BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7063
(188 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55039|DRG2_HUMAN Developmentally-regulated GTP-binding protein 2 OS=Homo sapiens
GN=DRG2 PE=1 SV=1
Length = 364
Score = 192 bits (489), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 106/149 (71%), Gaps = 24/149 (16%)
Query: 64 NVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLN 123
VLFREDC+ DE IDVI NRVY+PC+Y YNKIDQIS+EEVDR+AR+PNSVV+SC MKLN
Sbjct: 216 EVLFREDCSPDEFIDVIVGNRVYMPCLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLN 275
Query: 124 LDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG----------------------- 160
LDYLL+++W YL+L +YTKK G PDF D +ILRKG
Sbjct: 276 LDYLLEMLWEYLALTCIYTKKRGQRPDFTDAIILRKGASVEHVCHRIHRSLASQFKYALV 335
Query: 161 -GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
GTSTKYSPQRVGL H M EDVIQIVKK
Sbjct: 336 WGTSTKYSPQRVGLTHTMEHEDVIQIVKK 364
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/25 (88%), Positives = 22/25 (88%)
Query: 1 MGILEKISEIEKEIARTQKNKVLAY 25
MGILEKISEIEKEIARTQKNK Y
Sbjct: 1 MGILEKISEIEKEIARTQKNKATEY 25
>sp|Q9QXB9|DRG2_MOUSE Developmentally-regulated GTP-binding protein 2 OS=Mus musculus
GN=Drg2 PE=1 SV=1
Length = 364
Score = 190 bits (483), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 106/148 (71%), Gaps = 24/148 (16%)
Query: 65 VLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLNL 124
VLFREDC+ D+ IDVI NRVY+PC+Y YNKIDQIS+EEVDR+AR+PNSVV+SC MKLNL
Sbjct: 217 VLFREDCSPDDFIDVIVGNRVYMPCLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNL 276
Query: 125 DYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG------------------------ 160
DYLL+++W YL+L +YTKK G PDF D +ILRKG
Sbjct: 277 DYLLEMLWEYLALTCIYTKKRGQRPDFTDAIILRKGASVEHVCHRIHRSLASQFKYALVW 336
Query: 161 GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
GTSTKYSPQRVGL H M EDVIQIVKK
Sbjct: 337 GTSTKYSPQRVGLTHTMEHEDVIQIVKK 364
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/25 (88%), Positives = 22/25 (88%)
Query: 1 MGILEKISEIEKEIARTQKNKVLAY 25
MGILEKISEIEKEIARTQKNK Y
Sbjct: 1 MGILEKISEIEKEIARTQKNKATEY 25
>sp|Q58D56|DRG2_BOVIN Developmentally-regulated GTP-binding protein 2 OS=Bos taurus
GN=DRG2 PE=2 SV=1
Length = 364
Score = 189 bits (481), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 106/149 (71%), Gaps = 24/149 (16%)
Query: 64 NVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLN 123
VLFREDC+ DE IDVI NRVY+PC+Y YNKIDQIS+EEVDR+AR+P+SVV+SC MKLN
Sbjct: 216 EVLFREDCSPDEFIDVIVGNRVYMPCLYVYNKIDQISMEEVDRLARKPDSVVISCGMKLN 275
Query: 124 LDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG----------------------- 160
LDYLL+++W YL+L +YTKK G PDF D +ILRKG
Sbjct: 276 LDYLLEMLWEYLALTCIYTKKRGQRPDFTDAIILRKGASVEHVCHRIHRSLASQFKYALV 335
Query: 161 -GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
GTSTKYSPQRVGL H M EDVIQIVKK
Sbjct: 336 WGTSTKYSPQRVGLTHTMEHEDVIQIVKK 364
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/25 (88%), Positives = 22/25 (88%)
Query: 1 MGILEKISEIEKEIARTQKNKVLAY 25
MGILEKISEIEKEIARTQKNK Y
Sbjct: 1 MGILEKISEIEKEIARTQKNKATEY 25
>sp|P34280|YKK3_CAEEL Uncharacterized GTP-binding protein C02F5.3 OS=Caenorhabditis
elegans GN=C02F5.3 PE=3 SV=2
Length = 366
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 104/151 (68%), Gaps = 26/151 (17%)
Query: 64 NVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLN 123
+V+FREDC DE IDVI NRVY+ C+Y YNK+DQISIEE+DR+AR P+ VV+SC M LN
Sbjct: 216 DVIFREDCTVDEFIDVIQGNRVYMTCLYVYNKVDQISIEEIDRLARMPHHVVISCEMNLN 275
Query: 124 LDYLLDIIWLYLSLIRVYTKKPGAPPDF--DDGLILRKG--------------------- 160
+DYLL+ +W YL+L+RVYTKKPG PD +DG+ILR G
Sbjct: 276 MDYLLEKMWEYLALVRVYTKKPGNAPDLGPEDGIILRGGATIEHCCHALHRSIAAQLRYA 335
Query: 161 ---GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
GTSTK+SPQRVGL H + EDVIQIVKK
Sbjct: 336 IVWGTSTKFSPQRVGLHHKLDHEDVIQIVKK 366
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 21/25 (84%)
Query: 1 MGILEKISEIEKEIARTQKNKVLAY 25
MGILEKI+EIE EI+RTQKNK Y
Sbjct: 1 MGILEKIAEIEHEISRTQKNKATEY 25
>sp|Q54WT4|DRG2_DICDI Developmentally-regulated GTP-binding protein 2 homolog
OS=Dictyostelium discoideum GN=drg2 PE=3 SV=1
Length = 364
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 100/149 (67%), Gaps = 24/149 (16%)
Query: 64 NVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLN 123
+++ R D DELID I R Y+ C+Y YNK+D +S+E+VDR++RQPNSVV+SCNM LN
Sbjct: 216 DLVIRCDPTVDELIDAIEGRRSYIRCLYVYNKMDHMSMEDVDRLSRQPNSVVISCNMNLN 275
Query: 124 LDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG----------------------- 160
LD+LLD IW YL+L+RVYTK GA PDF+D +ILR+G
Sbjct: 276 LDFLLDKIWDYLNLVRVYTKLRGASPDFNDAIILREGATMEDICRFLHKELVSQFKYGIV 335
Query: 161 -GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
G S K+ PQRVG++H + DEDVIQIVKK
Sbjct: 336 WGVSAKHCPQRVGISHALEDEDVIQIVKK 364
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 1 MGILEKISEIEKEIARTQKNKVLAY 25
MGILEKI +IE E++RTQKNK Y
Sbjct: 1 MGILEKIKDIEAEMSRTQKNKATEY 25
>sp|Q9LQK0|DRG1_ARATH Developmentally regulated G-protein 1 OS=Arabidopsis thaliana
GN=DRG1 PE=1 SV=1
Length = 399
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 95/151 (62%), Gaps = 27/151 (17%)
Query: 65 VLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLNL 124
VLFRE+ D+ IDVI NR Y+ C+Y YNKID + I++VDR++RQPNS+V+SCN+KLNL
Sbjct: 217 VLFRENATVDDFIDVIEGNRKYIKCVYVYNKIDVVGIDDVDRLSRQPNSIVISCNLKLNL 276
Query: 125 DYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLIL---RKG--------------------- 160
D LL +W + L+RVY+K G PDFD+ +L R G
Sbjct: 277 DRLLARMWDEMGLVRVYSKPQGQQPDFDEPFVLSSDRGGCTVEDFCNHVHRTLVKDMKYA 336
Query: 161 ---GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
GTST+++PQ GL+ + DEDV+QIVKK
Sbjct: 337 LVWGTSTRHNPQNCGLSQHLEDEDVVQIVKK 367
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 1 MGILEKISEIEKEIARTQKNKVLAY 25
MGI+E+I EIE E+ARTQKNK Y
Sbjct: 1 MGIIERIKEIEAEMARTQKNKATEY 25
>sp|Q9CAI1|DRG2_ARATH Developmentally regulated G-protein 2 OS=Arabidopsis thaliana
GN=DRG2 PE=2 SV=1
Length = 399
Score = 143 bits (360), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 92/151 (60%), Gaps = 27/151 (17%)
Query: 65 VLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLNL 124
VLFRED D+ IDV+ NR Y+ C+Y YNKID + I++VDR+ARQPNS+V+SCN+KLNL
Sbjct: 217 VLFREDATVDDFIDVVEGNRKYIKCVYVYNKIDVVGIDDVDRLARQPNSIVISCNLKLNL 276
Query: 125 DYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLIL---RKG--------------------- 160
D LL +W + L+RVY+K PDFD+ +L R G
Sbjct: 277 DRLLARMWDEMGLVRVYSKPQSQQPDFDEPFVLSADRGGCTVEDFCNQVHRTLVKDMKYA 336
Query: 161 ---GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
GTS ++ PQ GL H + DEDV+QIVKK
Sbjct: 337 LVWGTSARHYPQHCGLFHHLEDEDVVQIVKK 367
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 1 MGILEKISEIEKEIARTQKNKVLAY 25
MGI+E+I EIE E+ARTQKNK Y
Sbjct: 1 MGIVERIKEIEAEMARTQKNKATEY 25
>sp|P32235|GTP1_SCHPO GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=gtp1 PE=3 SV=2
Length = 364
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 94/150 (62%), Gaps = 25/150 (16%)
Query: 64 NVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLN 123
++L RED D+ ID++ NR Y+ C+Y Y+KID +S+EEVDR+AR P SVV+SCNMKLN
Sbjct: 215 DILIREDITVDDFIDLVMGNRRYINCLYCYSKIDAVSLEEVDRLARLPKSVVISCNMKLN 274
Query: 124 LDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG----------------------- 160
LD+L + IW L+L R+YTK+ G PDF + LI+RKG
Sbjct: 275 LDFLKERIWEELNLYRIYTKRKGEMPDFSEALIVRKGSTIEQVCNRIHRTLAEQLKYALV 334
Query: 161 -GTSTKYSPQ-RVGLAHVMADEDVIQIVKK 188
GTS K+SPQ VGL H + + DV+ IV K
Sbjct: 335 WGTSAKHSPQVVVGLNHRVEEGDVVTIVTK 364
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 1 MGILEKISEIEKEIARTQKNKVLAY 25
MG+LEKI EIE E+ RTQKNK Y
Sbjct: 1 MGVLEKIQEIEAEMRRTQKNKATEY 25
>sp|Q54HP3|DRG1_DICDI Developmentally-regulated GTP-binding protein 1 homolog
OS=Dictyostelium discoideum GN=drg1 PE=3 SV=1
Length = 370
Score = 137 bits (344), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 94/151 (62%), Gaps = 26/151 (17%)
Query: 64 NVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLN 123
+V+ R +C DE IDVI NR+Y+PCIY NKID ISIEE+D + + P+ V +S +++ N
Sbjct: 220 DVILRGNCTVDEFIDVIEGNRIYVPCIYVLNKIDAISIEELDLLDKIPHYVPISSHLEWN 279
Query: 124 LDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG----------------------- 160
LD LLD IW YL LIRVYTK G PD+++ +++R G
Sbjct: 280 LDALLDKIWEYLKLIRVYTKPKGLIPDYNEPVVIRGGEEASIETFCNHIHNSIIRQFRYA 339
Query: 161 ---GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
G+S K++PQR G HV+ADED++QIVKK
Sbjct: 340 LVWGSSAKHNPQRCGKDHVLADEDIVQIVKK 370
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 1 MGILEKISEIEKEIARTQKNKVLAY 25
M +++KI E+E E+ARTQKNK ++
Sbjct: 1 MSLVQKIKEVEDEMARTQKNKATSF 25
>sp|P43690|DRG1_XENLA Developmentally-regulated GTP-binding protein 1 OS=Xenopus laevis
GN=drg1 PE=2 SV=1
Length = 367
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 89/150 (59%), Gaps = 25/150 (16%)
Query: 64 NVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLN 123
++ R D AD+LIDV+ NRVY+PCIY NKIDQISIEE+D I + P+ V +S + + N
Sbjct: 218 DITLRSDATADDLIDVVEGNRVYIPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWN 277
Query: 124 LDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG----------------------- 160
D LL+ IW YL L+R+YTK G PD+ ++L
Sbjct: 278 FDDLLEKIWDYLQLVRIYTKPKGQLPDYTSPVVLPCSHTAAEDFCTKIHKNLIKEFKYAL 337
Query: 161 --GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
G+S K++PQ+VG HV+ DEDVIQIVKK
Sbjct: 338 VWGSSVKHNPQKVGKDHVLEDEDVIQIVKK 367
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 2 GILEKISEIEKEIARTQKNKVLAY 25
G L +I+EIE E+ARTQKNK AY
Sbjct: 3 GTLARIAEIEAEMARTQKNKATAY 26
>sp|P32234|128UP_DROME GTP-binding protein 128up OS=Drosophila melanogaster GN=128up PE=2
SV=2
Length = 368
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 89/150 (59%), Gaps = 25/150 (16%)
Query: 64 NVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLN 123
++ R D +D+LIDVI NR+Y+PCIY NKIDQISIEE+D I + P+ V +S + N
Sbjct: 218 DITLRYDATSDDLIDVIEGNRIYIPCIYLLNKIDQISIEELDVIYKIPHCVPISAHHHWN 277
Query: 124 LDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG----------------------- 160
D LL+++W YL L R+YTK G PD++ ++L
Sbjct: 278 FDDLLELMWEYLRLQRIYTKPKGQLPDYNSPVVLHNERTSIEDFCNKLHRSIAKEFKYAL 337
Query: 161 --GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
G+S K+ PQ+VG+ HV+ DEDV+QIVKK
Sbjct: 338 VWGSSVKHQPQKVGIEHVLNDEDVVQIVKK 367
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 3 ILEKISEIEKEIARTQKNK 21
ILEKIS IE E+ARTQKNK
Sbjct: 4 ILEKISAIESEMARTQKNK 22
>sp|Q9Y295|DRG1_HUMAN Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens
GN=DRG1 PE=1 SV=1
Length = 367
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 87/150 (58%), Gaps = 25/150 (16%)
Query: 64 NVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLN 123
+V R D AD+LIDV+ NRVY+PCIY NKIDQISIEE+D I + P+ V +S + + N
Sbjct: 218 DVTLRSDATADDLIDVVEGNRVYIPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWN 277
Query: 124 LDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG----------------------- 160
D LL+ IW YL L+R+YTK G PD+ ++L
Sbjct: 278 FDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYAL 337
Query: 161 --GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
G S K++PQ+VG H + DEDVIQIVKK
Sbjct: 338 VWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 367
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 4 LEKISEIEKEIARTQKNKVLAY 25
L KI+EIE E+ARTQKNK A+
Sbjct: 5 LAKIAEIEAEMARTQKNKATAH 26
>sp|Q3MHP5|DRG1_BOVIN Developmentally-regulated GTP-binding protein 1 OS=Bos taurus
GN=DRG1 PE=2 SV=1
Length = 367
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 87/150 (58%), Gaps = 25/150 (16%)
Query: 64 NVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLN 123
+V R D AD+LIDV+ NRVY+PCIY NKIDQISIEE+D I + P+ V +S + + N
Sbjct: 218 DVTLRSDATADDLIDVVEGNRVYIPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWN 277
Query: 124 LDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG----------------------- 160
D LL+ IW YL L+R+YTK G PD+ ++L
Sbjct: 278 FDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYAL 337
Query: 161 --GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
G S K++PQ+VG H + DEDVIQIVKK
Sbjct: 338 VWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 367
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 4 LEKISEIEKEIARTQKNKVLAY 25
L KI+EIE E+ARTQKNK A+
Sbjct: 5 LAKIAEIEAEMARTQKNKATAH 26
>sp|P32233|DRG1_MOUSE Developmentally-regulated GTP-binding protein 1 OS=Mus musculus
GN=Drg1 PE=1 SV=1
Length = 367
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 87/150 (58%), Gaps = 25/150 (16%)
Query: 64 NVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLN 123
+V R D AD+LIDV+ NRVY+PCIY NKIDQISIEE+D I + P+ V +S + + N
Sbjct: 218 DVTLRSDATADDLIDVVEGNRVYIPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWN 277
Query: 124 LDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG----------------------- 160
D LL+ IW YL L+R+YTK G PD+ ++L
Sbjct: 278 FDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYAL 337
Query: 161 --GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
G S K++PQ+VG H + DEDVIQIVKK
Sbjct: 338 VWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 367
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 2 GILEKISEIEKEIARTQKNKVLAY 25
G L KI+EIE E+ARTQKNK A+
Sbjct: 3 GTLAKIAEIEAEMARTQKNKATAH 26
>sp|P53295|RBG2_YEAST Ribosome-interacting GTPase 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RBG2 PE=1 SV=1
Length = 368
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 91/150 (60%), Gaps = 26/150 (17%)
Query: 65 VLFRED-CNADELIDVIN-ANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKL 122
VL R+D C D+ IDVIN +R Y+ C+Y YNKID +S+EEVD++AR+PN+VV+SC M L
Sbjct: 219 VLVRDDQCTIDDFIDVINEQHRNYVKCLYVYNKIDAVSLEEVDKLAREPNTVVMSCEMDL 278
Query: 123 NLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG---------------------- 160
L +++ IW L+L RVYTKK G P FDD L++R
Sbjct: 279 GLQDVVEEIWYQLNLSRVYTKKRGVRPVFDDPLVVRNNSTIGDLCHGIHRDFKDKFKYAL 338
Query: 161 --GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
G+S K+SPQ+ GL H + DEDV+ + K
Sbjct: 339 VWGSSAKHSPQKCGLNHRIDDEDVVSLFAK 368
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 1 MGILEKISEIEKEIARTQKNKVLAYCWS--KGTFQSYTSSI 39
MGI++KI IE+E+ARTQKNK + KG Y +
Sbjct: 1 MGIIDKIKAIEEEMARTQKNKATEHHLGLLKGKLARYRQQL 41
>sp|Q9UT21|YFY7_SCHPO Uncharacterized GTP-binding protein C9.07c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC9.07c PE=2 SV=1
Length = 366
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 86/150 (57%), Gaps = 25/150 (16%)
Query: 64 NVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLN 123
++ FR D D+LIDV+ NRVY+P +Y NKID ISIEE+D I R PN+V + N N
Sbjct: 217 DIAFRCDATIDDLIDVLEGNRVYIPALYVLNKIDSISIEELDLIDRIPNAVPICGNRGWN 276
Query: 124 LDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG----------------------- 160
+D L + +W YL+L+RVYT+ G PD+ + +ILR G
Sbjct: 277 IDELKETMWDYLNLVRVYTRPRGLEPDYSEPVILRTGHSTVEDFCNNIHSSIKSQFKHAY 336
Query: 161 --GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
G S Y RVGL+HV+ DEDV+ IVKK
Sbjct: 337 VWGKSVPYPGMRVGLSHVLLDEDVVTIVKK 366
>sp|P39729|RBG1_YEAST Ribosome-interacting GTPase 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RBG1 PE=1 SV=1
Length = 369
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 87/150 (58%), Gaps = 26/150 (17%)
Query: 65 VLFREDCNADELIDVINAN-RVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLN 123
+ FR D D+LIDV+ A+ R Y+P IY NKID +SIEE++ + R PN+V +S N
Sbjct: 220 IAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDSLSIEELELLYRIPNAVPISSGQDWN 279
Query: 124 LDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG----------------------- 160
LD LL ++W L+L+R+YTK G PDF D ++LR
Sbjct: 280 LDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQIHKSLVDDFRNAL 339
Query: 161 --GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
G+S K+ PQ VGL+H++ DEDV+ I+KK
Sbjct: 340 VYGSSVKHQPQYVGLSHILEDEDVVTILKK 369
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 4 LEKISEIEKEIARTQKNKVLAY 25
+EKI IE E+ARTQKNK ++
Sbjct: 5 VEKIKAIEDEMARTQKNKATSF 26
>sp|Q58722|Y1326_METJA Uncharacterized GTP-binding protein MJ1326 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1326 PE=3 SV=1
Length = 391
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 29/154 (18%)
Query: 64 NVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQ-----PNSVVVSC 118
+V+ RED ++ IDV+ NRVY+P + NKID E + I ++ + ++VS
Sbjct: 237 DVVIREDITLEQFIDVVAGNRVYIPSLVVVNKIDLADEEYLKYIKQKLEEFGKDYILVSG 296
Query: 119 NMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG------------------ 160
N +NLD L + I+ L I++Y K G PDFD+ LI+R+G
Sbjct: 297 NKGINLDLLKEKIYEKLGFIKIYLKPQGKKPDFDEPLIMRRGATVKDVCEKLHKDFVRNF 356
Query: 161 ------GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
G S K+ QRVGL H + D D++ IV K
Sbjct: 357 RYAQVWGKSAKHPGQRVGLDHKLEDGDILTIVIK 390
>sp|P17103|Y1111_HALSA Uncharacterized GTP-binding protein VNG_1111G OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=VNG_1111G PE=3 SV=1
Length = 370
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 32/157 (20%)
Query: 64 NVLFREDCNADELIDVINANRVYLPCIYAYNKIDQI------SIEEV--DRIARQPNSVV 115
NV R + + D LID + NRVY+P + NK+D I ++++ D +++
Sbjct: 213 NVTIRGNPSVDRLIDGVMDNRVYMPSLVTVNKVDLIEPSYAGTMKDALRDHGVSPDDAIF 272
Query: 116 VSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG--------------- 160
+S + LD L + +W L LIR+Y KPG D ++ LI+R+G
Sbjct: 273 ISAAEEKGLDVLKERMWRALGLIRIYMDKPGRGVDREEPLIIRRGETVDDAVQKLGGTLD 332
Query: 161 ---------GTSTKYSPQRVGLAHVMADEDVIQIVKK 188
G S ++ Q+VG HV+ DEDV+++V +
Sbjct: 333 ERFRFARVTGPSAQHDDQQVGRDHVLEDEDVLRVVAR 369
>sp|Q58526|HFLX_METJA GTPase HflX OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=hflX PE=3
SV=1
Length = 402
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 88 PCIYAYNKIDQIS-------IEEVDRIARQPNSVVVSCNMKLNLDYLLDIIWLYLSL 137
P I +NK+D+I+ +EE+DR P + VS +N+D L ++I +L+L
Sbjct: 294 PIITVFNKVDKITKEKKRKILEELDRYIVNP--IFVSAKYDINMDLLKEMIIEHLNL 348
>sp|P39370|NANS_ECOLI Probable 9-O-acetyl-N-acetylneuraminic acid deacetylase
OS=Escherichia coli (strain K12) GN=nanS PE=2 SV=1
Length = 326
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 7 ISEIEKEIARTQKNKVLAYCWSKGTFQSYTSSINRH 42
+S +A+ +NK L CW +G F TS H
Sbjct: 157 VSRTRAALAKNPQNKFLGACWMQGEFDLMTSDYASH 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,310,695
Number of Sequences: 539616
Number of extensions: 2824702
Number of successful extensions: 5851
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5788
Number of HSP's gapped (non-prelim): 50
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)