKFEGDTLVNRIELKGIDFKEDGN-------------ILGHKLEYNTRDQLTE 307
Query: 102 EEV 104
E++
Sbjct: 308 EQI 310
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 42 HYYYKSARAYEADTLPSKLTLKNVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISI 101
+Y ++ +E DTL +++ LK + F+ED N L YN DQ++
Sbjct: 227 NYKTRAEVKFEGDTLVNRIELKGIGFKEDGN-------------ILGHKLEYNTRDQLTE 273
Query: 102 EEV 104
E++
Sbjct: 274 EQI 276
>pdb|3P28|A Chain A, Structure Of A Circular Permutant Of Green Fluorescent
Protein
Length = 239
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 26/91 (28%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 21 FSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 80
Query: 68 REDCN--ADELIDVINANRVYLPCIYAYNKI 96
+ED N +L N++ VY+ N I
Sbjct: 81 KEDGNILGHKLEYNYNSHNVYITADKQKNGI 111
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 42 HYYYKSARAYEADTLPSKLTLKNVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISI 101
+Y ++ +E DTL +++ LK + F+ED N L YN DQ++
Sbjct: 224 NYKTRAEVKFEGDTLVNRIELKGIDFKEDGN-------------ILGHKLEYNTRDQLTE 270
Query: 102 EEV 104
E++
Sbjct: 271 EQI 273
>pdb|2Q57|A Chain A, X-Ray Structure Of Cerulean Gfp: A Tryptophan-Based
Chromophore Useful For Fluorescence Lifetime Imaging
Length = 254
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 87 FARYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 146
Query: 68 REDCN 72
+ED N
Sbjct: 147 KEDGN 151
>pdb|3G9A|A Chain A, Green Fluorescent Protein Bound To Minimizer Nanobody
Length = 236
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|1S6Z|A Chain A, Enhanced Green Fluorescent Protein Containing The Y66l
Substitution
pdb|1Z1P|A Chain A, Y66l Variant Of Enhanced Green Fluorescent Protein With
412- Nm Absorbing Chromophore
pdb|1Z1Q|A Chain A, Y66l Variant Of Enhanced Green Fluorescent Protein With
374- Nm Absorbing Chromophore
Length = 236
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|3UFZ|A Chain A, Crystal Structure Of A Trp-Less Green Fluorescent Protein
Translated By The Universal Genetic Code
pdb|3UG0|A Chain A, Crystal Structure Of A Trp-Less Green Fluorescent Protein
Translated By The Simplified Genetic Code
Length = 227
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|1KP5|A Chain A, Cyclic Green Fluorescent Protein
pdb|1KP5|B Chain B, Cyclic Green Fluorescent Protein
Length = 246
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 26/91 (28%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 79 FSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 138
Query: 68 REDCN--ADELIDVINANRVYLPCIYAYNKI 96
+ED N +L N++ VY+ N I
Sbjct: 139 KEDGNILGHKLEYNYNSHNVYITADKQKNGI 169
>pdb|2B3Q|A Chain A, Crystal Structure Of A Well-Folded Variant Of Green
Fluorescent Protein
pdb|2B3Q|B Chain B, Crystal Structure Of A Well-Folded Variant Of Green
Fluorescent Protein
pdb|2B3Q|C Chain C, Crystal Structure Of A Well-Folded Variant Of Green
Fluorescent Protein
pdb|2B3Q|D Chain D, Crystal Structure Of A Well-Folded Variant Of Green
Fluorescent Protein
Length = 244
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|2DUE|A Chain A, Crystal Structure Of A Green Fluorescent Protein Variant
S65tH148D AT PH 10
pdb|2DUF|A Chain A, Crystal Structure Of A Green Fluorescent Protein Variant
S65tH148D AT PH 5.6
pdb|2DUI|A Chain A, Crystal Structure Of A Green Fluorescent Protein Variant
H148d At Ph 9
Length = 236
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|1RM9|A Chain A, Probing The Role Of Tryptophans In Aequorea Victoria Green
Fluorescent Proteins With An Expanded Genetic Code
Length = 236
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|1EMM|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|2EMD|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|2EMN|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
Length = 237
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 70 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 129
Query: 68 REDCN 72
+ED N
Sbjct: 130 KEDGN 134
>pdb|2QLE|A Chain A, GfpS205V MUTANT
pdb|2QLE|B Chain B, GfpS205V MUTANT
pdb|2QLE|C Chain C, GfpS205V MUTANT
pdb|2QLE|D Chain D, GfpS205V MUTANT
Length = 236
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|1OXD|A Chain A, Expansion Of The Genetic Code Enables Design Of A Novel
"gold" Class Of Green Fluorescent Proteins
pdb|1OXE|A Chain A, Expansion Of The Genetic Code Enables Design Of A Novel
"gold" Class Of Green Fluorescent Proteins
Length = 227
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|1EMB| Chain , Green Fluorescent Protein (Gfp) From Aequorea Victoria,
Gln 80 Replaced With Arg
pdb|1EMG|A Chain A, Green Fluorescent Protein (65-67 Replaced By Cro, S65t
Substitution, Q80r)
pdb|1C4F|A Chain A, Green Fluorescent Protein S65t At Ph 4.6
pdb|1HCJ|A Chain A, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein
pdb|1HCJ|B Chain B, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein
pdb|1HCJ|C Chain C, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein
pdb|1HCJ|D Chain D, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein
pdb|1Q4A|A Chain A, S65t Q80r Green Fluorescent Protein (Gfp) Ph 8.5
pdb|1Q4B|A Chain A, S65t Q80r Green Fluorescent Protein (Gfp) Ph 5.5
pdb|1W7S|A Chain A, Wild-Type Aequorea Victoria Green Fluorescent Protein
pdb|1W7S|B Chain B, Wild-Type Aequorea Victoria Green Fluorescent Protein
pdb|1W7S|C Chain C, Wild-Type Aequorea Victoria Green Fluorescent Protein
pdb|1W7S|D Chain D, Wild-Type Aequorea Victoria Green Fluorescent Protein
pdb|1W7T|A Chain A, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein At 100 K
pdb|1W7T|B Chain B, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein At 100 K
pdb|1W7T|C Chain C, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein At 100 K
pdb|1W7T|D Chain D, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein At 100 K
pdb|1W7U|A Chain A, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein After Structural Annealing At 170k
pdb|1W7U|B Chain B, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein After Structural Annealing At 170k
pdb|1W7U|C Chain C, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein After Structural Annealing At 170k
pdb|1W7U|D Chain D, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein After Structural Annealing At 170k
pdb|1EMB|A Chain A, Green Fluorescent Protein (Gfp) From Aequorea Victoria,
Gln 80 Replaced With Arg
Length = 236
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|1EMF|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|2EMO|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
Length = 237
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 70 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 129
Query: 68 REDCN 72
+ED N
Sbjct: 130 KEDGN 134
>pdb|3GJ1|A Chain A, Non Photoactivated State Of Pa-Gfp
pdb|3GJ1|B Chain B, Non Photoactivated State Of Pa-Gfp
pdb|3GJ1|C Chain C, Non Photoactivated State Of Pa-Gfp
pdb|3GJ1|D Chain D, Non Photoactivated State Of Pa-Gfp
pdb|3GJ2|A Chain A, Photoactivated State Of Pa-Gfp
pdb|3GJ2|B Chain B, Photoactivated State Of Pa-Gfp
pdb|3GJ2|C Chain C, Photoactivated State Of Pa-Gfp
pdb|3GJ2|D Chain D, Photoactivated State Of Pa-Gfp
Length = 229
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 70 FSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 129
Query: 68 REDCN 72
+ED N
Sbjct: 130 KEDGN 134
>pdb|1EMC|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EMC|B Chain B, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EMC|C Chain C, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EMC|D Chain D, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EME|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EMK|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EML|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
Length = 237
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 70 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 129
Query: 68 REDCN 72
+ED N
Sbjct: 130 KEDGN 134
>pdb|2WUR|A Chain A, Atomic Resolution Structure Of Gfp Measured On A Rotating
Anode
Length = 236
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|1Q4E|A Chain A, S65t Q80r Y145c Green Fluorescent Protein (Gfp) Ph 8.5
Length = 236
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|1Q73|A Chain A, S65t Q80r Y145c T203c Green Fluorescent Protein (Gfp) Ph
8.5
Length = 236
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 26/82 (31%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN--ADELIDVINANRVYL 87
+ED N +L N++ VY+
Sbjct: 129 KEDGNILGHKLEYNCNSHNVYI 150
>pdb|1JBY|A Chain A, Crystal Structure Analysis Of A Dual-Wavelength Emission
Green Fluorescent Protein Variant At Low Ph
pdb|1JBZ|A Chain A, Crystal Structure Analysis Of A Dual-Wavelength Emission
Green Fluorescent Protein Variant At High Ph
Length = 236
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|2AH8|B Chain B, Rogfp1-R7. Cystal Structure Analysis Of A Rate-Enhanced
Variant Of Redox-Sensitive Green Fluorescent Protein In
The Oxidized Form
Length = 236
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|3CD1|A Chain A, Development Of A Family Of Redox-Sensitive Green
Fluorescent Protein Indicators For Use In Relatively
Oxidizing Subcellular Environments
pdb|3CD9|A Chain A, Development Of A Family Of Redox-Sensitive Green
Fluorescent Protein Indicators For Use In Relatively
Oxidizing Subcellular Environments
Length = 248
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 80 FSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 139
Query: 68 REDCN 72
+ED N
Sbjct: 140 KEDGN 144
>pdb|2AHA|A Chain A, Crystal Structure Analysis Of A Rate-Enhanced Variant Of
Redox-Sensitive Green Fluorescent Protein In The Reduced
Form, Rogfp1-R8.
pdb|2AHA|B Chain B, Crystal Structure Analysis Of A Rate-Enhanced Variant Of
Redox-Sensitive Green Fluorescent Protein In The Reduced
Form, Rogfp1-R8
Length = 236
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|2AH8|A Chain A, Rogfp1-R7. Cystal Structure Analysis Of A Rate-Enhanced
Variant Of Redox-Sensitive Green Fluorescent Protein In
The Oxidized Form
Length = 236
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|3CB9|A Chain A, Development Of A Family Of Redox-Sensitive Green
Fluorescent Protein Indicators For Use In Relatively
Oxidizing Subcellular Environments
pdb|3CBE|A Chain A, Development Of A Family Of Redox-Sensitive Green
Fluorescent Protein Indicators For Use In Relatively
Oxidizing Subcellular Environments
Length = 248
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 80 FSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 139
Query: 68 REDCN 72
+ED N
Sbjct: 140 KEDGN 144
>pdb|1Q4C|A Chain A, S65t Q80r T203c Green Fluorescent Protein (Gfp) Ph 8.5
pdb|1Q4D|A Chain A, S65t Q80r T203c Green Fluorescent Protein (Gfp) Ph 5.5
Length = 236
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|1JC0|A Chain A, Crystal Structure Analysis Of A Redox-Sensitive Green
Fluorescent Protein Variant In A Reduced Form
pdb|1JC0|B Chain B, Crystal Structure Analysis Of A Redox-Sensitive Green
Fluorescent Protein Variant In A Reduced Form
pdb|1JC0|C Chain C, Crystal Structure Analysis Of A Redox-Sensitive Green
Fluorescent Protein Variant In A Reduced Form
pdb|1JC1|A Chain A, Crystal Structure Analysis Of A Redox-Sensitive Green
Fluorescent Protein Variant In A Oxidized Form
pdb|1JC1|B Chain B, Crystal Structure Analysis Of A Redox-Sensitive Green
Fluorescent Protein Variant In A Oxidized Form
pdb|1JC1|C Chain C, Crystal Structure Analysis Of A Redox-Sensitive Green
Fluorescent Protein Variant In A Oxidized Form
Length = 236
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 37/97 (38%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + +H ++KSA RA +E DTL +++ LK + F
Sbjct: 226 FSRYPDHMKQHDFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 285
Query: 68 REDCNADELIDVINANRVYLPCIYAYNKIDQISIEEV 104
+ED N L YN DQ++ E++
Sbjct: 286 KEDGN-------------ILGHKLEYNLPDQLTEEQI 309
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 37/97 (38%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + +H ++KSA RA +E DTL +++ LK + F
Sbjct: 226 FSRYPDHMKQHDFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 285
Query: 68 REDCNADELIDVINANRVYLPCIYAYNKIDQISIEEV 104
+ED N L YN DQ++ E++
Sbjct: 286 KEDGN-------------ILGHKLEYNLPDQLTEEQI 309
>pdb|2YFP|A Chain A, Structure Of Yellow-Emission Variant Of Gfp
Length = 236
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FARYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|1HUY|A Chain A, Crystal Structure Of Citrine, An Improved Yellow Variant
Of Green Fluorescent Protein
Length = 239
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 72 FARYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 131
Query: 68 REDCN 72
+ED N
Sbjct: 132 KEDGN 136
>pdb|1F09|A Chain A, Crystal Structure Of The Green Fluorescent Protein (Gfp)
Variant Yfp-H148q With Two Bound Iodides
pdb|1F0B|A Chain A, Crystal Structure Of The Green Fluorescent Protein (Gfp)
Variant Yfp-H148q
Length = 236
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FARYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|1YFP|A Chain A, Structure Of Yellow-Emission Variant Of Gfp
pdb|1YFP|B Chain B, Structure Of Yellow-Emission Variant Of Gfp
Length = 225
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 67 FARYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 126
Query: 68 REDCN 72
+ED N
Sbjct: 127 KEDGN 131
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FARYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|1H6R|A Chain A, The Oxidized State Of A Redox Sensitive Variant Of Green
Fluorescent Protein
pdb|1H6R|B Chain B, The Oxidized State Of A Redox Sensitive Variant Of Green
Fluorescent Protein
pdb|1H6R|C Chain C, The Oxidized State Of A Redox Sensitive Variant Of Green
Fluorescent Protein
Length = 236
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FARYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN 72
+ED N
Sbjct: 129 KEDGN 133
>pdb|4GES|B Chain B, Crystal Structure Of Gfp-Tyr151pyz With An Unnatural Amino
Acid Incorporation
Length = 246
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 24/75 (32%)
Query: 22 VLAYCWSKGTFQSYTSSINRHYYYKSA---------------------RA---YEADTLP 57
V + + F Y + +H ++KSA RA +E DTL
Sbjct: 61 VTTFSYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLV 120
Query: 58 SKLTLKNVLFREDCN 72
+++ LK + F+ED N
Sbjct: 121 NRIELKGIDFKEDGN 135
>pdb|1KYP|A Chain A, Crystal Structure Of An Apo Green Fluorescent Protein Zn
Biosensor
pdb|1KYR|A Chain A, Crystal Structure Of A Cu-Bound Green Fluorescent Protein
Zn Biosensor
pdb|1KYS|A Chain A, Crystal Structure Of A Zn-Bound Green Fluorescent Protein
Biosensor
Length = 237
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN--ADELIDVINANRVYLPCIYAYNKI 96
Y ++ +E DTL +++ LK + F+ED N +L N+ VY+ N I
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSGNVYITADKQKNGI 160
>pdb|2AWK|A Chain A, Gfp R96m Mature Chromophore
Length = 228
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 29 KGTFQSYTSSI--NRHYYYKSARAYEADTLPSKLTLKNVLFREDCN 72
+G Q T S + +Y ++ +E DTL +++ LK + F+ED N
Sbjct: 89 EGYVQEMTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|3U8P|A Chain A, Cytochrome B562 Integral Fusion With Egfp
pdb|3U8P|B Chain B, Cytochrome B562 Integral Fusion With Egfp
pdb|3U8P|C Chain C, Cytochrome B562 Integral Fusion With Egfp
Length = 347
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y + +H ++KSA RA +E DTL +++ LK + F
Sbjct: 180 FSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 239
Query: 68 REDCN 72
+ED N
Sbjct: 240 KEDGN 244
>pdb|2AWJ|A Chain A, Gfp R96m Pre-Cyclized Intermediate In Chromophore
Formation
Length = 230
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 29 KGTFQSYTSSI--NRHYYYKSARAYEADTLPSKLTLKNVLFREDCN 72
+G Q T S + +Y ++ +E DTL +++ LK + F+ED N
Sbjct: 91 EGYVQEMTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGN 136
>pdb|3K1K|A Chain A, Green Fluorescent Protein Bound To Minimizer Nanobody
pdb|3K1K|B Chain B, Green Fluorescent Protein Bound To Minimizer Nanobody
Length = 236
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 26/82 (31%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHXKRHDFFKSAXPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN--ADELIDVINANRVYL 87
+ED N +L N++ VY+
Sbjct: 129 KEDGNILGHKLEYNYNSHNVYI 150
>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent
Protein- Ubiquitin Fusion Protein
Length = 307
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 107 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 136
>pdb|1EMA|A Chain A, Green Fluorescent Protein From Aequorea Victoria
Length = 236
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 26/82 (31%)
Query: 32 FQSYTSSINRHYYYKSA---------------------RA---YEADTLPSKLTLKNVLF 67
F Y RH ++KSA RA +E DTL +++ LK + F
Sbjct: 69 FSRYPDHXKRHDFFKSAXPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF 128
Query: 68 REDCN--ADELIDVINANRVYL 87
+ED N +L N++ VY+
Sbjct: 129 KEDGNILGHKLEYNYNSHNVYI 150
>pdb|3EVP|A Chain A, Crystal Structure Of Circular-Permutated Egfp
Length = 243
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 205 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 234
>pdb|1QYO|A Chain A, Anaerobic Precylization Intermediate Crystal Structure For
S65g Y66g Gfp Variant
Length = 238
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN--ADELIDVINANRVYLPCIYAYNKI 96
Y ++ +E DTL +++ LK + F+ED N +L N++ VY+ N I
Sbjct: 106 YKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGI 161
>pdb|1YHG|A Chain A, Uncyclized Precursor Structure Of S65g Y66s V68g Gfp
Variant
pdb|1YHG|B Chain B, Uncyclized Precursor Structure Of S65g Y66s V68g Gfp
Variant
Length = 239
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN--ADELIDVINANRVYLPCIYAYNKI 96
Y ++ +E DTL +++ LK + F+ED N +L N++ VY+ N I
Sbjct: 107 YKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGI 162
>pdb|3LA1|A Chain A, High Resolution Crystal Structure Of Cypet Mutant A167i
Length = 237
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|1QYF|A Chain A, Crystal Structure Of Matured Green Fluorescent Protein
R96a Variant
Length = 228
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 29 KGTFQSYTSSI--NRHYYYKSARAYEADTLPSKLTLKNVLFREDCN 72
+G Q T S + +Y ++ +E DTL +++ LK + F+ED N
Sbjct: 89 EGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|3VHT|A Chain A, Crystal Structure Of Gfp-Wrnip1 Ubz Domain Fusion Protein
In Complex With Ubiquitin
Length = 233
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 107 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 136
>pdb|2HRS|A Chain A, Crystal Structure Of L42h V224h Design Intermediate For
Gfp Metal Ion Reporter
Length = 236
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN--ADELIDVINANRVYL 87
Y ++ +E DTL +++ LK + F+ED N +L N++ VY+
Sbjct: 104 YKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYI 150
>pdb|4AS8|A Chain A, X-Ray Structure Of The Cyan Fluorescent Protein Cerulean
Cryoprotected With Ethylene Glycol
Length = 243
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|2WSO|A Chain A, Structure Of Cerulean Fluorescent Protein At Physiological
Ph
Length = 237
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|4AR7|A Chain A, X-Ray Structure Of The Cyan Fluorescent Protein Mturquoise
Length = 243
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|4BDU|A Chain A, Bax Bh3-in-groove Dimer (gfp)
pdb|4BDU|B Chain B, Bax Bh3-in-groove Dimer (gfp)
pdb|4BDU|C Chain C, Bax Bh3-in-groove Dimer (gfp)
pdb|4BDU|D Chain D, Bax Bh3-in-groove Dimer (gfp)
Length = 309
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 42 HYYYKSARAYEADTLPSKLTLKNVLFREDCN 72
+Y ++ +E DTL +++ LK + F+ED N
Sbjct: 106 NYKTRAEVKFEGDTLVNRIELKGIDFKEDGN 136
>pdb|1RMM|A Chain A, Probing The Role Of Tryptophans In Aequorea Victoria Green
Fluorescent Proteins With An Expanded Genetic Code
pdb|1RMP|A Chain A, Probing The Role Of Tryptophans In Aequorea Victoria Green
Fluorescent Proteins With An Expanded Genetic Code
Length = 226
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 103 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 132
>pdb|1QYQ|A Chain A, Crystal Structure Of The Cyclized S65g Y66g Gfp Variant
pdb|2FZU|A Chain A, Reduced Enolate Chromophore Intermediate For Gfp Variant
pdb|2G6E|A Chain A, Structure Of Cyclized F64l S65a Y66s Gfp Variant
pdb|2HCG|A Chain A, Structure Of S65t Y66f Gfp Variant After Cyclization,
Carbon-Carbon Bond Cleavage, And Oxygen Incorporation
Reactions
Length = 237
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|2AWM|A Chain A, Gfp R96a Chromophore Maturation Recovery Mutant R96a Q183r
Length = 228
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 29 KGTFQSYTSSI--NRHYYYKSARAYEADTLPSKLTLKNVLFREDCN 72
+G Q T S + +Y ++ +E DTL +++ LK + F+ED N
Sbjct: 89 EGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|2YDZ|A Chain A, X-Ray Structure Of The Cyan Fluorescent Protein Scfp3a
(K206a Mutant)
pdb|2YE0|A Chain A, X-Ray Structure Of The Cyan Fluorescent Protein Mturquoise
(K206a Mutant)
Length = 243
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|2AWL|A Chain A, Mature R96k Gfp Mutant
Length = 228
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|2YE1|A Chain A, X-Ray Structure Of The Cyan Fluorescent Protein
Mturquoise-Gl (K206a Mutant)
Length = 243
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|3OGO|A Chain A, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|B Chain B, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|C Chain C, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|D Chain D, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
Length = 247
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 115 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 144
>pdb|2QRF|A Chain A, Green Fluorescent Protein: Cyclized-Only Intermediate Of
Chromophore Maturation In The Q183e Variant
Length = 228
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 104 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 133
>pdb|2FWQ|A Chain A, Reduced Enolate Chromophore Intermediate For Y66h Gfp
Variant
Length = 237
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|1YJF|A Chain A, Cyclized Post-Translational Product For S65a Y66s (Gfphal)
Green Fluorescent Protein Variant
pdb|2HGD|A Chain A, Structure Of S65a Y66f Gfp Variant With An Oxidized
Chromophore
Length = 237
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|1YHI|A Chain A, Uncyclized Precursor Structure Of S65a Y66s R96a Gfp
Variant
Length = 239
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 107 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 136
>pdb|1YJ2|A Chain A, Cyclized, Non-Dehydrated Post-Translational Product For
S65a Y66s H148g Gfp Variant
Length = 237
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|1RMO|A Chain A, Probing The Role Of Tryptophans In Aequorea Victoria Green
Fluorescent Proteins With An Expanded Genetic Code
Length = 236
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 104 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 133
>pdb|1OXF|A Chain A, Expansion Of The Genetic Code Enables Design Of A Novel
"gold" Class Of Green Fluorescent Proteins
Length = 225
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 103 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 132
>pdb|1QXT|A Chain A, Crystal Structure Of Precyclized Intermediate For The
Green Fluorescent Protein R96a Variant (A)
Length = 230
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 29 KGTFQSYTSSI--NRHYYYKSARAYEADTLPSKLTLKNVLFREDCN 72
+G Q T S + +Y ++ +E DTL +++ LK + F+ED N
Sbjct: 91 EGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGN 136
>pdb|2QZ0|A Chain A, Mature Q183e Variant Of Green Fluorescent Protein
Chromophore
Length = 228
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|3V3D|A Chain A, Crystal Structure Of An Eyfp Single Mutant
Length = 257
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 125 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 154
>pdb|1YHH|A Chain A, Uncyclized Precursor Structure Of S65a Y66s G67a Gfp
Variant
Length = 239
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 107 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 136
>pdb|4EUL|A Chain A, Crystal Structure Of Enhanced Green Fluorescent Protein To
1.35a Resolution Reveals Alternative Conformations For
Glu222
Length = 237
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|2Y0G|A Chain A, X-Ray Structure Of Enhanced Green Fluorescent Protein
(Egfp)
Length = 250
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 118 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 147
>pdb|3ST2|A Chain A, Dreiklang - Equilibrium State
pdb|3ST2|B Chain B, Dreiklang - Equilibrium State
pdb|3ST2|C Chain C, Dreiklang - Equilibrium State
pdb|3ST3|A Chain A, Dreiklang - Off State
pdb|3ST3|B Chain B, Dreiklang - Off State
pdb|3ST3|C Chain C, Dreiklang - Off State
pdb|3ST4|A Chain A, Dreiklang - On State
pdb|3ST4|B Chain B, Dreiklang - On State
pdb|3ST4|C Chain C, Dreiklang - On State
Length = 250
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 118 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 147
>pdb|2HQZ|A Chain A, Crystal Structure Of L42h Design Intermediate For Gfp
Metal Ion Reporter
Length = 236
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 104 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 133
>pdb|2HFC|A Chain A, Structure Of S65t Y66f R96a Gfp Variant In Precursor State
Length = 239
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 107 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 136
>pdb|1CV7|A Chain A, Crystal Structure Of Enhanced Cyan-Emission Variant Of Gfp
Length = 226
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 104 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 133
>pdb|1QY3|A Chain A, Crystal Structure Of Precyclized Intermediate For The
Green Fluorescent Protein R96a Variant (B)
Length = 229
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 29 KGTFQSYTSSI--NRHYYYKSARAYEADTLPSKLTLKNVLFREDCN 72
+G Q T S + +Y ++ +E DTL +++ LK + F+ED N
Sbjct: 90 EGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGN 135
>pdb|3ZTF|A Chain A, X-Ray Structure Of The Cyan Fluorescent Protein
Mturquoise2 (K206a Mutant)
Length = 243
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|3GEX|A Chain A, 1.6 Angstrom Crystal Structure Of Fluorescent Protein
Cypet
pdb|3I19|A Chain A, 1.4 Angstrom Crystal Structure Of Fluorescent Protein
Cypet
Length = 242
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 110 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 139
>pdb|2QT2|A Chain A, Cyclized-Dehydrated Intermediate Of Gfp Variant Q183e In
Chromophore Maturation
Length = 236
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 104 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 133
>pdb|2HJO|A Chain A, Crystal Structure Of V224h Design Intermediate For Gfp
Metal Ion Reporter
Length = 236
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 104 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 133
>pdb|3SSP|A Chain A, Engineered Low-Affinity Halide-Binding Protein Derived
From Yfp: Halide-Free
pdb|3SST|A Chain A, Engineered Low-Affinity Halide-Binding Protein Derived
From Yfp: Chloride Complex
pdb|3SSV|A Chain A, Engineered Low-Affinity Halide-Binding Protein Derived
From Yfp: Fluoride Complex
pdb|3SSY|A Chain A, Engineered Low-Affinity Halide-Binding Protein Derived
From Yfp: Iodide Complex
pdb|3SVE|A Chain A, Engineered Low-Affinity Halide-Binding Protein Derived
From Yfp: Bromide Complex
Length = 258
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|3SRY|A Chain A, Engineered High-Affinity Halide-Binding Protein Derived
From Yfp: Halide-Free
pdb|3SS0|A Chain A, Engineered High-Affinity Halide-Binding Protein Derived
From Yfp: Fluoride Complex
pdb|3SSH|A Chain A, Engineered High-Affinity Halide-Binding Protein Derived
From Yfp: Chloride Complex
pdb|3SSK|A Chain A, Engineered High-Affinity Halide-Binding Protein Derived
From Yfp: Bromide Complex
pdb|3SSL|A Chain A, Engineered High-Affinity Halide-Binding Protein Derived
From Yfp: Iodide Complex
Length = 258
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|2WSN|A Chain A, Structure Of Enhanced Cyan Fluorescent Protein At
Physiological Ph
Length = 237
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|1B9C|A Chain A, Green Fluorescent Protein Mutant F99s, M153t And V163a
pdb|1B9C|B Chain B, Green Fluorescent Protein Mutant F99s, M153t And V163a
pdb|1B9C|C Chain C, Green Fluorescent Protein Mutant F99s, M153t And V163a
pdb|1B9C|D Chain D, Green Fluorescent Protein Mutant F99s, M153t And V163a
Length = 236
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 104 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 133
>pdb|2HGY|A Chain A, Structure Of S65a Y66f E222a Gfp Variant After Cyclization
And Carbon-Carbon Bond Cleavage
Length = 237
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|3ST0|A Chain A, Engineered Medium-Affinity Halide-Binding Protein Derived
From Yfp: Halide-Free
pdb|3SV5|A Chain A, Engineered Medium-Affinity Halide-Binding Protein Derived
From Yfp: Iodide Complex
pdb|3SVB|A Chain A, Engineered Medium-Affinity Halide-Binding Protein Derived
From Yfp: Fluoride Complex
pdb|3SVC|A Chain A, Engineered Medium-Affinity Halide-Binding Protein Derived
From Yfp: Chloride Complex
pdb|3SVD|A Chain A, Engineered Medium-Affinity Halide-Binding Protein Derived
From Yfp: Bromide Complex
Length = 258
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|2QU1|A Chain A, Crystal Structure Of A Cyclized Gfp Variant
Length = 239
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 107 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 136
>pdb|2H9W|A Chain A, Green Fluorescent Protein Ground States: The Influence Of
A Second Protonation Site Near The Chromophore
Length = 238
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 107 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 136
>pdb|2H6V|A Chain A, Spectroscopic And Structural Study Of The Heterotropic
Linkage Between Halide And Proton Ion Binding To Gfp
Proteins- E2(Gfp) Apo Form
pdb|2O24|A Chain A, Spectroscopic And Structural Study Of The Heterotropic
Linkage Between Halide And Proton Ion Binding To Gfp
Proteins: E2(Gfp)-Cl Complex
pdb|2O29|A Chain A, Spectroscopic And Structural Study Of The Heterotropic
Linkage Between Halide And Proton Ion Binding To Gfp
Proteins: E2(Gfp)-Br Complex
pdb|2O2B|A Chain A, Spectroscopic And Structural Study Of The Heterotropic
Linkage Between Halide And Proton Ion Binding To Gfp
Proteins: E2(Gfp)-I Complex
Length = 242
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 110 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 139
>pdb|3AI4|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent
Protein - Mouse Polymerase Iota Ubiquitin Binding Motif
Fusion Protein
Length = 283
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 107 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 136
>pdb|2OKW|A Chain A, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|B Chain B, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|C Chain C, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|D Chain D, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|E Chain E, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|F Chain F, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKY|A Chain A, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKY|B Chain B, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
Length = 236
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 104 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 133
>pdb|1MYW|A Chain A, Crystal Structure Of A Yellow Fluorescent Protein With
Improved Maturation And Reduced Environmental
Sensitivity
Length = 237
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 105 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 134
>pdb|3OSQ|A Chain A, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 175
Length = 661
Score = 27.3 bits (59), Expect = 4.6, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 42 HYYYKSARAYEADTLPSKLTLKNVLFREDCN 72
+Y ++ +E DTL +++ LK + F+ED N
Sbjct: 413 NYKTRAEVKFEGDTLVNRIELKGIDFKEDGN 443
>pdb|2G3D|B Chain B, Structure Of S65g Y66a Gfp Variant After Spontaneous
Peptide Hydrolysis
Length = 173
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 41 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 70
>pdb|3VHT|B Chain B, Crystal Structure Of Gfp-Wrnip1 Ubz Domain Fusion Protein
In Complex With Ubiquitin
Length = 271
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN--ADELIDVINANRVYL 87
Y ++ +E DTL +++ LK + F+ED N +L N++ VY+
Sbjct: 107 YKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYI 153
>pdb|3ED8|A Chain A, Application Of The Superfolder Yfp Bimolecular
Fluorescence Complementation For Studying
Protein-protein Interactions In Vitro
pdb|3ED8|B Chain B, Application Of The Superfolder Yfp Bimolecular
Fluorescence Complementation For Studying
Protein-protein Interactions In Vitro
pdb|3ED8|C Chain C, Application Of The Superfolder Yfp Bimolecular
Fluorescence Complementation For Studying
Protein-protein Interactions In Vitro
pdb|3ED8|D Chain D, Application Of The Superfolder Yfp Bimolecular
Fluorescence Complementation For Studying
Protein-protein Interactions In Vitro
pdb|3ED8|E Chain E, Application Of The Superfolder Yfp Bimolecular
Fluorescence Complementation For Studying
Protein-protein Interactions In Vitro
Length = 260
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN--ADELIDVINANRVYL 87
Y ++ +E DTL +++ LK F+ED N +L N++ VY+
Sbjct: 104 YKTRAVVKFEGDTLVNRIELKGTDFKEDGNILGHKLEYNFNSHNVYI 150
>pdb|3OSR|A Chain A, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 311
pdb|3OSR|B Chain B, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 311
Length = 653
Score = 27.3 bits (59), Expect = 4.7, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 42 HYYYKSARAYEADTLPSKLTLKNVLFREDCN 72
+Y ++ +E DTL +++ LK + F+ED N
Sbjct: 551 NYKTRAEVKFEGDTLVNRIELKGIDFKEDGN 581
>pdb|3DPW|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1 Atmosphere Number 1: Structure 1 In A Series Of 26
High Pressure Structures
pdb|3DPX|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 5000 Atmospheres: Structure 26 In A Series Of 26 High
Pressure Structures
pdb|3DPZ|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 4000 Atmospheres Number 3: Structure 25 In A Series
Of 26 High Pressure Structures
pdb|3DQ1|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 4000 Atmospheres Number 2: Structure 24 In A Series
Of 26 High Pressure Structures
pdb|3DQ2|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 4000 Atmospheres Number 1: Structure 23 In A Series
Of 26 High Pressure Structures
pdb|3DQ3|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 2500 Atmospheres: Structure 22 In A Series Of 26 High
Pressure Structures
pdb|3DQ4|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 2000 Atmospheres Number 2: Structure 20 In A Series
Of 26 High Pressure Structures
pdb|3DQ5|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1960 Atmospheres: Structure 19 In A Series Of 26 High
Pressure Structures
pdb|3DQ6|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1920 Atmospheres Number 2: Structure 18 In A Series
Of 26 High Pressure Structures
pdb|3DQ7|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1920 Atmospheres Number 1: Structure 17 In A Series
Of 26 High Pressure Structures
pdb|3DQ8|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1500 Atmospheres Number 2: Structure 16 In A Series
Of 26 High Pressure Structures
pdb|3DQ9|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1500 Atmospheres Number 1: Structure 15 In A Series
Of 26 High Pressure Structures
pdb|3DQA|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1250 Atmospheres Number 4: Structure 14 In A Series
Of 26 High Pressure Structures
pdb|3DQC|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1250 Atmospheres Number 3: Structure 13 In A Series
Of 26 High Pressure Structures
pdb|3DQD|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1250 Atmospheres Number 2: Structure 12 In A Series
Of 26 High Pressure Structures
pdb|3DQE|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1250 Atmospheres Number 1: Structure 11 In A Series
Of 26 High Pressure Structures
pdb|3DQF|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 6: Structure 10 In A Series
Of 26 High Pressure Structures
pdb|3DQH|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 5: Structure 9 In A Series Of
26 High Pressure Structures
pdb|3DQI|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 4: Structure 8 In A Series Of
26 High Pressure Structures
pdb|3DQJ|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 3: Structure 7 In A Series Of
26 High Pressure Structures
pdb|3DQK|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 2: Structure 6 In A Series Of
26 High Pressure Structures
pdb|3DQL|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 1: Structure 5 In A Series Of
26 High Pressure Structures
pdb|3DQM|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 750 Atmospheres: Structure 4 In A Series Of 26 High
Pressure Structures
pdb|3DQN|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 500 Atmospheres: Structure 3 In A Series Of 26 High
Pressure Structures
pdb|3DQO|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1 Atmosphere Number 2: Structure 2 In A Series Of 26
High Pressure Structures
pdb|3DQU|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 2000 Atmospheres Number 1: Structure 20 In A Series
Of 26 High Pressure Structures
Length = 241
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 109 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 138
>pdb|2G2S|B Chain B, Structure Of S65g Y66s Gfp Variant After Spontaneous
Peptide Hydrolysis
pdb|2G5Z|B Chain B, Structure Of S65g Y66s Gfp Variant After Spontaneous
Peptide Hydrolysis And Decarboxylation
Length = 173
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 41 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 70
>pdb|3AKO|A Chain A, Crystal Structure Of The Reassembled Venus
pdb|3AKO|C Chain C, Crystal Structure Of The Reassembled Venus
pdb|3AKO|E Chain E, Crystal Structure Of The Reassembled Venus
pdb|3AKO|G Chain G, Crystal Structure Of The Reassembled Venus
Length = 173
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 125 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 154
>pdb|2G16|B Chain B, Structure Of S65a Y66s Gfp Variant After Backbone
Fragmentation
Length = 172
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 40 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 69
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 43 YYYKSARAYEADTLPSKLTLKNVLFREDCN 72
Y ++ +E DTL +++ LK + F+ED N
Sbjct: 920 YKTRAEVKFEGDTLVNRIELKGIDFKEDGN 949
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,706,251
Number of Sequences: 62578
Number of extensions: 161775
Number of successful extensions: 427
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 125
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)