Query psy7063
Match_columns 188
No_of_seqs 264 out of 1763
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 17:10:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1163 DRG Predicted GTPase [ 100.0 3.2E-47 6.9E-52 326.2 17.6 146 43-188 196-365 (365)
2 KOG1486|consensus 100.0 3.2E-43 6.9E-48 293.7 16.3 137 52-188 204-364 (364)
3 KOG1487|consensus 100.0 4.1E-39 8.8E-44 269.8 10.2 142 47-188 192-358 (358)
4 COG2262 HflX GTPases [General 99.8 6E-20 1.3E-24 162.2 13.9 133 2-136 161-356 (411)
5 cd01666 TGS_DRG_C TGS_DRG_C: 99.8 1.8E-19 3.8E-24 125.9 5.7 51 137-187 1-75 (75)
6 PRK09602 translation-associate 99.7 1.1E-16 2.3E-21 143.1 11.5 118 69-187 199-394 (396)
7 cd01896 DRG The developmentall 99.7 1E-16 2.2E-21 133.5 9.9 95 49-143 139-233 (233)
8 TIGR03156 GTP_HflX GTP-binding 99.5 1.7E-13 3.7E-18 120.7 14.1 131 3-135 159-351 (351)
9 PRK11058 GTPase HflX; Provisio 99.4 1E-11 2.2E-16 112.1 14.3 133 2-136 166-362 (426)
10 PTZ00258 GTP-binding protein; 99.4 2.2E-12 4.7E-17 115.1 9.4 113 69-185 202-384 (390)
11 cd04938 TGS_Obg-like TGS_Obg-l 99.3 2.7E-12 5.9E-17 89.9 3.7 49 137-187 1-76 (76)
12 COG1160 Predicted GTPases [Gen 99.3 2.9E-11 6.3E-16 108.6 10.5 127 46-177 67-205 (444)
13 COG1159 Era GTPase [General fu 99.2 3.5E-11 7.7E-16 103.1 9.6 117 29-157 55-192 (298)
14 KOG0410|consensus 99.1 2.2E-10 4.9E-15 99.5 8.7 129 3-136 149-341 (410)
15 cd01878 HflX HflX subfamily. 99.1 5.3E-09 1.1E-13 84.1 14.0 131 3-135 11-204 (204)
16 PRK05291 trmE tRNA modificatio 98.9 1E-08 2.3E-13 93.1 12.5 131 2-136 187-370 (449)
17 cd01669 TGS_Ygr210_C TGS_Ygr21 98.9 1.5E-09 3.3E-14 75.9 4.3 48 137-187 1-76 (76)
18 TIGR00436 era GTP-binding prot 98.8 3.2E-08 6.9E-13 83.8 10.8 98 29-137 49-165 (270)
19 PRK09601 GTP-binding protein Y 98.8 1.4E-08 3E-13 90.1 8.7 112 69-185 181-360 (364)
20 COG0486 ThdF Predicted GTPase 98.8 6.7E-08 1.4E-12 87.4 11.1 80 59-138 293-378 (454)
21 cd01858 NGP_1 NGP-1. Autoanti 98.7 5.3E-08 1.2E-12 75.7 7.9 79 59-137 5-96 (157)
22 COG0012 Predicted GTPase, prob 98.7 5.4E-08 1.2E-12 86.0 7.5 115 70-186 189-371 (372)
23 PRK15494 era GTPase Era; Provi 98.6 1.2E-07 2.5E-12 83.3 8.6 117 30-156 102-235 (339)
24 cd01856 YlqF YlqF. Proteins o 98.6 1E-07 2.2E-12 75.3 6.8 78 59-137 16-102 (171)
25 cd01855 YqeH YqeH. YqeH is an 98.6 9.4E-08 2E-12 76.5 6.4 84 52-136 25-125 (190)
26 PRK00089 era GTPase Era; Revie 98.6 5.8E-07 1.3E-11 76.6 11.3 105 29-136 54-171 (292)
27 PF00009 GTP_EFTU: Elongation 98.6 5.8E-07 1.3E-11 71.7 10.5 78 59-136 90-187 (188)
28 PRK09866 hypothetical protein; 98.5 4.8E-07 1E-11 85.3 9.7 76 59-134 255-351 (741)
29 cd01859 MJ1464 MJ1464. This f 98.5 4.9E-07 1.1E-11 69.9 8.1 75 60-136 10-96 (156)
30 cd01888 eIF2_gamma eIF2-gamma 98.5 1.5E-06 3.3E-11 70.5 11.0 98 28-136 83-199 (203)
31 cd01898 Obg Obg subfamily. Th 98.4 1.8E-06 3.9E-11 66.5 9.4 76 60-135 76-170 (170)
32 KOG1489|consensus 98.4 1.1E-06 2.4E-11 76.5 8.8 88 38-134 259-365 (366)
33 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.4 1.9E-06 4.1E-11 68.4 9.5 77 59-135 72-169 (183)
34 cd01890 LepA LepA subfamily. 98.4 1.4E-06 3E-11 67.9 8.5 77 59-135 87-176 (179)
35 cd01894 EngA1 EngA1 subfamily. 98.4 2.6E-06 5.7E-11 64.3 9.1 75 59-135 73-157 (157)
36 PRK03003 GTP-binding protein D 98.4 1.2E-06 2.7E-11 79.9 8.4 83 53-137 108-200 (472)
37 TIGR02729 Obg_CgtA Obg family 98.4 2.9E-06 6.3E-11 74.3 10.1 76 60-135 233-328 (329)
38 cd04171 SelB SelB subfamily. 98.4 6E-06 1.3E-10 62.9 10.6 75 59-133 71-163 (164)
39 PRK12298 obgE GTPase CgtA; Rev 98.4 2.6E-06 5.7E-11 76.3 9.8 79 60-138 235-335 (390)
40 PRK12299 obgE GTPase CgtA; Rev 98.4 2.8E-06 6E-11 74.7 9.7 78 60-137 234-329 (335)
41 cd01864 Rab19 Rab19 subfamily. 98.4 4.1E-06 9E-11 64.6 9.6 78 58-135 71-165 (165)
42 TIGR03596 GTPase_YlqF ribosome 98.3 1.3E-06 2.8E-11 74.5 7.2 76 59-138 18-105 (276)
43 PRK12296 obgE GTPase CgtA; Rev 98.3 2.8E-06 6E-11 78.3 9.8 80 60-139 234-343 (500)
44 cd01881 Obg_like The Obg-like 98.3 3.3E-06 7.2E-11 65.1 8.7 51 85-135 119-176 (176)
45 PF02421 FeoB_N: Ferrous iron 98.3 8.6E-07 1.9E-11 70.1 5.4 70 60-131 76-156 (156)
46 TIGR03594 GTPase_EngA ribosome 98.3 4.6E-06 9.9E-11 74.6 10.7 78 59-136 251-344 (429)
47 cd01892 Miro2 Miro2 subfamily. 98.3 3.2E-06 6.9E-11 66.3 8.5 76 60-135 75-165 (169)
48 cd01897 NOG NOG1 is a nucleola 98.3 3.4E-06 7.4E-11 65.0 8.5 50 86-135 113-167 (168)
49 PF10662 PduV-EutP: Ethanolami 98.3 1.5E-06 3.2E-11 67.8 6.4 90 32-132 40-142 (143)
50 PRK00093 GTP-binding protein D 98.3 5.5E-06 1.2E-10 74.3 10.8 76 58-135 251-343 (435)
51 TIGR03594 GTPase_EngA ribosome 98.3 2.7E-06 5.8E-11 76.1 8.6 86 50-137 66-161 (429)
52 cd01849 YlqF_related_GTPase Yl 98.3 2.8E-06 6E-11 66.0 7.6 72 64-135 1-84 (155)
53 cd04124 RabL2 RabL2 subfamily. 98.3 5.6E-06 1.2E-10 64.0 9.2 77 59-135 69-157 (161)
54 smart00177 ARF ARF-like small 98.3 4.4E-06 9.6E-11 65.8 8.5 76 60-135 78-173 (175)
55 PRK12297 obgE GTPase CgtA; Rev 98.3 4.8E-06 1E-10 75.4 9.8 81 60-140 234-331 (424)
56 cd01889 SelB_euk SelB subfamil 98.3 8.2E-06 1.8E-10 65.1 10.0 77 60-136 89-186 (192)
57 cd04164 trmE TrmE (MnmE, ThdF, 98.3 3.9E-06 8.5E-11 63.2 7.7 75 60-135 78-156 (157)
58 PTZ00327 eukaryotic translatio 98.3 5.8E-06 1.3E-10 75.6 10.1 97 29-136 118-233 (460)
59 TIGR02528 EutP ethanolamine ut 98.3 3.5E-06 7.5E-11 63.5 7.2 72 60-132 60-141 (142)
60 cd04157 Arl6 Arl6 subfamily. 98.3 6.9E-06 1.5E-10 62.6 8.9 74 60-133 66-161 (162)
61 PRK04213 GTP-binding protein; 98.3 7.8E-06 1.7E-10 65.4 9.5 51 85-136 129-192 (201)
62 cd04149 Arf6 Arf6 subfamily. 98.2 6.2E-06 1.4E-10 64.6 8.6 75 59-133 73-167 (168)
63 smart00174 RHO Rho (Ras homolo 98.2 4.3E-06 9.4E-11 64.8 7.5 78 58-135 65-171 (174)
64 PRK03003 GTP-binding protein D 98.2 1E-05 2.2E-10 74.0 10.9 79 58-136 289-382 (472)
65 cd04101 RabL4 RabL4 (Rab-like4 98.2 6.2E-06 1.3E-10 63.2 8.1 78 58-135 71-163 (164)
66 cd04112 Rab26 Rab26 subfamily. 98.2 1.1E-05 2.4E-10 64.3 9.8 83 59-141 70-168 (191)
67 PRK09518 bifunctional cytidyla 98.2 4.5E-06 9.8E-11 79.9 8.8 82 53-136 345-436 (712)
68 PLN00223 ADP-ribosylation fact 98.2 9.1E-06 2E-10 64.7 9.2 76 60-135 82-177 (181)
69 PRK15467 ethanolamine utilizat 98.2 5.9E-06 1.3E-10 64.5 7.9 77 60-136 62-147 (158)
70 cd04151 Arl1 Arl1 subfamily. 98.2 6.7E-06 1.4E-10 63.1 8.1 75 59-133 63-157 (158)
71 cd04107 Rab32_Rab38 Rab38/Rab3 98.2 8.5E-06 1.8E-10 65.5 9.0 77 59-135 70-167 (201)
72 PTZ00099 rab6; Provisional 98.2 1.6E-05 3.5E-10 63.4 10.3 80 60-139 50-145 (176)
73 PRK09563 rbgA GTPase YlqF; Rev 98.2 3.2E-06 7E-11 72.5 6.6 75 59-137 21-107 (287)
74 cd04160 Arfrp1 Arfrp1 subfamil 98.2 5.4E-06 1.2E-10 63.8 7.1 75 59-133 70-166 (167)
75 PRK09518 bifunctional cytidyla 98.2 1.4E-05 3E-10 76.5 10.8 79 58-136 528-621 (712)
76 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.2 1.6E-05 3.5E-10 61.2 9.3 77 59-135 71-163 (166)
77 cd01895 EngA2 EngA2 subfamily. 98.2 2.8E-05 6E-10 59.2 10.5 76 59-134 81-173 (174)
78 cd04118 Rab24 Rab24 subfamily. 98.2 1.6E-05 3.6E-10 63.0 9.4 78 58-135 69-165 (193)
79 cd01862 Rab7 Rab7 subfamily. 98.2 1.2E-05 2.6E-10 61.9 8.4 77 59-135 69-166 (172)
80 cd01867 Rab8_Rab10_Rab13_like 98.2 2.1E-05 4.7E-10 60.9 9.7 78 58-135 71-164 (167)
81 cd01865 Rab3 Rab3 subfamily. 98.2 2.2E-05 4.8E-10 60.7 9.7 78 58-135 69-162 (165)
82 cd01861 Rab6 Rab6 subfamily. 98.1 1.8E-05 3.9E-10 60.4 9.0 77 59-135 69-161 (161)
83 cd04156 ARLTS1 ARLTS1 subfamil 98.1 1.1E-05 2.4E-10 61.5 7.9 74 60-133 65-159 (160)
84 PRK12289 GTPase RsgA; Reviewed 98.1 6.5E-06 1.4E-10 72.9 7.3 88 56-146 83-182 (352)
85 cd04138 H_N_K_Ras_like H-Ras/N 98.1 1.9E-05 4.1E-10 59.8 9.0 76 60-135 70-161 (162)
86 cd04145 M_R_Ras_like M-Ras/R-R 98.1 1.1E-05 2.4E-10 61.6 7.7 76 60-135 71-163 (164)
87 cd04142 RRP22 RRP22 subfamily. 98.1 1.5E-05 3.3E-10 64.5 8.6 76 59-134 77-172 (198)
88 cd01863 Rab18 Rab18 subfamily. 98.1 2.8E-05 6.1E-10 59.4 9.7 76 59-134 69-160 (161)
89 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 1.2E-05 2.6E-10 61.5 7.6 65 59-123 8-84 (141)
90 cd04150 Arf1_5_like Arf1-Arf5- 98.1 9.5E-06 2.1E-10 62.9 7.0 74 60-133 65-158 (159)
91 cd04136 Rap_like Rap-like subf 98.1 1.2E-05 2.5E-10 61.4 7.4 76 60-135 70-162 (163)
92 cd04129 Rho2 Rho2 subfamily. 98.1 1.4E-05 3E-10 63.5 8.1 88 59-148 69-183 (187)
93 cd04154 Arl2 Arl2 subfamily. 98.1 9.4E-06 2E-10 63.4 6.9 74 60-133 79-172 (173)
94 cd04132 Rho4_like Rho4-like su 98.1 1.9E-05 4.2E-10 62.2 8.7 78 58-135 68-166 (187)
95 cd04127 Rab27A Rab27a subfamil 98.1 3.3E-05 7.1E-10 60.3 9.9 79 57-135 81-176 (180)
96 cd04106 Rab23_lke Rab23-like s 98.1 2.9E-05 6.3E-10 59.3 9.4 76 59-134 71-161 (162)
97 smart00173 RAS Ras subfamily o 98.1 1.9E-05 4.1E-10 60.5 8.3 76 60-135 69-161 (164)
98 cd01860 Rab5_related Rab5-rela 98.1 3.5E-05 7.6E-10 58.9 9.8 77 59-135 70-162 (163)
99 PRK00093 GTP-binding protein D 98.1 1.3E-05 2.9E-10 71.9 8.5 82 52-135 70-161 (435)
100 cd04109 Rab28 Rab28 subfamily. 98.1 2.1E-05 4.6E-10 64.1 9.0 79 60-138 71-168 (215)
101 cd01868 Rab11_like Rab11-like. 98.1 3.4E-05 7.3E-10 59.3 9.6 78 58-135 71-164 (165)
102 cd04176 Rap2 Rap2 subgroup. T 98.1 9.3E-06 2E-10 62.3 6.5 76 60-135 70-162 (163)
103 cd01893 Miro1 Miro1 subfamily. 98.1 2.1E-05 4.5E-10 61.0 8.5 76 60-135 68-163 (166)
104 cd04119 RJL RJL (RabJ-Like) su 98.1 3.2E-05 6.9E-10 58.9 9.4 77 59-135 69-166 (168)
105 cd04159 Arl10_like Arl10-like 98.1 1.9E-05 4.2E-10 59.1 8.0 74 60-133 65-158 (159)
106 cd04147 Ras_dva Ras-dva subfam 98.1 2.9E-05 6.4E-10 62.3 9.5 82 59-140 67-167 (198)
107 cd04143 Rhes_like Rhes_like su 98.1 2.9E-05 6.4E-10 65.3 9.8 77 59-135 68-170 (247)
108 cd04140 ARHI_like ARHI subfami 98.1 1E-05 2.3E-10 62.5 6.6 76 59-134 69-163 (165)
109 PTZ00133 ADP-ribosylation fact 98.1 2.4E-05 5.1E-10 62.3 8.7 77 59-135 81-177 (182)
110 PRK13796 GTPase YqeH; Provisio 98.1 2.3E-05 4.9E-10 69.6 9.5 91 50-142 58-165 (365)
111 smart00178 SAR Sar1p-like memb 98.1 3.2E-05 6.9E-10 61.5 9.4 75 60-134 82-183 (184)
112 cd04123 Rab21 Rab21 subfamily. 98.1 4.2E-05 9.1E-10 57.9 9.7 77 59-135 69-161 (162)
113 cd04158 ARD1 ARD1 subfamily. 98.1 2.6E-05 5.5E-10 60.9 8.6 77 60-136 64-161 (169)
114 cd04175 Rap1 Rap1 subgroup. T 98.1 2.4E-05 5.1E-10 60.2 8.4 76 60-135 70-162 (164)
115 cd01871 Rac1_like Rac1-like su 98.1 2.8E-05 6E-10 61.3 8.9 77 58-134 68-173 (174)
116 cd01887 IF2_eIF5B IF2/eIF5B (i 98.1 2.7E-05 5.9E-10 59.6 8.6 77 59-135 70-165 (168)
117 cd04165 GTPBP1_like GTPBP1-lik 98.1 4.2E-05 9.1E-10 63.5 10.2 71 61-133 108-220 (224)
118 PRK13768 GTPase; Provisional 98.1 8.4E-05 1.8E-09 62.7 12.2 105 29-136 98-247 (253)
119 cd00877 Ran Ran (Ras-related n 98.1 2E-05 4.4E-10 61.4 7.9 76 60-135 70-158 (166)
120 cd04122 Rab14 Rab14 subfamily. 98.1 4.5E-05 9.9E-10 58.9 9.7 76 59-134 71-162 (166)
121 cd00881 GTP_translation_factor 98.0 2.7E-05 5.8E-10 60.6 8.4 77 60-136 83-187 (189)
122 cd04120 Rab12 Rab12 subfamily. 98.0 3.8E-05 8.2E-10 62.7 9.5 77 59-135 69-162 (202)
123 cd04130 Wrch_1 Wrch-1 subfamil 98.0 3E-05 6.6E-10 60.5 8.4 75 58-132 67-170 (173)
124 COG0532 InfB Translation initi 98.0 2.9E-05 6.3E-10 71.4 9.4 98 28-136 55-170 (509)
125 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.0 2.1E-05 4.6E-10 61.7 7.5 75 59-133 79-173 (174)
126 COG1160 Predicted GTPases [Gen 98.0 1.7E-05 3.7E-10 71.8 7.6 75 58-134 256-349 (444)
127 cd04128 Spg1 Spg1p. Spg1p (se 98.0 4.2E-05 9.1E-10 61.0 9.1 77 58-135 68-165 (182)
128 cd04121 Rab40 Rab40 subfamily. 98.0 4.3E-05 9.3E-10 61.6 9.2 77 59-135 75-166 (189)
129 cd04139 RalA_RalB RalA/RalB su 98.0 5E-05 1.1E-09 57.7 9.1 78 59-136 68-162 (164)
130 PF02824 TGS: TGS domain; Int 98.0 1.6E-06 3.6E-11 57.7 0.6 43 138-187 1-60 (60)
131 PRK04000 translation initiatio 98.0 3.5E-05 7.7E-10 69.4 9.4 78 59-136 105-201 (411)
132 cd04134 Rho3 Rho3 subfamily. 98.0 4.4E-05 9.6E-10 60.8 8.9 78 58-135 67-173 (189)
133 cd01874 Cdc42 Cdc42 subfamily. 98.0 2.8E-05 6.2E-10 61.3 7.7 76 58-133 68-172 (175)
134 cd04144 Ras2 Ras2 subfamily. 98.0 4.2E-05 9.2E-10 60.9 8.7 78 59-136 67-163 (190)
135 TIGR00475 selB selenocysteine- 98.0 4.7E-05 1E-09 71.5 10.2 80 59-138 70-168 (581)
136 cd04116 Rab9 Rab9 subfamily. 98.0 8E-05 1.7E-09 57.5 9.9 76 59-134 74-169 (170)
137 PRK10512 selenocysteinyl-tRNA- 98.0 5E-05 1.1E-09 71.8 10.3 78 59-136 71-166 (614)
138 cd01866 Rab2 Rab2 subfamily. 98.0 7.6E-05 1.7E-09 57.9 9.7 76 60-135 74-165 (168)
139 cd04126 Rab20 Rab20 subfamily. 98.0 3.8E-05 8.3E-10 63.6 8.4 76 60-135 65-189 (220)
140 cd00878 Arf_Arl Arf (ADP-ribos 98.0 4.5E-05 9.7E-10 58.2 8.2 75 59-133 63-157 (158)
141 cd04163 Era Era subfamily. Er 98.0 4.9E-05 1.1E-09 57.1 8.3 78 58-135 78-168 (168)
142 cd00879 Sar1 Sar1 subfamily. 98.0 5.8E-05 1.3E-09 59.6 9.0 77 59-135 83-190 (190)
143 cd04114 Rab30 Rab30 subfamily. 98.0 4.2E-05 9.1E-10 58.9 8.0 76 59-134 76-167 (169)
144 cd01879 FeoB Ferrous iron tran 98.0 3.4E-05 7.4E-10 58.4 7.4 75 61-135 73-156 (158)
145 cd04110 Rab35 Rab35 subfamily. 98.0 7E-05 1.5E-09 60.2 9.5 78 59-136 75-167 (199)
146 cd00157 Rho Rho (Ras homology) 98.0 3.2E-05 7E-10 59.4 7.2 75 59-133 68-170 (171)
147 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.9 6.8E-05 1.5E-09 58.9 9.1 77 59-135 70-163 (172)
148 cd01884 EF_Tu EF-Tu subfamily. 97.9 8.8E-05 1.9E-09 60.2 9.9 67 58-124 84-171 (195)
149 cd04133 Rop_like Rop subfamily 97.9 4.2E-05 9.2E-10 60.9 7.8 78 58-135 68-172 (176)
150 smart00175 RAB Rab subfamily o 97.9 9.2E-05 2E-09 56.4 9.4 77 59-135 69-161 (164)
151 cd00876 Ras Ras family. The R 97.9 8.6E-05 1.9E-09 56.0 9.1 76 59-134 67-159 (160)
152 TIGR03680 eif2g_arch translati 97.9 5.4E-05 1.2E-09 68.0 9.2 78 59-136 100-196 (406)
153 cd04125 RabA_like RabA-like su 97.9 0.00012 2.5E-09 58.0 10.0 78 58-135 68-161 (188)
154 cd00880 Era_like Era (E. coli 97.9 7E-05 1.5E-09 55.4 8.3 76 59-134 72-162 (163)
155 COG1084 Predicted GTPase [Gene 97.9 0.00013 2.8E-09 63.9 11.0 127 6-134 140-334 (346)
156 TIGR01393 lepA GTP-binding pro 97.9 4.4E-05 9.6E-10 71.9 8.7 78 59-136 90-180 (595)
157 cd01870 RhoA_like RhoA-like su 97.9 7.3E-05 1.6E-09 57.9 8.6 77 58-134 68-173 (175)
158 cd01899 Ygr210 Ygr210 subfamil 97.9 2.1E-05 4.5E-10 68.8 6.0 81 59-141 189-274 (318)
159 cd04155 Arl3 Arl3 subfamily. 97.9 6.5E-05 1.4E-09 58.1 8.2 75 59-133 78-172 (173)
160 cd01875 RhoG RhoG subfamily. 97.9 9.5E-05 2E-09 59.2 9.2 78 58-135 70-176 (191)
161 cd04108 Rab36_Rab34 Rab34/Rab3 97.9 8.4E-05 1.8E-09 58.3 8.6 78 58-135 68-164 (170)
162 cd00154 Rab Rab family. Rab G 97.9 0.00012 2.6E-09 54.6 9.1 75 58-132 68-158 (159)
163 PRK05433 GTP-binding protein L 97.9 6.6E-05 1.4E-09 70.8 9.2 78 59-136 94-184 (600)
164 cd04135 Tc10 TC10 subfamily. 97.9 7.6E-05 1.6E-09 57.8 8.1 77 58-134 67-172 (174)
165 TIGR03597 GTPase_YqeH ribosome 97.9 4.4E-05 9.5E-10 67.6 7.6 91 51-142 53-159 (360)
166 cd04148 RGK RGK subfamily. Th 97.9 8.4E-05 1.8E-09 61.1 8.8 76 62-137 72-164 (221)
167 COG0536 Obg Predicted GTPase [ 97.9 3.6E-05 7.7E-10 67.7 6.7 80 60-139 235-336 (369)
168 PTZ00369 Ras-like protein; Pro 97.9 8.7E-05 1.9E-09 59.0 8.4 76 60-135 74-166 (189)
169 KOG1423|consensus 97.9 7.9E-05 1.7E-09 64.9 8.5 77 58-135 151-270 (379)
170 cd01854 YjeQ_engC YjeQ/EngC. 97.8 4.9E-05 1.1E-09 65.2 7.1 74 60-133 76-161 (287)
171 TIGR00157 ribosome small subun 97.8 4.2E-05 9.1E-10 64.3 6.5 85 59-146 33-130 (245)
172 PRK14845 translation initiatio 97.8 9E-05 2E-09 73.6 9.4 97 27-134 525-671 (1049)
173 cd04113 Rab4 Rab4 subfamily. 97.8 0.00019 4.1E-09 54.8 9.4 76 59-134 69-160 (161)
174 TIGR00450 mnmE_trmE_thdF tRNA 97.8 0.00051 1.1E-08 62.6 13.6 76 59-136 279-360 (442)
175 PRK00098 GTPase RsgA; Reviewed 97.8 4.8E-05 1E-09 65.7 6.6 74 59-132 77-163 (298)
176 cd04117 Rab15 Rab15 subfamily. 97.8 0.00022 4.7E-09 55.2 9.7 76 59-134 69-160 (161)
177 smart00176 RAN Ran (Ras-relate 97.8 0.00012 2.6E-09 59.6 8.5 77 59-135 64-153 (200)
178 PLN03118 Rab family protein; P 97.8 0.00016 3.5E-09 58.5 9.2 77 59-135 82-176 (211)
179 cd04146 RERG_RasL11_like RERG/ 97.8 0.00011 2.3E-09 56.7 7.8 76 60-135 69-163 (165)
180 PLN03110 Rab GTPase; Provision 97.8 0.00017 3.7E-09 59.0 9.3 80 58-137 80-175 (216)
181 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.8 0.00015 3.3E-09 60.5 9.1 80 56-135 78-187 (232)
182 cd01883 EF1_alpha Eukaryotic e 97.8 0.00012 2.5E-09 60.2 8.1 67 59-125 97-194 (219)
183 PRK12736 elongation factor Tu; 97.8 0.00028 6.1E-09 63.1 11.2 77 58-136 94-201 (394)
184 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.8 0.00015 3.3E-09 58.0 8.5 81 53-133 67-177 (182)
185 cd04137 RheB Rheb (Ras Homolog 97.8 0.00021 4.5E-09 55.8 9.0 77 60-136 70-163 (180)
186 COG3276 SelB Selenocysteine-sp 97.7 0.00018 3.8E-09 65.1 9.2 94 30-136 52-162 (447)
187 PLN03071 GTP-binding nuclear p 97.7 0.00013 2.7E-09 60.0 7.6 75 60-135 83-171 (219)
188 cd04111 Rab39 Rab39 subfamily. 97.7 0.00027 5.8E-09 57.6 9.5 77 59-135 72-165 (211)
189 cd04177 RSR1 RSR1 subgroup. R 97.7 0.00019 4.1E-09 55.6 7.9 76 60-135 70-163 (168)
190 cd01873 RhoBTB RhoBTB subfamil 97.7 0.00021 4.6E-09 57.8 8.4 75 59-133 84-193 (195)
191 PRK09554 feoB ferrous iron tra 97.7 0.00027 5.9E-09 68.5 10.1 74 60-135 83-167 (772)
192 CHL00071 tufA elongation facto 97.7 0.00036 7.9E-09 62.7 10.3 66 58-123 94-180 (409)
193 TIGR00437 feoB ferrous iron tr 97.7 0.00012 2.7E-09 68.9 7.5 76 60-135 70-154 (591)
194 cd04131 Rnd Rnd subfamily. Th 97.7 0.00026 5.7E-09 56.2 8.4 79 55-133 65-173 (178)
195 cd01891 TypA_BipA TypA (tyrosi 97.7 0.00022 4.8E-09 56.9 7.9 68 59-126 85-172 (194)
196 PF08438 MMR_HSR1_C: GTPase of 97.7 3.3E-05 7.2E-10 57.6 2.8 51 92-142 1-106 (109)
197 cd04115 Rab33B_Rab33A Rab33B/R 97.7 0.00065 1.4E-08 52.8 10.2 78 58-135 71-168 (170)
198 PRK09435 membrane ATPase/prote 97.6 0.00017 3.6E-09 63.5 7.4 76 60-136 167-260 (332)
199 cd04103 Centaurin_gamma Centau 97.6 0.00036 7.8E-09 54.3 8.4 75 60-134 63-157 (158)
200 CHL00189 infB translation init 97.6 0.00023 5E-09 68.6 8.3 78 59-136 315-410 (742)
201 PRK12288 GTPase RsgA; Reviewed 97.6 0.00037 7.9E-09 61.7 9.0 84 60-146 118-215 (347)
202 COG0481 LepA Membrane GTPase L 97.6 0.0002 4.3E-09 65.6 7.3 70 67-136 105-186 (603)
203 TIGR00231 small_GTP small GTP- 97.6 0.00074 1.6E-08 49.8 9.3 75 58-132 76-160 (161)
204 KOG0462|consensus 97.6 0.00028 6.1E-09 65.5 8.2 77 60-136 146-235 (650)
205 TIGR00750 lao LAO/AO transport 97.6 0.0002 4.3E-09 61.8 6.7 54 85-138 171-240 (300)
206 TIGR00491 aIF-2 translation in 97.6 0.00025 5.4E-09 66.8 7.9 75 59-133 89-213 (590)
207 cd00882 Ras_like_GTPase Ras-li 97.6 0.00051 1.1E-08 49.8 7.9 74 59-132 65-156 (157)
208 PRK01889 GTPase RsgA; Reviewed 97.5 0.00041 8.8E-09 61.5 8.3 73 60-132 110-193 (356)
209 cd04162 Arl9_Arfrp2_like Arl9/ 97.5 0.00031 6.8E-09 54.6 6.6 74 59-132 64-162 (164)
210 COG5257 GCD11 Translation init 97.5 0.00095 2.1E-08 58.7 10.0 51 86-136 140-202 (415)
211 PRK12317 elongation factor 1-a 97.5 0.00059 1.3E-08 61.4 9.0 67 59-126 104-195 (425)
212 PRK05124 cysN sulfate adenylyl 97.5 0.00037 8E-09 64.0 7.7 69 59-128 127-217 (474)
213 COG0370 FeoB Fe2+ transport sy 97.5 0.00071 1.5E-08 64.0 9.5 95 30-136 52-164 (653)
214 PF00025 Arf: ADP-ribosylation 97.5 0.00062 1.3E-08 53.9 7.8 75 60-134 79-174 (175)
215 KOG1145|consensus 97.4 0.00072 1.6E-08 62.9 9.0 80 58-137 220-317 (683)
216 PRK00454 engB GTP-binding prot 97.4 0.0013 2.9E-08 51.8 9.6 52 85-136 134-194 (196)
217 PLN03108 Rab family protein; P 97.4 0.0013 2.8E-08 53.4 9.8 75 60-134 76-166 (210)
218 TIGR03598 GTPase_YsxC ribosome 97.4 0.00048 1.1E-08 54.2 6.9 62 62-125 100-179 (179)
219 cd04161 Arl2l1_Arl13_like Arl2 97.4 0.00064 1.4E-08 53.0 7.5 74 59-132 63-165 (167)
220 PRK00049 elongation factor Tu; 97.4 0.0013 2.7E-08 59.0 10.2 77 58-136 94-203 (396)
221 cd01876 YihA_EngB The YihA (En 97.4 0.0011 2.5E-08 49.8 8.2 73 61-135 80-170 (170)
222 TIGR00487 IF-2 translation ini 97.4 0.00065 1.4E-08 64.0 8.1 76 58-133 154-247 (587)
223 TIGR00101 ureG urease accessor 97.4 0.00058 1.3E-08 55.6 6.9 48 89-136 140-196 (199)
224 PRK05506 bifunctional sulfate 97.4 0.0011 2.4E-08 62.8 9.6 67 59-126 124-211 (632)
225 COG5256 TEF1 Translation elong 97.4 0.0012 2.5E-08 59.5 9.1 117 58-186 104-267 (428)
226 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.4 0.0015 3.3E-08 54.1 9.3 81 54-134 64-174 (222)
227 PRK12735 elongation factor Tu; 97.4 0.001 2.2E-08 59.6 8.7 79 58-136 94-203 (396)
228 COG0218 Predicted GTPase [Gene 97.3 0.0027 5.8E-08 52.1 10.2 91 45-137 90-198 (200)
229 PRK05306 infB translation init 97.3 0.00066 1.4E-08 65.9 7.7 76 59-134 357-450 (787)
230 TIGR00485 EF-Tu translation el 97.3 0.0013 2.9E-08 58.7 8.9 76 59-134 95-199 (394)
231 PLN03127 Elongation factor Tu; 97.3 0.0015 3.4E-08 59.5 9.4 78 59-136 144-252 (447)
232 PRK04004 translation initiatio 97.3 0.00088 1.9E-08 63.1 8.0 76 58-133 90-215 (586)
233 KOG0078|consensus 97.3 0.00084 1.8E-08 55.3 6.5 86 43-128 65-166 (207)
234 TIGR00483 EF-1_alpha translati 97.3 0.0018 3.8E-08 58.4 9.2 68 59-126 105-197 (426)
235 TIGR00073 hypB hydrogenase acc 97.3 0.00066 1.4E-08 55.2 5.9 49 86-134 148-205 (207)
236 COG2895 CysN GTPases - Sulfate 97.2 0.0012 2.6E-08 58.6 7.7 67 58-124 105-191 (431)
237 cd04166 CysN_ATPS CysN_ATPS su 97.2 0.0011 2.3E-08 54.0 6.3 68 59-126 97-184 (208)
238 TIGR02034 CysN sulfate adenyly 97.2 0.0029 6.3E-08 56.9 9.5 67 59-126 100-187 (406)
239 KOG0094|consensus 97.1 0.003 6.4E-08 51.9 8.4 100 43-142 75-191 (221)
240 KOG0092|consensus 97.1 0.0012 2.5E-08 53.9 5.8 80 60-139 75-170 (200)
241 PTZ00141 elongation factor 1- 97.1 0.0035 7.7E-08 57.1 9.2 69 58-126 104-203 (446)
242 COG0050 TufB GTPases - transla 97.0 0.0024 5.3E-08 55.7 7.3 103 80-186 121-246 (394)
243 PRK10463 hydrogenase nickel in 97.0 0.0012 2.6E-08 57.2 5.5 48 87-134 231-287 (290)
244 cd04178 Nucleostemin_like Nucl 97.0 0.0042 9.1E-08 49.5 7.9 41 64-104 1-48 (172)
245 PF03029 ATP_bind_1: Conserved 97.0 0.0048 1E-07 51.8 8.5 122 3-136 75-237 (238)
246 PRK10218 GTP-binding protein; 97.0 0.0024 5.2E-08 60.4 7.4 78 59-136 88-195 (607)
247 PLN03126 Elongation factor Tu; 96.9 0.0085 1.8E-07 55.2 10.6 65 58-122 163-248 (478)
248 KOG2484|consensus 96.9 0.002 4.3E-08 57.9 5.8 49 59-107 143-198 (435)
249 TIGR01394 TypA_BipA GTP-bindin 96.9 0.0037 8E-08 59.0 7.8 78 59-136 84-191 (594)
250 PF00071 Ras: Ras family; Int 96.8 0.0065 1.4E-07 46.2 7.7 76 60-135 69-160 (162)
251 cd04104 p47_IIGP_like p47 (47- 96.8 0.0077 1.7E-07 48.4 8.3 78 58-137 76-185 (197)
252 KOG1491|consensus 96.8 0.0066 1.4E-07 53.7 8.3 118 68-185 205-387 (391)
253 KOG0084|consensus 96.7 0.01 2.2E-07 48.7 8.2 90 46-135 65-171 (205)
254 PLN00043 elongation factor 1-a 96.7 0.014 3.1E-07 53.3 10.1 69 58-126 104-203 (447)
255 KOG0093|consensus 96.7 0.0059 1.3E-07 48.3 6.3 82 52-133 83-180 (193)
256 PTZ00132 GTP-binding nuclear p 96.5 0.014 3E-07 47.2 8.0 76 60-135 79-167 (215)
257 KOG0461|consensus 96.5 0.027 5.9E-07 50.3 10.0 110 31-160 73-208 (522)
258 TIGR00691 spoT_relA (p)ppGpp s 96.5 0.0028 6.1E-08 60.8 4.3 46 136-188 360-422 (683)
259 PRK10872 relA (p)ppGpp synthet 96.5 0.0037 8E-08 60.4 4.9 45 136-187 404-465 (743)
260 cd04167 Snu114p Snu114p subfam 96.5 0.022 4.7E-07 46.3 8.7 42 58-99 90-136 (213)
261 COG1161 Predicted GTPases [Gen 96.4 0.0073 1.6E-07 52.8 5.9 67 59-129 31-110 (322)
262 cd01886 EF-G Elongation factor 96.4 0.0099 2.1E-07 50.7 6.4 62 58-121 83-160 (270)
263 KOG0075|consensus 96.4 0.014 3E-07 46.2 6.6 85 51-136 78-182 (186)
264 COG4917 EutP Ethanolamine util 96.3 0.013 2.9E-07 45.1 6.1 74 59-134 61-144 (148)
265 KOG1191|consensus 96.1 0.0088 1.9E-07 55.1 5.0 86 58-143 344-457 (531)
266 COG0378 HypB Ni2+-binding GTPa 96.1 0.0089 1.9E-07 49.1 4.5 48 88-135 144-200 (202)
267 COG2229 Predicted GTPase [Gene 95.9 0.063 1.4E-06 43.6 8.6 73 61-134 90-176 (187)
268 KOG1424|consensus 95.9 0.02 4.3E-07 53.1 6.3 62 59-120 171-244 (562)
269 KOG1144|consensus 95.9 0.035 7.5E-07 53.7 7.8 102 24-136 536-687 (1064)
270 cd04168 TetM_like Tet(M)-like 95.6 0.048 1E-06 45.5 7.0 40 59-100 84-130 (237)
271 cd01882 BMS1 Bms1. Bms1 is an 95.5 0.077 1.7E-06 43.8 8.0 65 60-124 101-184 (225)
272 KOG0076|consensus 95.5 0.019 4.2E-07 46.4 4.1 77 60-136 90-187 (197)
273 cd01885 EF2 EF2 (for archaea a 95.5 0.055 1.2E-06 44.9 7.0 42 58-99 92-138 (222)
274 KOG1532|consensus 95.4 0.037 8.1E-07 48.0 5.8 52 85-136 180-264 (366)
275 COG1162 Predicted GTPases [Gen 95.3 0.045 9.7E-07 47.7 6.1 59 85-146 109-174 (301)
276 KOG0458|consensus 95.1 0.08 1.7E-06 49.7 7.5 67 58-124 274-370 (603)
277 PRK13351 elongation factor G; 95.1 0.053 1.2E-06 51.9 6.4 27 113-139 255-281 (687)
278 PRK12740 elongation factor G; 95.1 0.047 1E-06 52.0 6.0 26 113-138 239-264 (668)
279 KOG0395|consensus 95.0 0.22 4.8E-06 40.5 9.1 77 60-136 72-165 (196)
280 PRK11092 bifunctional (p)ppGpp 94.9 0.039 8.5E-07 53.2 5.1 25 163-187 423-447 (702)
281 KOG0460|consensus 94.9 0.057 1.2E-06 48.1 5.6 99 84-186 167-290 (449)
282 KOG0088|consensus 94.8 0.07 1.5E-06 42.8 5.5 75 60-134 83-173 (218)
283 KOG0083|consensus 94.8 0.051 1.1E-06 42.5 4.5 102 46-148 54-171 (192)
284 PF06858 NOG1: Nucleolar GTP-b 94.8 0.062 1.4E-06 35.6 4.3 36 62-97 13-58 (58)
285 cd01852 AIG1 AIG1 (avrRpt2-ind 94.8 0.14 3E-06 40.9 7.3 108 29-136 50-184 (196)
286 KOG0073|consensus 94.6 0.22 4.8E-06 40.0 7.7 67 60-126 81-168 (185)
287 KOG2423|consensus 94.5 0.14 3E-06 46.6 7.1 76 59-134 210-298 (572)
288 KOG0070|consensus 94.4 0.17 3.7E-06 41.0 6.9 77 60-136 82-178 (181)
289 PRK00741 prfC peptide chain re 94.4 0.09 1.9E-06 49.1 6.0 26 113-138 251-276 (526)
290 PF03308 ArgK: ArgK protein; 94.3 0.045 9.8E-07 46.8 3.5 50 87-136 168-230 (266)
291 PRK12739 elongation factor G; 94.3 0.068 1.5E-06 51.3 5.1 63 58-122 92-170 (691)
292 TIGR00484 EF-G translation elo 94.2 0.068 1.5E-06 51.3 5.0 63 58-122 94-172 (689)
293 COG1703 ArgK Putative periplas 94.2 0.15 3.2E-06 44.6 6.5 51 86-136 189-254 (323)
294 smart00053 DYNc Dynamin, GTPas 94.1 0.29 6.4E-06 41.2 8.0 75 27-101 124-207 (240)
295 KOG0098|consensus 93.9 0.22 4.8E-06 40.9 6.4 44 85-128 110-160 (216)
296 COG0317 SpoT Guanosine polypho 93.9 0.092 2E-06 50.5 5.0 57 125-187 374-448 (701)
297 KOG0466|consensus 93.7 0.12 2.5E-06 45.7 4.8 51 86-136 179-241 (466)
298 KOG0095|consensus 93.6 0.17 3.6E-06 40.3 5.2 91 49-139 66-173 (213)
299 PF08477 Miro: Miro-like prote 93.5 0.11 2.4E-06 37.4 3.9 38 60-97 71-119 (119)
300 PRK07560 elongation factor EF- 93.3 0.29 6.4E-06 47.3 7.5 40 58-99 106-152 (731)
301 PRK00007 elongation factor G; 93.2 0.14 3E-06 49.3 4.9 62 58-121 94-171 (693)
302 KOG1490|consensus 93.1 0.26 5.7E-06 45.9 6.4 94 32-126 219-331 (620)
303 KOG0079|consensus 93.0 0.54 1.2E-05 37.4 7.1 89 46-134 64-167 (198)
304 KOG0072|consensus 92.9 0.31 6.8E-06 38.6 5.7 77 60-136 83-179 (182)
305 KOG0086|consensus 92.9 0.53 1.2E-05 37.6 7.0 76 51-126 71-161 (214)
306 KOG0087|consensus 92.8 0.46 1E-05 39.5 6.8 58 85-142 118-186 (222)
307 PF06071 YchF-GTPase_C: Protei 92.4 0.056 1.2E-06 38.5 0.9 18 169-186 65-82 (84)
308 COG1217 TypA Predicted membran 91.8 0.79 1.7E-05 42.6 7.7 52 85-137 119-196 (603)
309 PF09439 SRPRB: Signal recogni 91.6 0.53 1.1E-05 38.1 5.8 64 29-100 50-126 (181)
310 PRK01777 hypothetical protein; 91.6 0.13 2.9E-06 37.3 2.1 20 167-186 55-74 (95)
311 TIGR00503 prfC peptide chain r 91.5 0.26 5.7E-06 46.0 4.5 41 59-99 100-145 (527)
312 PF01926 MMR_HSR1: 50S ribosom 91.2 0.86 1.9E-05 32.9 6.2 36 60-95 77-116 (116)
313 KOG0394|consensus 90.9 1.4 3.1E-05 36.1 7.5 112 45-159 64-199 (210)
314 cd04102 RabL3 RabL3 (Rab-like3 90.7 0.49 1.1E-05 38.5 4.9 43 58-100 73-143 (202)
315 cd04105 SR_beta Signal recogni 90.4 0.73 1.6E-05 37.2 5.7 41 60-100 69-123 (203)
316 TIGR00092 GTP-binding protein 90.3 0.31 6.7E-06 43.7 3.6 59 123-185 270-364 (368)
317 KOG0091|consensus 90.1 2 4.4E-05 34.8 7.7 76 61-136 81-177 (213)
318 KOG2485|consensus 90.0 0.52 1.1E-05 41.4 4.6 40 58-101 42-88 (335)
319 KOG0080|consensus 89.8 0.43 9.3E-06 38.5 3.7 93 42-134 63-172 (209)
320 PF03658 Ub-RnfH: RnfH family 89.8 0.17 3.8E-06 36.0 1.3 19 168-186 53-71 (84)
321 COG5258 GTPBP1 GTPase [General 89.8 1.2 2.5E-05 40.7 6.8 58 85-144 254-345 (527)
322 PLN00023 GTP-binding protein; 88.8 0.52 1.1E-05 41.7 3.8 42 59-100 103-165 (334)
323 COG1100 GTPase SAR1 and relate 88.7 4.3 9.3E-05 32.2 8.9 51 86-136 111-185 (219)
324 KOG0071|consensus 88.6 2.4 5.3E-05 33.5 7.0 51 85-135 117-177 (180)
325 KOG0081|consensus 88.4 2.3 4.9E-05 34.3 6.8 81 49-129 77-174 (219)
326 COG3596 Predicted GTPase [Gene 87.8 3.9 8.5E-05 35.5 8.4 78 60-137 115-223 (296)
327 cd01850 CDC_Septin CDC/Septin. 87.5 2.5 5.5E-05 36.0 7.2 43 62-104 114-161 (276)
328 cd04867 TGS_YchF_C TGS_YchF_C: 87.2 0.34 7.4E-06 34.4 1.4 17 169-185 65-81 (83)
329 KOG1707|consensus 86.3 0.49 1.1E-05 44.7 2.3 69 60-128 77-167 (625)
330 cd04169 RF3 RF3 subfamily. Pe 86.3 0.84 1.8E-05 38.8 3.6 42 59-100 91-137 (267)
331 KOG0097|consensus 86.3 1.1 2.5E-05 35.3 4.0 41 86-126 116-163 (215)
332 PTZ00416 elongation factor 2; 86.1 1.2 2.5E-05 44.0 4.9 40 58-99 111-157 (836)
333 cd01616 TGS The TGS domain, na 85.1 0.59 1.3E-05 28.9 1.6 23 165-187 38-60 (60)
334 cd04170 EF-G_bact Elongation f 83.7 1.5 3.2E-05 36.8 3.9 73 59-133 84-170 (268)
335 PF09138 Urm1: Urm1 (Ubiquitin 82.3 0.9 2E-05 33.1 1.8 68 114-188 22-92 (96)
336 TIGR02836 spore_IV_A stage IV 81.4 8.7 0.00019 35.5 8.0 76 60-137 141-238 (492)
337 cd01668 TGS_RelA_SpoT TGS_RelA 81.2 1.1 2.3E-05 28.5 1.7 23 165-187 38-60 (60)
338 cd03112 CobW_like The function 80.7 16 0.00034 28.3 8.5 64 27-98 86-158 (158)
339 PF06698 DUF1192: Protein of u 80.4 2 4.4E-05 28.5 2.8 20 3-22 26-45 (59)
340 PF14451 Ub-Mut7C: Mut7-C ubiq 80.1 1.5 3.2E-05 30.9 2.2 20 167-186 55-74 (81)
341 cd01764 Urm1 Urm1-like ubuitin 79.3 6.6 0.00014 28.2 5.5 61 120-187 27-89 (94)
342 KOG4252|consensus 78.7 2.6 5.7E-05 34.6 3.5 46 85-130 123-175 (246)
343 PF04508 Pox_A_type_inc: Viral 78.5 2.7 5.9E-05 22.7 2.4 18 2-19 5-22 (23)
344 TIGR00490 aEF-2 translation el 78.3 3.6 7.8E-05 39.9 4.9 42 58-99 105-151 (720)
345 COG5131 URM1 Ubiquitin-like pr 77.0 1.8 3.8E-05 31.2 1.8 15 173-187 77-91 (96)
346 KOG0393|consensus 75.4 6.2 0.00013 32.4 4.9 95 42-136 56-180 (198)
347 PRK06437 hypothetical protein; 73.7 2.8 6.1E-05 28.2 2.1 21 167-187 42-62 (67)
348 PRK05659 sulfur carrier protei 73.0 2.8 6E-05 27.6 1.9 19 169-187 43-61 (66)
349 PLN00116 translation elongatio 72.7 4.2 9E-05 40.2 3.8 40 58-99 117-163 (843)
350 PF05783 DLIC: Dynein light in 71.2 13 0.00028 34.5 6.4 71 86-160 196-285 (472)
351 COG2104 ThiS Sulfur transfer p 70.4 3.5 7.6E-05 28.0 2.0 21 167-187 39-63 (68)
352 cd00066 G-alpha G protein alph 70.0 4.9 0.00011 34.9 3.3 16 85-100 227-242 (317)
353 PRK06488 sulfur carrier protei 69.9 3.5 7.6E-05 27.2 1.9 14 174-187 47-60 (65)
354 PRK13695 putative NTPase; Prov 69.8 49 0.0011 25.5 8.9 87 46-135 80-172 (174)
355 smart00275 G_alpha G protein a 69.5 6.4 0.00014 34.7 4.0 15 85-99 250-264 (342)
356 KOG4423|consensus 69.2 7.2 0.00016 32.2 3.9 49 86-134 135-192 (229)
357 KOG3905|consensus 68.6 11 0.00025 33.8 5.2 72 86-160 222-311 (473)
358 KOG1954|consensus 68.1 9.1 0.0002 34.9 4.6 45 60-104 179-229 (532)
359 PF08946 Osmo_CC: Osmosensory 67.6 8.1 0.00018 24.3 3.0 22 2-23 16-37 (46)
360 PRK06944 sulfur carrier protei 66.3 5 0.00011 26.2 2.0 16 172-187 45-60 (65)
361 KOG4146|consensus 66.0 4.5 9.7E-05 29.4 1.8 16 172-187 81-96 (101)
362 cd01900 YchF YchF subfamily. 65.6 5.4 0.00012 34.2 2.6 57 69-126 177-243 (274)
363 PLN02799 Molybdopterin synthas 65.5 5 0.00011 27.5 2.0 57 113-186 20-76 (82)
364 KOG0096|consensus 65.5 8.5 0.00018 31.8 3.6 43 84-126 112-159 (216)
365 PRK07440 hypothetical protein; 65.3 4.9 0.00011 27.2 1.9 15 173-187 51-65 (70)
366 cd00565 ThiS ThiaminS ubiquiti 64.4 4.7 0.0001 26.6 1.6 21 167-187 36-60 (65)
367 KOG0090|consensus 64.3 18 0.00039 30.5 5.3 14 86-99 145-158 (238)
368 COG0523 Putative GTPases (G3E 64.2 12 0.00025 33.0 4.5 37 90-127 149-192 (323)
369 PF00350 Dynamin_N: Dynamin fa 64.0 14 0.00031 27.9 4.5 61 27-96 100-168 (168)
370 KOG0468|consensus 63.8 6.4 0.00014 38.3 2.9 39 59-99 217-262 (971)
371 COG1618 Predicted nucleotide k 62.9 81 0.0017 25.5 9.2 79 54-136 92-176 (179)
372 COG3640 CooC CO dehydrogenase 62.8 13 0.00029 31.6 4.3 45 55-99 148-198 (255)
373 PRK07696 sulfur carrier protei 62.8 5.9 0.00013 26.5 1.9 14 174-187 49-62 (67)
374 COG1977 MoaD Molybdopterin con 62.3 5.8 0.00012 27.8 1.8 18 169-186 61-78 (84)
375 cd04170 EF-G_bact Elongation f 62.3 7.4 0.00016 32.6 2.8 25 112-136 242-266 (268)
376 TIGR01683 thiS thiamine biosyn 62.0 6.3 0.00014 25.9 1.9 16 172-187 44-59 (64)
377 PF05049 IIGP: Interferon-indu 61.5 34 0.00075 30.8 7.0 103 27-139 85-221 (376)
378 PRK08364 sulfur carrier protei 60.7 7.4 0.00016 26.2 2.1 21 167-187 45-65 (70)
379 KOG2486|consensus 60.2 9.4 0.0002 33.4 3.1 54 83-136 245-316 (320)
380 KOG1707|consensus 60.1 19 0.00041 34.4 5.3 81 61-146 494-589 (625)
381 PF00498 FHA: FHA domain; Int 58.4 5.2 0.00011 26.0 1.0 20 166-185 46-67 (68)
382 cd00754 MoaD Ubiquitin domain 58.2 9 0.0002 25.7 2.2 58 114-187 18-75 (80)
383 cd01896 DRG The developmentall 56.9 89 0.0019 25.7 8.4 86 59-144 74-186 (233)
384 COG1188 Ribosome-associated he 56.7 6.7 0.00015 28.8 1.4 24 163-186 35-58 (100)
385 KOG1143|consensus 56.7 77 0.0017 29.2 8.3 17 85-101 302-318 (591)
386 COG2914 Uncharacterized protei 56.2 8.7 0.00019 28.0 1.9 19 168-186 56-74 (99)
387 PRK05863 sulfur carrier protei 53.7 9.1 0.0002 25.3 1.6 13 175-187 48-60 (65)
388 COG0480 FusA Translation elong 53.4 13 0.00027 36.3 3.1 25 74-100 118-142 (697)
389 COG1149 MinD superfamily P-loo 51.2 31 0.00068 29.9 4.8 49 58-107 181-234 (284)
390 PRK08053 sulfur carrier protei 50.9 13 0.00027 24.6 1.9 16 172-187 46-61 (66)
391 PRK06083 sulfur carrier protei 50.0 13 0.00027 26.3 1.9 17 171-187 63-79 (84)
392 COG0024 Map Methionine aminope 49.6 42 0.00091 28.6 5.3 61 120-185 34-95 (255)
393 KOG0463|consensus 49.1 66 0.0014 29.6 6.7 74 85-159 272-380 (641)
394 KOG1769|consensus 46.8 16 0.00035 26.8 2.1 22 166-187 65-91 (99)
395 cd04169 RF3 RF3 subfamily. Pe 45.7 17 0.00037 30.8 2.4 25 112-136 241-265 (267)
396 TIGR02988 YaaA_near_RecF S4 do 44.8 19 0.0004 23.1 2.0 23 163-185 35-58 (59)
397 KOG0074|consensus 44.2 18 0.00039 28.7 2.1 74 60-133 83-176 (185)
398 TIGR01682 moaD molybdopterin c 43.5 20 0.00043 24.4 2.1 48 122-186 27-74 (80)
399 COG5509 Uncharacterized small 42.9 31 0.00068 23.0 2.8 20 3-22 30-49 (65)
400 PF04670 Gtr1_RagA: Gtr1/RagA 42.2 42 0.0009 28.1 4.2 43 60-102 74-127 (232)
401 PF02597 ThiS: ThiS family; I 41.9 17 0.00036 24.1 1.5 57 116-187 16-72 (77)
402 PRK09866 hypothetical protein; 41.3 34 0.00073 33.4 3.8 30 2-37 50-79 (741)
403 PRK13505 formate--tetrahydrofo 40.7 54 0.0012 31.2 5.0 51 85-136 371-429 (557)
404 cd01886 EF-G Elongation factor 38.3 26 0.00056 29.8 2.4 25 112-136 244-268 (270)
405 KOG0459|consensus 36.5 48 0.001 30.6 3.9 74 86-159 217-312 (501)
406 PF09919 DUF2149: Uncharacteri 36.2 72 0.0016 22.9 4.1 19 167-185 72-90 (92)
407 cd03114 ArgK-like The function 35.1 43 0.00093 25.6 3.0 9 89-97 140-148 (148)
408 PF09006 Surfac_D-trimer: Lung 35.1 85 0.0019 19.8 3.7 33 2-34 3-38 (46)
409 PF09278 MerR-DNA-bind: MerR, 35.0 46 0.00099 21.4 2.7 24 3-26 41-64 (65)
410 PF06696 Strep_SA_rep: Strepto 34.8 51 0.0011 18.1 2.4 17 5-21 5-21 (25)
411 TIGR02475 CobW cobalamin biosy 34.0 35 0.00077 30.0 2.6 17 89-105 176-192 (341)
412 KOG3349|consensus 30.7 48 0.001 26.5 2.6 36 60-101 78-114 (170)
413 COG5417 Uncharacterized small 30.6 30 0.00064 24.2 1.2 52 124-186 29-81 (81)
414 PF03452 Anp1: Anp1; InterPro 30.1 3.4E+02 0.0073 23.4 7.9 74 7-80 73-164 (269)
415 PRK10416 signal recognition pa 30.0 1.9E+02 0.0041 25.2 6.5 40 87-128 260-302 (318)
416 PRK11130 moaD molybdopterin sy 29.4 49 0.0011 22.6 2.2 18 169-186 58-75 (81)
417 COG0391 Uncharacterized conser 29.1 79 0.0017 28.0 4.0 40 59-100 186-235 (323)
418 PF01479 S4: S4 domain; Inter 28.9 25 0.00055 21.3 0.6 21 163-183 27-48 (48)
419 TIGR00503 prfC peptide chain r 28.5 53 0.0011 30.8 2.9 27 112-138 251-277 (527)
420 PF03193 DUF258: Protein of un 28.3 58 0.0013 25.7 2.7 23 112-134 36-58 (161)
421 KOG2776|consensus 27.5 44 0.00095 30.1 2.1 34 151-186 79-112 (398)
422 PF05377 FlaC_arch: Flagella a 27.4 42 0.00091 22.0 1.5 21 6-26 1-21 (55)
423 smart00363 S4 S4 RNA-binding d 27.1 52 0.0011 19.6 1.9 23 164-186 28-51 (60)
424 PF11471 Sugarporin_N: Maltopo 27.0 80 0.0017 20.9 2.8 18 2-19 29-46 (60)
425 KOG0077|consensus 26.8 71 0.0015 26.0 3.0 16 85-100 120-135 (193)
426 PRK14907 rplD 50S ribosomal pr 26.6 4.4E+02 0.0095 23.1 8.8 87 30-128 175-275 (295)
427 PF12001 DUF3496: Domain of un 26.2 52 0.0011 24.6 2.0 14 5-18 7-20 (111)
428 PRK00295 hypothetical protein; 26.2 80 0.0017 21.2 2.8 19 1-19 1-19 (68)
429 KOG3883|consensus 25.7 1.3E+02 0.0027 24.4 4.1 52 84-135 116-174 (198)
430 KOG0448|consensus 25.5 1.9E+02 0.0042 28.4 6.0 15 86-100 260-275 (749)
431 PF01166 TSC22: TSC-22/dip/bun 25.5 96 0.0021 20.6 2.9 24 3-26 19-42 (59)
432 cd01763 Sumo Small ubiquitin-r 25.1 43 0.00093 23.3 1.3 60 113-187 23-82 (87)
433 PF05014 Nuc_deoxyrib_tr: Nucl 23.6 2.6E+02 0.0057 19.8 5.4 40 59-98 58-101 (113)
434 PF14478 DUF4430: Domain of un 23.4 45 0.00097 22.1 1.1 13 173-185 55-67 (68)
435 cd03110 Fer4_NifH_child This p 23.1 1.2E+02 0.0025 23.3 3.6 58 28-100 93-157 (179)
436 COG4108 PrfC Peptide chain rel 22.6 1.4E+02 0.003 28.0 4.3 17 85-101 132-148 (528)
437 PF04420 CHD5: CHD5-like prote 22.4 96 0.0021 24.3 3.0 24 3-26 71-94 (161)
438 PF05308 Mito_fiss_reg: Mitoch 22.4 72 0.0016 27.2 2.4 18 3-20 120-137 (253)
439 PF05061 Pox_A11: Poxvirus A11 22.1 78 0.0017 27.7 2.5 22 5-26 147-168 (314)
440 COG4232 Thiol:disulfide interc 22.1 1.8E+02 0.0039 27.8 5.1 68 18-95 466-543 (569)
441 KOG3478|consensus 22.0 97 0.0021 23.3 2.7 19 2-20 73-91 (120)
442 PF10948 DUF2635: Protein of u 21.5 55 0.0012 20.6 1.1 11 176-186 34-44 (47)
443 PF02492 cobW: CobW/HypB/UreG, 21.5 35 0.00076 26.7 0.3 13 90-102 145-157 (178)
444 PF11305 DUF3107: Protein of u 20.9 3E+02 0.0064 19.0 5.0 44 120-172 18-71 (74)
445 KOG1673|consensus 20.8 4.6E+02 0.0099 21.2 7.5 47 86-133 125-183 (205)
446 PF10087 DUF2325: Uncharacteri 20.7 1.5E+02 0.0032 20.8 3.5 35 58-92 44-81 (97)
447 cd01667 TGS_ThrRS_N TGS _ThrRS 20.5 76 0.0016 19.0 1.7 22 166-187 39-60 (61)
No 1
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=3.2e-47 Score=326.19 Aligned_cols=146 Identities=48% Similarity=0.746 Sum_probs=135.1
Q ss_pred chhhHHHHHHhhhhhcccceeeEEEEecCCchHHHHHHHhcCCCCcEEEEEecCCCCChHHHHHHhcCCCEEEEeccccc
Q psy7063 43 YYYKSARAYEADTLPSKLTLKNVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKL 122 (188)
Q Consensus 43 l~~~~~~a~~~~~~~~~i~~ADvvl~~D~s~dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~l~~~~~~vpISA~~~~ 122 (188)
+-|--...-+..+.+|+|++|||.+..|+|.||+++.+..++.|+|+|+|+||+|+.+.++++.+.+.++.+++||+.++
T Consensus 196 l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~~~v~isa~~~~ 275 (365)
T COG1163 196 LTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKPNSVPISAKKGI 275 (365)
T ss_pred cccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhccceEEEecccCC
Confidence 33334445567788899999999999999999999999999999999999999999998888878766789999999999
Q ss_pred cHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccC------------------------CCCCCCCCcccCCCcccc
Q psy7063 123 NLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG------------------------GTSTKYSPQRVGLAHVMA 178 (188)
Q Consensus 123 gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~g------------------------g~~~k~~~qrvg~d~~L~ 178 (188)
|+++|++.||+.|+++|||||+||..||+++|++|++| |+|+||+|||||+||+|+
T Consensus 276 nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~~IH~~l~~~FryA~VWGkSvk~~~QrVG~dHvLe 355 (365)
T COG1163 276 NLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRGSTVGDVCRKIHRDLVENFRYARVWGKSVKHPGQRVGLDHVLE 355 (365)
T ss_pred CHHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhcceEEEeccCCCCCccccCcCcCcc
Confidence 99999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCeEEEeeC
Q psy7063 179 DEDVIQIVKK 188 (188)
Q Consensus 179 d~Dvv~iv~~ 188 (188)
|||||+|+.|
T Consensus 356 D~DIV~I~~k 365 (365)
T COG1163 356 DEDIVEIHAK 365 (365)
T ss_pred CCCeEEEeeC
Confidence 9999999975
No 2
>KOG1486|consensus
Probab=100.00 E-value=3.2e-43 Score=293.66 Aligned_cols=137 Identities=68% Similarity=1.065 Sum_probs=130.6
Q ss_pred HhhhhhcccceeeEEEEecCCchHHHHHHHhcCCCCcEEEEEecCCCCChHHHHHHhcCCCEEEEeccccccHHHHHHHH
Q psy7063 52 EADTLPSKLTLKNVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLNLDYLLDII 131 (188)
Q Consensus 52 ~~~~~~~~i~~ADvvl~~D~s~dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~l~~~~~~vpISA~~~~gld~L~~~I 131 (188)
+..+-+|+|.+|+|++..|+|.||+++.+.+++.|.||++|.||+|..+-++++++.+.++.+.||+.-.+|++.|++.|
T Consensus 204 ~~ILheykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdrlAr~PnsvViSC~m~lnld~lle~i 283 (364)
T KOG1486|consen 204 YTILHEYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDRLARQPNSVVISCNMKLNLDRLLERI 283 (364)
T ss_pred HHHHHHHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHHHhcCCCcEEEEeccccCHHHHHHHH
Confidence 44556799999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred HHhcccceeeeCCCCCCCCCCCcEEeccC------------------------CCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 132 WLYLSLIRVYTKKPGAPPDFDDGLILRKG------------------------GTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 132 ~~~L~~irVY~k~~g~~~d~~~p~il~~g------------------------g~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
|+.|++.|||||++|..||+.+|++++.| |.|+||+|||||..|.++|+|||+|+.
T Consensus 284 We~l~L~rvYtKk~g~~Pdfdd~~vlr~g~tve~~C~~iHr~l~~qfkyAlVWGtSakhsPQrvgl~h~~~dEdvvqi~~ 363 (364)
T KOG1486|consen 284 WEELNLVRVYTKKKGQRPDFDDPLVLRKGSTVEDVCHRIHRTLAAQFKYALVWGTSAKHSPQRVGLGHTLEDEDVVQIVK 363 (364)
T ss_pred HHHhceEEEEecCCCCCCCCCCceEEeCCCcHHHHHHHHHHHHHHhhceeeEeccccccCcceeccccccccccceeeec
Confidence 99999999999999999999999999999 889999999999999999999999986
Q ss_pred C
Q psy7063 188 K 188 (188)
Q Consensus 188 ~ 188 (188)
+
T Consensus 364 k 364 (364)
T KOG1486|consen 364 K 364 (364)
T ss_pred C
Confidence 5
No 3
>KOG1487|consensus
Probab=100.00 E-value=4.1e-39 Score=269.76 Aligned_cols=142 Identities=46% Similarity=0.776 Sum_probs=132.9
Q ss_pred HHHHHHhhhhhcccceeeEEEEecCCchHHHHHHHhcCCCCcEEEEEecCCCCChHHHHHHhcCCCEEEEeccccccHHH
Q psy7063 47 SARAYEADTLPSKLTLKNVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLNLDY 126 (188)
Q Consensus 47 ~~~a~~~~~~~~~i~~ADvvl~~D~s~dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~l~~~~~~vpISA~~~~gld~ 126 (188)
-+...++.+++|.+.+||+.+..|+|.||+++.++.++.|.|+++++||+|..+-|+++.++..++.+||||.++||+|+
T Consensus 192 dlD~~rsil~eyR~hsAdi~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdii~~iphavpISA~~~wn~d~ 271 (358)
T KOG1487|consen 192 DLDLQRSILSEYRIHSADIALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDIIYTIPHAVPISAHTGWNFDK 271 (358)
T ss_pred hHHHHHHHHHHhhhcchheeeecCcchhhhhhhhccCceeeeeeeeecccceeeeeccceeeeccceeecccccccchHH
Confidence 34566788899999999999999999999999999999999999999999998888777666678899999999999999
Q ss_pred HHHHHHHhcccceeeeCCCCCCCCCCCcEEeccC-------------------------CCCCCCCCcccCCCccccCCC
Q psy7063 127 LLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG-------------------------GTSTKYSPQRVGLAHVMADED 181 (188)
Q Consensus 127 L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~g-------------------------g~~~k~~~qrvg~d~~L~d~D 181 (188)
|++.+|++|+++|+||+++|..||+..|++++.+ |.|+||+|||||++|+|+|+|
T Consensus 272 lL~~mweyL~LvriYtkPKgq~PDy~~pVvLs~~~~sv~dfc~~ih~~~~~~fk~alvwg~s~kh~pq~vg~~h~l~ded 351 (358)
T KOG1487|consen 272 LLEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSSERRSVEDFCNKIHKSILKQFKYALVWGSSVKHNPQRVGKEHVLEDED 351 (358)
T ss_pred HHHHHhhcchheEEecCCCCCCCCCCCCceecCCcccHHHHHHHHHHHHHHhhhhheEeccccCcChhhcchhheeccch
Confidence 9999999999999999999999999999999998 889999999999999999999
Q ss_pred eEEEeeC
Q psy7063 182 VIQIVKK 188 (188)
Q Consensus 182 vv~iv~~ 188 (188)
||+||.+
T Consensus 352 vv~ivkk 358 (358)
T KOG1487|consen 352 VVQIVKK 358 (358)
T ss_pred hhhhccC
Confidence 9999975
No 4
>COG2262 HflX GTPases [General function prediction only]
Probab=99.83 E-value=6e-20 Score=162.22 Aligned_cols=133 Identities=24% Similarity=0.327 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcc------cceeEEEccCC---c--cch-----------------------------
Q psy7063 2 GILEKISEIEKEIARTQKNKVLAYC------WSKGTFQSYTS---S--INR----------------------------- 41 (188)
Q Consensus 2 ~i~~~i~~~e~e~~~~~~~~~~~~~------~~~~~~~~~~~---~--ln~----------------------------- 41 (188)
-|++||+.|++|++++++.|+++|. +|.++|+|||| | +|.
T Consensus 161 ~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~ 240 (411)
T COG2262 161 RIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGR 240 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCc
Confidence 4899999999999999999999998 99999999997 2 886
Q ss_pred ------------hchhhHHHHHHhhhhhcccceeeEEE-EecCCchHHHHHHHh--------cCCCCcEEEEEecCCCCC
Q psy7063 42 ------------HYYYKSARAYEADTLPSKLTLKNVLF-REDCNADELIDVINA--------NRVYLPCIYAYNKIDQIS 100 (188)
Q Consensus 42 ------------~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~dd~~~~l~~--------~~~~kP~IlV~NKiDl~~ 100 (188)
.|||.++.||++|+++ +.+||+++ ++|+|+++..+++.. ....+|+|+|+||+|+..
T Consensus 241 ~vlLtDTVGFI~~LP~~LV~AFksTLEE--~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~ 318 (411)
T COG2262 241 KVLLTDTVGFIRDLPHPLVEAFKSTLEE--VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLE 318 (411)
T ss_pred eEEEecCccCcccCChHHHHHHHHHHHH--hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccC
Confidence 8999999999999999 89999999 999998776655432 124699999999999886
Q ss_pred hHH-HHHHhc-CCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 101 IEE-VDRIAR-QPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 101 ~e~-l~~l~~-~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
.+. +..+.. .+..|+|||++|.|++.|++.|.+.+.
T Consensus 319 ~~~~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 319 DEEILAELERGSPNPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred chhhhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhh
Confidence 543 333332 235899999999999999999999987
No 5
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.78 E-value=1.8e-19 Score=125.91 Aligned_cols=51 Identities=71% Similarity=1.112 Sum_probs=48.8
Q ss_pred cceeeeCCCCCCCCCCCcEEeccC------------------------CCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 137 LIRVYTKKPGAPPDFDDGLILRKG------------------------GTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 137 ~irVY~k~~g~~~d~~~p~il~~g------------------------g~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
+||||||++|+.||+++|++||+| |+|++|.|||||+||+|+|||||+|++
T Consensus 1 lirvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 1 LIRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred CEEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 589999999999999999999999 779999999999999999999999985
No 6
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.70 E-value=1.1e-16 Score=143.06 Aligned_cols=118 Identities=24% Similarity=0.374 Sum_probs=88.9
Q ss_pred ecCCchHHHHHHHhc-CCCCcEEEEEecCCCCC-hHHHHHHh--cCCCEEEEeccccccHHH------------------
Q psy7063 69 EDCNADELIDVINAN-RVYLPCIYAYNKIDQIS-IEEVDRIA--RQPNSVVVSCNMKLNLDY------------------ 126 (188)
Q Consensus 69 ~D~s~dd~~~~l~~~-~~~kP~IlV~NKiDl~~-~e~l~~l~--~~~~~vpISA~~~~gld~------------------ 126 (188)
.+|+.+++.+..... ...+|+|+|+||+|... .+.+..+. .+.+++|+||+.+.+++.
T Consensus 199 ~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~ 278 (396)
T PRK09602 199 SKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEI 278 (396)
T ss_pred cCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCc
Confidence 356666654443322 34699999999999864 33343333 346799999999998765
Q ss_pred ------------------------------HHHHHHHhcccceeeeCCCCCC------CCCCCcEEeccC----------
Q psy7063 127 ------------------------------LLDIIWLYLSLIRVYTKKPGAP------PDFDDGLILRKG---------- 160 (188)
Q Consensus 127 ------------------------------L~~~I~~~L~~irVY~k~~g~~------~d~~~p~il~~g---------- 160 (188)
|.+++|+.|+++++||..++.. +++++|+++|+|
T Consensus 279 ~d~ltd~~~r~~E~IRk~l~~~g~~~~~~~i~~~~~~~L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~~d~A~~I 358 (396)
T PRK09602 279 LGELSEKQKKALEYIREVLKKYGGTGVQEAINTAVFDLLDMIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTARDLAYKI 358 (396)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhCCEEEEecCcccccccccCcccceeEEECCCCCHHHHHHHH
Confidence 4488999999999999543211 369999999999
Q ss_pred ----------CCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 161 ----------GTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 161 ----------g~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
..+++ .+|++|+||+|+|||||+|++
T Consensus 359 H~d~~~~fi~A~~~~-~~~~~g~~~~l~dgDiv~i~~ 394 (396)
T PRK09602 359 HTDIGEGFLYAIDAR-TKRRIGEDYELKDGDVIKIVS 394 (396)
T ss_pred HHHHHhhceehhccc-CCcccCCCcEecCCCEEEEEe
Confidence 23677 899999999999999999986
No 7
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.69 E-value=1e-16 Score=133.53 Aligned_cols=95 Identities=58% Similarity=0.863 Sum_probs=83.9
Q ss_pred HHHHhhhhhcccceeeEEEEecCCchHHHHHHHhcCCCCcEEEEEecCCCCChHHHHHHhcCCCEEEEeccccccHHHHH
Q psy7063 49 RAYEADTLPSKLTLKNVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLNLDYLL 128 (188)
Q Consensus 49 ~a~~~~~~~~~i~~ADvvl~~D~s~dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~l~~~~~~vpISA~~~~gld~L~ 128 (188)
..-+..+.+++|++|+|.+..|+|.||+++.+.+++.|+|+++|+||+|+.+.++...+...++.+++||+++.|+++|.
T Consensus 139 ~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 218 (233)
T cd01896 139 KTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLARQPNSVVISAEKGLNLDELK 218 (233)
T ss_pred HHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHH
Confidence 33345566799999999999999999999999998999999999999999877766655544568999999999999999
Q ss_pred HHHHHhcccceeeeC
Q psy7063 129 DIIWLYLSLIRVYTK 143 (188)
Q Consensus 129 ~~I~~~L~~irVY~k 143 (188)
+.||+.|++||||||
T Consensus 219 ~~i~~~L~~irvy~k 233 (233)
T cd01896 219 ERIWDKLGLIRVYTK 233 (233)
T ss_pred HHHHHHhCcEEEecC
Confidence 999999999999997
No 8
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.53 E-value=1.7e-13 Score=120.70 Aligned_cols=131 Identities=24% Similarity=0.327 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcc------cceeEEEccCC----c-cch------------------------------
Q psy7063 3 ILEKISEIEKEIARTQKNKVLAYC------WSKGTFQSYTS----S-INR------------------------------ 41 (188)
Q Consensus 3 i~~~i~~~e~e~~~~~~~~~~~~~------~~~~~~~~~~~----~-ln~------------------------------ 41 (188)
|++||+.|.+|++++.++|.+.|. .++++|+|||| + +|+
T Consensus 159 i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~ 238 (351)
T TIGR03156 159 IRERIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGE 238 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCce
Confidence 789999999999999999888765 68899999996 2 665
Q ss_pred -----------hchhhHHHHHHhhhhhcccceeeEEE-EecCCchHHH-------HHHHhcC-CCCcEEEEEecCCCCCh
Q psy7063 42 -----------HYYYKSARAYEADTLPSKLTLKNVLF-REDCNADELI-------DVINANR-VYLPCIYAYNKIDQISI 101 (188)
Q Consensus 42 -----------~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~dd~~-------~~l~~~~-~~kP~IlV~NKiDl~~~ 101 (188)
.+++....+|..++.+ +.+||+++ ++|++.++.. +.+.... ..+|+++|+||+|+.+.
T Consensus 239 i~l~DT~G~~~~l~~~lie~f~~tle~--~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 239 VLLTDTVGFIRDLPHELVAAFRATLEE--VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE 316 (351)
T ss_pred EEEEecCcccccCCHHHHHHHHHHHHH--HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh
Confidence 2467777888888776 89999998 8998743211 2232222 36899999999999765
Q ss_pred HHHHHHh-cCCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 102 EEVDRIA-RQPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 102 e~l~~l~-~~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
+.+..+. .+.+++++||++|.|+++|.+.|.+.+
T Consensus 317 ~~v~~~~~~~~~~i~iSAktg~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 317 PRIERLEEGYPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred HhHHHHHhCCCCEEEEEccCCCCHHHHHHHHHhhC
Confidence 4443332 224589999999999999999987653
No 9
>PRK11058 GTPase HflX; Provisional
Probab=99.38 E-value=1e-11 Score=112.11 Aligned_cols=133 Identities=20% Similarity=0.236 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcc------cceeEEEccCC----c-cch-----------------------------
Q psy7063 2 GILEKISEIEKEIARTQKNKVLAYC------WSKGTFQSYTS----S-INR----------------------------- 41 (188)
Q Consensus 2 ~i~~~i~~~e~e~~~~~~~~~~~~~------~~~~~~~~~~~----~-ln~----------------------------- 41 (188)
.|++||+.+.++++++.+.|.+.|. +|.++|+|||| + +|+
T Consensus 166 ~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~ 245 (426)
T PRK11058 166 LLRNRIVQILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG 245 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC
Confidence 3789999999999999998887763 68999999997 2 665
Q ss_pred ------------hchhhHHHHHHhhhhhcccceeeEEE-EecCCchHHH-------HHHHhc-CCCCcEEEEEecCCCCC
Q psy7063 42 ------------HYYYKSARAYEADTLPSKLTLKNVLF-REDCNADELI-------DVINAN-RVYLPCIYAYNKIDQIS 100 (188)
Q Consensus 42 ------------~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~dd~~-------~~l~~~-~~~kP~IlV~NKiDl~~ 100 (188)
.++++.+.+|..++.+ +.+||+++ ++|++..+.. +.+... ...+|+++|+||+|+.+
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~--~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQE--TRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHH--hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 3477888888888776 78999998 8998754321 122222 23689999999999874
Q ss_pred hH--HHHHHh-cCCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 101 IE--EVDRIA-RQPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 101 ~e--~l~~l~-~~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
.. .+.... ..+..+++||++|.|+++|.+.|.+.+.
T Consensus 324 ~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 324 DFEPRIDRDEENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred chhHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 32 122111 2233588999999999999999998874
No 10
>PTZ00258 GTP-binding protein; Provisional
Probab=99.37 E-value=2.2e-12 Score=115.10 Aligned_cols=113 Identities=23% Similarity=0.265 Sum_probs=83.0
Q ss_pred ecCCchHHHHHHH-hcCCCCcEEEEEecC--CCC--ChHHHHHHh----cC--CCEEEEeccccc---------------
Q psy7063 69 EDCNADELIDVIN-ANRVYLPCIYAYNKI--DQI--SIEEVDRIA----RQ--PNSVVVSCNMKL--------------- 122 (188)
Q Consensus 69 ~D~s~dd~~~~l~-~~~~~kP~IlV~NKi--Dl~--~~e~l~~l~----~~--~~~vpISA~~~~--------------- 122 (188)
.+|+.++....-. .....||+|+|+||. |+. +.+.++.+. .. ..++++||+.+.
T Consensus 202 ~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~el~~l~~~~e~~~fl 281 (390)
T PTZ00258 202 GDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEEELAELGSEEERKEYL 281 (390)
T ss_pred CCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHHHHHhcCCHHHHHHHH
Confidence 3666655322211 123579999999999 862 333343332 11 348999997664
Q ss_pred --------cHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccC--------------------------------CC
Q psy7063 123 --------NLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG--------------------------------GT 162 (188)
Q Consensus 123 --------gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~g--------------------------------g~ 162 (188)
|++.|.+..++.|++|++||..|. -.+|+++++| |.
T Consensus 282 ~~~g~~~~gl~~li~~~~~lL~li~ffT~g~~----e~raw~i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~ 357 (390)
T PTZ00258 282 EEYGIKQSMLDKIIKTGYKLLNLIHFFTAGPD----EVRCWTIQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGS 357 (390)
T ss_pred HHcCCCcccHHHHHHHHHHHhCCEEEEcCCCC----ceeEEEeCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCC
Confidence 889999999999999999998763 4589999999 10
Q ss_pred --CCCCCC--cccCCCccccCCCeEEE
Q psy7063 163 --STKYSP--QRVGLAHVMADEDVIQI 185 (188)
Q Consensus 163 --~~k~~~--qrvg~d~~L~d~Dvv~i 185 (188)
.||..| +++|+||+|+|||||++
T Consensus 358 ~~~ak~~g~~r~eGkdYiv~DGDIi~f 384 (390)
T PTZ00258 358 EAAVKAEGKYRQEGKDYVVQDGDIIFF 384 (390)
T ss_pred HHHHHhcCceeeeCCceEecCCCEEEE
Confidence 266667 89999999999999998
No 11
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.28 E-value=2.7e-12 Score=89.87 Aligned_cols=49 Identities=22% Similarity=0.401 Sum_probs=41.8
Q ss_pred cceeeeCCCCCC-------CCCCCcEEeccC--------------------CCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 137 LIRVYTKKPGAP-------PDFDDGLILRKG--------------------GTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 137 ~irVY~k~~g~~-------~d~~~p~il~~g--------------------g~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
++||||+++|+. ||+++|++|++| +...+ +||+|+||+|+|||||+|++
T Consensus 1 li~VYpv~~~~~~~~~~~g~d~~~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~--~~~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 1 LIPVYPVKNIHTFTNGSGGNVFRDCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGR--RRLEGKDVILGKNDILKFKT 76 (76)
T ss_pred CEEEEEcCCCccccCcCCCCccceeEEEcCCCCHHHHHHHHhHHHHhccEEEEEcc--CEEECCCEEecCCCEEEEEC
Confidence 589999998887 899999999999 11111 79999999999999999974
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.27 E-value=2.9e-11 Score=108.62 Aligned_cols=127 Identities=19% Similarity=0.223 Sum_probs=84.8
Q ss_pred hHHHHHHhhhhhcccceeeEEE-EecCC----chH--HHHHHHhcCCCCcEEEEEecCCCCChHH-HHHHh--cCCCEEE
Q psy7063 46 KSARAYEADTLPSKLTLKNVLF-REDCN----ADE--LIDVINANRVYLPCIYAYNKIDQISIEE-VDRIA--RQPNSVV 115 (188)
Q Consensus 46 ~~~~a~~~~~~~~~i~~ADvvl-~~D~s----~dd--~~~~l~~~~~~kP~IlV~NKiDl~~~e~-l~~l~--~~~~~vp 115 (188)
+-+++.|...++.++.+||++| ++|.. .+| +.+.+. +..+|+|+|+||+|....+. ..+++ .+.+.+|
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr--~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ 144 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR--RSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVP 144 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH--hcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceE
Confidence 4567777777778999999998 88853 233 334442 45699999999999874443 44454 3578999
Q ss_pred EeccccccHHHHHHHHHHhcccceeeeCCCCC-CCCCCCcEEeccC-CCCCCCCCcccCCCccc
Q psy7063 116 VSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGA-PPDFDDGLILRKG-GTSTKYSPQRVGLAHVM 177 (188)
Q Consensus 116 ISA~~~~gld~L~~~I~~~L~~irVY~k~~g~-~~d~~~p~il~~g-g~~~k~~~qrvg~d~~L 177 (188)
|||.+|.|+.+|++++.+.|+ .-.-....+. .| ..=+++-+.+ |||.. -+.=+|.+..+
T Consensus 145 ISA~Hg~Gi~dLld~v~~~l~-~~e~~~~~~~~~~-ikiaiiGrPNvGKSsL-iN~ilgeeR~I 205 (444)
T COG1160 145 ISAEHGRGIGDLLDAVLELLP-PDEEEEEEEETDP-IKIAIIGRPNVGKSSL-INAILGEERVI 205 (444)
T ss_pred eehhhccCHHHHHHHHHhhcC-CcccccccccCCc-eEEEEEeCCCCCchHH-HHHhccCceEE
Confidence 999999999999999999985 3332222222 11 3336676666 66543 33334444443
No 13
>COG1159 Era GTPase [General function prediction only]
Probab=99.25 E-value=3.5e-11 Score=103.13 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=80.1
Q ss_pred eeEEEccCC------ccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCc----hH--HHHHHHhcCCCCcEEEEEec
Q psy7063 29 KGTFQSYTS------SINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNA----DE--LIDVINANRVYLPCIYAYNK 95 (188)
Q Consensus 29 ~~~~~~~~~------~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~----dd--~~~~l~~~~~~kP~IlV~NK 95 (188)
|+.|++.|+ +||+.|+++++ .++.+||+++ ++|++. +| +.+.+.. ...|+|+++||
T Consensus 55 QiIfvDTPGih~pk~~l~~~m~~~a~---------~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNK 123 (298)
T COG1159 55 QIIFVDTPGIHKPKHALGELMNKAAR---------SALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNK 123 (298)
T ss_pred eEEEEeCCCCCCcchHHHHHHHHHHH---------HHhccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEc
Confidence 355666664 47888888877 6799999998 787652 22 2233322 35799999999
Q ss_pred CCCCChHH-HHHH-------hcCCCEEEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEe
Q psy7063 96 IDQISIEE-VDRI-------ARQPNSVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLIL 157 (188)
Q Consensus 96 iDl~~~e~-l~~l-------~~~~~~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il 157 (188)
+|....+. +..+ .+|.+++||||++|.|++.|.+.+.++|+.-.-|- ++....|.|+-|+.
T Consensus 124 ID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~y-p~d~itD~~~rf~~ 192 (298)
T COG1159 124 IDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYY-PEDQITDRPERFLA 192 (298)
T ss_pred cccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcC-ChhhccCChHHHHH
Confidence 99886544 3212 14668999999999999999999999998554332 22333444444444
No 14
>KOG0410|consensus
Probab=99.12 E-value=2.2e-10 Score=99.51 Aligned_cols=129 Identities=19% Similarity=0.140 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhh--hc---ccceeEEEccCCc-----cch-------------------------------
Q psy7063 3 ILEKISEIEKEIARTQKNKVL--AY---CWSKGTFQSYTSS-----INR------------------------------- 41 (188)
Q Consensus 3 i~~~i~~~e~e~~~~~~~~~~--~~---~~~~~~~~~~~~~-----ln~------------------------------- 41 (188)
.|.|++.|.+|+.++.|.|-. .| ..|.|+++||||+ +|+
T Consensus 149 lr~kea~lrKeL~~vrrkr~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~v 228 (410)
T KOG0410|consen 149 LRIKEAQLRKELQRVRRKRQRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFV 228 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEE
Confidence 477899999999999988822 11 1888999999972 443
Q ss_pred ----------hchhhHHHHHHhhhhhcccceeeEEE-EecCCchHHHHHHH-------hcCC-CCc----EEEEEecCCC
Q psy7063 42 ----------HYYYKSARAYEADTLPSKLTLKNVLF-REDCNADELIDVIN-------ANRV-YLP----CIYAYNKIDQ 98 (188)
Q Consensus 42 ----------~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~dd~~~~l~-------~~~~-~kP----~IlV~NKiDl 98 (188)
.||++++.||.+++++ +.+||+++ +.|+|.++.+.+.. .... +.| ++=|-||+|.
T Consensus 229 lltDTvGFisdLP~~LvaAF~ATLee--VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~ 306 (410)
T KOG0410|consen 229 LLTDTVGFISDLPIQLVAAFQATLEE--VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDY 306 (410)
T ss_pred EEeechhhhhhCcHHHHHHHHHHHHH--HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccc
Confidence 7999999999999999 99999999 99999765544432 1111 233 4557777776
Q ss_pred CChHHHHHHhcCCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 99 ISIEEVDRIARQPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 99 ~~~e~l~~l~~~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
.+.+ .+ .+....++|||.+|.|+++|+.++-..+.
T Consensus 307 e~~~-~e--~E~n~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 307 EEDE-VE--EEKNLDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cccc-Cc--cccCCccccccccCccHHHHHHHHHHHhh
Confidence 4321 11 01113799999999999999998887654
No 15
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.07 E-value=5.3e-09 Score=84.11 Aligned_cols=131 Identities=23% Similarity=0.327 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcc------cceeEEEccCCc-----cchhchh--------------------------
Q psy7063 3 ILEKISEIEKEIARTQKNKVLAYC------WSKGTFQSYTSS-----INRHYYY-------------------------- 45 (188)
Q Consensus 3 i~~~i~~~e~e~~~~~~~~~~~~~------~~~~~~~~~~~~-----ln~~l~~-------------------------- 45 (188)
+++||+.+.+|+......|...+. ++++++.|++++ +|+....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 90 (204)
T cd01878 11 IRERIAKLRRELEKVKKQRELQRRRRKRSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGRE 90 (204)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCce
Confidence 678999999999888777666655 577889988851 5542211
Q ss_pred ---------------hHHHHHHhhhhhcccceeeEEE-EecCCchH----H---HHHHHhcC-CCCcEEEEEecCCCCCh
Q psy7063 46 ---------------KSARAYEADTLPSKLTLKNVLF-REDCNADE----L---IDVINANR-VYLPCIYAYNKIDQISI 101 (188)
Q Consensus 46 ---------------~~~~a~~~~~~~~~i~~ADvvl-~~D~s~dd----~---~~~l~~~~-~~kP~IlV~NKiDl~~~ 101 (188)
.....+...+. .+.++|+++ ++|++... . .+.+.... ..+|+++|+||+|+.+.
T Consensus 91 ~~i~Dt~G~~~~~~~~~~~~~~~~~~--~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 91 VLLTDTVGFIRDLPHQLVEAFRSTLE--EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred EEEeCCCccccCCCHHHHHHHHHHHH--HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 11122222222 256889887 78876322 1 12222212 35899999999999765
Q ss_pred HHHHHH-h-cCCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 102 EEVDRI-A-RQPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 102 e~l~~l-~-~~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
...... . ...+++++||+++.|++++.+.|.+.|
T Consensus 169 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 169 EELEERLEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred HHHHHHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 433212 1 234589999999999999999987754
No 16
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.95 E-value=1e-08 Score=93.07 Aligned_cols=131 Identities=16% Similarity=0.093 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcc---cceeEEEccCC----c-cchhch-----------------------------
Q psy7063 2 GILEKISEIEKEIARTQKNKVLAYC---WSKGTFQSYTS----S-INRHYY----------------------------- 44 (188)
Q Consensus 2 ~i~~~i~~~e~e~~~~~~~~~~~~~---~~~~~~~~~~~----~-ln~~l~----------------------------- 44 (188)
.+++||..|++|++++.+++.+.+. -.+++++|++| + +|+...
T Consensus 187 ~i~~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~ 266 (449)
T PRK05291 187 KILEKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLR 266 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEE
Confidence 3789999999999999988876655 35688999886 1 565211
Q ss_pred ----------hhHHHH--HHhhhhhcccceeeEEE-EecCCch---HHHHHHHhcCCCCcEEEEEecCCCCChHHHHHHh
Q psy7063 45 ----------YKSARA--YEADTLPSKLTLKNVLF-REDCNAD---ELIDVINANRVYLPCIYAYNKIDQISIEEVDRIA 108 (188)
Q Consensus 45 ----------~~~~~a--~~~~~~~~~i~~ADvvl-~~D~s~d---d~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~l~ 108 (188)
+..+.+ +..++. .+.+||+++ ++|++.. +....+.. ...+|+++|+||+|+.+..... ..
T Consensus 267 l~DT~G~~~~~~~ie~~gi~~~~~--~~~~aD~il~VvD~s~~~s~~~~~~l~~-~~~~piiiV~NK~DL~~~~~~~-~~ 342 (449)
T PRK05291 267 LIDTAGIRETDDEVEKIGIERSRE--AIEEADLVLLVLDASEPLTEEDDEILEE-LKDKPVIVVLNKADLTGEIDLE-EE 342 (449)
T ss_pred EEeCCCCCCCccHHHHHHHHHHHH--HHHhCCEEEEEecCCCCCChhHHHHHHh-cCCCCcEEEEEhhhccccchhh-hc
Confidence 111111 112222 378899998 8888632 11222222 3468999999999997543322 11
Q ss_pred cCCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 109 RQPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 109 ~~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
....++++||++|.|+++|.+.|.+.+.
T Consensus 343 ~~~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 343 NGKPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred cCCceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 2235899999999999999999999875
No 17
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.91 E-value=1.5e-09 Score=75.95 Aligned_cols=48 Identities=38% Similarity=0.636 Sum_probs=39.5
Q ss_pred cceeee--------CCCCCCCCCCCcEEeccC--------------CC------CCCCCCcccCCCccccCCCeEEEee
Q psy7063 137 LIRVYT--------KKPGAPPDFDDGLILRKG--------------GT------STKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 137 ~irVY~--------k~~g~~~d~~~p~il~~g--------------g~------~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
++.||| +..|++ +++|++||+| |+ .+| .||++|+||+|+|||||+|++
T Consensus 1 ~~~v~pv~~~~~~~~~~~~~--~~d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 1 MIVVYPVEDENKLTDKEGNV--LPDAFLLPKGSTARDLAYAIHTDIGDGFLHAIDAR-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred CccEEecccCCcccCCCCCC--ccceEEECCCCCHHHHHHHHHHHHHhcceeeEEee-CCEEeCCCcEecCCCEEEEeC
Confidence 367888 344666 9999999999 33 257 899999999999999999986
No 18
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.83 E-value=3.2e-08 Score=83.83 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=66.0
Q ss_pred eeEEEccCCc------cchhchhhHHHHHHhhhhhcccceeeEEE-EecCCch---H--HHHHHHhcCCCCcEEEEEecC
Q psy7063 29 KGTFQSYTSS------INRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNAD---E--LIDVINANRVYLPCIYAYNKI 96 (188)
Q Consensus 29 ~~~~~~~~~~------ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~d---d--~~~~l~~~~~~kP~IlV~NKi 96 (188)
++.|++.|+- +++.|.+.++ ..+.+||+++ ++|++.. + +...+. ...+|+++|+||+
T Consensus 49 qii~vDTPG~~~~~~~l~~~~~~~~~---------~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~--~~~~p~ilV~NK~ 117 (270)
T TIGR00436 49 QIIFIDTPGFHEKKHSLNRLMMKEAR---------SAIGGVDLILFVVDSDQWNGDGEFVLTKLQ--NLKRPVVLTRNKL 117 (270)
T ss_pred EEEEEECcCCCCCcchHHHHHHHHHH---------HHHhhCCEEEEEEECCCCCchHHHHHHHHH--hcCCCEEEEEECe
Confidence 4567776652 3333433333 4578999998 8887621 1 222222 2468999999999
Q ss_pred CCCChHHH----HHHh---cCCCEEEEeccccccHHHHHHHHHHhccc
Q psy7063 97 DQISIEEV----DRIA---RQPNSVVVSCNMKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 97 Dl~~~e~l----~~l~---~~~~~vpISA~~~~gld~L~~~I~~~L~~ 137 (188)
|+...+.+ ..+. .+.+++++||++|.|+++|.+.|.+.++.
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 118 DNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred eCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 99754432 1221 34468999999999999999999998853
No 19
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.83 E-value=1.4e-08 Score=90.09 Aligned_cols=112 Identities=21% Similarity=0.357 Sum_probs=77.4
Q ss_pred ecCCchHHHHHHHh--cCCCCcEEEEEecCCC--C-ChHHHHHHh----c-CCCEEEEeccccc----------------
Q psy7063 69 EDCNADELIDVINA--NRVYLPCIYAYNKIDQ--I-SIEEVDRIA----R-QPNSVVVSCNMKL---------------- 122 (188)
Q Consensus 69 ~D~s~dd~~~~l~~--~~~~kP~IlV~NKiDl--~-~~e~l~~l~----~-~~~~vpISA~~~~---------------- 122 (188)
.+|+.++. ..+.. ....||+++|+|+.|. . +.+.++.+. . ...++|+||+.+.
T Consensus 181 ~~~~~~e~-~~l~~~~llt~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~E~el~~l~~ee~~~fl~~ 259 (364)
T PRK09601 181 LELTDEEE-KLLKSLQLLTAKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKIEAEIAELDDEEKAEFLEE 259 (364)
T ss_pred CCCCHHHH-HHHHHhcccccCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHHHHHHHcCCHHHHHHHHHH
Confidence 46776664 33322 2346999999999995 2 223333332 1 2348999984322
Q ss_pred ------cHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccC--------------------------------CC--
Q psy7063 123 ------NLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG--------------------------------GT-- 162 (188)
Q Consensus 123 ------gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~g--------------------------------g~-- 162 (188)
|++.+....++.|++|.+||-.+-++ ++.++++| |.
T Consensus 260 ~g~~~s~~~~ii~~~~~~L~li~fftvg~~ev----rawti~~GstA~~aAg~IHsD~~kgFI~AeVi~~~d~~~~g~~~ 335 (364)
T PRK09601 260 LGLEESGLDRLIRAGYELLGLITYFTAGPKEV----RAWTIKKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEA 335 (364)
T ss_pred cCCcchhHHHHHHHHHHHhCCEEEecCCCCeE----EEEEeCCCCchHHHhhcchhhHhhccEEEEEecHHHHHHcCCHH
Confidence 55678888999999999999765554 79999999 21
Q ss_pred CCCC-CCccc-CCCccccCCCeEEE
Q psy7063 163 STKY-SPQRV-GLAHVMADEDVIQI 185 (188)
Q Consensus 163 ~~k~-~~qrv-g~d~~L~d~Dvv~i 185 (188)
.||- ...|+ |+||+++|||||.|
T Consensus 336 ~ak~~gk~rleGkdY~v~DGDIi~f 360 (364)
T PRK09601 336 GAKEAGKVRLEGKDYIVQDGDVMHF 360 (364)
T ss_pred HHHHccceeccCCceEecCCCEEEE
Confidence 3443 23578 99999999999988
No 20
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.77 E-value=6.7e-08 Score=87.37 Aligned_cols=80 Identities=20% Similarity=0.160 Sum_probs=58.7
Q ss_pred ccceeeEEE-EecCCch---HHHHHHHhcCCCCcEEEEEecCCCCChHHHHHH--hcCCCEEEEeccccccHHHHHHHHH
Q psy7063 59 KLTLKNVLF-REDCNAD---ELIDVINANRVYLPCIYAYNKIDQISIEEVDRI--ARQPNSVVVSCNMKLNLDYLLDIIW 132 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d---d~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~l--~~~~~~vpISA~~~~gld~L~~~I~ 132 (188)
.+.+||++| +.|++.+ .....+......+|+++|+||+|+.++...... ......+++||++|.|++.|.++|.
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~ 372 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDALREAIK 372 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccchhhccCCCceEEEEecCccCHHHHHHHHH
Confidence 589999998 8898752 112223324567999999999999866443322 2222489999999999999999999
Q ss_pred Hhcccc
Q psy7063 133 LYLSLI 138 (188)
Q Consensus 133 ~~L~~i 138 (188)
+.+...
T Consensus 373 ~~~~~~ 378 (454)
T COG0486 373 QLFGKG 378 (454)
T ss_pred HHHhhc
Confidence 988744
No 21
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.72 E-value=5.3e-08 Score=75.72 Aligned_cols=79 Identities=15% Similarity=0.223 Sum_probs=56.2
Q ss_pred ccceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCCChHHHHH----Hhc-CC-CEEEEeccccccHH
Q psy7063 59 KLTLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQISIEEVDR----IAR-QP-NSVVVSCNMKLNLD 125 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~----l~~-~~-~~vpISA~~~~gld 125 (188)
++.+||+++ ++|++.+ .+...+......+|+|+|+||+|+.+.+++.. +.. +. ..+++||+++.|++
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~ 84 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGKG 84 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccHH
Confidence 589999998 8887632 23444433223489999999999986654322 212 21 25889999999999
Q ss_pred HHHHHHHHhccc
Q psy7063 126 YLLDIIWLYLSL 137 (188)
Q Consensus 126 ~L~~~I~~~L~~ 137 (188)
.|.+.|.+++..
T Consensus 85 ~L~~~l~~~~~~ 96 (157)
T cd01858 85 SLIQLLRQFSKL 96 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999988763
No 22
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=5.4e-08 Score=86.00 Aligned_cols=115 Identities=21% Similarity=0.204 Sum_probs=70.3
Q ss_pred cCCchHHHHHHHh-cCCCCcEEEEEecCCCCChH---HHHHHhc-----CCCEEEEeccccccH----------------
Q psy7063 70 DCNADELIDVINA-NRVYLPCIYAYNKIDQISIE---EVDRIAR-----QPNSVVVSCNMKLNL---------------- 124 (188)
Q Consensus 70 D~s~dd~~~~l~~-~~~~kP~IlV~NKiDl~~~e---~l~~l~~-----~~~~vpISA~~~~gl---------------- 124 (188)
.|+.++....-.. ....||+++|+||.|....+ .++++.. ...+||+||+.+.-+
T Consensus 189 ~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~~E~eL~~l~~~~e~~~F~~~~ 268 (372)
T COG0012 189 KWSEEDLEALASLNLLTAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAAIELELRELADAEEKGEFLIEL 268 (372)
T ss_pred cCCHHHHHHHHHhhhhhcCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHHHHHHHHhCccccchhhHHHhc
Confidence 3666654333222 23579999999999986422 2444431 235999999765433
Q ss_pred -------HH----------HHHHHHHhcccceeee--------CCCCCCCCCCCcEEeccC------------CC--CCC
Q psy7063 125 -------DY----------LLDIIWLYLSLIRVYT--------KKPGAPPDFDDGLILRKG------------GT--STK 165 (188)
Q Consensus 125 -------d~----------L~~~I~~~L~~irVY~--------k~~g~~~d~~~p~il~~g------------g~--~~k 165 (188)
++ |.+.+-.-.+++|+|| +..|.+ .||......+ |. -|+
T Consensus 269 g~~~~~l~~~i~~~y~~lgl~~~ft~g~~evrawti~~g~kap~aaG~I--h~Dfe~~fi~aevi~~~d~i~~~~~~~Ak 346 (372)
T COG0012 269 GQKESGLNELIRAGYGLLGLQTYFTAGVKEVRAWTIKDGSKAPDAAGVI--HPDFEKGFIRAEVISYADLIHYGGEAAAK 346 (372)
T ss_pred CcchhHHHHHHHHHhcccchhHHHhhcCCeEEEEEeccCCcccccCCcc--ccchhhccccceEeeHHHHHhcCcHHHHH
Confidence 33 2233333445788888 455655 6666666666 11 122
Q ss_pred CCCcc--cCCCccccCCCeE--EEe
Q psy7063 166 YSPQR--VGLAHVMADEDVI--QIV 186 (188)
Q Consensus 166 ~~~qr--vg~d~~L~d~Dvv--~iv 186 (188)
-.|.+ +|+||+|+||||+ +|+
T Consensus 347 eag~~r~~GkdY~vqdGDVi~Fk~~ 371 (372)
T COG0012 347 EAGKRRLEGKDYIVQDGDVIHFKFN 371 (372)
T ss_pred HhcceeeccccceecCCCEEEEEec
Confidence 22344 9999999999999 665
No 23
>PRK15494 era GTPase Era; Provisional
Probab=98.64 E-value=1.2e-07 Score=83.28 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=72.3
Q ss_pred eEEEccCCc------cchhchhhHHHHHHhhhhhcccceeeEEE-EecCCc--hHHHH-HHHh-cCCCCcEEEEEecCCC
Q psy7063 30 GTFQSYTSS------INRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNA--DELID-VINA-NRVYLPCIYAYNKIDQ 98 (188)
Q Consensus 30 ~~~~~~~~~------ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~--dd~~~-~l~~-~~~~kP~IlV~NKiDl 98 (188)
+.|++.++. |++.|.+.++ ..+.+||+++ ++|.+. ++... .+.. .....|.|+|+||+|+
T Consensus 102 i~~~DTpG~~~~~~~l~~~~~r~~~---------~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl 172 (339)
T PRK15494 102 VILYDTPGIFEPKGSLEKAMVRCAW---------SSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDI 172 (339)
T ss_pred EEEEECCCcCCCcccHHHHHHHHHH---------HHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcC
Confidence 456665552 4455555555 3478999998 788642 22211 1211 1235788999999998
Q ss_pred CCh--HHHHHH-h---cCCCEEEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEE
Q psy7063 99 ISI--EEVDRI-A---RQPNSVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLI 156 (188)
Q Consensus 99 ~~~--e~l~~l-~---~~~~~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~i 156 (188)
.+. .++... . .+..++|+||++|.|+++|.+.|.+.++.-.-|- +++...|.|.-|+
T Consensus 173 ~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~-~~~~~td~~~~~~ 235 (339)
T PRK15494 173 ESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLY-AEDDITDLPMRFI 235 (339)
T ss_pred ccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCC-CCCCCCCCCHHHH
Confidence 643 222222 2 2245899999999999999999999987543222 3344444554444
No 24
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.62 E-value=1e-07 Score=75.31 Aligned_cols=78 Identities=17% Similarity=0.073 Sum_probs=54.6
Q ss_pred ccceeeEEE-EecCCchH---HHHHHHhcCCCCcEEEEEecCCCCChHHHHHH----hc-CCCEEEEeccccccHHHHHH
Q psy7063 59 KLTLKNVLF-REDCNADE---LIDVINANRVYLPCIYAYNKIDQISIEEVDRI----AR-QPNSVVVSCNMKLNLDYLLD 129 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd---~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~l----~~-~~~~vpISA~~~~gld~L~~ 129 (188)
.+.+||+++ ++|++... ....+. ....+|.++|+||+|+.+.+....+ .. ...++++||+++.|+++|.+
T Consensus 16 ~i~~aD~il~v~D~~~~~~~~~~~i~~-~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~ 94 (171)
T cd01856 16 KLKLVDLVIEVRDARIPLSSRNPLLEK-ILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGKGVKKLLK 94 (171)
T ss_pred HHhhCCEEEEEeeccCccCcCChhhHh-HhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcccHHHHHH
Confidence 589999998 88876321 111221 1235899999999999755433222 11 23579999999999999999
Q ss_pred HHHHhccc
Q psy7063 130 IIWLYLSL 137 (188)
Q Consensus 130 ~I~~~L~~ 137 (188)
.+.+.++.
T Consensus 95 ~l~~~l~~ 102 (171)
T cd01856 95 AAKKLLKD 102 (171)
T ss_pred HHHHHHHH
Confidence 99998754
No 25
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.60 E-value=9.4e-08 Score=76.46 Aligned_cols=84 Identities=15% Similarity=0.079 Sum_probs=56.6
Q ss_pred HhhhhhcccceeeEEE-EecCCchH--HHHHHHhcCCCCcEEEEEecCCCCChH----HHHHHh--------c--CCCEE
Q psy7063 52 EADTLPSKLTLKNVLF-REDCNADE--LIDVINANRVYLPCIYAYNKIDQISIE----EVDRIA--------R--QPNSV 114 (188)
Q Consensus 52 ~~~~~~~~i~~ADvvl-~~D~s~dd--~~~~l~~~~~~kP~IlV~NKiDl~~~e----~l~~l~--------~--~~~~v 114 (188)
+..+.. .+.+||+++ ++|++..+ ....+......+|+++|+||+|+.+.+ .+..+. . ..+++
T Consensus 25 ~~~l~~-~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (190)
T cd01855 25 LNLLSS-ISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVI 103 (190)
T ss_pred HHHHHh-cccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEE
Confidence 444444 489999998 88986321 112222223468999999999987432 122111 1 12589
Q ss_pred EEeccccccHHHHHHHHHHhcc
Q psy7063 115 VVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 115 pISA~~~~gld~L~~~I~~~L~ 136 (188)
++||++|.|+++|.+.|.+.++
T Consensus 104 ~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 104 LISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred EEECCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999874
No 26
>PRK00089 era GTPase Era; Reviewed
Probab=98.59 E-value=5.8e-07 Score=76.58 Aligned_cols=105 Identities=22% Similarity=0.206 Sum_probs=67.5
Q ss_pred eeEEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCc---hHHHHHHHhc-CCCCcEEEEEecCCCC-ChH
Q psy7063 29 KGTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNA---DELIDVINAN-RVYLPCIYAYNKIDQI-SIE 102 (188)
Q Consensus 29 ~~~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~---dd~~~~l~~~-~~~kP~IlV~NKiDl~-~~e 102 (188)
++.|++.|+-. . ++..+++++...+...+.+||+++ ++|++. +.....+... ...+|+++|+||+|+. +.+
T Consensus 54 qi~~iDTPG~~-~--~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~ 130 (292)
T PRK00089 54 QIIFVDTPGIH-K--PKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKE 130 (292)
T ss_pred eEEEEECCCCC-C--chhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHH
Confidence 45677766521 1 113333444444445688999997 788763 1222222211 2358999999999998 434
Q ss_pred HH----HHHh---cCCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 103 EV----DRIA---RQPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 103 ~l----~~l~---~~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
.+ +.+. .+.+++++||+++.|+++|.+.|.+.++
T Consensus 131 ~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 131 ELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 33 2222 3456899999999999999999999875
No 27
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.59 E-value=5.8e-07 Score=71.75 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=51.9
Q ss_pred ccceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEEEEEecCCCCChH--H-HH----HH-h--cC-----CCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNA---DELIDVINA-NRVYLPCIYAYNKIDQISIE--E-VD----RI-A--RQ-----PNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~IlV~NKiDl~~~e--~-l~----~l-~--~~-----~~~vpISA 118 (188)
++..+|+++ ++|+.. ....+.+.. ....+|+++|+||+|+...+ + ++ .+ . .+ .+++|+||
T Consensus 90 ~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa 169 (188)
T PF00009_consen 90 GLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISA 169 (188)
T ss_dssp HHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBT
T ss_pred eecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEec
Confidence 378899997 788762 222222221 23568999999999998321 1 11 22 1 11 24899999
Q ss_pred cccccHHHHHHHHHHhcc
Q psy7063 119 NMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L~ 136 (188)
.+|+|+++|++.|.++++
T Consensus 170 ~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 170 LTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTTBTHHHHHHHHHHHS-
T ss_pred CCCCCHHHHHHHHHHhCc
Confidence 999999999999999875
No 28
>PRK09866 hypothetical protein; Provisional
Probab=98.53 E-value=4.8e-07 Score=85.25 Aligned_cols=76 Identities=16% Similarity=0.088 Sum_probs=52.9
Q ss_pred ccceeeEEE-EecCCc----hH--HHHHHHhcCCCCcEEEEEecCCCCC-----hHHHHHH-----h----cCCCEEEEe
Q psy7063 59 KLTLKNVLF-REDCNA----DE--LIDVINANRVYLPCIYAYNKIDQIS-----IEEVDRI-----A----RQPNSVVVS 117 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~----dd--~~~~l~~~~~~kP~IlV~NKiDl~~-----~e~l~~l-----~----~~~~~vpIS 117 (188)
.+.+||++| ++|++. +| +...+.......|+++|+||+|..+ .+.+..+ . ++.+++|||
T Consensus 255 qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVS 334 (741)
T PRK09866 255 QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVS 334 (741)
T ss_pred HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 489999998 888752 22 2333322111249999999999875 2222211 1 255799999
Q ss_pred ccccccHHHHHHHHHHh
Q psy7063 118 CNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 118 A~~~~gld~L~~~I~~~ 134 (188)
|..|.|++.|++.|...
T Consensus 335 AlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 335 SMWGYLANRARHELANN 351 (741)
T ss_pred CCCCCCHHHHHHHHHhC
Confidence 99999999999999986
No 29
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.52 E-value=4.9e-07 Score=69.95 Aligned_cols=75 Identities=19% Similarity=0.151 Sum_probs=52.9
Q ss_pred cceeeEEE-EecCCch----H--HHHHHHhcCCCCcEEEEEecCCCCChHHHHH---Hh-c-CCCEEEEeccccccHHHH
Q psy7063 60 LTLKNVLF-REDCNAD----E--LIDVINANRVYLPCIYAYNKIDQISIEEVDR---IA-R-QPNSVVVSCNMKLNLDYL 127 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d----d--~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~---l~-~-~~~~vpISA~~~~gld~L 127 (188)
+++||+++ +.|++.. + +...+ ....+|+++|+||+|+.+.+.... +. . ..+++++||+++.|+++|
T Consensus 10 ~~~aD~vl~V~D~~~~~~~~~~~l~~~~--~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L 87 (156)
T cd01859 10 IKESDVVLEVLDARDPELTRSRKLERYV--LELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKIL 87 (156)
T ss_pred HhhCCEEEEEeeCCCCcccCCHHHHHHH--HhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHH
Confidence 46799998 7887531 1 22222 223689999999999975433322 21 1 235899999999999999
Q ss_pred HHHHHHhcc
Q psy7063 128 LDIIWLYLS 136 (188)
Q Consensus 128 ~~~I~~~L~ 136 (188)
.+.|.+.++
T Consensus 88 ~~~l~~~~~ 96 (156)
T cd01859 88 RRTIKELAK 96 (156)
T ss_pred HHHHHHHHh
Confidence 999998875
No 30
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.50 E-value=1.5e-06 Score=70.46 Aligned_cols=98 Identities=18% Similarity=0.172 Sum_probs=62.6
Q ss_pred ceeEEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCc----hHHHHHHHh--cCCCCcEEEEEecCCCCC
Q psy7063 28 SKGTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNA----DELIDVINA--NRVYLPCIYAYNKIDQIS 100 (188)
Q Consensus 28 ~~~~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~----dd~~~~l~~--~~~~kP~IlV~NKiDl~~ 100 (188)
.+++|++.|+. ..+..+.+ .++.++|+++ ++|++. .+..+.+.. ....+|+++|+||+|+.+
T Consensus 83 ~~i~~iDtPG~--~~~~~~~~---------~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 83 RHVSFVDCPGH--EILMATML---------SGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK 151 (203)
T ss_pred cEEEEEECCCh--HHHHHHHH---------HhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC
Confidence 45788887772 22333333 3477899987 788763 121222211 122357899999999986
Q ss_pred hHHH----HHHh----c----CCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 101 IEEV----DRIA----R----QPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 101 ~e~l----~~l~----~----~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
...+ +.+. . ..+++++||++|.|+++|.+.|.+.++
T Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 152 EEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 4322 2221 1 235899999999999999999998764
No 31
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.44 E-value=1.8e-06 Score=66.53 Aligned_cols=76 Identities=22% Similarity=0.222 Sum_probs=51.8
Q ss_pred cceeeEEE-EecCCch-H----H---HHHHHhc---CCCCcEEEEEecCCCCChHHH----HHHh-c--CCCEEEEeccc
Q psy7063 60 LTLKNVLF-REDCNAD-E----L---IDVINAN---RVYLPCIYAYNKIDQISIEEV----DRIA-R--QPNSVVVSCNM 120 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d-d----~---~~~l~~~---~~~kP~IlV~NKiDl~~~e~l----~~l~-~--~~~~vpISA~~ 120 (188)
+..||+++ ++|++.. + + .+.+... ...+|.++|+||+|+.+.... ..+. . ..+++++||++
T Consensus 76 ~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 155 (170)
T cd01898 76 IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALT 155 (170)
T ss_pred HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCC
Confidence 56799997 8898743 1 1 1122221 136899999999998754322 2222 2 24589999999
Q ss_pred cccHHHHHHHHHHhc
Q psy7063 121 KLNLDYLLDIIWLYL 135 (188)
Q Consensus 121 ~~gld~L~~~I~~~L 135 (188)
+.|+++|.+.|.+.|
T Consensus 156 ~~gi~~l~~~i~~~~ 170 (170)
T cd01898 156 GEGLDELLRKLAELL 170 (170)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999988764
No 32
>KOG1489|consensus
Probab=98.43 E-value=1.1e-06 Score=76.53 Aligned_cols=88 Identities=23% Similarity=0.244 Sum_probs=63.9
Q ss_pred ccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCch-------HHHH---HH---HhcCCCCcEEEEEecCCCCCh-H
Q psy7063 38 SINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNAD-------ELID---VI---NANRVYLPCIYAYNKIDQISI-E 102 (188)
Q Consensus 38 ~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~d-------d~~~---~l---~~~~~~kP~IlV~NKiDl~~~-e 102 (188)
++||=|=++.+. -|..|++++ |+|++.. ++.. .+ +.....+|.++|+||+|+.+. +
T Consensus 259 h~nkGlG~~FLr---------HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~ 329 (366)
T KOG1489|consen 259 HMNKGLGYKFLR---------HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK 329 (366)
T ss_pred cccCcccHHHHH---------HHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH
Confidence 599988888884 488899997 8997632 2211 11 223357999999999999633 3
Q ss_pred H-HHHHhc---CCCEEEEeccccccHHHHHHHHHHh
Q psy7063 103 E-VDRIAR---QPNSVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 103 ~-l~~l~~---~~~~vpISA~~~~gld~L~~~I~~~ 134 (188)
+ +..+.+ .++++|+||++++|++.|++.|...
T Consensus 330 ~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 330 NLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred HHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhhc
Confidence 3 355542 3469999999999999999988764
No 33
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.42 E-value=1.9e-06 Score=68.41 Aligned_cols=77 Identities=14% Similarity=0.093 Sum_probs=51.7
Q ss_pred ccceeeEEE-EecCCchH-HH---HH---HHh--cCCCCcEEEEEecCCCCC---hHHHHHHhc---C-----CCEEEEe
Q psy7063 59 KLTLKNVLF-REDCNADE-LI---DV---INA--NRVYLPCIYAYNKIDQIS---IEEVDRIAR---Q-----PNSVVVS 117 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd-~~---~~---l~~--~~~~kP~IlV~NKiDl~~---~e~l~~l~~---~-----~~~vpIS 117 (188)
-+.+||+++ ++|++..+ +. .. +.. ....+|+++|+||+|+.. .+++..+.. . .+++++|
T Consensus 72 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (183)
T cd04152 72 YTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPAC 151 (183)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEee
Confidence 367899997 88987532 11 11 111 123689999999999863 233433221 1 1367899
Q ss_pred ccccccHHHHHHHHHHhc
Q psy7063 118 CNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 118 A~~~~gld~L~~~I~~~L 135 (188)
|++|.|+++|.+.|.+.+
T Consensus 152 A~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 152 AIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred cccCCCHHHHHHHHHHHH
Confidence 999999999999988766
No 34
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.42 E-value=1.4e-06 Score=67.93 Aligned_cols=77 Identities=25% Similarity=0.211 Sum_probs=51.5
Q ss_pred ccceeeEEE-EecCCch----HHHHHHHhcCCCCcEEEEEecCCCCCh--HH-HHHHh---cC--CCEEEEeccccccHH
Q psy7063 59 KLTLKNVLF-REDCNAD----ELIDVINANRVYLPCIYAYNKIDQISI--EE-VDRIA---RQ--PNSVVVSCNMKLNLD 125 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d----d~~~~l~~~~~~kP~IlV~NKiDl~~~--e~-l~~l~---~~--~~~vpISA~~~~gld 125 (188)
.+..||+++ ++|++.. ++..........+|+++|+||+|+... .. ...+. .. .+++++||++|.|++
T Consensus 87 ~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (179)
T cd01890 87 SLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVE 166 (179)
T ss_pred HHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHH
Confidence 367899997 8888642 221111112246899999999998632 11 22222 22 248999999999999
Q ss_pred HHHHHHHHhc
Q psy7063 126 YLLDIIWLYL 135 (188)
Q Consensus 126 ~L~~~I~~~L 135 (188)
+|.+.|.+.+
T Consensus 167 ~l~~~l~~~~ 176 (179)
T cd01890 167 DLLEAIVERI 176 (179)
T ss_pred HHHHHHHhhC
Confidence 9999998775
No 35
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.39 E-value=2.6e-06 Score=64.25 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=52.2
Q ss_pred ccceeeEEE-EecCCc----hH--HHHHHHhcCCCCcEEEEEecCCCCChHHH-HHHhc--CCCEEEEeccccccHHHHH
Q psy7063 59 KLTLKNVLF-REDCNA----DE--LIDVINANRVYLPCIYAYNKIDQISIEEV-DRIAR--QPNSVVVSCNMKLNLDYLL 128 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~----dd--~~~~l~~~~~~kP~IlV~NKiDl~~~e~l-~~l~~--~~~~vpISA~~~~gld~L~ 128 (188)
.+..+|+++ ++|++. .+ +...+ ....+|+++|+||+|+...+.. ..+.. ..+++++||+++.|+++|.
T Consensus 73 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 150 (157)
T cd01894 73 AIEEADVILFVVDGREGLTPADEEIAKYL--RKSKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLL 150 (157)
T ss_pred HHHhCCEEEEEEeccccCCccHHHHHHHH--HhcCCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHH
Confidence 467899997 777652 11 22222 2245999999999999865432 22322 3368999999999999999
Q ss_pred HHHHHhc
Q psy7063 129 DIIWLYL 135 (188)
Q Consensus 129 ~~I~~~L 135 (188)
+.|.+.+
T Consensus 151 ~~l~~~~ 157 (157)
T cd01894 151 DAILELL 157 (157)
T ss_pred HHHHhhC
Confidence 9988753
No 36
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.38 E-value=1.2e-06 Score=79.92 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=57.8
Q ss_pred hhhhhcccceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCCCh-HHHHHHh--cCCCEEEEeccccc
Q psy7063 53 ADTLPSKLTLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQISI-EEVDRIA--RQPNSVVVSCNMKL 122 (188)
Q Consensus 53 ~~~~~~~i~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~~~-e~l~~l~--~~~~~vpISA~~~~ 122 (188)
.......+.+||++| ++|++.. .+...+. ...+|+++|+||+|+... .+...+. .+...+++||++|.
T Consensus 108 ~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~--~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 108 AEQAEVAMRTADAVLFVVDATVGATATDEAVARVLR--RSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGR 185 (472)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH--HcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCC
Confidence 333445688999998 8898631 1223332 346999999999998643 2222222 34457899999999
Q ss_pred cHHHHHHHHHHhccc
Q psy7063 123 NLDYLLDIIWLYLSL 137 (188)
Q Consensus 123 gld~L~~~I~~~L~~ 137 (188)
|+++|.+.|.+.+..
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999988743
No 37
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.37 E-value=2.9e-06 Score=74.33 Aligned_cols=76 Identities=22% Similarity=0.183 Sum_probs=52.7
Q ss_pred cceeeEEE-EecCCch-------HHH---HHHHh---cCCCCcEEEEEecCCCCChHHHH----HHh-cC-CCEEEEecc
Q psy7063 60 LTLKNVLF-REDCNAD-------ELI---DVINA---NRVYLPCIYAYNKIDQISIEEVD----RIA-RQ-PNSVVVSCN 119 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d-------d~~---~~l~~---~~~~kP~IlV~NKiDl~~~e~l~----~l~-~~-~~~vpISA~ 119 (188)
+..||+++ ++|++.. ++. +.+.. ....+|+++|+||+|+...+.++ .+. .+ ..++++||+
T Consensus 233 ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAk 312 (329)
T TIGR02729 233 IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISAL 312 (329)
T ss_pred HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 67899998 8898742 211 11211 11368999999999997554332 222 11 358999999
Q ss_pred ccccHHHHHHHHHHhc
Q psy7063 120 MKLNLDYLLDIIWLYL 135 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L 135 (188)
++.|+++|.+.|.+.|
T Consensus 313 tg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 313 TGEGLDELLYALAELL 328 (329)
T ss_pred CCcCHHHHHHHHHHHh
Confidence 9999999999998876
No 38
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.36 E-value=6e-06 Score=62.85 Aligned_cols=75 Identities=8% Similarity=-0.013 Sum_probs=49.2
Q ss_pred ccceeeEEE-EecCCc---hHHHHHHH--hcCCCCcEEEEEecCCCCChHH-------HHH-Hhc----CCCEEEEeccc
Q psy7063 59 KLTLKNVLF-REDCNA---DELIDVIN--ANRVYLPCIYAYNKIDQISIEE-------VDR-IAR----QPNSVVVSCNM 120 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~---dd~~~~l~--~~~~~kP~IlV~NKiDl~~~e~-------l~~-l~~----~~~~vpISA~~ 120 (188)
.+.+||+++ ++|++. .+..+.+. .....+|+++|+||+|+...+. +.. +.. ..+++++||++
T Consensus 71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (164)
T cd04171 71 GAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVT 150 (164)
T ss_pred hhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCC
Confidence 377899997 888764 22222211 1112259999999999975421 111 111 23589999999
Q ss_pred cccHHHHHHHHHH
Q psy7063 121 KLNLDYLLDIIWL 133 (188)
Q Consensus 121 ~~gld~L~~~I~~ 133 (188)
+.|+++|.+.+.+
T Consensus 151 ~~~v~~l~~~l~~ 163 (164)
T cd04171 151 GEGIEELKEYLDE 163 (164)
T ss_pred CcCHHHHHHHHhh
Confidence 9999999888754
No 39
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.36 E-value=2.6e-06 Score=76.28 Aligned_cols=79 Identities=19% Similarity=0.148 Sum_probs=54.8
Q ss_pred cceeeEEE-EecCC---chH----HH---HHHHhc---CCCCcEEEEEecCCCCChHHH----HHHh-c--C-CCEEEEe
Q psy7063 60 LTLKNVLF-REDCN---ADE----LI---DVINAN---RVYLPCIYAYNKIDQISIEEV----DRIA-R--Q-PNSVVVS 117 (188)
Q Consensus 60 i~~ADvvl-~~D~s---~dd----~~---~~l~~~---~~~kP~IlV~NKiDl~~~e~l----~~l~-~--~-~~~vpIS 117 (188)
+..||+++ ++|++ ..+ +. ..+... ...+|.++|+||+|+.+.+++ ..+. . + ..++++|
T Consensus 235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~IS 314 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLIS 314 (390)
T ss_pred HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 78899998 88876 111 11 112111 135899999999999755432 2222 1 2 2589999
Q ss_pred ccccccHHHHHHHHHHhcccc
Q psy7063 118 CNMKLNLDYLLDIIWLYLSLI 138 (188)
Q Consensus 118 A~~~~gld~L~~~I~~~L~~i 138 (188)
|+++.|+++|.+.|.+.++.-
T Consensus 315 A~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 315 AASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCCCcCHHHHHHHHHHHhhhC
Confidence 999999999999999998753
No 40
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.36 E-value=2.8e-06 Score=74.70 Aligned_cols=78 Identities=24% Similarity=0.238 Sum_probs=53.7
Q ss_pred cceeeEEE-EecCCch----HHH---HHHHhc---CCCCcEEEEEecCCCCChHHH-----HHH-hcC-CCEEEEecccc
Q psy7063 60 LTLKNVLF-REDCNAD----ELI---DVINAN---RVYLPCIYAYNKIDQISIEEV-----DRI-ARQ-PNSVVVSCNMK 121 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d----d~~---~~l~~~---~~~kP~IlV~NKiDl~~~e~l-----~~l-~~~-~~~vpISA~~~ 121 (188)
+..|++++ ++|++.. ++. +.+... ...+|+++|+||+|+.+.+.. ..+ ... ..++++||+++
T Consensus 234 ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg 313 (335)
T PRK12299 234 IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTG 313 (335)
T ss_pred hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 67899998 8898742 221 122111 135899999999998754321 111 122 35899999999
Q ss_pred ccHHHHHHHHHHhccc
Q psy7063 122 LNLDYLLDIIWLYLSL 137 (188)
Q Consensus 122 ~gld~L~~~I~~~L~~ 137 (188)
.|+++|.+.|.+.+..
T Consensus 314 ~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 314 EGLDELLRALWELLEE 329 (335)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988753
No 41
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.35 E-value=4.1e-06 Score=64.62 Aligned_cols=78 Identities=15% Similarity=0.032 Sum_probs=52.3
Q ss_pred cccceeeEEE-EecCCchHH-------HHHHHh-cCCCCcEEEEEecCCCCChH-----HHHHHh---cCCCEEEEeccc
Q psy7063 58 SKLTLKNVLF-REDCNADEL-------IDVINA-NRVYLPCIYAYNKIDQISIE-----EVDRIA---RQPNSVVVSCNM 120 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~-------~~~l~~-~~~~kP~IlV~NKiDl~~~e-----~l~~l~---~~~~~vpISA~~ 120 (188)
..+.++|+++ ++|++...- ...+.. .....|+++|+||+|+.... ....+. ....++++||++
T Consensus 71 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (165)
T cd01864 71 SYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKE 150 (165)
T ss_pred HHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCC
Confidence 3467899997 788875321 122221 22358999999999986331 222222 223579999999
Q ss_pred cccHHHHHHHHHHhc
Q psy7063 121 KLNLDYLLDIIWLYL 135 (188)
Q Consensus 121 ~~gld~L~~~I~~~L 135 (188)
|.|++++.+.+.+.|
T Consensus 151 ~~~v~~~~~~l~~~l 165 (165)
T cd01864 151 SQNVEEAFLLMATEL 165 (165)
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999887654
No 42
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.34 E-value=1.3e-06 Score=74.50 Aligned_cols=76 Identities=13% Similarity=0.104 Sum_probs=54.8
Q ss_pred ccceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCCChHHHHHH----hc-CCCEEEEeccccccHHH
Q psy7063 59 KLTLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQISIEEVDRI----AR-QPNSVVVSCNMKLNLDY 126 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~l----~~-~~~~vpISA~~~~gld~ 126 (188)
.+.+||+++ +.|+..+ .+.+.+ ..+|+|+|+||+|+.+.+....+ .. ...++++||.++.|++.
T Consensus 18 ~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~ 93 (276)
T TIGR03596 18 KLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKGVKK 93 (276)
T ss_pred HHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHH
Confidence 588999998 8887521 222322 35899999999999765433222 12 12579999999999999
Q ss_pred HHHHHHHhcccc
Q psy7063 127 LLDIIWLYLSLI 138 (188)
Q Consensus 127 L~~~I~~~L~~i 138 (188)
|.+.|.+.++..
T Consensus 94 L~~~i~~~~~~~ 105 (276)
T TIGR03596 94 IIKAAKKLLKEK 105 (276)
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 43
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.34 E-value=2.8e-06 Score=78.32 Aligned_cols=80 Identities=21% Similarity=0.198 Sum_probs=55.5
Q ss_pred cceeeEEE-EecCCc-----h---HH---HHHHHh------------cCCCCcEEEEEecCCCCChHHH-H----HHhcC
Q psy7063 60 LTLKNVLF-REDCNA-----D---EL---IDVINA------------NRVYLPCIYAYNKIDQISIEEV-D----RIARQ 110 (188)
Q Consensus 60 i~~ADvvl-~~D~s~-----d---d~---~~~l~~------------~~~~kP~IlV~NKiDl~~~e~l-~----~l~~~ 110 (188)
+..||+++ ++|++. + ++ ...+.. ....+|+|+|+||+|+....++ + .+...
T Consensus 234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~ 313 (500)
T PRK12296 234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEAR 313 (500)
T ss_pred HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHc
Confidence 67899998 889862 1 11 112211 1236899999999999754332 1 12121
Q ss_pred -CCEEEEeccccccHHHHHHHHHHhcccce
Q psy7063 111 -PNSVVVSCNMKLNLDYLLDIIWLYLSLIR 139 (188)
Q Consensus 111 -~~~vpISA~~~~gld~L~~~I~~~L~~ir 139 (188)
..+++|||+++.|+++|.+.|.+.+...+
T Consensus 314 g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 314 GWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 25899999999999999999999887665
No 44
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.34 E-value=3.3e-06 Score=65.14 Aligned_cols=51 Identities=33% Similarity=0.419 Sum_probs=38.7
Q ss_pred CCCcEEEEEecCCCCChHHHHHH-----h--cCCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 85 VYLPCIYAYNKIDQISIEEVDRI-----A--RQPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~~e~l~~l-----~--~~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
..+|+++|+||+|+......... . ....++++||+++.|+++|.+.+...+
T Consensus 119 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 119 TAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYELL 176 (176)
T ss_pred hhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence 36999999999999755433221 1 234589999999999999999887653
No 45
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.33 E-value=8.6e-07 Score=70.06 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=48.8
Q ss_pred cceeeEEE-EecCCchH----HHHHHHhcCCCCcEEEEEecCCCCChHH----HHHHhc--CCCEEEEeccccccHHHHH
Q psy7063 60 LTLKNVLF-REDCNADE----LIDVINANRVYLPCIYAYNKIDQISIEE----VDRIAR--QPNSVVVSCNMKLNLDYLL 128 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~~l~~~~~~kP~IlV~NKiDl~~~e~----l~~l~~--~~~~vpISA~~~~gld~L~ 128 (188)
-...|+++ ++|++.-+ +..++. ...+|+++|+||+|.+.... .+.+.+ ..+++|+||.++.|+++|+
T Consensus 76 ~~~~D~ii~VvDa~~l~r~l~l~~ql~--e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 76 SEKPDLIIVVVDATNLERNLYLTLQLL--ELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp HTSSSEEEEEEEGGGHHHHHHHHHHHH--HTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred hcCCCEEEEECCCCCHHHHHHHHHHHH--HcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 36799998 89988321 222332 24699999999999874321 233321 1359999999999999999
Q ss_pred HHH
Q psy7063 129 DII 131 (188)
Q Consensus 129 ~~I 131 (188)
++|
T Consensus 154 ~~I 156 (156)
T PF02421_consen 154 DAI 156 (156)
T ss_dssp HHH
T ss_pred hhC
Confidence 886
No 46
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.33 E-value=4.6e-06 Score=74.59 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=52.1
Q ss_pred ccceeeEEE-EecCCch---HHHHHHHh-cCCCCcEEEEEecCCCC-ChHHHHH----Hh------cCCCEEEEeccccc
Q psy7063 59 KLTLKNVLF-REDCNAD---ELIDVINA-NRVYLPCIYAYNKIDQI-SIEEVDR----IA------RQPNSVVVSCNMKL 122 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d---d~~~~l~~-~~~~kP~IlV~NKiDl~-~~e~l~~----l~------~~~~~vpISA~~~~ 122 (188)
.+..||+++ ++|++.. .....+.. ....+|+++|+||+|+. +.+..+. +. .+.+++++||++|.
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~ 330 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQ 330 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCC
Confidence 478999998 8887631 11111111 22468999999999997 3332221 11 12468999999999
Q ss_pred cHHHHHHHHHHhcc
Q psy7063 123 NLDYLLDIIWLYLS 136 (188)
Q Consensus 123 gld~L~~~I~~~L~ 136 (188)
|+++|.+.+.+...
T Consensus 331 ~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 331 GVDKLLDAIDEVYE 344 (429)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999888776543
No 47
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.33 E-value=3.2e-06 Score=66.28 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=51.8
Q ss_pred cceeeEEE-EecCCchH-HH---HHHHhc--CCCCcEEEEEecCCCCChH-----HHHHHh---cCCCEEEEeccccccH
Q psy7063 60 LTLKNVLF-REDCNADE-LI---DVINAN--RVYLPCIYAYNKIDQISIE-----EVDRIA---RQPNSVVVSCNMKLNL 124 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd-~~---~~l~~~--~~~kP~IlV~NKiDl~~~e-----~l~~l~---~~~~~vpISA~~~~gl 124 (188)
+.+||+++ ++|.+..+ +. ..+... ...+|+++|+||+|+.+.. +.+.+. .....+++||++|.|+
T Consensus 75 ~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (169)
T cd01892 75 LAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSS 154 (169)
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccH
Confidence 58999998 88987532 22 222211 2368999999999986321 122232 2234689999999999
Q ss_pred HHHHHHHHHhc
Q psy7063 125 DYLLDIIWLYL 135 (188)
Q Consensus 125 d~L~~~I~~~L 135 (188)
++|.+.+.+.+
T Consensus 155 ~~lf~~l~~~~ 165 (169)
T cd01892 155 NELFTKLATAA 165 (169)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 48
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.32 E-value=3.4e-06 Score=64.95 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=38.8
Q ss_pred CCcEEEEEecCCCCChHHHH---HHhc--CCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 86 YLPCIYAYNKIDQISIEEVD---RIAR--QPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 86 ~kP~IlV~NKiDl~~~e~l~---~l~~--~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
.+|+++|+||+|+.....+. .+.. ...++++||++|.|+++|.+.|.+.|
T Consensus 113 ~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 113 NKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred cCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 68999999999997554332 2222 23589999999999999999988765
No 49
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.32 E-value=1.5e-06 Score=67.79 Aligned_cols=90 Identities=16% Similarity=0.115 Sum_probs=61.6
Q ss_pred EEccCC--ccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCchH-HH--HHHHhcCCCCcEEEEEecCCCC-ChHHH
Q psy7063 32 FQSYTS--SINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNADE-LI--DVINANRVYLPCIYAYNKIDQI-SIEEV 104 (188)
Q Consensus 32 ~~~~~~--~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~dd-~~--~~l~~~~~~kP~IlV~NKiDl~-~~e~l 104 (188)
++..|+ .=|+.|.+.+. ....+||+++ +.|++... .. .+. ....+|+|=|++|+|+. +.+++
T Consensus 40 ~IDTPGEyiE~~~~y~aLi---------~ta~dad~V~ll~dat~~~~~~pP~fa--~~f~~pvIGVITK~Dl~~~~~~i 108 (143)
T PF10662_consen 40 TIDTPGEYIENPRFYHALI---------VTAQDADVVLLLQDATEPRSVFPPGFA--SMFNKPVIGVITKIDLPSDDANI 108 (143)
T ss_pred EEECChhheeCHHHHHHHH---------HHHhhCCEEEEEecCCCCCccCCchhh--cccCCCEEEEEECccCccchhhH
Confidence 344454 24666666666 3467999997 88987542 11 122 23469999999999998 44444
Q ss_pred HHH----h--cCCCEEEEeccccccHHHHHHHHH
Q psy7063 105 DRI----A--RQPNSVVVSCNMKLNLDYLLDIIW 132 (188)
Q Consensus 105 ~~l----~--~~~~~vpISA~~~~gld~L~~~I~ 132 (188)
++. . ...+++++||.+|+|+++|.+.|.
T Consensus 109 ~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 109 ERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 332 2 234689999999999999999875
No 50
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.31 E-value=5.5e-06 Score=74.34 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=52.1
Q ss_pred cccceeeEEE-EecCCch----H--HHHHHHhcCCCCcEEEEEecCCCCChHHHH----HHh------cCCCEEEEeccc
Q psy7063 58 SKLTLKNVLF-REDCNAD----E--LIDVINANRVYLPCIYAYNKIDQISIEEVD----RIA------RQPNSVVVSCNM 120 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d----d--~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~----~l~------~~~~~vpISA~~ 120 (188)
..+..||+++ ++|++.. + +...+ ....+|+++|+||+|+.+.+... .+. .+.+++++||++
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~i~~~~--~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~ 328 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLRIAGLA--LEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALT 328 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHHHHHHH--HHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCC
Confidence 3578999997 8887632 1 12222 22469999999999998543221 111 134689999999
Q ss_pred cccHHHHHHHHHHhc
Q psy7063 121 KLNLDYLLDIIWLYL 135 (188)
Q Consensus 121 ~~gld~L~~~I~~~L 135 (188)
|.|+++|.+.+.+..
T Consensus 329 ~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 329 GQGVDKLLEAIDEAY 343 (435)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999988876643
No 51
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.31 E-value=2.7e-06 Score=76.09 Aligned_cols=86 Identities=16% Similarity=0.156 Sum_probs=60.3
Q ss_pred HHHhhhhhcccceeeEEE-EecCCc----hH--HHHHHHhcCCCCcEEEEEecCCCCChH-HHHHHh--cCCCEEEEecc
Q psy7063 50 AYEADTLPSKLTLKNVLF-REDCNA----DE--LIDVINANRVYLPCIYAYNKIDQISIE-EVDRIA--RQPNSVVVSCN 119 (188)
Q Consensus 50 a~~~~~~~~~i~~ADvvl-~~D~s~----dd--~~~~l~~~~~~kP~IlV~NKiDl~~~e-~l~~l~--~~~~~vpISA~ 119 (188)
+.+.......+.+||+++ ++|++. .+ +...+. +..+|+++|+||+|+...+ ....+. .+.+++++||+
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~--~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~ 143 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLR--KSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAE 143 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHH--HhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCC
Confidence 333344445689999998 888752 22 333332 3469999999999987543 233333 34578999999
Q ss_pred ccccHHHHHHHHHHhccc
Q psy7063 120 MKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~~ 137 (188)
+|.|+++|.+.+.+.++.
T Consensus 144 ~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 144 HGRGIGDLLDAILELLPE 161 (429)
T ss_pred cCCChHHHHHHHHHhcCc
Confidence 999999999999988753
No 52
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.30 E-value=2.8e-06 Score=65.95 Aligned_cols=72 Identities=13% Similarity=0.061 Sum_probs=47.5
Q ss_pred eEEE-EecCCch-----HHHHHHHhcCCCCcEEEEEecCCCCChHHHHH----Hhc--CCCEEEEeccccccHHHHHHHH
Q psy7063 64 NVLF-REDCNAD-----ELIDVINANRVYLPCIYAYNKIDQISIEEVDR----IAR--QPNSVVVSCNMKLNLDYLLDII 131 (188)
Q Consensus 64 Dvvl-~~D~s~d-----d~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~----l~~--~~~~vpISA~~~~gld~L~~~I 131 (188)
|+++ ++|++.+ ............+|+|+|+||+|+.+.+++.. +.. +..++++||.++.|+++|.+.|
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i 80 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF 80 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHH
Confidence 5666 7787522 11110111234699999999999986654322 222 2357999999999999999998
Q ss_pred HHhc
Q psy7063 132 WLYL 135 (188)
Q Consensus 132 ~~~L 135 (188)
.+.+
T Consensus 81 ~~~~ 84 (155)
T cd01849 81 TKQT 84 (155)
T ss_pred HHHh
Confidence 7653
No 53
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.30 E-value=5.6e-06 Score=64.00 Aligned_cols=77 Identities=19% Similarity=0.088 Sum_probs=51.4
Q ss_pred ccceeeEEE-EecCCchH----HH---HHHHhcCCCCcEEEEEecCCCCChH--HHHHHh-c-CCCEEEEeccccccHHH
Q psy7063 59 KLTLKNVLF-REDCNADE----LI---DVINANRVYLPCIYAYNKIDQISIE--EVDRIA-R-QPNSVVVSCNMKLNLDY 126 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~---~~l~~~~~~kP~IlV~NKiDl~~~e--~l~~l~-~-~~~~vpISA~~~~gld~ 126 (188)
.+.+||+++ ++|.+..+ +. ..+......+|+++|+||+|+.... +...+. . ..+++++||++|.|+++
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 69 YYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVK 148 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 468899997 88987432 11 1222222368999999999985321 111221 1 13489999999999999
Q ss_pred HHHHHHHhc
Q psy7063 127 LLDIIWLYL 135 (188)
Q Consensus 127 L~~~I~~~L 135 (188)
|.+.+.+.+
T Consensus 149 l~~~l~~~~ 157 (161)
T cd04124 149 LFQDAIKLA 157 (161)
T ss_pred HHHHHHHHH
Confidence 999887653
No 54
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.28 E-value=4.4e-06 Score=65.83 Aligned_cols=76 Identities=14% Similarity=-0.060 Sum_probs=50.6
Q ss_pred cceeeEEE-EecCCchH-H---HHHHHh---c--CCCCcEEEEEecCCCCCh---HHHHHHhcC-------CCEEEEecc
Q psy7063 60 LTLKNVLF-REDCNADE-L---IDVINA---N--RVYLPCIYAYNKIDQISI---EEVDRIARQ-------PNSVVVSCN 119 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd-~---~~~l~~---~--~~~kP~IlV~NKiDl~~~---e~l~~l~~~-------~~~vpISA~ 119 (188)
+.+||+++ ++|.+..+ + .+.+.. . ....|+++|+||+|+... +++...... ..++++||+
T Consensus 78 ~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 157 (175)
T smart00177 78 YTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCAT 157 (175)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCC
Confidence 68899998 88987532 1 112211 1 125899999999998632 333222111 125689999
Q ss_pred ccccHHHHHHHHHHhc
Q psy7063 120 MKLNLDYLLDIIWLYL 135 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L 135 (188)
+|.|++++.+.|.+.+
T Consensus 158 ~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 158 SGDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988764
No 55
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.28 E-value=4.8e-06 Score=75.39 Aligned_cols=81 Identities=19% Similarity=0.163 Sum_probs=56.1
Q ss_pred cceeeEEE-EecCCch-------HHHH---HHHh---cCCCCcEEEEEecCCCCCh-HHHHHHhc-C-CCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNAD-------ELID---VINA---NRVYLPCIYAYNKIDQISI-EEVDRIAR-Q-PNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d-------d~~~---~l~~---~~~~kP~IlV~NKiDl~~~-e~l~~l~~-~-~~~vpISA~~~~ 122 (188)
+..+++++ ++|++.. ++.. .+.. ....+|.++|+||+|+... +.++.+.. + ..++++||+++.
T Consensus 234 ier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 234 IERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred HhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 67799998 8898531 2211 2211 1136899999999998543 33443432 2 358999999999
Q ss_pred cHHHHHHHHHHhccccee
Q psy7063 123 NLDYLLDIIWLYLSLIRV 140 (188)
Q Consensus 123 gld~L~~~I~~~L~~irV 140 (188)
|+++|.+.|.+.+...+-
T Consensus 314 GI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 314 GLDELLYAVAELLEETPE 331 (424)
T ss_pred CHHHHHHHHHHHHHhCcc
Confidence 999999999998876543
No 56
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.28 E-value=8.2e-06 Score=65.13 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=51.0
Q ss_pred cceeeEEE-EecCCc---hHHHHHH-HhcCCCCcEEEEEecCCCCChHH----HHHHh------------cCCCEEEEec
Q psy7063 60 LTLKNVLF-REDCNA---DELIDVI-NANRVYLPCIYAYNKIDQISIEE----VDRIA------------RQPNSVVVSC 118 (188)
Q Consensus 60 i~~ADvvl-~~D~s~---dd~~~~l-~~~~~~kP~IlV~NKiDl~~~e~----l~~l~------------~~~~~vpISA 118 (188)
+..+|.++ ++|++. ....+.+ ......+|+++|+||+|+...+. ++.+. ...+++++||
T Consensus 89 ~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa 168 (192)
T cd01889 89 AQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSA 168 (192)
T ss_pred HhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEec
Confidence 57788987 888763 1111111 11223679999999999874322 11110 1125899999
Q ss_pred cccccHHHHHHHHHHhcc
Q psy7063 119 NMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L~ 136 (188)
++|.|+++|++.+-+...
T Consensus 169 ~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 169 KPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCCCCHHHHHHHHHhccc
Confidence 999999999999988754
No 57
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.27 E-value=3.9e-06 Score=63.17 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=52.8
Q ss_pred cceeeEEE-EecCCch---HHHHHHHhcCCCCcEEEEEecCCCCChHHHHHHhcCCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 60 LTLKNVLF-REDCNAD---ELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d---d~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~l~~~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
+..+|+++ +.|++.. .....+.. ...+|+++|+||+|+.+............++++||.++.|+++|.+.|.+.+
T Consensus 78 ~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 78 IEEADLVLFVIDASRGLDEEDLEILEL-PADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred HhhCCEEEEEEECCCCCCHHHHHHHHh-hcCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 57899997 7887721 12222221 3469999999999998654331111234689999999999999999998765
No 58
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.27 E-value=5.8e-06 Score=75.59 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=61.5
Q ss_pred eeEEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCch----HHHHHHH-h-cCCCCcEEEEEecCCCCCh
Q psy7063 29 KGTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNAD----ELIDVIN-A-NRVYLPCIYAYNKIDQISI 101 (188)
Q Consensus 29 ~~~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~d----d~~~~l~-~-~~~~kP~IlV~NKiDl~~~ 101 (188)
+++|++.|+ -..+.++.+ .++..+|+++ ++|++.. .-.+.+. . ...-+|.|+|+||+|+.+.
T Consensus 118 ~i~~IDtPG--H~~fi~~m~---------~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 118 HVSFVDCPG--HDILMATML---------NGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKE 186 (460)
T ss_pred eEeeeeCCC--HHHHHHHHH---------HHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCH
Confidence 467777776 223344444 3577899886 7887531 1112211 1 1122568999999999864
Q ss_pred HHH----HHHh--------cCCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 102 EEV----DRIA--------RQPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 102 e~l----~~l~--------~~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
+.+ +.+. ...+++|+||.+|.|++.|+++|.+.++
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 332 1121 1236899999999999999999997665
No 59
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.26 E-value=3.5e-06 Score=63.47 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=47.5
Q ss_pred cceeeEEE-EecCCchH-HH-HHHHhcCCCCcEEEEEecCCCCCh----HHHHHHh---cCCCEEEEeccccccHHHHHH
Q psy7063 60 LTLKNVLF-REDCNADE-LI-DVINANRVYLPCIYAYNKIDQISI----EEVDRIA---RQPNSVVVSCNMKLNLDYLLD 129 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd-~~-~~l~~~~~~kP~IlV~NKiDl~~~----e~l~~l~---~~~~~vpISA~~~~gld~L~~ 129 (188)
+++||+++ ++|++... .. ..+.. ...+|+++|+||+|+.+. +....+. ...+++++||++|.|+++|.+
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFAS-IFVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHH-hccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 78999998 88876332 11 11111 123599999999998642 1222222 123589999999999999987
Q ss_pred HHH
Q psy7063 130 IIW 132 (188)
Q Consensus 130 ~I~ 132 (188)
.|.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 763
No 60
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.26 E-value=6.9e-06 Score=62.61 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=48.4
Q ss_pred cceeeEEE-EecCCchH--------HHHHHHhc---CCCCcEEEEEecCCCCCh---HHHHHHhcC------C-CEEEEe
Q psy7063 60 LTLKNVLF-REDCNADE--------LIDVINAN---RVYLPCIYAYNKIDQISI---EEVDRIARQ------P-NSVVVS 117 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd--------~~~~l~~~---~~~kP~IlV~NKiDl~~~---e~l~~l~~~------~-~~vpIS 117 (188)
+.+||.++ ++|++... +...+... ...+|+++|+||+|+... +++...... + .++++|
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~S 145 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASN 145 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEee
Confidence 67899998 88987432 11111111 135899999999998643 222222111 1 268899
Q ss_pred ccccccHHHHHHHHHH
Q psy7063 118 CNMKLNLDYLLDIIWL 133 (188)
Q Consensus 118 A~~~~gld~L~~~I~~ 133 (188)
|++|.|++++.+.|.+
T Consensus 146 a~~g~gv~~~~~~l~~ 161 (162)
T cd04157 146 ALTGEGLDEGVQWLQA 161 (162)
T ss_pred CCCCCchHHHHHHHhc
Confidence 9999999999988753
No 61
>PRK04213 GTP-binding protein; Provisional
Probab=98.26 E-value=7.8e-06 Score=65.35 Aligned_cols=51 Identities=27% Similarity=0.275 Sum_probs=38.1
Q ss_pred CCCcEEEEEecCCCCChH--HHHHHh---cC--------CCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 85 VYLPCIYAYNKIDQISIE--EVDRIA---RQ--------PNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~~e--~l~~l~---~~--------~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
..+|+++|+||+|+.... ....+. .. ..++++||++| |+++|.+.|.+.+.
T Consensus 129 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred cCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 468999999999986432 232221 11 13799999999 99999999988765
No 62
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.25 E-value=6.2e-06 Score=64.63 Aligned_cols=75 Identities=12% Similarity=-0.116 Sum_probs=49.6
Q ss_pred ccceeeEEE-EecCCchH-HH---HHHHh---c--CCCCcEEEEEecCCCCC---hHHHHHHhc---C----CCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNADE-LI---DVINA---N--RVYLPCIYAYNKIDQIS---IEEVDRIAR---Q----PNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd-~~---~~l~~---~--~~~kP~IlV~NKiDl~~---~e~l~~l~~---~----~~~vpISA 118 (188)
.+.+||+++ ++|++... +. ..+.. . ...+|+++|+||+|+.. .+++..... . -.++++||
T Consensus 73 ~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA 152 (168)
T cd04149 73 YYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCA 152 (168)
T ss_pred HhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeC
Confidence 467899998 89987532 21 11111 1 13589999999999863 234433211 1 13688999
Q ss_pred cccccHHHHHHHHHH
Q psy7063 119 NMKLNLDYLLDIIWL 133 (188)
Q Consensus 119 ~~~~gld~L~~~I~~ 133 (188)
++|.|++++.+.|.+
T Consensus 153 k~g~gv~~~~~~l~~ 167 (168)
T cd04149 153 TSGDGLYEGLTWLSS 167 (168)
T ss_pred CCCCChHHHHHHHhc
Confidence 999999998887754
No 63
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.24 E-value=4.3e-06 Score=64.83 Aligned_cols=78 Identities=9% Similarity=0.001 Sum_probs=51.9
Q ss_pred cccceeeEEE-EecCCchH-HH---H----HHHhcCCCCcEEEEEecCCCCChH-----------------HHHHHh---
Q psy7063 58 SKLTLKNVLF-REDCNADE-LI---D----VINANRVYLPCIYAYNKIDQISIE-----------------EVDRIA--- 108 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd-~~---~----~l~~~~~~kP~IlV~NKiDl~~~e-----------------~l~~l~--- 108 (188)
..+.+||+++ +.|++..+ +. . .+......+|+++|+||+|+.... +...+.
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 144 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI 144 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHc
Confidence 3467899998 78887432 11 1 122223479999999999986421 111121
Q ss_pred cCCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 109 RQPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 109 ~~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
.....+++||++|.|+++|.+.+.+.+
T Consensus 145 ~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 145 GAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 122578999999999999999887653
No 64
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.24 E-value=1e-05 Score=73.97 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=53.1
Q ss_pred cccceeeEEE-EecCCch---HHHHHHHh-cCCCCcEEEEEecCCCCChHH---H-HHH----h--cCCCEEEEeccccc
Q psy7063 58 SKLTLKNVLF-REDCNAD---ELIDVINA-NRVYLPCIYAYNKIDQISIEE---V-DRI----A--RQPNSVVVSCNMKL 122 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d---d~~~~l~~-~~~~kP~IlV~NKiDl~~~e~---l-~~l----~--~~~~~vpISA~~~~ 122 (188)
..+.+||+++ ++|++.. .....+.. ....+|+|+|+||+|+...+. + ..+ . .+.+++++||++|.
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~ 368 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGR 368 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCC
Confidence 3578999998 8897632 11111211 224689999999999975321 1 111 1 22468999999999
Q ss_pred cHHHHHHHHHHhcc
Q psy7063 123 NLDYLLDIIWLYLS 136 (188)
Q Consensus 123 gld~L~~~I~~~L~ 136 (188)
|+++|.+.|.+.+.
T Consensus 369 gv~~lf~~i~~~~~ 382 (472)
T PRK03003 369 AVDKLVPALETALE 382 (472)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999988887653
No 65
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.23 E-value=6.2e-06 Score=63.23 Aligned_cols=78 Identities=12% Similarity=0.084 Sum_probs=52.5
Q ss_pred cccceeeEEE-EecCCchHHHH-------HHHhcCCCCcEEEEEecCCCCChHH-----HHHHh-cC-CCEEEEeccccc
Q psy7063 58 SKLTLKNVLF-REDCNADELID-------VINANRVYLPCIYAYNKIDQISIEE-----VDRIA-RQ-PNSVVVSCNMKL 122 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~~~-------~l~~~~~~kP~IlV~NKiDl~~~e~-----l~~l~-~~-~~~vpISA~~~~ 122 (188)
..+.+||+++ +.|.+..+-.+ .+.......|+++|+||+|+.+..+ ...+. .+ ...+++||+++.
T Consensus 71 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (164)
T cd04101 71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGV 150 (164)
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 3468999998 88987543211 1111223589999999999864321 12222 22 247899999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|+++|.+.+.+.+
T Consensus 151 gi~~l~~~l~~~~ 163 (164)
T cd04101 151 GYEEPFESLARAF 163 (164)
T ss_pred ChHHHHHHHHHHh
Confidence 9999999888753
No 66
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.23 E-value=1.1e-05 Score=64.34 Aligned_cols=83 Identities=16% Similarity=0.074 Sum_probs=56.3
Q ss_pred ccceeeEEE-EecCCchH----HH---HHHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEeccccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LI---DVINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMKL 122 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~---~~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~~ 122 (188)
.+.+||+++ ++|++..+ +. ..+.. .....|+++|+||+|+... ++...+. .+ ...+++||++|.
T Consensus 70 ~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~ 149 (191)
T cd04112 70 YYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGL 149 (191)
T ss_pred HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 367899987 88987432 11 22222 2236899999999998532 2233332 22 258999999999
Q ss_pred cHHHHHHHHHHhcccceee
Q psy7063 123 NLDYLLDIIWLYLSLIRVY 141 (188)
Q Consensus 123 gld~L~~~I~~~L~~irVY 141 (188)
|+++|.+.|.+.+...++.
T Consensus 150 ~v~~l~~~l~~~~~~~~~~ 168 (191)
T cd04112 150 NVELAFTAVAKELKHRKYE 168 (191)
T ss_pred CHHHHHHHHHHHHHHhccc
Confidence 9999999999887655544
No 67
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.23 E-value=4.5e-06 Score=79.90 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=58.1
Q ss_pred hhhhhcccceeeEEE-EecCCc----h--HHHHHHHhcCCCCcEEEEEecCCCCChH-HHHHHh--cCCCEEEEeccccc
Q psy7063 53 ADTLPSKLTLKNVLF-REDCNA----D--ELIDVINANRVYLPCIYAYNKIDQISIE-EVDRIA--RQPNSVVVSCNMKL 122 (188)
Q Consensus 53 ~~~~~~~i~~ADvvl-~~D~s~----d--d~~~~l~~~~~~kP~IlV~NKiDl~~~e-~l~~l~--~~~~~vpISA~~~~ 122 (188)
...+...+..||++| ++|++. . .+.+.+. ...+|+|+|+||+|+.... ....+. .+...+++||++|.
T Consensus 345 ~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr--~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~ 422 (712)
T PRK09518 345 ASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLR--RAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGR 422 (712)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH--hcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCC
Confidence 333444688999998 889752 1 2333332 3579999999999986432 222222 34467999999999
Q ss_pred cHHHHHHHHHHhcc
Q psy7063 123 NLDYLLDIIWLYLS 136 (188)
Q Consensus 123 gld~L~~~I~~~L~ 136 (188)
|+++|.+.|.+.+.
T Consensus 423 GI~eLl~~i~~~l~ 436 (712)
T PRK09518 423 GVGDLLDEALDSLK 436 (712)
T ss_pred CchHHHHHHHHhcc
Confidence 99999999998874
No 68
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.23 E-value=9.1e-06 Score=64.69 Aligned_cols=76 Identities=14% Similarity=0.005 Sum_probs=50.4
Q ss_pred cceeeEEE-EecCCchH-HH---HHHHh-----cCCCCcEEEEEecCCCCCh---HHHHHHhcCC-------CEEEEecc
Q psy7063 60 LTLKNVLF-REDCNADE-LI---DVINA-----NRVYLPCIYAYNKIDQISI---EEVDRIARQP-------NSVVVSCN 119 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd-~~---~~l~~-----~~~~kP~IlV~NKiDl~~~---e~l~~l~~~~-------~~vpISA~ 119 (188)
+.+||+++ ++|++..+ +. ..+.. .....|+++|+||+|+... +++....... ..+++||+
T Consensus 82 ~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~ 161 (181)
T PLN00223 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCC
Confidence 68899998 88987532 21 11111 1136899999999998643 2332221211 24579999
Q ss_pred ccccHHHHHHHHHHhc
Q psy7063 120 MKLNLDYLLDIIWLYL 135 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L 135 (188)
+|.|++++.+.|.+.+
T Consensus 162 ~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 162 SGEGLYEGLDWLSNNI 177 (181)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999887765
No 69
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.22 E-value=5.9e-06 Score=64.51 Aligned_cols=77 Identities=14% Similarity=0.043 Sum_probs=53.5
Q ss_pred cceeeEEE-EecCCchH--HHHHHHhcCCCCcEEEEEecCCCCCh--HHHHHH-h--cC-CCEEEEeccccccHHHHHHH
Q psy7063 60 LTLKNVLF-REDCNADE--LIDVINANRVYLPCIYAYNKIDQISI--EEVDRI-A--RQ-PNSVVVSCNMKLNLDYLLDI 130 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd--~~~~l~~~~~~kP~IlV~NKiDl~~~--e~l~~l-~--~~-~~~vpISA~~~~gld~L~~~ 130 (188)
+.+||+++ ++|++..+ ....+......+|+++++||+|+... +.+..+ . .+ .+++++||++|.|+++|.+.
T Consensus 62 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~ 141 (158)
T PRK15467 62 LQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDY 141 (158)
T ss_pred HhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHH
Confidence 78999998 78887432 11112212236899999999998643 222222 1 22 36899999999999999999
Q ss_pred HHHhcc
Q psy7063 131 IWLYLS 136 (188)
Q Consensus 131 I~~~L~ 136 (188)
+.+.+.
T Consensus 142 l~~~~~ 147 (158)
T PRK15467 142 LASLTK 147 (158)
T ss_pred HHHhch
Confidence 998875
No 70
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.22 E-value=6.7e-06 Score=63.11 Aligned_cols=75 Identities=13% Similarity=0.048 Sum_probs=49.2
Q ss_pred ccceeeEEE-EecCCchH-H---HHHHH---hcC--CCCcEEEEEecCCCCCh---HHHH-HHh-c-C----CCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNADE-L---IDVIN---ANR--VYLPCIYAYNKIDQISI---EEVD-RIA-R-Q----PNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd-~---~~~l~---~~~--~~kP~IlV~NKiDl~~~---e~l~-~l~-~-~----~~~vpISA 118 (188)
.+..||+++ ++|++... + ...+. ... ..+|+++|+||+|+... +++. .+. . . .+++++||
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSA 142 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeec
Confidence 357899997 88987432 1 12121 111 36899999999998642 2332 221 1 1 13899999
Q ss_pred cccccHHHHHHHHHH
Q psy7063 119 NMKLNLDYLLDIIWL 133 (188)
Q Consensus 119 ~~~~gld~L~~~I~~ 133 (188)
++|.|+++|.+.+.+
T Consensus 143 ~~~~gi~~l~~~l~~ 157 (158)
T cd04151 143 IKGEGLDEGMDWLVN 157 (158)
T ss_pred cCCCCHHHHHHHHhc
Confidence 999999999988764
No 71
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.22 E-value=8.5e-06 Score=65.51 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=52.9
Q ss_pred ccceeeEEE-EecCCchHHH-------HHHHh-----cCCCCcEEEEEecCCCCC-----hHHHHHHh---cCCCEEEEe
Q psy7063 59 KLTLKNVLF-REDCNADELI-------DVINA-----NRVYLPCIYAYNKIDQIS-----IEEVDRIA---RQPNSVVVS 117 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~-------~~l~~-----~~~~kP~IlV~NKiDl~~-----~e~l~~l~---~~~~~vpIS 117 (188)
-+.+||+++ ++|++..+-. +.+.. .....|+++|+||+|+.+ .+++..+. .+..++++|
T Consensus 70 ~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S 149 (201)
T cd04107 70 YYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETS 149 (201)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEe
Confidence 468899997 8898754321 11111 014689999999999862 23333332 223589999
Q ss_pred ccccccHHHHHHHHHHhc
Q psy7063 118 CNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 118 A~~~~gld~L~~~I~~~L 135 (188)
|++|.|++++.+.|.+.+
T Consensus 150 ak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 150 AKEGINIEEAMRFLVKNI 167 (201)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999988765
No 72
>PTZ00099 rab6; Provisional
Probab=98.21 E-value=1.6e-05 Score=63.39 Aligned_cols=80 Identities=16% Similarity=-0.014 Sum_probs=54.1
Q ss_pred cceeeEEE-EecCCchH----HH---HHHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LI---DVINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~---~~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~~g 123 (188)
+++||++| ++|++..+ +. ..+.. .....|+++|+||+|+... ++...+. .+ ...+++||++|.|
T Consensus 50 ~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~n 129 (176)
T PTZ00099 50 IRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHN 129 (176)
T ss_pred hCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 68999998 88987532 11 11211 1235789999999998532 2222221 22 2368899999999
Q ss_pred HHHHHHHHHHhcccce
Q psy7063 124 LDYLLDIIWLYLSLIR 139 (188)
Q Consensus 124 ld~L~~~I~~~L~~ir 139 (188)
++++.+.|.+.+...+
T Consensus 130 V~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 130 IKVLFKKIAAKLPNLD 145 (176)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999887544
No 73
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.21 E-value=3.2e-06 Score=72.47 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=53.9
Q ss_pred ccceeeEEE-EecCCc------hHHHHHHHhcCCCCcEEEEEecCCCCChHHHHHH----hc-CCCEEEEeccccccHHH
Q psy7063 59 KLTLKNVLF-REDCNA------DELIDVINANRVYLPCIYAYNKIDQISIEEVDRI----AR-QPNSVVVSCNMKLNLDY 126 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~------dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~l----~~-~~~~vpISA~~~~gld~ 126 (188)
.+.+||++| +.|+.. .++.+.+ ..+|.++|+||+|+.+.+....+ .. ...++++||+++.|++.
T Consensus 21 ~l~~aDvIL~VvDar~p~~~~~~~l~~~~----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~gi~~ 96 (287)
T PRK09563 21 NLKLVDVVIEVLDARIPLSSENPMIDKII----GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQGVKK 96 (287)
T ss_pred HhhhCCEEEEEEECCCCCCCCChhHHHHh----CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHH
Confidence 588999998 888742 1222322 26899999999999765433222 12 13479999999999999
Q ss_pred HHHHHHHhccc
Q psy7063 127 LLDIIWLYLSL 137 (188)
Q Consensus 127 L~~~I~~~L~~ 137 (188)
|.+.|.+.+..
T Consensus 97 L~~~l~~~l~~ 107 (287)
T PRK09563 97 ILKAAKKLLKE 107 (287)
T ss_pred HHHHHHHHHHH
Confidence 99999888754
No 74
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.20 E-value=5.4e-06 Score=63.77 Aligned_cols=75 Identities=13% Similarity=0.040 Sum_probs=49.0
Q ss_pred ccceeeEEE-EecCCchH-HH---HHHHh-----cCCCCcEEEEEecCCCCCh---HHHHHHh-c--------CCCEEEE
Q psy7063 59 KLTLKNVLF-REDCNADE-LI---DVINA-----NRVYLPCIYAYNKIDQISI---EEVDRIA-R--------QPNSVVV 116 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd-~~---~~l~~-----~~~~kP~IlV~NKiDl~~~---e~l~~l~-~--------~~~~vpI 116 (188)
.+..||+++ ++|.+..+ +. ..+.. .....|+++|+||+|+... +++..+. . ..+++++
T Consensus 70 ~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (167)
T cd04160 70 YYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPV 149 (167)
T ss_pred HhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEe
Confidence 367889887 88987432 11 11111 1136899999999998643 2222221 1 1148999
Q ss_pred eccccccHHHHHHHHHH
Q psy7063 117 SCNMKLNLDYLLDIIWL 133 (188)
Q Consensus 117 SA~~~~gld~L~~~I~~ 133 (188)
||++|.|++++.+.|.+
T Consensus 150 Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 150 SALEGTGVREGIEWLVE 166 (167)
T ss_pred eCCCCcCHHHHHHHHhc
Confidence 99999999999888754
No 75
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.17 E-value=1.4e-05 Score=76.53 Aligned_cols=79 Identities=13% Similarity=0.103 Sum_probs=53.7
Q ss_pred cccceeeEEE-EecCCch---HHHHHHHh-cCCCCcEEEEEecCCCCChHH---HHH-Hh------cCCCEEEEeccccc
Q psy7063 58 SKLTLKNVLF-REDCNAD---ELIDVINA-NRVYLPCIYAYNKIDQISIEE---VDR-IA------RQPNSVVVSCNMKL 122 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d---d~~~~l~~-~~~~kP~IlV~NKiDl~~~e~---l~~-l~------~~~~~vpISA~~~~ 122 (188)
..+..||+++ ++|++.. +....+.. ....+|+|+|+||+|+.+.+. ++. +. .+.+++++||++|.
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~ 607 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGW 607 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCC
Confidence 4578999998 7888632 11111111 224699999999999975432 211 11 12357999999999
Q ss_pred cHHHHHHHHHHhcc
Q psy7063 123 NLDYLLDIIWLYLS 136 (188)
Q Consensus 123 gld~L~~~I~~~L~ 136 (188)
|+++|.+.+.+.+.
T Consensus 608 gv~~L~~~i~~~~~ 621 (712)
T PRK09518 608 HTNRLAPAMQEALE 621 (712)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998887654
No 76
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.17 E-value=1.6e-05 Score=61.23 Aligned_cols=77 Identities=12% Similarity=0.008 Sum_probs=51.7
Q ss_pred ccceeeEEE-EecCCchH----HHHHHHh---cC-CCCcEEEEEecCCCCChH-----HHHHHh-c-CCCEEEEeccccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LIDVINA---NR-VYLPCIYAYNKIDQISIE-----EVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~~l~~---~~-~~kP~IlV~NKiDl~~~e-----~l~~l~-~-~~~~vpISA~~~~ 122 (188)
.+++||.++ +.|++..+ +...+.. .. ...|+++|+||+|+.... +...+. . ..+.+++||++|.
T Consensus 71 ~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (166)
T cd01869 71 YYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNAT 150 (166)
T ss_pred HhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCc
Confidence 367899998 88987532 2222211 11 358999999999986432 222222 1 1258999999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|++++.+.|.+.+
T Consensus 151 ~v~~~~~~i~~~~ 163 (166)
T cd01869 151 NVEQAFMTMAREI 163 (166)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999888765
No 77
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.17 E-value=2.8e-05 Score=59.24 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=49.7
Q ss_pred ccceeeEEE-EecCCch---HHHHHHHh-cCCCCcEEEEEecCCCCCh--HHHH----HHh---c---CCCEEEEecccc
Q psy7063 59 KLTLKNVLF-REDCNAD---ELIDVINA-NRVYLPCIYAYNKIDQISI--EEVD----RIA---R---QPNSVVVSCNMK 121 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d---d~~~~l~~-~~~~kP~IlV~NKiDl~~~--e~l~----~l~---~---~~~~vpISA~~~ 121 (188)
.+..+|+++ ++|++.. .....+.. ....+|+++++||+|+... ...+ .+. . ...++++||+++
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTG 160 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCC
Confidence 357889997 7886522 11111111 1245899999999998754 2222 121 1 235899999999
Q ss_pred ccHHHHHHHHHHh
Q psy7063 122 LNLDYLLDIIWLY 134 (188)
Q Consensus 122 ~gld~L~~~I~~~ 134 (188)
.|++++.+.+...
T Consensus 161 ~~i~~~~~~l~~~ 173 (174)
T cd01895 161 QGVDKLFDAIDEV 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999887654
No 78
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.16 E-value=1.6e-05 Score=62.98 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=52.3
Q ss_pred cccceeeEEE-EecCCchH-H------HHHHHhcCCCCcEEEEEecCCCCChH---------HHHHHh-cC-CCEEEEec
Q psy7063 58 SKLTLKNVLF-REDCNADE-L------IDVINANRVYLPCIYAYNKIDQISIE---------EVDRIA-RQ-PNSVVVSC 118 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd-~------~~~l~~~~~~kP~IlV~NKiDl~~~e---------~l~~l~-~~-~~~vpISA 118 (188)
..+.+||+++ +.|.+..+ + .+.+.......|+++|+||+|+.... ++..+. .+ ..++++||
T Consensus 69 ~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 148 (193)
T cd04118 69 IYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSS 148 (193)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeC
Confidence 3467899997 78886432 1 12222222368999999999986321 122221 11 34789999
Q ss_pred cccccHHHHHHHHHHhc
Q psy7063 119 NMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L 135 (188)
++|.|+++|.+.|.+.+
T Consensus 149 ~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 149 KTGQNVDELFQKVAEDF 165 (193)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998766
No 79
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.16 E-value=1.2e-05 Score=61.85 Aligned_cols=77 Identities=13% Similarity=0.051 Sum_probs=51.3
Q ss_pred ccceeeEEE-EecCCchHHH-------HH-HHhc----CCCCcEEEEEecCCCCC-----hHHHHHHh---cCCCEEEEe
Q psy7063 59 KLTLKNVLF-REDCNADELI-------DV-INAN----RVYLPCIYAYNKIDQIS-----IEEVDRIA---RQPNSVVVS 117 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~-------~~-l~~~----~~~kP~IlV~NKiDl~~-----~e~l~~l~---~~~~~vpIS 117 (188)
.+++||.++ ++|++..+.. .. +... ...+|+++|+||+|+.. .++...+. .+..++++|
T Consensus 69 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 148 (172)
T cd01862 69 FYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETS 148 (172)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEE
Confidence 478899997 7887643211 11 1111 12689999999999972 22333232 224689999
Q ss_pred ccccccHHHHHHHHHHhc
Q psy7063 118 CNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 118 A~~~~gld~L~~~I~~~L 135 (188)
|++|.|++++.+.|.+.+
T Consensus 149 a~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 149 AKEAINVEQAFETIARKA 166 (172)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999888653
No 80
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.15 E-value=2.1e-05 Score=60.90 Aligned_cols=78 Identities=13% Similarity=0.014 Sum_probs=51.9
Q ss_pred cccceeeEEE-EecCCchHH----HHH---HHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNADEL----IDV---INA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~----~~~---l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~ 121 (188)
..+++||+++ +.|++..+- .+. +.. .....|+++|+||+|+... ++...+. .. ...+++||++|
T Consensus 71 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 150 (167)
T cd01867 71 AYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKAN 150 (167)
T ss_pred HHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 3468999997 788864321 111 111 1235899999999998732 1222221 11 24799999999
Q ss_pred ccHHHHHHHHHHhc
Q psy7063 122 LNLDYLLDIIWLYL 135 (188)
Q Consensus 122 ~gld~L~~~I~~~L 135 (188)
.|++++.+.+.+.+
T Consensus 151 ~~v~~~~~~i~~~~ 164 (167)
T cd01867 151 INVEEAFFTLAKDI 164 (167)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999888764
No 81
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.15 E-value=2.2e-05 Score=60.71 Aligned_cols=78 Identities=15% Similarity=0.065 Sum_probs=52.0
Q ss_pred cccceeeEEE-EecCCchH----HHH---HHHhcC-CCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNADE----LID---VINANR-VYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd----~~~---~l~~~~-~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~ 121 (188)
..++++|+++ +.|.+..+ +.+ .+.... ...|+++|+||+|+.+. ++...+. .. ...+++||++|
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKEN 148 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCC
Confidence 3478999997 78876432 111 121111 35899999999998643 2222222 21 24899999999
Q ss_pred ccHHHHHHHHHHhc
Q psy7063 122 LNLDYLLDIIWLYL 135 (188)
Q Consensus 122 ~gld~L~~~I~~~L 135 (188)
.|+++|.+.+.+.+
T Consensus 149 ~gv~~l~~~l~~~~ 162 (165)
T cd01865 149 INVKQVFERLVDII 162 (165)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999988764
No 82
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.15 E-value=1.8e-05 Score=60.35 Aligned_cols=77 Identities=18% Similarity=0.064 Sum_probs=51.2
Q ss_pred ccceeeEEE-EecCCchH----HHHH---HHhcC-CCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LIDV---INANR-VYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~~---l~~~~-~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~ 122 (188)
.+.++|+++ +.|++..+ .... +.... .+.|+++|+||+|+... ++...+. . ....+++||+++.
T Consensus 69 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (161)
T cd01861 69 YIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGH 148 (161)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCC
Confidence 468899997 78887432 1221 11111 25899999999999432 1222222 1 2347999999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|+++|.+.|.+.|
T Consensus 149 ~v~~l~~~i~~~l 161 (161)
T cd01861 149 NVKELFRKIASAL 161 (161)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998754
No 83
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.14 E-value=1.1e-05 Score=61.54 Aligned_cols=74 Identities=18% Similarity=0.060 Sum_probs=48.2
Q ss_pred cceeeEEE-EecCCchH----HHHHHHh---c--CCCCcEEEEEecCCCCC---hHHHHHH---hcCC-----CEEEEec
Q psy7063 60 LTLKNVLF-REDCNADE----LIDVINA---N--RVYLPCIYAYNKIDQIS---IEEVDRI---ARQP-----NSVVVSC 118 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~~l~~---~--~~~kP~IlV~NKiDl~~---~e~l~~l---~~~~-----~~vpISA 118 (188)
+.+||+++ ++|.+... ....+.. . ....|+++|+||+|+.. .+++... ..+. +++++||
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa 144 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSA 144 (160)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEeccc
Confidence 67789887 88987432 1111111 1 13689999999999853 2333211 1111 3788999
Q ss_pred cccccHHHHHHHHHH
Q psy7063 119 NMKLNLDYLLDIIWL 133 (188)
Q Consensus 119 ~~~~gld~L~~~I~~ 133 (188)
++|.|++++.+.|.+
T Consensus 145 ~~~~gv~~~~~~i~~ 159 (160)
T cd04156 145 VTGEGLAEAFRKLAS 159 (160)
T ss_pred ccCCChHHHHHHHhc
Confidence 999999999988753
No 84
>PRK12289 GTPase RsgA; Reviewed
Probab=98.14 E-value=6.5e-06 Score=72.89 Aligned_cols=88 Identities=15% Similarity=0.122 Sum_probs=57.2
Q ss_pred hhcccceeeEEE-EecCCchH----H-HHHHHh-cCCCCcEEEEEecCCCCChHHHHHH----hcC-CCEEEEecccccc
Q psy7063 56 LPSKLTLKNVLF-REDCNADE----L-IDVINA-NRVYLPCIYAYNKIDQISIEEVDRI----ARQ-PNSVVVSCNMKLN 123 (188)
Q Consensus 56 ~~~~i~~ADvvl-~~D~s~dd----~-~~~l~~-~~~~kP~IlV~NKiDl~~~e~l~~l----~~~-~~~vpISA~~~~g 123 (188)
....+.++|+++ ++|++..+ . ...+.. ....+|.++|+||+|+.+.+++..+ ... ..++++||.++.|
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~G 162 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIG 162 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCC
Confidence 334578999987 77765221 1 222221 2246899999999999865433222 221 2589999999999
Q ss_pred HHHHHHHHHHhcccceeeeCCCC
Q psy7063 124 LDYLLDIIWLYLSLIRVYTKKPG 146 (188)
Q Consensus 124 ld~L~~~I~~~L~~irVY~k~~g 146 (188)
+++|.+.+... +.++.-.+|
T Consensus 163 I~eL~~~L~~k---i~v~iG~Sg 182 (352)
T PRK12289 163 LEALLEQLRNK---ITVVAGPSG 182 (352)
T ss_pred HHHHhhhhccc---eEEEEeCCC
Confidence 99999888654 345554444
No 85
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.14 E-value=1.9e-05 Score=59.85 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=49.1
Q ss_pred cceeeEEE-EecCCchH----HH---HHHHh--cCCCCcEEEEEecCCCCCh----HHHHHHh-cC-CCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LI---DVINA--NRVYLPCIYAYNKIDQISI----EEVDRIA-RQ-PNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~---~~l~~--~~~~kP~IlV~NKiDl~~~----e~l~~l~-~~-~~~vpISA~~~~g 123 (188)
+.+||.++ +.|.+..+ +. ..+.. ....+|+++|+||+|+... ++...+. .+ ..++++||++|.|
T Consensus 70 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (162)
T cd04138 70 MRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQG 149 (162)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCC
Confidence 56688776 67766321 11 12211 1236899999999998642 1222222 22 2588999999999
Q ss_pred HHHHHHHHHHhc
Q psy7063 124 LDYLLDIIWLYL 135 (188)
Q Consensus 124 ld~L~~~I~~~L 135 (188)
+++|.+.+.+.+
T Consensus 150 i~~l~~~l~~~~ 161 (162)
T cd04138 150 VEEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 86
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.13 E-value=1.1e-05 Score=61.56 Aligned_cols=76 Identities=17% Similarity=0.106 Sum_probs=50.1
Q ss_pred cceeeEEE-EecCCchH----HH---HHHHh--cCCCCcEEEEEecCCCCChH-----HHHHHh-cC-CCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LI---DVINA--NRVYLPCIYAYNKIDQISIE-----EVDRIA-RQ-PNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~---~~l~~--~~~~kP~IlV~NKiDl~~~e-----~l~~l~-~~-~~~vpISA~~~~ 122 (188)
+.++|.++ ++|++... +. ..+.. .....|+++|+||+|+.... +...+. .+ ...+++||++|.
T Consensus 71 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (164)
T cd04145 71 MRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRL 150 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCC
Confidence 56788886 77876432 11 11211 12368999999999986432 222221 21 358999999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|++++.+.|.+.+
T Consensus 151 ~i~~l~~~l~~~~ 163 (164)
T cd04145 151 NVDKAFHDLVRVI 163 (164)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999988764
No 87
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.12 E-value=1.5e-05 Score=64.55 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=51.6
Q ss_pred ccceeeEEE-EecCCchHHH-------HHHHhc----CCCCcEEEEEecCCCCCh-----HHHHHHh--c-CCCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNADELI-------DVINAN----RVYLPCIYAYNKIDQISI-----EEVDRIA--R-QPNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~-------~~l~~~----~~~kP~IlV~NKiDl~~~-----e~l~~l~--~-~~~~vpISA 118 (188)
.+.+||+++ ++|++..+-. +.+... ...+|+++|+||+|+... +++..+. . ...++++||
T Consensus 77 ~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 156 (198)
T cd04142 77 GLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSA 156 (198)
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecC
Confidence 478999998 8898744211 122211 245899999999999532 2233331 1 235799999
Q ss_pred cccccHHHHHHHHHHh
Q psy7063 119 NMKLNLDYLLDIIWLY 134 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~ 134 (188)
++|.|+++|.+.+.+.
T Consensus 157 k~g~~v~~lf~~i~~~ 172 (198)
T cd04142 157 KYNWHILLLFKELLIS 172 (198)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999998888764
No 88
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.12 E-value=2.8e-05 Score=59.39 Aligned_cols=76 Identities=13% Similarity=0.030 Sum_probs=50.7
Q ss_pred ccceeeEEE-EecCCchH----HHH---HHHh--cCCCCcEEEEEecCCCCCh----HHHHHHh-c-CCCEEEEeccccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LID---VINA--NRVYLPCIYAYNKIDQISI----EEVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~---~l~~--~~~~kP~IlV~NKiDl~~~----e~l~~l~-~-~~~~vpISA~~~~ 122 (188)
.++++|.++ +.|.+..+ +.. .+.. .....|+++|+||+|+... ++...+. . ...++++||++|.
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRD 148 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCC
Confidence 367899997 78877432 111 1111 1246899999999998722 2222222 1 2248999999999
Q ss_pred cHHHHHHHHHHh
Q psy7063 123 NLDYLLDIIWLY 134 (188)
Q Consensus 123 gld~L~~~I~~~ 134 (188)
|++++.+.+.+.
T Consensus 149 gi~~~~~~~~~~ 160 (161)
T cd01863 149 GVQQAFEELVEK 160 (161)
T ss_pred CHHHHHHHHHHh
Confidence 999999988765
No 89
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.12 E-value=1.2e-05 Score=61.45 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=43.3
Q ss_pred ccceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCCChHHHHHH----hc-CCCEEEEecccccc
Q psy7063 59 KLTLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQISIEEVDRI----AR-QPNSVVVSCNMKLN 123 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~l----~~-~~~~vpISA~~~~g 123 (188)
.+.+||+++ +.|++.+ .+.+.+......+|+++|+||+|+.+++.+..+ .. ...++++||.++.+
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA 84 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 488999997 7887521 333444322236999999999999765443222 12 23589999998764
No 90
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.12 E-value=9.5e-06 Score=62.87 Aligned_cols=74 Identities=18% Similarity=-0.006 Sum_probs=48.1
Q ss_pred cceeeEEE-EecCCchH----HHHHHHhc-----CCCCcEEEEEecCCCCCh---HHH-HHHh-c-C----CCEEEEecc
Q psy7063 60 LTLKNVLF-REDCNADE----LIDVINAN-----RVYLPCIYAYNKIDQISI---EEV-DRIA-R-Q----PNSVVVSCN 119 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~~l~~~-----~~~kP~IlV~NKiDl~~~---e~l-~~l~-~-~----~~~vpISA~ 119 (188)
+++||+++ ++|.+..+ ..+.+... ....|+++++||+|+... +++ ..+. . . ..++++||+
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak 144 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCAT 144 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCC
Confidence 68899998 89987432 22222111 125899999999998632 232 2221 1 1 125689999
Q ss_pred ccccHHHHHHHHHH
Q psy7063 120 MKLNLDYLLDIIWL 133 (188)
Q Consensus 120 ~~~gld~L~~~I~~ 133 (188)
+|.|++++.+.|.+
T Consensus 145 ~g~gv~~~~~~l~~ 158 (159)
T cd04150 145 SGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999887754
No 91
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.12 E-value=1.2e-05 Score=61.40 Aligned_cols=76 Identities=16% Similarity=0.069 Sum_probs=50.0
Q ss_pred cceeeEEE-EecCCchH----HH---HHHHhc--CCCCcEEEEEecCCCCChH-----HHHHHh-cC-CCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LI---DVINAN--RVYLPCIYAYNKIDQISIE-----EVDRIA-RQ-PNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~---~~l~~~--~~~kP~IlV~NKiDl~~~e-----~l~~l~-~~-~~~vpISA~~~~ 122 (188)
+++||.++ +.|++..+ +. ..+... ...+|+++|+||+|+.... +...+. .+ .+++++||++|.
T Consensus 70 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (163)
T cd04136 70 IKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKI 149 (163)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCC
Confidence 57788887 77876432 11 122211 1358999999999986421 122222 22 347999999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|+++|.+.+.+.+
T Consensus 150 ~v~~l~~~l~~~~ 162 (163)
T cd04136 150 NVDEVFADLVRQI 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999987654
No 92
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.11 E-value=1.4e-05 Score=63.54 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=57.9
Q ss_pred ccceeeEEE-EecCCchHHHH--------HHHhcCCCCcEEEEEecCCCCCh---------------HHHHHHh-cC--C
Q psy7063 59 KLTLKNVLF-REDCNADELID--------VINANRVYLPCIYAYNKIDQISI---------------EEVDRIA-RQ--P 111 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~~--------~l~~~~~~kP~IlV~NKiDl~~~---------------e~l~~l~-~~--~ 111 (188)
.+.+||+++ +.|++..+..+ .+.......|+++|+||+|+.+. ++...+. .+ .
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence 367888887 67776432211 12112236999999999998431 1111111 22 3
Q ss_pred CEEEEeccccccHHHHHHHHHHhcccceeeeCCCCCC
Q psy7063 112 NSVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAP 148 (188)
Q Consensus 112 ~~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~ 148 (188)
+.+.+||++|.|++++.+.+.+.+ .-++++.||..
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~~~--~~~~~~~~~~~ 183 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATRAA--LLVRKSEPGAG 183 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHH--hcccCcccccC
Confidence 588999999999999999998755 45777887754
No 93
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.11 E-value=9.4e-06 Score=63.39 Aligned_cols=74 Identities=15% Similarity=-0.012 Sum_probs=48.9
Q ss_pred cceeeEEE-EecCCchH-H---HHHHHh-----cCCCCcEEEEEecCCCCCh---HHHHHHhc-------CCCEEEEecc
Q psy7063 60 LTLKNVLF-REDCNADE-L---IDVINA-----NRVYLPCIYAYNKIDQISI---EEVDRIAR-------QPNSVVVSCN 119 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd-~---~~~l~~-----~~~~kP~IlV~NKiDl~~~---e~l~~l~~-------~~~~vpISA~ 119 (188)
+.++|+++ ++|++..+ + ...+.. .....|+++|+||+|+... +++..+.. ..+++++||+
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04154 79 FESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAV 158 (173)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCC
Confidence 67899887 88887432 1 111111 1146899999999998642 33332221 1248999999
Q ss_pred ccccHHHHHHHHHH
Q psy7063 120 MKLNLDYLLDIIWL 133 (188)
Q Consensus 120 ~~~gld~L~~~I~~ 133 (188)
+|.|++++.+.+.+
T Consensus 159 ~g~gi~~l~~~l~~ 172 (173)
T cd04154 159 TGEGLLQGIDWLVD 172 (173)
T ss_pred CCcCHHHHHHHHhc
Confidence 99999999887753
No 94
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.11 E-value=1.9e-05 Score=62.18 Aligned_cols=78 Identities=14% Similarity=0.014 Sum_probs=51.6
Q ss_pred cccceeeEEE-EecCCchH----HHHH----HHhcCCCCcEEEEEecCCCCCh---------HHHHHHh---cCCCEEEE
Q psy7063 58 SKLTLKNVLF-REDCNADE----LIDV----INANRVYLPCIYAYNKIDQISI---------EEVDRIA---RQPNSVVV 116 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd----~~~~----l~~~~~~kP~IlV~NKiDl~~~---------e~l~~l~---~~~~~vpI 116 (188)
..+.+||+++ +.|.+..+ +... +.......|+++|+||+|+... ++...+. .....+.+
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 147 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLEC 147 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEc
Confidence 3478999998 78987432 2111 1111236899999999998642 1222222 12257999
Q ss_pred eccccccHHHHHHHHHHhc
Q psy7063 117 SCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 117 SA~~~~gld~L~~~I~~~L 135 (188)
||++|.|++++.+.+.+.+
T Consensus 148 Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 148 SAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999888877654
No 95
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.10 E-value=3.3e-05 Score=60.28 Aligned_cols=79 Identities=10% Similarity=0.037 Sum_probs=52.2
Q ss_pred hcccceeeEEE-EecCCchH----HHH---HHHhcC--CCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecc
Q psy7063 57 PSKLTLKNVLF-REDCNADE----LID---VINANR--VYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCN 119 (188)
Q Consensus 57 ~~~i~~ADvvl-~~D~s~dd----~~~---~l~~~~--~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~ 119 (188)
...+++||+++ +.|++..+ +.. .+.... ...|+++|+||+|+.+. ++...+. .+ .+.+++||+
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 34578999997 88987432 111 121111 25789999999998632 2233232 22 247999999
Q ss_pred ccccHHHHHHHHHHhc
Q psy7063 120 MKLNLDYLLDIIWLYL 135 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L 135 (188)
+|.|+++|.+.|.+.+
T Consensus 161 ~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 161 TGTNVEKAVERLLDLV 176 (180)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999887643
No 96
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.10 E-value=2.9e-05 Score=59.25 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=50.7
Q ss_pred ccceeeEEE-EecCCchHHH-------HHHHhcCCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecccccc
Q psy7063 59 KLTLKNVLF-REDCNADELI-------DVINANRVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMKLN 123 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~-------~~l~~~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~~g 123 (188)
-+++||+++ +.|++..+.. ..+.......|+++|+||+|+... ++...+. .. .+++++||+++.|
T Consensus 71 ~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 150 (162)
T cd04106 71 YYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFN 150 (162)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 467899987 7887643211 112222246899999999998642 2222232 11 2589999999999
Q ss_pred HHHHHHHHHHh
Q psy7063 124 LDYLLDIIWLY 134 (188)
Q Consensus 124 ld~L~~~I~~~ 134 (188)
+++|.+.|.+.
T Consensus 151 v~~l~~~l~~~ 161 (162)
T cd04106 151 VTELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHHh
Confidence 99999888654
No 97
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.10 E-value=1.9e-05 Score=60.53 Aligned_cols=76 Identities=17% Similarity=0.102 Sum_probs=50.0
Q ss_pred cceeeEEE-EecCCchH----HH---HHHHh--cCCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LI---DVINA--NRVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~---~~l~~--~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~~ 122 (188)
+.++|.++ +.|++..+ +. ..+.. ....+|+++|+||+|+.+. +....+. .+ ...+++||++|.
T Consensus 69 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (164)
T smart00173 69 MRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERV 148 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCC
Confidence 56678876 78876432 11 11211 1236899999999998642 1222222 11 358999999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|+++|.+.|.+.+
T Consensus 149 ~i~~l~~~l~~~~ 161 (164)
T smart00173 149 NVDEAFYDLVREI 161 (164)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 98
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.10 E-value=3.5e-05 Score=58.86 Aligned_cols=77 Identities=18% Similarity=0.024 Sum_probs=51.7
Q ss_pred ccceeeEEE-EecCCchH-HH------HHHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccccc
Q psy7063 59 KLTLKNVLF-REDCNADE-LI------DVINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd-~~------~~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~ 122 (188)
.++++|+++ +.|++..+ +. ..+.. .....|+++++||+|+.+. ++...+. . ...++++||++|.
T Consensus 70 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (163)
T cd01860 70 YYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGE 149 (163)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 467889997 78886432 21 11211 1245889999999998632 2222222 1 2348999999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|+++|.+.|.+.+
T Consensus 150 ~v~~l~~~l~~~l 162 (163)
T cd01860 150 NVNELFTEIAKKL 162 (163)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999988775
No 99
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.10 E-value=1.3e-05 Score=71.90 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=56.7
Q ss_pred HhhhhhcccceeeEEE-EecCCc----h--HHHHHHHhcCCCCcEEEEEecCCCCCh-HHHHHHh--cCCCEEEEecccc
Q psy7063 52 EADTLPSKLTLKNVLF-REDCNA----D--ELIDVINANRVYLPCIYAYNKIDQISI-EEVDRIA--RQPNSVVVSCNMK 121 (188)
Q Consensus 52 ~~~~~~~~i~~ADvvl-~~D~s~----d--d~~~~l~~~~~~kP~IlV~NKiDl~~~-e~l~~l~--~~~~~vpISA~~~ 121 (188)
+.......+.+||+++ ++|++. . .+.+.+. ...+|+++|+||+|.... +....+. .+.+++++||++|
T Consensus 70 ~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~--~~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g 147 (435)
T PRK00093 70 IREQAELAIEEADVILFVVDGRAGLTPADEEIAKILR--KSNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHG 147 (435)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH--HcCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCC
Confidence 3333444578999998 788753 1 2233333 246999999999997643 2333333 2346899999999
Q ss_pred ccHHHHHHHHHHhc
Q psy7063 122 LNLDYLLDIIWLYL 135 (188)
Q Consensus 122 ~gld~L~~~I~~~L 135 (188)
.|+++|.+.|.+.+
T Consensus 148 ~gv~~l~~~I~~~~ 161 (435)
T PRK00093 148 RGIGDLLDAILEEL 161 (435)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998844
No 100
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.09 E-value=2.1e-05 Score=64.07 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=52.4
Q ss_pred cceeeEEE-EecCCchHHH-------HHHHhc----CCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEeccc
Q psy7063 60 LTLKNVLF-REDCNADELI-------DVINAN----RVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNM 120 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~-------~~l~~~----~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~ 120 (188)
+++||+++ ++|++..+-. ..+... ....|+++|+||+|+... +....+. .+ ...+++||++
T Consensus 71 ~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAkt 150 (215)
T cd04109 71 IYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKT 150 (215)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCC
Confidence 68999997 8998754221 122211 123578999999998632 1222232 11 2478899999
Q ss_pred cccHHHHHHHHHHhcccc
Q psy7063 121 KLNLDYLLDIIWLYLSLI 138 (188)
Q Consensus 121 ~~gld~L~~~I~~~L~~i 138 (188)
|.|+++|.+.|.+.+.-.
T Consensus 151 g~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 151 GDRVNLLFQQLAAELLGV 168 (215)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999998876543
No 101
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.09 E-value=3.4e-05 Score=59.29 Aligned_cols=78 Identities=12% Similarity=0.011 Sum_probs=50.8
Q ss_pred cccceeeEEE-EecCCchH----HHHH---HHhcC-CCCcEEEEEecCCCCCh-----HHHHHHhc--CCCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNADE----LIDV---INANR-VYLPCIYAYNKIDQISI-----EEVDRIAR--QPNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd----~~~~---l~~~~-~~kP~IlV~NKiDl~~~-----e~l~~l~~--~~~~vpISA~~~ 121 (188)
..+.+|+.++ +.|++..+ +... +.... ...|+++|+||+|+... ++...+.. ....+++||++|
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 150 (165)
T cd01868 71 AYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDG 150 (165)
T ss_pred HHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCC
Confidence 3467888776 88887432 2111 11112 25899999999998642 12222221 124899999999
Q ss_pred ccHHHHHHHHHHhc
Q psy7063 122 LNLDYLLDIIWLYL 135 (188)
Q Consensus 122 ~gld~L~~~I~~~L 135 (188)
.|+++|.+.+.+.+
T Consensus 151 ~~v~~l~~~l~~~i 164 (165)
T cd01868 151 TNVEEAFKQLLTEI 164 (165)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999987654
No 102
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.09 E-value=9.3e-06 Score=62.31 Aligned_cols=76 Identities=17% Similarity=0.027 Sum_probs=50.7
Q ss_pred cceeeEEE-EecCCchH----HHH---HHHhc--CCCCcEEEEEecCCCCChH-----HHHHHh-cC-CCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LID---VINAN--RVYLPCIYAYNKIDQISIE-----EVDRIA-RQ-PNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~---~l~~~--~~~kP~IlV~NKiDl~~~e-----~l~~l~-~~-~~~vpISA~~~~ 122 (188)
+.+||.++ +.|++..+ +.. .+... ...+|+++|+||+|+.... +...+. .+ ..++++||++|.
T Consensus 70 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (163)
T cd04176 70 IKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKT 149 (163)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCC
Confidence 67889887 78887532 222 12111 1468999999999985321 112221 12 247899999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|++++.+.+.+.|
T Consensus 150 ~v~~l~~~l~~~l 162 (163)
T cd04176 150 MVNELFAEIVRQM 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999988765
No 103
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.09 E-value=2.1e-05 Score=61.02 Aligned_cols=76 Identities=18% Similarity=0.113 Sum_probs=51.0
Q ss_pred cceeeEEE-EecCCchHHH--------HHHHhcCCCCcEEEEEecCCCCChH-------HHHHHh----cCCCEEEEecc
Q psy7063 60 LTLKNVLF-REDCNADELI--------DVINANRVYLPCIYAYNKIDQISIE-------EVDRIA----RQPNSVVVSCN 119 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~--------~~l~~~~~~kP~IlV~NKiDl~~~e-------~l~~l~----~~~~~vpISA~ 119 (188)
+..||+++ ++|++..+-. ..+.......|+++|+||+|+.+.. .+..+. ....++++||+
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 147 (166)
T cd01893 68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAK 147 (166)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccc
Confidence 57899987 7887643211 1222223468999999999986432 121111 12358899999
Q ss_pred ccccHHHHHHHHHHhc
Q psy7063 120 MKLNLDYLLDIIWLYL 135 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L 135 (188)
++.|+++|.+.+.+.+
T Consensus 148 ~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 148 TLINVSEVFYYAQKAV 163 (166)
T ss_pred cccCHHHHHHHHHHHh
Confidence 9999999999887754
No 104
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.09 E-value=3.2e-05 Score=58.91 Aligned_cols=77 Identities=12% Similarity=0.048 Sum_probs=51.0
Q ss_pred ccceeeEEE-EecCCchH----HH---HHHHhcC------CCCcEEEEEecCCCCC-----hHHHHHHh-cC-CCEEEEe
Q psy7063 59 KLTLKNVLF-REDCNADE----LI---DVINANR------VYLPCIYAYNKIDQIS-----IEEVDRIA-RQ-PNSVVVS 117 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~---~~l~~~~------~~kP~IlV~NKiDl~~-----~e~l~~l~-~~-~~~vpIS 117 (188)
-+.+||++| +.|++..+ +. ..+.... ...|+++|+||+|+.+ .++...+. .. ...+++|
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 148 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETS 148 (168)
T ss_pred HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEE
Confidence 367899997 88987432 11 1121111 3589999999999862 12222222 21 3489999
Q ss_pred ccccccHHHHHHHHHHhc
Q psy7063 118 CNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 118 A~~~~gld~L~~~I~~~L 135 (188)
|++|.|++++.+.|.+.+
T Consensus 149 a~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 149 ACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999988754
No 105
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.09 E-value=1.9e-05 Score=59.08 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=48.8
Q ss_pred cceeeEEE-EecCCchHHH----HHHHh-----cCCCCcEEEEEecCCCCChHH---H-HHHh--c----CCCEEEEecc
Q psy7063 60 LTLKNVLF-REDCNADELI----DVINA-----NRVYLPCIYAYNKIDQISIEE---V-DRIA--R----QPNSVVVSCN 119 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~----~~l~~-----~~~~kP~IlV~NKiDl~~~e~---l-~~l~--~----~~~~vpISA~ 119 (188)
+..+|+++ ++|++..+.. ..+.. ....+|+++|+||+|+.+... + ..+. . ....+++||+
T Consensus 65 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 144 (159)
T cd04159 65 CRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCK 144 (159)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEec
Confidence 57789987 8888753321 11111 113689999999999864422 1 1111 1 1246899999
Q ss_pred ccccHHHHHHHHHH
Q psy7063 120 MKLNLDYLLDIIWL 133 (188)
Q Consensus 120 ~~~gld~L~~~I~~ 133 (188)
+|.|++++.+.|.+
T Consensus 145 ~~~gi~~l~~~l~~ 158 (159)
T cd04159 145 EKTNIDIVLDWLIK 158 (159)
T ss_pred cCCChHHHHHHHhh
Confidence 99999999998865
No 106
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.08 E-value=2.9e-05 Score=62.30 Aligned_cols=82 Identities=13% Similarity=0.070 Sum_probs=54.8
Q ss_pred ccceeeEEE-EecCCchHHHH-------HHHh-cC-CCCcEEEEEecCCCCCh-HHH-----H-HHh-cC-CCEEEEecc
Q psy7063 59 KLTLKNVLF-REDCNADELID-------VINA-NR-VYLPCIYAYNKIDQISI-EEV-----D-RIA-RQ-PNSVVVSCN 119 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~~-------~l~~-~~-~~kP~IlV~NKiDl~~~-e~l-----~-~l~-~~-~~~vpISA~ 119 (188)
.+.+||+++ ++|++..+-.+ .+.. .. ..+|+|+|+||+|+... ..+ . ... .+ ..++++||+
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 146 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAK 146 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCC
Confidence 468899997 78987542111 1111 11 36999999999998642 211 1 111 22 247899999
Q ss_pred ccccHHHHHHHHHHhccccee
Q psy7063 120 MKLNLDYLLDIIWLYLSLIRV 140 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~~irV 140 (188)
+|.|+++|.+.|.+.+..-..
T Consensus 147 ~g~gv~~l~~~l~~~~~~~~~ 167 (198)
T cd04147 147 DNENVLEVFKELLRQANLPYN 167 (198)
T ss_pred CCCCHHHHHHHHHHHhhcccc
Confidence 999999999999988764444
No 107
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.08 E-value=2.9e-05 Score=65.25 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=52.2
Q ss_pred ccceeeEEE-EecCCchHH-------HHHHHh----------cCCCCcEEEEEecCCCCCh-----HHHHHHhc-C--CC
Q psy7063 59 KLTLKNVLF-REDCNADEL-------IDVINA----------NRVYLPCIYAYNKIDQISI-----EEVDRIAR-Q--PN 112 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~-------~~~l~~----------~~~~kP~IlV~NKiDl~~~-----e~l~~l~~-~--~~ 112 (188)
.+.+||++| +.|++..+- .+.+.. ....+|+|+|+||+|+... +++..+.. . ..
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA 147 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence 367899997 788874321 112211 1136899999999998631 23332221 1 24
Q ss_pred EEEEeccccccHHHHHHHHHHhc
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L 135 (188)
++++||++|.|+++|.+.|.+.+
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999865
No 108
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.08 E-value=1e-05 Score=62.54 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=49.1
Q ss_pred ccceeeEEE-EecCCchHH-------HHHHHhcC----CCCcEEEEEecCCCCChHHH-----HHHh-cC-CCEEEEecc
Q psy7063 59 KLTLKNVLF-REDCNADEL-------IDVINANR----VYLPCIYAYNKIDQISIEEV-----DRIA-RQ-PNSVVVSCN 119 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~-------~~~l~~~~----~~kP~IlV~NKiDl~~~e~l-----~~l~-~~-~~~vpISA~ 119 (188)
.+..||.++ +.|++..+- .+.+.... ...|+++|+||+|+....++ ..+. .+ ..++++||+
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~ 148 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAK 148 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecC
Confidence 356788876 788764321 12222111 35899999999998642211 1111 12 257899999
Q ss_pred ccccHHHHHHHHHHh
Q psy7063 120 MKLNLDYLLDIIWLY 134 (188)
Q Consensus 120 ~~~gld~L~~~I~~~ 134 (188)
+|.|++++.+.|.++
T Consensus 149 ~g~~v~~~f~~l~~~ 163 (165)
T cd04140 149 TNHNVQELFQELLNL 163 (165)
T ss_pred CCCCHHHHHHHHHhc
Confidence 999999999988754
No 109
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.08 E-value=2.4e-05 Score=62.27 Aligned_cols=77 Identities=17% Similarity=-0.028 Sum_probs=49.7
Q ss_pred ccceeeEEE-EecCCchH----HHHHHHh---c--CCCCcEEEEEecCCCCCh---HHHHHHhc---CC----CEEEEec
Q psy7063 59 KLTLKNVLF-REDCNADE----LIDVINA---N--RVYLPCIYAYNKIDQISI---EEVDRIAR---QP----NSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~~l~~---~--~~~kP~IlV~NKiDl~~~---e~l~~l~~---~~----~~vpISA 118 (188)
-+.+||++| ++|++..+ ....+.. . ....|+++|+||.|+... +++..... .. .++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 478899997 88987432 1111211 1 135899999999998642 33322111 11 2457899
Q ss_pred cccccHHHHHHHHHHhc
Q psy7063 119 NMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L 135 (188)
++|.|++++.+.|.+.+
T Consensus 161 ~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANI 177 (182)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999988754
No 110
>PRK13796 GTPase YqeH; Provisional
Probab=98.08 E-value=2.3e-05 Score=69.59 Aligned_cols=91 Identities=19% Similarity=0.104 Sum_probs=57.8
Q ss_pred HHHhhhhhcccceee-EEE-EecCCch--HHHHHHHhcCCCCcEEEEEecCCCCCh----HHHHHH----h---cC--CC
Q psy7063 50 AYEADTLPSKLTLKN-VLF-REDCNAD--ELIDVINANRVYLPCIYAYNKIDQISI----EEVDRI----A---RQ--PN 112 (188)
Q Consensus 50 a~~~~~~~~~i~~AD-vvl-~~D~s~d--d~~~~l~~~~~~kP~IlV~NKiDl~~~----e~l~~l----~---~~--~~ 112 (188)
+|...+.+ +.++| +++ ++|+.+- .....+......+|+++|+||+|+.+. +.+..+ . .. .+
T Consensus 58 ~~~~~l~~--i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~ 135 (365)
T PRK13796 58 DFLKLLNG--IGDSDALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVD 135 (365)
T ss_pred HHHHHHHh--hcccCcEEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCc
Confidence 45555555 55555 555 7886521 223333322236899999999999742 222212 1 11 25
Q ss_pred EEEEeccccccHHHHHHHHHHhcccceeee
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLIRVYT 142 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~irVY~ 142 (188)
++++||+++.|+++|.+.|.+...-.+||-
T Consensus 136 v~~vSAk~g~gI~eL~~~I~~~~~~~~v~v 165 (365)
T PRK13796 136 VVLISAQKGHGIDELLEAIEKYREGRDVYV 165 (365)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 899999999999999999988765445554
No 111
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.07 E-value=3.2e-05 Score=61.47 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=50.2
Q ss_pred cceeeEEE-EecCCchH-HHH---HHH---h--cCCCCcEEEEEecCCCC---ChHHHHHHh---c-----------CCC
Q psy7063 60 LTLKNVLF-REDCNADE-LID---VIN---A--NRVYLPCIYAYNKIDQI---SIEEVDRIA---R-----------QPN 112 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd-~~~---~l~---~--~~~~kP~IlV~NKiDl~---~~e~l~~l~---~-----------~~~ 112 (188)
+.+||.++ ++|++..+ +.. .+. . ....+|+++|+||+|+. +.+++.... . ...
T Consensus 82 ~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~ 161 (184)
T smart00178 82 FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLE 161 (184)
T ss_pred hCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeE
Confidence 57899998 88987543 111 111 1 11368999999999985 334443221 1 113
Q ss_pred EEEEeccccccHHHHHHHHHHh
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~ 134 (188)
++++||++|.|++++.+.|.+.
T Consensus 162 i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 162 VFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEEeecccCCChHHHHHHHHhh
Confidence 7999999999999999988754
No 112
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.07 E-value=4.2e-05 Score=57.90 Aligned_cols=77 Identities=12% Similarity=0.036 Sum_probs=51.5
Q ss_pred ccceeeEEE-EecCCchHHHH-------HHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccccc
Q psy7063 59 KLTLKNVLF-REDCNADELID-------VINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~~-------~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~ 122 (188)
.+.++|.++ ++|.+..+-.. .+.. ....+|+++|+||+|+... +++..+. . ....+++||+++.
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 148 (162)
T cd04123 69 YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGK 148 (162)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 357899997 78887543211 1111 1125899999999998742 1222222 1 2347899999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|++++.+.+.+.+
T Consensus 149 gi~~~~~~l~~~~ 161 (162)
T cd04123 149 GIEELFLSLAKRM 161 (162)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999988754
No 113
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.07 E-value=2.6e-05 Score=60.86 Aligned_cols=77 Identities=13% Similarity=-0.018 Sum_probs=50.0
Q ss_pred cceeeEEE-EecCCchH-H---HHHHHh---c--CCCCcEEEEEecCCCCCh---HHHHHHhc---C-C----CEEEEec
Q psy7063 60 LTLKNVLF-REDCNADE-L---IDVINA---N--RVYLPCIYAYNKIDQISI---EEVDRIAR---Q-P----NSVVVSC 118 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd-~---~~~l~~---~--~~~kP~IlV~NKiDl~~~---e~l~~l~~---~-~----~~vpISA 118 (188)
+.+||.++ ++|.+..+ + ...+.. . ....|+++|+||+|+... +++..+.. . . .++++||
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDA 143 (169)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcC
Confidence 57789997 88987532 1 111111 1 124799999999998632 33332221 1 1 3567899
Q ss_pred cccccHHHHHHHHHHhcc
Q psy7063 119 NMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L~ 136 (188)
++|.|++++.+.|.+.+.
T Consensus 144 ~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 144 RSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999887653
No 114
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.07 E-value=2.4e-05 Score=60.18 Aligned_cols=76 Identities=17% Similarity=0.102 Sum_probs=50.1
Q ss_pred cceeeEEE-EecCCchH----HH---HHHHh--cCCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LI---DVINA--NRVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~---~~l~~--~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~~ 122 (188)
..++|.++ +.|.+... +. ..+.. .....|+++|+||+|+... ++...+. .+ .+++++||++|.
T Consensus 70 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (164)
T cd04175 70 MKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKI 149 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCC
Confidence 56778876 77876322 11 12211 1246899999999998632 2222232 22 358999999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|++++.+.|.+.+
T Consensus 150 ~v~~~~~~l~~~l 162 (164)
T cd04175 150 NVNEIFYDLVRQI 162 (164)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 115
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.07 E-value=2.8e-05 Score=61.35 Aligned_cols=77 Identities=12% Similarity=0.003 Sum_probs=50.2
Q ss_pred cccceeeEEE-EecCCchH-HHH-------HHHhcCCCCcEEEEEecCCCCChH-----------------HHHHHh-cC
Q psy7063 58 SKLTLKNVLF-REDCNADE-LID-------VINANRVYLPCIYAYNKIDQISIE-----------------EVDRIA-RQ 110 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd-~~~-------~l~~~~~~kP~IlV~NKiDl~~~e-----------------~l~~l~-~~ 110 (188)
..+.+||.+| +.|++..+ +.. .+.......|+++|+||+|+.+.. +...+. .+
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 147 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 147 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 3478899997 88887432 111 111122368999999999985321 111121 22
Q ss_pred --CCEEEEeccccccHHHHHHHHHHh
Q psy7063 111 --PNSVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 111 --~~~vpISA~~~~gld~L~~~I~~~ 134 (188)
..++++||++|.|+++|.+.+.+.
T Consensus 148 ~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 148 GAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred CCcEEEEecccccCCHHHHHHHHHHh
Confidence 247899999999999998887653
No 116
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.06 E-value=2.7e-05 Score=59.63 Aligned_cols=77 Identities=25% Similarity=0.343 Sum_probs=51.3
Q ss_pred ccceeeEEE-EecCCch---HHHHHHHh-cCCCCcEEEEEecCCCCCh--HHH-HHHh--------c---CCCEEEEecc
Q psy7063 59 KLTLKNVLF-REDCNAD---ELIDVINA-NRVYLPCIYAYNKIDQISI--EEV-DRIA--------R---QPNSVVVSCN 119 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d---d~~~~l~~-~~~~kP~IlV~NKiDl~~~--e~l-~~l~--------~---~~~~vpISA~ 119 (188)
.+..||+++ ++|++.. +....+.. ....+|+++|+||+|+... +.+ ..+. . ...++++||+
T Consensus 70 ~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (168)
T cd01887 70 GASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAK 149 (168)
T ss_pred HHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecc
Confidence 467899997 7888642 22222211 2246899999999998742 211 1111 0 1258999999
Q ss_pred ccccHHHHHHHHHHhc
Q psy7063 120 MKLNLDYLLDIIWLYL 135 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L 135 (188)
+|.|+++|.+.|.+..
T Consensus 150 ~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 150 TGEGIDDLLEAILLLA 165 (168)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999999988764
No 117
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.06 E-value=4.2e-05 Score=63.46 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=46.9
Q ss_pred ceeeEEE-EecCCc---h---HHHHHHHhcCCCCcEEEEEecCCCCChHHH----HHHh---c-----------------
Q psy7063 61 TLKNVLF-REDCNA---D---ELIDVINANRVYLPCIYAYNKIDQISIEEV----DRIA---R----------------- 109 (188)
Q Consensus 61 ~~ADvvl-~~D~s~---d---d~~~~l~~~~~~kP~IlV~NKiDl~~~e~l----~~l~---~----------------- 109 (188)
..+|+++ ++|++. + .....+. ...+|+++|+||+|+.+.+.+ ..+. .
T Consensus 108 ~~~D~~llVvda~~g~~~~d~~~l~~l~--~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~ 185 (224)
T cd04165 108 YAPDYAMLVVAANAGIIGMTKEHLGLAL--ALNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDV 185 (224)
T ss_pred cCCCEEEEEEECCCCCcHHHHHHHHHHH--HcCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccce
Confidence 3688886 777642 1 1223332 246899999999998765332 1111 1
Q ss_pred -----------CCCEEEEeccccccHHHHHHHHHH
Q psy7063 110 -----------QPNSVVVSCNMKLNLDYLLDIIWL 133 (188)
Q Consensus 110 -----------~~~~vpISA~~~~gld~L~~~I~~ 133 (188)
..+++++||.+|.|+++|.+.|..
T Consensus 186 ~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 186 VLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred eehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 125788999999999999987754
No 118
>PRK13768 GTPase; Provisional
Probab=98.06 E-value=8.4e-05 Score=62.70 Aligned_cols=105 Identities=22% Similarity=0.219 Sum_probs=63.4
Q ss_pred eeEEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCC----chHHHHHHH-----hcCCCCcEEEEEecCCC
Q psy7063 29 KGTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCN----ADELIDVIN-----ANRVYLPCIYAYNKIDQ 98 (188)
Q Consensus 29 ~~~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s----~dd~~~~l~-----~~~~~kP~IlV~NKiDl 98 (188)
...++..|+..+-...+..+..+...+... . +++++ ++|++ ..++..... .....+|+++|+||+|+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~--~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGS--S-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhc--C-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 566777676433221222332233333321 1 78887 88874 223322211 11357999999999998
Q ss_pred CChHHHHHH----h-------------------------------cCCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 99 ISIEEVDRI----A-------------------------------RQPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 99 ~~~e~l~~l----~-------------------------------~~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
.+.++.+.+ . .+..++++||.++.|+++|.+.|.+.|.
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 175 LSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred cCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 854322111 0 1135899999999999999999999885
No 119
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.06 E-value=2e-05 Score=61.42 Aligned_cols=76 Identities=11% Similarity=-0.017 Sum_probs=51.1
Q ss_pred cceeeEEE-EecCCchHHH-------HHHHhcCCCCcEEEEEecCCCCChH---HHHHHh--cCCCEEEEeccccccHHH
Q psy7063 60 LTLKNVLF-REDCNADELI-------DVINANRVYLPCIYAYNKIDQISIE---EVDRIA--RQPNSVVVSCNMKLNLDY 126 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~-------~~l~~~~~~kP~IlV~NKiDl~~~e---~l~~l~--~~~~~vpISA~~~~gld~ 126 (188)
...||+++ +.|.+..+-. ..+......+|+++|+||+|+.... ....+. ...+.+++||++|.|+++
T Consensus 70 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 70 YIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEK 149 (166)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHH
Confidence 56789987 8898743221 1222222369999999999986322 111121 123589999999999999
Q ss_pred HHHHHHHhc
Q psy7063 127 LLDIIWLYL 135 (188)
Q Consensus 127 L~~~I~~~L 135 (188)
+.+.|.+.+
T Consensus 150 ~f~~l~~~~ 158 (166)
T cd00877 150 PFLWLARKL 158 (166)
T ss_pred HHHHHHHHH
Confidence 999988654
No 120
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.05 E-value=4.5e-05 Score=58.90 Aligned_cols=76 Identities=13% Similarity=-0.079 Sum_probs=49.8
Q ss_pred ccceeeEEE-EecCCchH----HHHHHHh----cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LIDVINA----NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~~l~~----~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~ 122 (188)
-+++||.++ +.|.+..+ +...+.. .....|+++|+||+|+... ++...+. . ....+.+||++|.
T Consensus 71 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd04122 71 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGE 150 (166)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 467899997 88987432 2122211 1235799999999998643 2222232 1 1357899999999
Q ss_pred cHHHHHHHHHHh
Q psy7063 123 NLDYLLDIIWLY 134 (188)
Q Consensus 123 gld~L~~~I~~~ 134 (188)
|++++...+...
T Consensus 151 ~i~e~f~~l~~~ 162 (166)
T cd04122 151 NVEDAFLETAKK 162 (166)
T ss_pred CHHHHHHHHHHH
Confidence 999987776654
No 121
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.05 E-value=2.7e-05 Score=60.60 Aligned_cols=77 Identities=23% Similarity=0.245 Sum_probs=51.8
Q ss_pred cceeeEEE-EecCCch---HHHHHHHh-cCCCCcEEEEEecCCCCChHH-------HHH-Hhc---------------CC
Q psy7063 60 LTLKNVLF-REDCNAD---ELIDVINA-NRVYLPCIYAYNKIDQISIEE-------VDR-IAR---------------QP 111 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d---d~~~~l~~-~~~~kP~IlV~NKiDl~~~e~-------l~~-l~~---------------~~ 111 (188)
+.++|.++ ++|++.. ...+.+.. ....+|+++|+||+|+...++ +.. +.. ..
T Consensus 83 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T cd00881 83 LSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLV 162 (189)
T ss_pred HHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcc
Confidence 56899997 7887531 22222211 224699999999999975322 111 111 23
Q ss_pred CEEEEeccccccHHHHHHHHHHhcc
Q psy7063 112 NSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 112 ~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
+++++||++|.|+++|.+.|.+.++
T Consensus 163 ~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 163 PIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred eEEEEecccCcCHHHHHHHHHhhCC
Confidence 5799999999999999999988864
No 122
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.04 E-value=3.8e-05 Score=62.68 Aligned_cols=77 Identities=13% Similarity=0.046 Sum_probs=51.5
Q ss_pred ccceeeEEE-EecCCchHHH-------HHHHhc-CCCCcEEEEEecCCCCChH-----HHHHHh-cC--CCEEEEecccc
Q psy7063 59 KLTLKNVLF-REDCNADELI-------DVINAN-RVYLPCIYAYNKIDQISIE-----EVDRIA-RQ--PNSVVVSCNMK 121 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~-------~~l~~~-~~~kP~IlV~NKiDl~~~e-----~l~~l~-~~--~~~vpISA~~~ 121 (188)
-+++||.++ ++|++..+-. +.+... ....|+++|+||+|+.... +...+. .. ..++.+||++|
T Consensus 69 y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg 148 (202)
T cd04120 69 YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDN 148 (202)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCC
Confidence 378999997 8898854322 122211 2368999999999986322 222222 21 24788999999
Q ss_pred ccHHHHHHHHHHhc
Q psy7063 122 LNLDYLLDIIWLYL 135 (188)
Q Consensus 122 ~gld~L~~~I~~~L 135 (188)
.|++++.+.+.+.+
T Consensus 149 ~gV~e~F~~l~~~~ 162 (202)
T cd04120 149 FNVDEIFLKLVDDI 162 (202)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999888877654
No 123
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.03 E-value=3e-05 Score=60.49 Aligned_cols=75 Identities=13% Similarity=0.026 Sum_probs=49.7
Q ss_pred cccceeeEEE-EecCCchH-HH-------HHHHhcCCCCcEEEEEecCCCCChH-----------------HHHHHh---
Q psy7063 58 SKLTLKNVLF-REDCNADE-LI-------DVINANRVYLPCIYAYNKIDQISIE-----------------EVDRIA--- 108 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd-~~-------~~l~~~~~~kP~IlV~NKiDl~~~e-----------------~l~~l~--- 108 (188)
..+.+||+++ +.|++..+ +. ..+.......|+++|+||+|+.+.. +...+.
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 146 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKI 146 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHh
Confidence 4578999998 78887432 21 1222222368999999999986421 111221
Q ss_pred cCCCEEEEeccccccHHHHHHHHH
Q psy7063 109 RQPNSVVVSCNMKLNLDYLLDIIW 132 (188)
Q Consensus 109 ~~~~~vpISA~~~~gld~L~~~I~ 132 (188)
....++++||++|.|+++|.+.+.
T Consensus 147 ~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 147 GACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 223689999999999999987764
No 124
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=2.9e-05 Score=71.36 Aligned_cols=98 Identities=20% Similarity=0.223 Sum_probs=60.4
Q ss_pred ceeEEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEEEEEecCCCCCh-
Q psy7063 28 SKGTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNA---DELIDVINA-NRVYLPCIYAYNKIDQISI- 101 (188)
Q Consensus 28 ~~~~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~IlV~NKiDl~~~- 101 (188)
|.++|.+.|+ |.+.- .+..-+..=+|+++ ++++++ ++-++.+.. .....|+++++||+|.++.
T Consensus 55 ~~itFiDTPG-------HeAFt----~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~n 123 (509)
T COG0532 55 PGITFIDTPG-------HEAFT----AMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEAN 123 (509)
T ss_pred ceEEEEcCCc-------HHHHH----HHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCC
Confidence 5667776665 22221 12223456688886 677652 333333332 2357999999999999843
Q ss_pred HH-H-HHHh-------cC---CCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 102 EE-V-DRIA-------RQ---PNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 102 e~-l-~~l~-------~~---~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
.+ + .++. .+ -.+||+||++|+|+++|++.|.-..+
T Consensus 124 p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 124 PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 22 1 2222 11 13799999999999999988775433
No 125
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.02 E-value=2.1e-05 Score=61.67 Aligned_cols=75 Identities=16% Similarity=0.003 Sum_probs=48.9
Q ss_pred ccceeeEEE-EecCCchH-HH---HHHHh---c--CCCCcEEEEEecCCCCC---hHHH-HHHh-c----C-CCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNADE-LI---DVINA---N--RVYLPCIYAYNKIDQIS---IEEV-DRIA-R----Q-PNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd-~~---~~l~~---~--~~~kP~IlV~NKiDl~~---~e~l-~~l~-~----~-~~~vpISA 118 (188)
.+.+||+++ ++|.+..+ +. +.+.. . ...+|+++++||+|+.. .+++ +.+. . . ..++++||
T Consensus 79 ~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA 158 (174)
T cd04153 79 YYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCA 158 (174)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEeccc
Confidence 467899997 88987532 11 11111 1 13589999999999864 2333 2221 1 1 13789999
Q ss_pred cccccHHHHHHHHHH
Q psy7063 119 NMKLNLDYLLDIIWL 133 (188)
Q Consensus 119 ~~~~gld~L~~~I~~ 133 (188)
++|.|++++.+.|.+
T Consensus 159 ~~g~gi~e~~~~l~~ 173 (174)
T cd04153 159 LTGEGLPEGLDWIAS 173 (174)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999887753
No 126
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.02 E-value=1.7e-05 Score=71.77 Aligned_cols=75 Identities=16% Similarity=0.124 Sum_probs=53.0
Q ss_pred cccceeeEEE-EecCCchHH------HHHHHhcCCCCcEEEEEecCCCCCh--HHHHHH-------h---cCCCEEEEec
Q psy7063 58 SKLTLKNVLF-REDCNADEL------IDVINANRVYLPCIYAYNKIDQISI--EEVDRI-------A---RQPNSVVVSC 118 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~------~~~l~~~~~~kP~IlV~NKiDl~~~--e~l~~l-------~---~~~~~vpISA 118 (188)
.+|..||+++ +.|++.... ...+ ....+++++|+||+|+... ...+.+ . .+..+++|||
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~ia~~i--~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA 333 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLRIAGLI--EEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISA 333 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHHHHHHH--HHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEe
Confidence 3589999997 899884321 1222 3357999999999998754 112111 1 3457899999
Q ss_pred cccccHHHHHHHHHHh
Q psy7063 119 NMKLNLDYLLDIIWLY 134 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~ 134 (188)
++|.|++.|.+.+.+.
T Consensus 334 ~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 334 LTGQGLDKLFEAIKEI 349 (444)
T ss_pred cCCCChHHHHHHHHHH
Confidence 9999999888777654
No 127
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.02 E-value=4.2e-05 Score=60.96 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=49.8
Q ss_pred cccceeeEEE-EecCCchHH-------HHHHHhc-CCCCcEEEEEecCCCCC----hH--HH----HHHh-cC-CCEEEE
Q psy7063 58 SKLTLKNVLF-REDCNADEL-------IDVINAN-RVYLPCIYAYNKIDQIS----IE--EV----DRIA-RQ-PNSVVV 116 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~-------~~~l~~~-~~~kP~IlV~NKiDl~~----~e--~l----~~l~-~~-~~~vpI 116 (188)
..+.+||+++ ++|++..+- ...+... ....| |+|+||+|+.. .+ .+ ..+. .. ..++++
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~ 146 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFC 146 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEE
Confidence 4578999997 899874422 1222211 22345 78999999852 11 11 1221 11 347999
Q ss_pred eccccccHHHHHHHHHHhc
Q psy7063 117 SCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 117 SA~~~~gld~L~~~I~~~L 135 (188)
||++|.|+++|.+.+.+.+
T Consensus 147 SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 147 STSHSINVQKIFKIVLAKA 165 (182)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999988766
No 128
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.01 E-value=4.3e-05 Score=61.64 Aligned_cols=77 Identities=16% Similarity=0.032 Sum_probs=52.5
Q ss_pred ccceeeEEE-EecCCchH-------HHHHHHhcCCCCcEEEEEecCCCCC-----hHHHHHHh-cC-CCEEEEecccccc
Q psy7063 59 KLTLKNVLF-REDCNADE-------LIDVINANRVYLPCIYAYNKIDQIS-----IEEVDRIA-RQ-PNSVVVSCNMKLN 123 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd-------~~~~l~~~~~~kP~IlV~NKiDl~~-----~e~l~~l~-~~-~~~vpISA~~~~g 123 (188)
-.++||.+| +.|++... ..+.+.......|+|+|+||+|+.. .++...+. .. ...+.+||++|.|
T Consensus 75 ~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~ 154 (189)
T cd04121 75 YSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFN 154 (189)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 368999997 88987432 1222322224689999999999853 22333332 12 2488999999999
Q ss_pred HHHHHHHHHHhc
Q psy7063 124 LDYLLDIIWLYL 135 (188)
Q Consensus 124 ld~L~~~I~~~L 135 (188)
++++.+.|.+.+
T Consensus 155 V~~~F~~l~~~i 166 (189)
T cd04121 155 ITESFTELARIV 166 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 129
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.01 E-value=5e-05 Score=57.72 Aligned_cols=78 Identities=15% Similarity=0.016 Sum_probs=50.4
Q ss_pred ccceeeEEE-EecCCchH----HHH---HHHhc--CCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LID---VINAN--RVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMK 121 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~---~l~~~--~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~ 121 (188)
.+..+|.++ +.|++..+ ... .+... ...+|+++|+||+|+... ++...+. .. .+++++||+++
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (164)
T cd04139 68 YHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTR 147 (164)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCC
Confidence 456777776 67765432 111 22211 246999999999998652 1111221 22 35899999999
Q ss_pred ccHHHHHHHHHHhcc
Q psy7063 122 LNLDYLLDIIWLYLS 136 (188)
Q Consensus 122 ~gld~L~~~I~~~L~ 136 (188)
.|+++|.+.+.+.+.
T Consensus 148 ~gi~~l~~~l~~~~~ 162 (164)
T cd04139 148 QNVEKAFYDLVREIR 162 (164)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987653
No 130
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=98.00 E-value=1.6e-06 Score=57.74 Aligned_cols=43 Identities=37% Similarity=0.604 Sum_probs=34.3
Q ss_pred ceeeeCCCCCCCCCCCcEEeccC--------------CC---CCCCCCcccCCCccccCCCeEEEee
Q psy7063 138 IRVYTKKPGAPPDFDDGLILRKG--------------GT---STKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 138 irVY~k~~g~~~d~~~p~il~~g--------------g~---~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
|+||+ ++|...+ +|.| |+ -|+..||+|+++|+|+|||+|+|++
T Consensus 1 I~v~l-pdG~~~~------~~~g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYL-PDGSIKE------LPEGSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEE-TTSCEEE------EETTBBHHHHHHHHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEEE
T ss_pred CEEEC-CCCCeee------CCCCCCHHHHHHHHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEEC
Confidence 68999 7787643 6777 22 6778999999999999999999986
No 131
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.00 E-value=3.5e-05 Score=69.36 Aligned_cols=78 Identities=22% Similarity=0.162 Sum_probs=51.1
Q ss_pred ccceeeEEE-EecCCc----hHHHHHHHh--cCCCCcEEEEEecCCCCChHHH----HHHh----c----CCCEEEEecc
Q psy7063 59 KLTLKNVLF-REDCNA----DELIDVINA--NRVYLPCIYAYNKIDQISIEEV----DRIA----R----QPNSVVVSCN 119 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~----dd~~~~l~~--~~~~kP~IlV~NKiDl~~~e~l----~~l~----~----~~~~vpISA~ 119 (188)
++..+|+++ ++|++. ....+.+.. ....+|+++|+||+|+.+.++. +.+. . ..+++++||+
T Consensus 105 ~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~ 184 (411)
T PRK04000 105 GAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSAL 184 (411)
T ss_pred HHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECC
Confidence 467789887 888763 221222211 1123578999999999754321 2221 1 1357999999
Q ss_pred ccccHHHHHHHHHHhcc
Q psy7063 120 MKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~ 136 (188)
+|.|+++|.+.|.+.++
T Consensus 185 ~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 185 HKVNIDALIEAIEEEIP 201 (411)
T ss_pred CCcCHHHHHHHHHHhCC
Confidence 99999999999998754
No 132
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.00 E-value=4.4e-05 Score=60.80 Aligned_cols=78 Identities=10% Similarity=0.004 Sum_probs=51.1
Q ss_pred cccceeeEEE-EecCCchH-H-------HHHHHhcCCCCcEEEEEecCCCCChHH-----------------HHHHh-cC
Q psy7063 58 SKLTLKNVLF-REDCNADE-L-------IDVINANRVYLPCIYAYNKIDQISIEE-----------------VDRIA-RQ 110 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd-~-------~~~l~~~~~~kP~IlV~NKiDl~~~e~-----------------l~~l~-~~ 110 (188)
....+||+++ +.|++..+ + ...+.......|+++|+||+|+..... ...+. ..
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 146 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRI 146 (189)
T ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 3467899997 78877432 1 112222224689999999999864321 01111 11
Q ss_pred --CCEEEEeccccccHHHHHHHHHHhc
Q psy7063 111 --PNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 111 --~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
...+.+||++|.|++++.+.+.+.+
T Consensus 147 ~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 147 NALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred CCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 2478899999999999988887765
No 133
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.00 E-value=2.8e-05 Score=61.34 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=50.3
Q ss_pred cccceeeEEE-EecCCchH----HHH----HHHhcCCCCcEEEEEecCCCCChHH-----------------HHHHh-cC
Q psy7063 58 SKLTLKNVLF-REDCNADE----LID----VINANRVYLPCIYAYNKIDQISIEE-----------------VDRIA-RQ 110 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd----~~~----~l~~~~~~kP~IlV~NKiDl~~~e~-----------------l~~l~-~~ 110 (188)
..+++||+++ +.|++..+ +.+ .+.......|+|+|+||+|+...++ ...+. .+
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~ 147 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDL 147 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHh
Confidence 4578999997 78887432 111 1221223689999999999864321 11121 22
Q ss_pred --CCEEEEeccccccHHHHHHHHHH
Q psy7063 111 --PNSVVVSCNMKLNLDYLLDIIWL 133 (188)
Q Consensus 111 --~~~vpISA~~~~gld~L~~~I~~ 133 (188)
..++++||++|.|++++.+.+.+
T Consensus 148 ~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 148 KAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHH
Confidence 24789999999999999888765
No 134
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.99 E-value=4.2e-05 Score=60.89 Aligned_cols=78 Identities=15% Similarity=0.093 Sum_probs=51.1
Q ss_pred ccceeeEEE-EecCCchH----HHH---HHHhc----CCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecc
Q psy7063 59 KLTLKNVLF-REDCNADE----LID---VINAN----RVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCN 119 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~---~l~~~----~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~ 119 (188)
.+..||+++ +.|++..+ +.. .+... ....|+|+|+||+|+... .+...+. .+ ...+++||+
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk 146 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAK 146 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCC
Confidence 367899997 78876432 222 12111 135899999999998532 1222222 12 247999999
Q ss_pred ccccHHHHHHHHHHhcc
Q psy7063 120 MKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~ 136 (188)
+|.|++++.+.+.+.+.
T Consensus 147 ~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 147 TNVNVERAFYTLVRALR 163 (190)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999887653
No 135
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.99 E-value=4.7e-05 Score=71.52 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=54.5
Q ss_pred ccceeeEEE-EecCCc---hHHHHHHHh-cCCCCc-EEEEEecCCCCChHHH-------HHH-hc-----CCCEEEEecc
Q psy7063 59 KLTLKNVLF-REDCNA---DELIDVINA-NRVYLP-CIYAYNKIDQISIEEV-------DRI-AR-----QPNSVVVSCN 119 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP-~IlV~NKiDl~~~e~l-------~~l-~~-----~~~~vpISA~ 119 (188)
++.++|+++ ++|++. .+..+.+.. ....+| .++|+||+|+.+.+.+ ..+ .. ..+++++||+
T Consensus 70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred hhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 578899997 888874 222222211 123567 9999999999865422 111 11 2358999999
Q ss_pred ccccHHHHHHHHHHhcccc
Q psy7063 120 MKLNLDYLLDIIWLYLSLI 138 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~~i 138 (188)
+|.|+++|.+.|.+.+..+
T Consensus 150 tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 150 TGQGIGELKKELKNLLESL 168 (581)
T ss_pred CCCCchhHHHHHHHHHHhC
Confidence 9999999999888776543
No 136
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.98 E-value=8e-05 Score=57.55 Aligned_cols=76 Identities=11% Similarity=-0.059 Sum_probs=49.8
Q ss_pred ccceeeEEE-EecCCchHHH-------HHHHh-c----CCCCcEEEEEecCCCCCh----HHHHHHh-cC--CCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNADELI-------DVINA-N----RVYLPCIYAYNKIDQISI----EEVDRIA-RQ--PNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~-------~~l~~-~----~~~kP~IlV~NKiDl~~~----e~l~~l~-~~--~~~vpISA 118 (188)
-+++||+++ +.|++..+-. ..+.. . ....|+++|+||+|+... +++..+. .+ ..++++||
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 153 (170)
T cd04116 74 FYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSA 153 (170)
T ss_pred HhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEEC
Confidence 467889887 6777643211 11111 1 135799999999998532 2333332 22 35789999
Q ss_pred cccccHHHHHHHHHHh
Q psy7063 119 NMKLNLDYLLDIIWLY 134 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~ 134 (188)
++|.|++++.+.+.+.
T Consensus 154 ~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 154 KDATNVAAAFEEAVRR 169 (170)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999998888754
No 137
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.98 E-value=5e-05 Score=71.76 Aligned_cols=78 Identities=10% Similarity=0.116 Sum_probs=51.9
Q ss_pred ccceeeEEE-EecCCc---hHHHHHHHh-cCCCCc-EEEEEecCCCCChHHH----HHH----hc----CCCEEEEeccc
Q psy7063 59 KLTLKNVLF-REDCNA---DELIDVINA-NRVYLP-CIYAYNKIDQISIEEV----DRI----AR----QPNSVVVSCNM 120 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP-~IlV~NKiDl~~~e~l----~~l----~~----~~~~vpISA~~ 120 (188)
++..+|+++ ++|++. ++..+.+.. ....+| .++|+||+|+.+.+.+ +.+ .. ..+++|+||.+
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~t 150 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATE 150 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 478899997 788763 222222211 123456 5799999999864322 111 11 13589999999
Q ss_pred cccHHHHHHHHHHhcc
Q psy7063 121 KLNLDYLLDIIWLYLS 136 (188)
Q Consensus 121 ~~gld~L~~~I~~~L~ 136 (188)
|.|+++|.+.|.+...
T Consensus 151 G~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 151 GRGIDALREHLLQLPE 166 (614)
T ss_pred CCCCHHHHHHHHHhhc
Confidence 9999999999987654
No 138
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.97 E-value=7.6e-05 Score=57.92 Aligned_cols=76 Identities=16% Similarity=-0.006 Sum_probs=50.6
Q ss_pred cceeeEEE-EecCCchH----HHHHHH---h-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LIDVIN---A-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~~l~---~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~g 123 (188)
+.++|.++ +.|++... +...+. . ...+.|+++|+||+|+... ++...+. . ...++++||+++.|
T Consensus 74 ~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 153 (168)
T cd01866 74 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASN 153 (168)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 57889887 88987432 222221 1 1236899999999998632 2222222 1 23589999999999
Q ss_pred HHHHHHHHHHhc
Q psy7063 124 LDYLLDIIWLYL 135 (188)
Q Consensus 124 ld~L~~~I~~~L 135 (188)
++++...+.+.+
T Consensus 154 i~~~~~~~~~~~ 165 (168)
T cd01866 154 VEEAFINTAKEI 165 (168)
T ss_pred HHHHHHHHHHHH
Confidence 999888877654
No 139
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.97 E-value=3.8e-05 Score=63.57 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=50.2
Q ss_pred cceeeEEE-EecCCchH----HHHHH---H-hcCCCCcEEEEEecCCCCC------------------------hHHHHH
Q psy7063 60 LTLKNVLF-REDCNADE----LIDVI---N-ANRVYLPCIYAYNKIDQIS------------------------IEEVDR 106 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~~l---~-~~~~~kP~IlV~NKiDl~~------------------------~e~l~~ 106 (188)
+.+||++| ++|++..+ +...+ . ......|+|+|+||+|+.. .++...
T Consensus 65 ~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~ 144 (220)
T cd04126 65 CRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKA 144 (220)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHH
Confidence 67899997 88987532 11111 1 1123589999999999864 112222
Q ss_pred Hh-cC---------------CCEEEEeccccccHHHHHHHHHHhc
Q psy7063 107 IA-RQ---------------PNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 107 l~-~~---------------~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
+. +. ...+.+||++|.|++++.+.+.+.+
T Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 145 FYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred HHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 21 11 1478899999999999988888654
No 140
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.97 E-value=4.5e-05 Score=58.17 Aligned_cols=75 Identities=17% Similarity=0.023 Sum_probs=49.4
Q ss_pred ccceeeEEE-EecCCchH-H---HHHHH---h--cCCCCcEEEEEecCCCCChH---HHHHHhc-------CCCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNADE-L---IDVIN---A--NRVYLPCIYAYNKIDQISIE---EVDRIAR-------QPNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd-~---~~~l~---~--~~~~kP~IlV~NKiDl~~~e---~l~~l~~-------~~~~vpISA 118 (188)
.+.++|+++ ++|++..+ + ...+. . .....|+++|+||+|+.... ++..... ..+++++||
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSA 142 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeC
Confidence 357789998 88987542 1 11111 1 12368999999999987532 3321111 124788999
Q ss_pred cccccHHHHHHHHHH
Q psy7063 119 NMKLNLDYLLDIIWL 133 (188)
Q Consensus 119 ~~~~gld~L~~~I~~ 133 (188)
++|.|++++.+.|.+
T Consensus 143 ~~~~gv~~~~~~l~~ 157 (158)
T cd00878 143 VTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCHHHHHHHHhh
Confidence 999999999887754
No 141
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.97 E-value=4.9e-05 Score=57.13 Aligned_cols=78 Identities=24% Similarity=0.249 Sum_probs=51.6
Q ss_pred cccceeeEEE-EecCCch--H-HHHHHHh-cCCCCcEEEEEecCCCC-ChHHHHH----Hh---cCCCEEEEeccccccH
Q psy7063 58 SKLTLKNVLF-REDCNAD--E-LIDVINA-NRVYLPCIYAYNKIDQI-SIEEVDR----IA---RQPNSVVVSCNMKLNL 124 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d--d-~~~~l~~-~~~~kP~IlV~NKiDl~-~~e~l~~----l~---~~~~~vpISA~~~~gl 124 (188)
..+..+|+++ ++|++.. + ....+.. .....|.++|+||+|+. ..+.+.. +. +..+++++||+++.|+
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 3478889987 7777532 1 1111111 12358999999999997 3333322 22 1246899999999999
Q ss_pred HHHHHHHHHhc
Q psy7063 125 DYLLDIIWLYL 135 (188)
Q Consensus 125 d~L~~~I~~~L 135 (188)
++|.+.|.+.|
T Consensus 158 ~~l~~~l~~~~ 168 (168)
T cd04163 158 DELLEEIVKYL 168 (168)
T ss_pred HHHHHHHHhhC
Confidence 99999987654
No 142
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.97 E-value=5.8e-05 Score=59.58 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=50.0
Q ss_pred ccceeeEEE-EecCCchH-H---HH----HHHhc-CCCCcEEEEEecCCCCC---hHHHHHHhc----------------
Q psy7063 59 KLTLKNVLF-REDCNADE-L---ID----VINAN-RVYLPCIYAYNKIDQIS---IEEVDRIAR---------------- 109 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd-~---~~----~l~~~-~~~kP~IlV~NKiDl~~---~e~l~~l~~---------------- 109 (188)
.+..+|.++ ++|.+..+ + .. .+... ....|+++++||+|+.. .+++.....
T Consensus 83 ~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T cd00879 83 YFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSG 162 (190)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccC
Confidence 357788887 78887432 1 11 11111 13589999999999863 233332211
Q ss_pred -C-CCEEEEeccccccHHHHHHHHHHhc
Q psy7063 110 -Q-PNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 110 -~-~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
. ..++++||++|.|++++.+.|.+.+
T Consensus 163 ~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 163 IRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred ceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 0 1368899999999999999887754
No 143
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.97 E-value=4.2e-05 Score=58.87 Aligned_cols=76 Identities=18% Similarity=0.078 Sum_probs=50.6
Q ss_pred ccceeeEEE-EecCCchHH----HH---HHHhc-CCCCcEEEEEecCCCCChHH----H-HHHhc--CCCEEEEeccccc
Q psy7063 59 KLTLKNVLF-REDCNADEL----ID---VINAN-RVYLPCIYAYNKIDQISIEE----V-DRIAR--QPNSVVVSCNMKL 122 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~----~~---~l~~~-~~~kP~IlV~NKiDl~~~e~----l-~~l~~--~~~~vpISA~~~~ 122 (188)
.+..+|+++ ++|.+..+- .. .+... ....|+++|+||+|+....+ . ..+.. ....+++||++|.
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 155 (169)
T cd04114 76 YYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESD 155 (169)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 467899997 788874321 12 12221 23589999999999864322 1 22211 1347899999999
Q ss_pred cHHHHHHHHHHh
Q psy7063 123 NLDYLLDIIWLY 134 (188)
Q Consensus 123 gld~L~~~I~~~ 134 (188)
|++++.+.|.+.
T Consensus 156 gv~~l~~~i~~~ 167 (169)
T cd04114 156 NVEKLFLDLACR 167 (169)
T ss_pred CHHHHHHHHHHH
Confidence 999999998765
No 144
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.96 E-value=3.4e-05 Score=58.38 Aligned_cols=75 Identities=20% Similarity=0.166 Sum_probs=50.5
Q ss_pred ceeeEEE-EecCCchH-HHHHHHh-cCCCCcEEEEEecCCCCChH----HHHHHh-cC-CCEEEEeccccccHHHHHHHH
Q psy7063 61 TLKNVLF-REDCNADE-LIDVINA-NRVYLPCIYAYNKIDQISIE----EVDRIA-RQ-PNSVVVSCNMKLNLDYLLDII 131 (188)
Q Consensus 61 ~~ADvvl-~~D~s~dd-~~~~l~~-~~~~kP~IlV~NKiDl~~~e----~l~~l~-~~-~~~vpISA~~~~gld~L~~~I 131 (188)
..+|+++ ++|++..+ ....+.. ....+|+++|+||+|+.+.. ....+. .+ .+++++||.++.|+++|.+.+
T Consensus 73 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l 152 (158)
T cd01879 73 EKPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAI 152 (158)
T ss_pred CCCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHH
Confidence 5899997 78876322 1111111 22469999999999987432 122222 11 358999999999999999988
Q ss_pred HHhc
Q psy7063 132 WLYL 135 (188)
Q Consensus 132 ~~~L 135 (188)
.+.+
T Consensus 153 ~~~~ 156 (158)
T cd01879 153 AELA 156 (158)
T ss_pred HHHh
Confidence 7754
No 145
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.96 E-value=7e-05 Score=60.20 Aligned_cols=78 Identities=15% Similarity=0.071 Sum_probs=52.4
Q ss_pred ccceeeEEE-EecCCchH----HH---HHHHhcCCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecccccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LI---DVINANRVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMKLN 123 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~---~~l~~~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~~g 123 (188)
-+.+||+++ ++|++..+ +. ..+.......|+++|+||+|+... ++...+. .. ..++++||++|.|
T Consensus 75 ~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~g 154 (199)
T cd04110 75 YYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENIN 154 (199)
T ss_pred HhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcC
Confidence 367889776 88987432 11 112222346899999999998643 2222222 21 3489999999999
Q ss_pred HHHHHHHHHHhcc
Q psy7063 124 LDYLLDIIWLYLS 136 (188)
Q Consensus 124 ld~L~~~I~~~L~ 136 (188)
+++|.+.|.+.+-
T Consensus 155 i~~lf~~l~~~~~ 167 (199)
T cd04110 155 VEEMFNCITELVL 167 (199)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888664
No 146
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.95 E-value=3.2e-05 Score=59.40 Aligned_cols=75 Identities=12% Similarity=0.070 Sum_probs=49.7
Q ss_pred ccceeeEEE-EecCCc-hHHHH-------HHHhcCCCCcEEEEEecCCCCChHH----------------HHHH-h--cC
Q psy7063 59 KLTLKNVLF-REDCNA-DELID-------VINANRVYLPCIYAYNKIDQISIEE----------------VDRI-A--RQ 110 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~-dd~~~-------~l~~~~~~kP~IlV~NKiDl~~~e~----------------l~~l-~--~~ 110 (188)
.+..||+++ +.|.+. +.+.. .+......+|+++|+||+|+..... ...+ . ..
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 147 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA 147 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC
Confidence 357899997 788874 22211 1111223699999999999864321 1111 1 22
Q ss_pred CCEEEEeccccccHHHHHHHHHH
Q psy7063 111 PNSVVVSCNMKLNLDYLLDIIWL 133 (188)
Q Consensus 111 ~~~vpISA~~~~gld~L~~~I~~ 133 (188)
..++++||++|.|+++|.+.|.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 148 IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred eEEEEeecCCCCCHHHHHHHHhh
Confidence 25899999999999999988765
No 147
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.95 E-value=6.8e-05 Score=58.95 Aligned_cols=77 Identities=14% Similarity=0.066 Sum_probs=50.2
Q ss_pred ccceeeEEE-EecCCchH-------HHHHHHhc--CCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecccc
Q psy7063 59 KLTLKNVLF-REDCNADE-------LIDVINAN--RVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMK 121 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd-------~~~~l~~~--~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~ 121 (188)
.+..||.++ +.|++..+ +...+... ....|+++|+||+|+... ++...+. .. ...+++||++|
T Consensus 70 ~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~ 149 (172)
T cd04141 70 YMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALR 149 (172)
T ss_pred HhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCC
Confidence 367788887 78876432 11223221 246899999999998532 2222222 11 24789999999
Q ss_pred ccHHHHHHHHHHhc
Q psy7063 122 LNLDYLLDIIWLYL 135 (188)
Q Consensus 122 ~gld~L~~~I~~~L 135 (188)
.|++++.+.+...+
T Consensus 150 ~~v~~~f~~l~~~~ 163 (172)
T cd04141 150 HYIDDAFHGLVREI 163 (172)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999888877643
No 148
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.94 E-value=8.8e-05 Score=60.23 Aligned_cols=67 Identities=15% Similarity=0.068 Sum_probs=40.6
Q ss_pred cccceeeEEE-EecCCc---hHHHHHHHh-cCCCCc-EEEEEecCCCCChHH-HH----HHh------cC----CCEEEE
Q psy7063 58 SKLTLKNVLF-REDCNA---DELIDVINA-NRVYLP-CIYAYNKIDQISIEE-VD----RIA------RQ----PNSVVV 116 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP-~IlV~NKiDl~~~e~-l~----~l~------~~----~~~vpI 116 (188)
.++..||+++ ++|++. +.....+.. ....+| +|+|+||+|+...++ .+ ++. .+ ..++|+
T Consensus 84 ~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipi 163 (195)
T cd01884 84 TGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRG 163 (195)
T ss_pred HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEe
Confidence 3578899997 788753 121222211 223567 678999999874322 11 111 12 348999
Q ss_pred eccccccH
Q psy7063 117 SCNMKLNL 124 (188)
Q Consensus 117 SA~~~~gl 124 (188)
||.+|.|.
T Consensus 164 Sa~~g~n~ 171 (195)
T cd01884 164 SALKALEG 171 (195)
T ss_pred eCccccCC
Confidence 99999985
No 149
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.94 E-value=4.2e-05 Score=60.93 Aligned_cols=78 Identities=9% Similarity=0.041 Sum_probs=51.7
Q ss_pred cccceeeEEE-EecCCchH-HH-------HHHHhcCCCCcEEEEEecCCCCCh---------------HHHHHHh-cC--
Q psy7063 58 SKLTLKNVLF-REDCNADE-LI-------DVINANRVYLPCIYAYNKIDQISI---------------EEVDRIA-RQ-- 110 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd-~~-------~~l~~~~~~kP~IlV~NKiDl~~~---------------e~l~~l~-~~-- 110 (188)
..+++||.+| +.|++..+ +. ..+.......|+++|+||+|+.+. ++...+. ..
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 147 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA 147 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC
Confidence 3478999997 78887332 11 112212246899999999998532 1222232 22
Q ss_pred CCEEEEeccccccHHHHHHHHHHhc
Q psy7063 111 PNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 111 ~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
...+.+||++|.|++++.+.+.+.+
T Consensus 148 ~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 148 AAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CEEEECCCCcccCHHHHHHHHHHHH
Confidence 2378899999999999998888754
No 150
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.94 E-value=9.2e-05 Score=56.35 Aligned_cols=77 Identities=14% Similarity=0.019 Sum_probs=51.7
Q ss_pred ccceeeEEE-EecCCchH----HHHHHH---h-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LIDVIN---A-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~~l~---~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~ 122 (188)
.+.+||+++ ++|++... +...+. . .....|+++|+||+|+.+. +....+. . ..+++++||.+|.
T Consensus 69 ~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 148 (164)
T smart00175 69 YYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNT 148 (164)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 367899887 78876432 211111 1 1136899999999998642 1222222 1 2358999999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|+++|.+.|.+.+
T Consensus 149 ~i~~l~~~i~~~~ 161 (164)
T smart00175 149 NVEEAFEELAREI 161 (164)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 151
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.93 E-value=8.6e-05 Score=56.04 Aligned_cols=76 Identities=16% Similarity=0.096 Sum_probs=50.8
Q ss_pred ccceeeEEE-EecCCchH----HHH---HHHhc--CCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LID---VINAN--RVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMK 121 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~---~l~~~--~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~ 121 (188)
.+.++|+++ ++|.+..+ ... .+... ....|+++|+||+|+... ++...+. . ..+.+++||+++
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 146 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDN 146 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCC
Confidence 367789887 78876432 111 12111 136999999999998742 1222222 2 236899999999
Q ss_pred ccHHHHHHHHHHh
Q psy7063 122 LNLDYLLDIIWLY 134 (188)
Q Consensus 122 ~gld~L~~~I~~~ 134 (188)
.|+++|.+.|.+.
T Consensus 147 ~~i~~l~~~l~~~ 159 (160)
T cd00876 147 INIDEVFKLLVRE 159 (160)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
No 152
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.93 E-value=5.4e-05 Score=67.97 Aligned_cols=78 Identities=22% Similarity=0.184 Sum_probs=51.4
Q ss_pred ccceeeEEE-EecCCc----hHHHHHHHh--cCCCCcEEEEEecCCCCChHHH----HHHh----c----CCCEEEEecc
Q psy7063 59 KLTLKNVLF-REDCNA----DELIDVINA--NRVYLPCIYAYNKIDQISIEEV----DRIA----R----QPNSVVVSCN 119 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~----dd~~~~l~~--~~~~kP~IlV~NKiDl~~~e~l----~~l~----~----~~~~vpISA~ 119 (188)
++..+|+++ ++|++. +...+.+.. ...-+|+++|+||+|+.+.+.. +.+. . ...++|+||.
T Consensus 100 g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~ 179 (406)
T TIGR03680 100 GAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSAL 179 (406)
T ss_pred HHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECC
Confidence 356789987 888863 222222211 1123678999999999864321 2221 1 1248999999
Q ss_pred ccccHHHHHHHHHHhcc
Q psy7063 120 MKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~ 136 (188)
+|.|+++|.+.|.+.++
T Consensus 180 ~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 180 HNANIDALLEAIEKFIP 196 (406)
T ss_pred CCCChHHHHHHHHHhCC
Confidence 99999999999998654
No 153
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.92 E-value=0.00012 Score=58.02 Aligned_cols=78 Identities=14% Similarity=0.033 Sum_probs=51.4
Q ss_pred cccceeeEEE-EecCCchHH----HHH---HHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNADEL----IDV---INA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~----~~~---l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~ 121 (188)
..+.+||+++ ++|.+..+- ... +.. .....|+++|+||+|+... +....+. . ....+.+||++|
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 147 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQS 147 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 3478899997 788874331 111 111 1235799999999998732 1222222 1 125899999999
Q ss_pred ccHHHHHHHHHHhc
Q psy7063 122 LNLDYLLDIIWLYL 135 (188)
Q Consensus 122 ~gld~L~~~I~~~L 135 (188)
.|++++.+.+.+.+
T Consensus 148 ~~i~~~f~~l~~~~ 161 (188)
T cd04125 148 INVEEAFILLVKLI 161 (188)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999888877765
No 154
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.92 E-value=7e-05 Score=55.36 Aligned_cols=76 Identities=18% Similarity=0.138 Sum_probs=51.1
Q ss_pred ccceeeEEE-EecCCch---HHHH-HHHhcCCCCcEEEEEecCCCCChHHHHHH-------h---cCCCEEEEecccccc
Q psy7063 59 KLTLKNVLF-REDCNAD---ELID-VINANRVYLPCIYAYNKIDQISIEEVDRI-------A---RQPNSVVVSCNMKLN 123 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d---d~~~-~l~~~~~~kP~IlV~NKiDl~~~e~l~~l-------~---~~~~~vpISA~~~~g 123 (188)
.+..+|+++ ++|.+.. .... ........+|.++|+||+|+....+.... . ....++++||+++.|
T Consensus 72 ~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 151 (163)
T cd00880 72 VLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEG 151 (163)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCC
Confidence 357789987 7776522 1111 11112357999999999999865433211 1 234689999999999
Q ss_pred HHHHHHHHHHh
Q psy7063 124 LDYLLDIIWLY 134 (188)
Q Consensus 124 ld~L~~~I~~~ 134 (188)
+++|.+.+.+.
T Consensus 152 v~~l~~~l~~~ 162 (163)
T cd00880 152 IDELREALIEA 162 (163)
T ss_pred HHHHHHHHHhh
Confidence 99999988765
No 155
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.92 E-value=0.00013 Score=63.93 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhhhhhhhccccee-------EEEccC------------------------------------------
Q psy7063 6 KISEIEKEIARTQKNKVLAYCWSKG-------TFQSYT------------------------------------------ 36 (188)
Q Consensus 6 ~i~~~e~e~~~~~~~~~~~~~~~~~-------~~~~~~------------------------------------------ 36 (188)
=|.+|..+|..+.+.|...+.+|-| .+-|||
T Consensus 140 iik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~Qv 219 (346)
T COG1084 140 IIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQV 219 (346)
T ss_pred HHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEE
Confidence 3567888999999999998886653 333444
Q ss_pred ----CccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCc------hHHHHHHHhc--CCCCcEEEEEecCCCCChHH
Q psy7063 37 ----SSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNA------DELIDVINAN--RVYLPCIYAYNKIDQISIEE 103 (188)
Q Consensus 37 ----~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~------dd~~~~l~~~--~~~kP~IlV~NKiDl~~~e~ 103 (188)
+.|+|.+-.-.--|..+.++- -+=+++++ ++|.|. ++.+..+... ....|+++|+||+|....+.
T Consensus 220 IDTPGlLDRPl~ErN~IE~qAi~AL--~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~ 297 (346)
T COG1084 220 IDTPGLLDRPLEERNEIERQAILAL--RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEK 297 (346)
T ss_pred ecCCcccCCChHHhcHHHHHHHHHH--HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhH
Confidence 444444333222222222222 13356666 788763 2222222221 13489999999999986655
Q ss_pred HHHHh-----c-CCCEEEEeccccccHHHHHHHHHHh
Q psy7063 104 VDRIA-----R-QPNSVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 104 l~~l~-----~-~~~~vpISA~~~~gld~L~~~I~~~ 134 (188)
+++.. . ..+.+.+|+..+.+++.+.+.+.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 298 LEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred HHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 44332 1 2346789999999999998888765
No 156
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.91 E-value=4.4e-05 Score=71.88 Aligned_cols=78 Identities=22% Similarity=0.187 Sum_probs=52.9
Q ss_pred ccceeeEEE-EecCCch----HHHHHHHhcCCCCcEEEEEecCCCCCh--HH-HHHHh---cC--CCEEEEeccccccHH
Q psy7063 59 KLTLKNVLF-REDCNAD----ELIDVINANRVYLPCIYAYNKIDQISI--EE-VDRIA---RQ--PNSVVVSCNMKLNLD 125 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d----d~~~~l~~~~~~kP~IlV~NKiDl~~~--e~-l~~l~---~~--~~~vpISA~~~~gld 125 (188)
.+..||.++ ++|++.. .............|+++|+||+|+... +. .+.+. .. .+++++||++|.|++
T Consensus 90 ~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~ 169 (595)
T TIGR01393 90 SLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGIGIE 169 (595)
T ss_pred HHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCCCHH
Confidence 467899997 8898642 221111112246899999999998632 22 12222 22 248999999999999
Q ss_pred HHHHHHHHhcc
Q psy7063 126 YLLDIIWLYLS 136 (188)
Q Consensus 126 ~L~~~I~~~L~ 136 (188)
+|.+.|.+.++
T Consensus 170 ~Lle~I~~~lp 180 (595)
T TIGR01393 170 EILEAIVKRVP 180 (595)
T ss_pred HHHHHHHHhCC
Confidence 99999998774
No 157
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.91 E-value=7.3e-05 Score=57.94 Aligned_cols=77 Identities=13% Similarity=0.056 Sum_probs=50.1
Q ss_pred cccceeeEEE-EecCCch----HHHH----HHHhcCCCCcEEEEEecCCCCChHHH-----------------HHHh---
Q psy7063 58 SKLTLKNVLF-REDCNAD----ELID----VINANRVYLPCIYAYNKIDQISIEEV-----------------DRIA--- 108 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d----d~~~----~l~~~~~~kP~IlV~NKiDl~~~e~l-----------------~~l~--- 108 (188)
..+.++|+++ +.|++.. ++.+ .+......+|+++|+||+|+...... ..+.
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~ 147 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKI 147 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHc
Confidence 3578899997 7787632 2211 11111236899999999998643210 1111
Q ss_pred cCCCEEEEeccccccHHHHHHHHHHh
Q psy7063 109 RQPNSVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 109 ~~~~~vpISA~~~~gld~L~~~I~~~ 134 (188)
...+++++||++|.|+++|.+.|.+.
T Consensus 148 ~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 148 GAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred CCcEEEEeccccCcCHHHHHHHHHHH
Confidence 12257999999999999999988754
No 158
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.91 E-value=2.1e-05 Score=68.78 Aligned_cols=81 Identities=16% Similarity=0.074 Sum_probs=53.4
Q ss_pred ccceeeEEEEecCCchHHHHHHHhcCCCCcEEEEEecCCCCChHH-HHHHh---cCCCEEEEeccccccHHHHHH-HHHH
Q psy7063 59 KLTLKNVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEE-VDRIA---RQPNSVVVSCNMKLNLDYLLD-IIWL 133 (188)
Q Consensus 59 ~i~~ADvvl~~D~s~dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~-l~~l~---~~~~~vpISA~~~~gld~L~~-~I~~ 133 (188)
+...|.+....+.+.+++.+.+. ...+|+|+|+||+|+.+.++ .+.+. .+.+++|+||+.+.++++|.+ .+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~l--lt~KPvI~VlNK~Dl~~~~~~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~ 266 (318)
T cd01899 189 LELPEDLSKWTDEDLLRLARALR--KRSKPMVIAANKADIPDAENNISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIK 266 (318)
T ss_pred CCCCCcccCCCHHHHHHHHHHHH--hcCCcEEEEEEHHHccChHHHHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHH
Confidence 44455543333333344444443 35699999999999875443 23222 345699999999999999998 6999
Q ss_pred hcccceee
Q psy7063 134 YLSLIRVY 141 (188)
Q Consensus 134 ~L~~irVY 141 (188)
+|+.-.-|
T Consensus 267 ~lPe~~~f 274 (318)
T cd01899 267 YDPGDSDF 274 (318)
T ss_pred hCCCCCCc
Confidence 99744333
No 159
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.90 E-value=6.5e-05 Score=58.11 Aligned_cols=75 Identities=13% Similarity=0.058 Sum_probs=47.9
Q ss_pred ccceeeEEE-EecCCchH-H---HHHH----Hh-cCCCCcEEEEEecCCCCChH---HHHHHhcC-------CCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNADE-L---IDVI----NA-NRVYLPCIYAYNKIDQISIE---EVDRIARQ-------PNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd-~---~~~l----~~-~~~~kP~IlV~NKiDl~~~e---~l~~l~~~-------~~~vpISA 118 (188)
.+..+|+++ ++|++... + ...+ .. ....+|+++++||+|+.... ++...... ..++++||
T Consensus 78 ~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 157 (173)
T cd04155 78 YFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSA 157 (173)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeEC
Confidence 357888887 78887432 1 1111 11 12368999999999986532 22111111 13678999
Q ss_pred cccccHHHHHHHHHH
Q psy7063 119 NMKLNLDYLLDIIWL 133 (188)
Q Consensus 119 ~~~~gld~L~~~I~~ 133 (188)
++|.|++++.+.|.+
T Consensus 158 ~~~~gi~~~~~~l~~ 172 (173)
T cd04155 158 KTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999888754
No 160
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.90 E-value=9.5e-05 Score=59.15 Aligned_cols=78 Identities=9% Similarity=-0.037 Sum_probs=51.7
Q ss_pred cccceeeEEE-EecCCchH----HHH----HHHhcCCCCcEEEEEecCCCCChH-----------------HHHHHh-cC
Q psy7063 58 SKLTLKNVLF-REDCNADE----LID----VINANRVYLPCIYAYNKIDQISIE-----------------EVDRIA-RQ 110 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd----~~~----~l~~~~~~kP~IlV~NKiDl~~~e-----------------~l~~l~-~~ 110 (188)
.-+++||+++ +.|++..+ +.. .+.......|+++|+||.|+.... +...+. ..
T Consensus 70 ~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 149 (191)
T cd01875 70 LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQI 149 (191)
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 3478899997 78887433 211 111112468999999999985321 111121 12
Q ss_pred --CCEEEEeccccccHHHHHHHHHHhc
Q psy7063 111 --PNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 111 --~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
...+.+||++|.|++++.+.+.+.+
T Consensus 150 ~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 150 HAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 2478899999999999999888765
No 161
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.89 E-value=8.4e-05 Score=58.29 Aligned_cols=78 Identities=12% Similarity=-0.081 Sum_probs=50.5
Q ss_pred cccceeeEEE-EecCCchH-H---HH---HHHhcC--CCCcEEEEEecCCCCChHH-------HHHHh-cC-CCEEEEec
Q psy7063 58 SKLTLKNVLF-REDCNADE-L---ID---VINANR--VYLPCIYAYNKIDQISIEE-------VDRIA-RQ-PNSVVVSC 118 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd-~---~~---~l~~~~--~~kP~IlV~NKiDl~~~e~-------l~~l~-~~-~~~vpISA 118 (188)
..+++||+++ +.|++..+ + .. .+.... ...|+++|+||+|+.+... ...+. .+ .+.+.+||
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 147 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSA 147 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEEC
Confidence 3478999997 78986432 1 11 111111 2357899999999854211 11221 22 24789999
Q ss_pred cccccHHHHHHHHHHhc
Q psy7063 119 NMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L 135 (188)
++|.|+++|.+.|.+.+
T Consensus 148 ~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 148 LSGENVREFFFRVAALT 164 (170)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999888765
No 162
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.89 E-value=0.00012 Score=54.59 Aligned_cols=75 Identities=20% Similarity=0.075 Sum_probs=50.0
Q ss_pred cccceeeEEE-EecCCchHH----HH---HHHhcC-CCCcEEEEEecCCCC-Ch----HHHHHHh-c-CCCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNADEL----ID---VINANR-VYLPCIYAYNKIDQI-SI----EEVDRIA-R-QPNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~----~~---~l~~~~-~~kP~IlV~NKiDl~-~~----e~l~~l~-~-~~~~vpISA~~~ 121 (188)
..+.++|+++ ++|.+..+- .. .+.... ...|+++++||+|+. .. +++..+. . ..+++.+||+++
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 147 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTG 147 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCC
Confidence 4467899997 888875321 11 111111 358999999999995 21 2233232 1 245899999999
Q ss_pred ccHHHHHHHHH
Q psy7063 122 LNLDYLLDIIW 132 (188)
Q Consensus 122 ~gld~L~~~I~ 132 (188)
.|++++.+.|.
T Consensus 148 ~~i~~~~~~i~ 158 (159)
T cd00154 148 ENVEELFQSLA 158 (159)
T ss_pred CCHHHHHHHHh
Confidence 99999998875
No 163
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.88 E-value=6.6e-05 Score=70.79 Aligned_cols=78 Identities=23% Similarity=0.210 Sum_probs=52.6
Q ss_pred ccceeeEEE-EecCCch----HHHHHHHhcCCCCcEEEEEecCCCCCh--HH-HHHHh---cC--CCEEEEeccccccHH
Q psy7063 59 KLTLKNVLF-REDCNAD----ELIDVINANRVYLPCIYAYNKIDQISI--EE-VDRIA---RQ--PNSVVVSCNMKLNLD 125 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d----d~~~~l~~~~~~kP~IlV~NKiDl~~~--e~-l~~l~---~~--~~~vpISA~~~~gld 125 (188)
.+..||.+| ++|++.. +............|+|+|+||+|+... +. .+.+. .. .+++++||++|.|++
T Consensus 94 sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~ 173 (600)
T PRK05433 94 SLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAKTGIGIE 173 (600)
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecCCCCCHH
Confidence 366788887 8888632 221111112246899999999998632 21 12222 22 248999999999999
Q ss_pred HHHHHHHHhcc
Q psy7063 126 YLLDIIWLYLS 136 (188)
Q Consensus 126 ~L~~~I~~~L~ 136 (188)
+|++.|.+.++
T Consensus 174 ~Ll~~I~~~lp 184 (600)
T PRK05433 174 EVLEAIVERIP 184 (600)
T ss_pred HHHHHHHHhCc
Confidence 99999998875
No 164
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.88 E-value=7.6e-05 Score=57.79 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=49.8
Q ss_pred cccceeeEEE-EecCCchH----H----HHHHHhcCCCCcEEEEEecCCCCChHH-----------------HHHHh-cC
Q psy7063 58 SKLTLKNVLF-REDCNADE----L----IDVINANRVYLPCIYAYNKIDQISIEE-----------------VDRIA-RQ 110 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd----~----~~~l~~~~~~kP~IlV~NKiDl~~~e~-----------------l~~l~-~~ 110 (188)
....++|+++ +.|.+..+ + ...+......+|+++|+||+|+.+... ...+. .+
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 146 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI 146 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 3467889887 67876432 1 112222234699999999999853211 11111 12
Q ss_pred --CCEEEEeccccccHHHHHHHHHHh
Q psy7063 111 --PNSVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 111 --~~~vpISA~~~~gld~L~~~I~~~ 134 (188)
...+.+||++|.|+++|.+.+.+.
T Consensus 147 ~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 147 GAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred CCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 247889999999999999887754
No 165
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.88 E-value=4.4e-05 Score=67.62 Aligned_cols=91 Identities=20% Similarity=0.098 Sum_probs=56.0
Q ss_pred HHhhhhhcccceeeEEE-EecCCchH--HHHHHHhcCCCCcEEEEEecCCCCChH----HHHH-----Hhc--C--CCEE
Q psy7063 51 YEADTLPSKLTLKNVLF-REDCNADE--LIDVINANRVYLPCIYAYNKIDQISIE----EVDR-----IAR--Q--PNSV 114 (188)
Q Consensus 51 ~~~~~~~~~i~~ADvvl-~~D~s~dd--~~~~l~~~~~~kP~IlV~NKiDl~~~e----~l~~-----l~~--~--~~~v 114 (188)
|...+.. -...+++++ ++|++..+ ....+......+|+++|+||+|+.+.+ .+.. +.. + .+++
T Consensus 53 f~~~l~~-~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~ 131 (360)
T TIGR03597 53 FLNLLNS-LGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDII 131 (360)
T ss_pred HHHHHhh-cccCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEE
Confidence 3343333 245777887 88875221 222222222368999999999987431 2221 111 2 2588
Q ss_pred EEeccccccHHHHHHHHHHhcccceeee
Q psy7063 115 VVSCNMKLNLDYLLDIIWLYLSLIRVYT 142 (188)
Q Consensus 115 pISA~~~~gld~L~~~I~~~L~~irVY~ 142 (188)
++||+++.|+++|.+.|.++..-..||-
T Consensus 132 ~vSAk~g~gv~eL~~~l~~~~~~~~v~~ 159 (360)
T TIGR03597 132 LVSAKKGNGIDELLDKIKKARNKKDVYV 159 (360)
T ss_pred EecCCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 9999999999999999987644334443
No 166
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.88 E-value=8.4e-05 Score=61.13 Aligned_cols=76 Identities=21% Similarity=0.086 Sum_probs=51.9
Q ss_pred eeeEEE-EecCCchH-------HHHHHHhc--CCCCcEEEEEecCCCCChH-----HHHHHh-cC-CCEEEEeccccccH
Q psy7063 62 LKNVLF-REDCNADE-------LIDVINAN--RVYLPCIYAYNKIDQISIE-----EVDRIA-RQ-PNSVVVSCNMKLNL 124 (188)
Q Consensus 62 ~ADvvl-~~D~s~dd-------~~~~l~~~--~~~kP~IlV~NKiDl~~~e-----~l~~l~-~~-~~~vpISA~~~~gl 124 (188)
+||+++ ++|++..+ ....+... ...+|+|+|+||+|+.... +...+. .+ ..++++||+++.|+
T Consensus 72 ~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv 151 (221)
T cd04148 72 QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNV 151 (221)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 899997 78887432 12222221 1468999999999986432 122222 22 25789999999999
Q ss_pred HHHHHHHHHhccc
Q psy7063 125 DYLLDIIWLYLSL 137 (188)
Q Consensus 125 d~L~~~I~~~L~~ 137 (188)
++|.+.|.+.+..
T Consensus 152 ~~l~~~l~~~~~~ 164 (221)
T cd04148 152 DELLEGIVRQIRL 164 (221)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887754
No 167
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.87 E-value=3.6e-05 Score=67.71 Aligned_cols=80 Identities=23% Similarity=0.193 Sum_probs=53.1
Q ss_pred cceeeEEE-EecCCchH-------HHHHHHh------cCCCCcEEEEEecCCCC-ChHHHHHHh----c-CC--CEEEEe
Q psy7063 60 LTLKNVLF-REDCNADE-------LIDVINA------NRVYLPCIYAYNKIDQI-SIEEVDRIA----R-QP--NSVVVS 117 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd-------~~~~l~~------~~~~kP~IlV~NKiDl~-~~e~l~~l~----~-~~--~~vpIS 117 (188)
|..+-+++ ++|++..+ +.....+ ....||.++|+||+|+. +.++++.+. . .. ..++||
T Consensus 235 IERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~IS 314 (369)
T COG0536 235 IERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLIS 314 (369)
T ss_pred HHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeee
Confidence 55667777 88877322 1111111 12469999999999965 555554332 1 11 123399
Q ss_pred ccccccHHHHHHHHHHhcccce
Q psy7063 118 CNMKLNLDYLLDIIWLYLSLIR 139 (188)
Q Consensus 118 A~~~~gld~L~~~I~~~L~~ir 139 (188)
|.+++|++.|...+++.+...+
T Consensus 315 a~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 315 ALTREGLDELLRALAELLEETK 336 (369)
T ss_pred hhcccCHHHHHHHHHHHHHHhh
Confidence 9999999999999999988665
No 168
>PTZ00369 Ras-like protein; Provisional
Probab=97.86 E-value=8.7e-05 Score=59.03 Aligned_cols=76 Identities=16% Similarity=0.084 Sum_probs=50.1
Q ss_pred cceeeEEE-EecCCchH----HHH---HHHh--cCCCCcEEEEEecCCCCChH-----HHHHHh-cC-CCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LID---VINA--NRVYLPCIYAYNKIDQISIE-----EVDRIA-RQ-PNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~---~l~~--~~~~kP~IlV~NKiDl~~~e-----~l~~l~-~~-~~~vpISA~~~~ 122 (188)
+..+|+++ +.|.+..+ +.. .+.. .....|+++|+||+|+.... +...+. .+ .+++.+||++|.
T Consensus 74 ~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~ 153 (189)
T PTZ00369 74 MRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRV 153 (189)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCC
Confidence 56789987 78887543 221 1111 11367999999999985321 122221 22 247999999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|++++.+.|.+.+
T Consensus 154 gi~~~~~~l~~~l 166 (189)
T PTZ00369 154 NVDEAFYELVREI 166 (189)
T ss_pred CHHHHHHHHHHHH
Confidence 9999998887765
No 169
>KOG1423|consensus
Probab=97.85 E-value=7.9e-05 Score=64.95 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=51.5
Q ss_pred cccceeeEEE-EecCCc------hHHHHHHHhcCCCCcEEEEEecCCCCChHH-H------------H--HH--h-----
Q psy7063 58 SKLTLKNVLF-REDCNA------DELIDVINANRVYLPCIYAYNKIDQISIEE-V------------D--RI--A----- 108 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~------dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~-l------------~--~l--~----- 108 (188)
-++.+||+++ +.|++. ..+.+-+.. -...|.|+|.||+|...... + . .+ +
T Consensus 151 ~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~-ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~ 229 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATRTPLHPRVLHMLEE-YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTD 229 (379)
T ss_pred HHHhhCCEEEEEEeccCCcCccChHHHHHHHH-HhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhcc
Confidence 3689999998 789872 233333322 24589999999999864321 1 1 00 0
Q ss_pred -c-------------CCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 109 -R-------------QPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 109 -~-------------~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
+ |..+|++||.+|.|+++|.+.+...+
T Consensus 230 ~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 230 VPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred CCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 1 33489999999999988777766554
No 170
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.84 E-value=4.9e-05 Score=65.24 Aligned_cols=74 Identities=18% Similarity=-0.004 Sum_probs=49.3
Q ss_pred cceeeEEE-EecCCch-----HHHHHHHh-cCCCCcEEEEEecCCCCChHH-HH--HH-hc-CCCEEEEeccccccHHHH
Q psy7063 60 LTLKNVLF-REDCNAD-----ELIDVINA-NRVYLPCIYAYNKIDQISIEE-VD--RI-AR-QPNSVVVSCNMKLNLDYL 127 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d-----d~~~~l~~-~~~~kP~IlV~NKiDl~~~e~-l~--~l-~~-~~~~vpISA~~~~gld~L 127 (188)
+.++|+++ +.|++.+ .+...+.. ....+|.++|+||+|+.+..+ .. .. .. ..+++++||+++.|+++|
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L 155 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDEL 155 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHH
Confidence 78999987 7776532 22222211 224689999999999975432 11 11 12 235899999999999998
Q ss_pred HHHHHH
Q psy7063 128 LDIIWL 133 (188)
Q Consensus 128 ~~~I~~ 133 (188)
...|..
T Consensus 156 ~~~L~~ 161 (287)
T cd01854 156 REYLKG 161 (287)
T ss_pred Hhhhcc
Confidence 887764
No 171
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.84 E-value=4.2e-05 Score=64.29 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=53.3
Q ss_pred ccceeeEEE-EecCCchH-----HHHHHHh-cCCCCcEEEEEecCCCCChHHH-----HHHhcC-CCEEEEeccccccHH
Q psy7063 59 KLTLKNVLF-REDCNADE-----LIDVINA-NRVYLPCIYAYNKIDQISIEEV-----DRIARQ-PNSVVVSCNMKLNLD 125 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd-----~~~~l~~-~~~~kP~IlV~NKiDl~~~e~l-----~~l~~~-~~~vpISA~~~~gld 125 (188)
-+.++|.++ +.|++.++ +...+.. ....+|.++|+||+|+.+.... ..+... ..++.+||++|.|++
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~ 112 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLK 112 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHH
Confidence 478899986 77766322 2122211 1246899999999999743222 222222 248899999999999
Q ss_pred HHHHHHHHhcccceeeeCCCC
Q psy7063 126 YLLDIIWLYLSLIRVYTKKPG 146 (188)
Q Consensus 126 ~L~~~I~~~L~~irVY~k~~g 146 (188)
+|.+.+.+ .+.++.-.+|
T Consensus 113 eLf~~l~~---~~~~~~G~sg 130 (245)
T TIGR00157 113 ELIEALQN---RISVFAGQSG 130 (245)
T ss_pred HHHhhhcC---CEEEEECCCC
Confidence 98887764 3445554333
No 172
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.82 E-value=9e-05 Score=73.62 Aligned_cols=97 Identities=22% Similarity=0.172 Sum_probs=58.2
Q ss_pred cceeEEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEEEEEecCCCCCh
Q psy7063 27 WSKGTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNA---DELIDVINA-NRVYLPCIYAYNKIDQISI 101 (188)
Q Consensus 27 ~~~~~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~IlV~NKiDl~~~ 101 (188)
+|.+.|++.|+. .... .+...+...||+++ ++|++. .+..+.+.. ....+|+++|+||+|+.+.
T Consensus 525 ~p~i~fiDTPGh-------e~F~----~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~ 593 (1049)
T PRK14845 525 IPGLLFIDTPGH-------EAFT----SLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPG 593 (1049)
T ss_pred cCcEEEEECCCc-------HHHH----HHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccc
Confidence 667778876661 1111 11123467799997 788763 222222211 2246899999999998631
Q ss_pred -----------------H----HHH----H----Hh----------------cCCCEEEEeccccccHHHHHHHHHHh
Q psy7063 102 -----------------E----EVD----R----IA----------------RQPNSVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 102 -----------------e----~l~----~----l~----------------~~~~~vpISA~~~~gld~L~~~I~~~ 134 (188)
+ +++ . +. ....+||+||++|.|+++|++.|...
T Consensus 594 ~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 594 WNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred cccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 0 010 0 11 11247999999999999999888643
No 173
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.82 E-value=0.00019 Score=54.83 Aligned_cols=76 Identities=16% Similarity=-0.076 Sum_probs=50.6
Q ss_pred ccceeeEEE-EecCCchH----HHHH---HHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEeccccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LIDV---INA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMKL 122 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~~---l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~~ 122 (188)
.+.++|.++ +.|++..+ +... +.. .....|+++|+||+|+... ++...+. .. ...+.+||+++.
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (161)
T cd04113 69 YYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGE 148 (161)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 367899997 88887532 1111 111 1236899999999998632 1222222 22 358999999999
Q ss_pred cHHHHHHHHHHh
Q psy7063 123 NLDYLLDIIWLY 134 (188)
Q Consensus 123 gld~L~~~I~~~ 134 (188)
|++++.+.+.+.
T Consensus 149 ~i~~~~~~~~~~ 160 (161)
T cd04113 149 NVEEAFLKCARS 160 (161)
T ss_pred CHHHHHHHHHHh
Confidence 999999988764
No 174
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.82 E-value=0.00051 Score=62.59 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=46.9
Q ss_pred ccceeeEEE-EecCCchH-HHH-HHHh-cCCCCcEEEEEecCCCCChHHHHHHhc-C-CCEEEEeccccccHHHHHHHHH
Q psy7063 59 KLTLKNVLF-REDCNADE-LID-VINA-NRVYLPCIYAYNKIDQISIEEVDRIAR-Q-PNSVVVSCNMKLNLDYLLDIIW 132 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd-~~~-~l~~-~~~~kP~IlV~NKiDl~~~e~l~~l~~-~-~~~vpISA~~~~gld~L~~~I~ 132 (188)
.+.+||+++ ++|++... ..+ .+.. ....+|+++|+||+|+... +...+.. + ..++.+||++ .|++++.+.+.
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~-~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~ 356 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKIN-SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLT 356 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCc-chhhhhhhcCCceEEEEEec-CCHHHHHHHHH
Confidence 467899998 78876321 111 2221 1246899999999998643 2222221 1 2468899998 47777666666
Q ss_pred Hhcc
Q psy7063 133 LYLS 136 (188)
Q Consensus 133 ~~L~ 136 (188)
+.+.
T Consensus 357 ~~i~ 360 (442)
T TIGR00450 357 QKIN 360 (442)
T ss_pred HHHH
Confidence 6543
No 175
>PRK00098 GTPase RsgA; Reviewed
Probab=97.82 E-value=4.8e-05 Score=65.65 Aligned_cols=74 Identities=19% Similarity=0.147 Sum_probs=48.8
Q ss_pred ccceeeEEE-EecCCch----HHHH-HHH-hcCCCCcEEEEEecCCCC-ChHHHH---HHh-cC-CCEEEEeccccccHH
Q psy7063 59 KLTLKNVLF-REDCNAD----ELID-VIN-ANRVYLPCIYAYNKIDQI-SIEEVD---RIA-RQ-PNSVVVSCNMKLNLD 125 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d----d~~~-~l~-~~~~~kP~IlV~NKiDl~-~~e~l~---~l~-~~-~~~vpISA~~~~gld 125 (188)
-+.++|+++ +.|++.+ ...+ .+. .....+|.++|+||+|+. +.+... ... .. .+++++||+++.|++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~ 156 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLD 156 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHH
Confidence 368999987 7787532 2222 221 123468999999999997 333221 111 22 258999999999999
Q ss_pred HHHHHHH
Q psy7063 126 YLLDIIW 132 (188)
Q Consensus 126 ~L~~~I~ 132 (188)
+|.+.+.
T Consensus 157 ~L~~~l~ 163 (298)
T PRK00098 157 ELKPLLA 163 (298)
T ss_pred HHHhhcc
Confidence 9887764
No 176
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.82 E-value=0.00022 Score=55.15 Aligned_cols=76 Identities=13% Similarity=0.049 Sum_probs=50.3
Q ss_pred ccceeeEEE-EecCCchHHH----H---HHHhc-CCCCcEEEEEecCCCCCh-----HHHHHHhc--CCCEEEEeccccc
Q psy7063 59 KLTLKNVLF-REDCNADELI----D---VINAN-RVYLPCIYAYNKIDQISI-----EEVDRIAR--QPNSVVVSCNMKL 122 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~----~---~l~~~-~~~kP~IlV~NKiDl~~~-----e~l~~l~~--~~~~vpISA~~~~ 122 (188)
-++++|+++ +.|++..+-. . .+... ....|+++|+||.|+... ++...+.+ ..+.+++||++|.
T Consensus 69 ~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~ 148 (161)
T cd04117 69 YYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNS 148 (161)
T ss_pred HhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 368899997 7888744211 1 11111 135899999999998532 12222221 1357899999999
Q ss_pred cHHHHHHHHHHh
Q psy7063 123 NLDYLLDIIWLY 134 (188)
Q Consensus 123 gld~L~~~I~~~ 134 (188)
|++++.+.|.+.
T Consensus 149 ~v~~~f~~l~~~ 160 (161)
T cd04117 149 NIKESFTRLTEL 160 (161)
T ss_pred CHHHHHHHHHhh
Confidence 999999888764
No 177
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.80 E-value=0.00012 Score=59.60 Aligned_cols=77 Identities=12% Similarity=0.001 Sum_probs=51.0
Q ss_pred ccceeeEEE-EecCCchH-H------HHHHHhcCCCCcEEEEEecCCCCCh----HHHHHHhc-CCCEEEEeccccccHH
Q psy7063 59 KLTLKNVLF-REDCNADE-L------IDVINANRVYLPCIYAYNKIDQISI----EEVDRIAR-QPNSVVVSCNMKLNLD 125 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd-~------~~~l~~~~~~kP~IlV~NKiDl~~~----e~l~~l~~-~~~~vpISA~~~~gld 125 (188)
-+++||+++ ++|++..+ + ...+.......|+++|+||+|+... +.+..... ....+.+||++|.|++
T Consensus 64 ~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~ 143 (200)
T smart00176 64 YYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFE 143 (200)
T ss_pred HhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 367899997 78987432 1 1222222246899999999997532 22221111 1247899999999999
Q ss_pred HHHHHHHHhc
Q psy7063 126 YLLDIIWLYL 135 (188)
Q Consensus 126 ~L~~~I~~~L 135 (188)
++.+.|.+.+
T Consensus 144 ~~F~~l~~~i 153 (200)
T smart00176 144 KPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHH
Confidence 9888887655
No 178
>PLN03118 Rab family protein; Provisional
Probab=97.80 E-value=0.00016 Score=58.53 Aligned_cols=77 Identities=19% Similarity=0.114 Sum_probs=51.0
Q ss_pred ccceeeEEE-EecCCchH----HHHH----HHh--cCCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEeccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LIDV----INA--NRVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNM 120 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~~----l~~--~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~ 120 (188)
.++++|+++ ++|.+..+ +.+. +.. .....|.++|+||+|+... ++...+. .. ..++++||++
T Consensus 82 ~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~ 161 (211)
T PLN03118 82 YYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKT 161 (211)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 367889987 88887432 1111 111 1134799999999998632 1222221 11 2478999999
Q ss_pred cccHHHHHHHHHHhc
Q psy7063 121 KLNLDYLLDIIWLYL 135 (188)
Q Consensus 121 ~~gld~L~~~I~~~L 135 (188)
+.|++++.+.|.+.+
T Consensus 162 ~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 162 RENVEQCFEELALKI 176 (211)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999999876
No 179
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.80 E-value=0.00011 Score=56.66 Aligned_cols=76 Identities=14% Similarity=0.080 Sum_probs=49.8
Q ss_pred cceeeEEE-EecCCchHH-------HHHHHhc---CCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecccc
Q psy7063 60 LTLKNVLF-REDCNADEL-------IDVINAN---RVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMK 121 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~-------~~~l~~~---~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~ 121 (188)
++.||+++ +.|++..+- ...+... ....|+++|+||+|+... ++...+. .+ ...+++||++|
T Consensus 69 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 148 (165)
T cd04146 69 IRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAED 148 (165)
T ss_pred HHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCC
Confidence 56789997 789874321 1222221 236999999999998532 2222222 11 34789999999
Q ss_pred -ccHHHHHHHHHHhc
Q psy7063 122 -LNLDYLLDIIWLYL 135 (188)
Q Consensus 122 -~gld~L~~~I~~~L 135 (188)
.|++++.+.+.+.+
T Consensus 149 ~~~v~~~f~~l~~~~ 163 (165)
T cd04146 149 YDGVHSVFHELCREV 163 (165)
T ss_pred chhHHHHHHHHHHHH
Confidence 59999998887654
No 180
>PLN03110 Rab GTPase; Provisional
Probab=97.80 E-value=0.00017 Score=58.99 Aligned_cols=80 Identities=14% Similarity=0.032 Sum_probs=52.8
Q ss_pred cccceeeEEE-EecCCchHH----H---HHHHhc-CCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNADEL----I---DVINAN-RVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~----~---~~l~~~-~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~ 121 (188)
.-+++|+.++ +.|.+..+. . ..+... ....|+++|+||+|+... +....+. . ...++++||++|
T Consensus 80 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g 159 (216)
T PLN03110 80 AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEA 159 (216)
T ss_pred HHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 3467899776 888874322 1 112111 135899999999998532 2222222 1 134899999999
Q ss_pred ccHHHHHHHHHHhccc
Q psy7063 122 LNLDYLLDIIWLYLSL 137 (188)
Q Consensus 122 ~gld~L~~~I~~~L~~ 137 (188)
.|++++.+.|.+.+..
T Consensus 160 ~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 160 TNVEKAFQTILLEIYH 175 (216)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999998877654
No 181
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.79 E-value=0.00015 Score=60.53 Aligned_cols=80 Identities=13% Similarity=-0.056 Sum_probs=51.5
Q ss_pred hhcccceeeEEE-EecCCchH-HH-------HHHHhcCCCCcEEEEEecCCCCCh-----------------HHHHHHh-
Q psy7063 56 LPSKLTLKNVLF-REDCNADE-LI-------DVINANRVYLPCIYAYNKIDQISI-----------------EEVDRIA- 108 (188)
Q Consensus 56 ~~~~i~~ADvvl-~~D~s~dd-~~-------~~l~~~~~~kP~IlV~NKiDl~~~-----------------e~l~~l~- 108 (188)
...-+.+||+++ +.|++..+ +. ..+.......|+|+|+||+|+... ++...+.
T Consensus 78 ~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~ 157 (232)
T cd04174 78 RPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAK 157 (232)
T ss_pred HHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHH
Confidence 334478999997 88987433 21 122222246899999999998531 1222232
Q ss_pred cCC--CEEEEeccccc-cHHHHHHHHHHhc
Q psy7063 109 RQP--NSVVVSCNMKL-NLDYLLDIIWLYL 135 (188)
Q Consensus 109 ~~~--~~vpISA~~~~-gld~L~~~I~~~L 135 (188)
... ..+.+||++|. |++++.+.+...+
T Consensus 158 ~~~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 158 QLGAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HcCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 222 36789999997 8999888876643
No 182
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.78 E-value=0.00012 Score=60.16 Aligned_cols=67 Identities=19% Similarity=0.112 Sum_probs=40.9
Q ss_pred ccceeeEEE-EecCCchH----------HHHHHH-hcCC-CCcEEEEEecCCCCC----hHHH----HH----Hhc--C-
Q psy7063 59 KLTLKNVLF-REDCNADE----------LIDVIN-ANRV-YLPCIYAYNKIDQIS----IEEV----DR----IAR--Q- 110 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----------~~~~l~-~~~~-~kP~IlV~NKiDl~~----~e~l----~~----l~~--~- 110 (188)
++..||+++ ++|++..+ ....+. .... .+|+|+|+||+|+.. .+.+ +. +.. +
T Consensus 97 ~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~ 176 (219)
T cd01883 97 GASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYN 176 (219)
T ss_pred HhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCC
Confidence 467899997 88876421 111111 1112 368899999999972 2211 11 111 1
Q ss_pred ---CCEEEEeccccccHH
Q psy7063 111 ---PNSVVVSCNMKLNLD 125 (188)
Q Consensus 111 ---~~~vpISA~~~~gld 125 (188)
..++|+||.+|.|++
T Consensus 177 ~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 177 PKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cCCceEEEeecCcCCCCC
Confidence 248999999999986
No 183
>PRK12736 elongation factor Tu; Reviewed
Probab=97.78 E-value=0.00028 Score=63.11 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=49.9
Q ss_pred cccceeeEEE-EecCCc---hH---HHHHHHhcCCCCc-EEEEEecCCCCChHHH-H----HHh------cC----CCEE
Q psy7063 58 SKLTLKNVLF-REDCNA---DE---LIDVINANRVYLP-CIYAYNKIDQISIEEV-D----RIA------RQ----PNSV 114 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~---dd---~~~~l~~~~~~kP-~IlV~NKiDl~~~e~l-~----~l~------~~----~~~v 114 (188)
.++..||+.+ ++|++. .. ....+. ...+| .|+|+||+|+.+.+++ + ++. .+ .+++
T Consensus 94 ~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~--~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 171 (394)
T PRK12736 94 TGAAQMDGAILVVAATDGPMPQTREHILLAR--QVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVI 171 (394)
T ss_pred HHHhhCCEEEEEEECCCCCchhHHHHHHHHH--HcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEE
Confidence 3467899997 788763 12 222222 24578 5788999999743321 1 111 12 2589
Q ss_pred EEeccccc--------cHHHHHHHHHHhcc
Q psy7063 115 VVSCNMKL--------NLDYLLDIIWLYLS 136 (188)
Q Consensus 115 pISA~~~~--------gld~L~~~I~~~L~ 136 (188)
|+||.+|. +++.|++.+.+.++
T Consensus 172 ~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 172 RGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred EeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 99999983 67889998888764
No 184
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.77 E-value=0.00015 Score=57.97 Aligned_cols=81 Identities=14% Similarity=0.047 Sum_probs=51.8
Q ss_pred hhhhhcccceeeEEE-EecCCchH-HHH-------HHHhcCCCCcEEEEEecCCCCC-----------------hHHHHH
Q psy7063 53 ADTLPSKLTLKNVLF-REDCNADE-LID-------VINANRVYLPCIYAYNKIDQIS-----------------IEEVDR 106 (188)
Q Consensus 53 ~~~~~~~i~~ADvvl-~~D~s~dd-~~~-------~l~~~~~~kP~IlV~NKiDl~~-----------------~e~l~~ 106 (188)
..+....+.+||+++ +.|++..+ +.. .+.......|+++|+||+|+.. .++...
T Consensus 67 ~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (182)
T cd04172 67 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN 146 (182)
T ss_pred HhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH
Confidence 334445688999997 88987432 211 1222223689999999999843 112223
Q ss_pred Hh-cCC--CEEEEecccccc-HHHHHHHHHH
Q psy7063 107 IA-RQP--NSVVVSCNMKLN-LDYLLDIIWL 133 (188)
Q Consensus 107 l~-~~~--~~vpISA~~~~g-ld~L~~~I~~ 133 (188)
+. ... ..+.+||++|.| ++++-+.+.+
T Consensus 147 ~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 147 MAKQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred HHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 32 222 478899999998 9998776655
No 185
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.77 E-value=0.00021 Score=55.80 Aligned_cols=77 Identities=12% Similarity=0.048 Sum_probs=49.7
Q ss_pred cceeeEEE-EecCCchH----HHH---HH-Hh-cCCCCcEEEEEecCCCCChH-----HHHHHh-cC-CCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LID---VI-NA-NRVYLPCIYAYNKIDQISIE-----EVDRIA-RQ-PNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~---~l-~~-~~~~kP~IlV~NKiDl~~~e-----~l~~l~-~~-~~~vpISA~~~~ 122 (188)
...+|..+ +.|.+..+ +.. .+ .. .....|+|+|+||+|+.... +...+. .+ ..++++||+++.
T Consensus 70 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (180)
T cd04137 70 SIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENE 149 (180)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 45667665 67766432 111 11 11 12368999999999986321 222222 22 357999999999
Q ss_pred cHHHHHHHHHHhcc
Q psy7063 123 NLDYLLDIIWLYLS 136 (188)
Q Consensus 123 gld~L~~~I~~~L~ 136 (188)
|++++.+.+.+.+.
T Consensus 150 gv~~l~~~l~~~~~ 163 (180)
T cd04137 150 NVEEAFELLIEEIE 163 (180)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988765
No 186
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00018 Score=65.09 Aligned_cols=94 Identities=11% Similarity=0.097 Sum_probs=57.4
Q ss_pred eEEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCC----ch--HHHHHHHhcCCCCc-EEEEEecCCCCCh
Q psy7063 30 GTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCN----AD--ELIDVINANRVYLP-CIYAYNKIDQISI 101 (188)
Q Consensus 30 ~~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s----~d--d~~~~l~~~~~~kP-~IlV~NKiDl~~~ 101 (188)
.+|+..|+ =....++.+ .++.-.|..+ +++++ .. +....+. ...++ .++|+||+|..++
T Consensus 52 ~~fIDvpg--h~~~i~~mi---------ag~~~~d~alLvV~~deGl~~qtgEhL~iLd--llgi~~giivltk~D~~d~ 118 (447)
T COG3276 52 MGFIDVPG--HPDFISNLL---------AGLGGIDYALLVVAADEGLMAQTGEHLLILD--LLGIKNGIIVLTKADRVDE 118 (447)
T ss_pred eEEeeCCC--cHHHHHHHH---------hhhcCCceEEEEEeCccCcchhhHHHHHHHH--hcCCCceEEEEeccccccH
Confidence 46776665 233455555 2445555554 44442 11 2222221 23344 5999999999875
Q ss_pred HHHHHH----h-----cCCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 102 EEVDRI----A-----RQPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 102 e~l~~l----~-----~~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
+.++.. . +..+++++||.+|.|+++|.+.|.+.+.
T Consensus 119 ~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 119 ARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 443221 1 1235799999999999999999999984
No 187
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.74 E-value=0.00013 Score=60.01 Aligned_cols=75 Identities=13% Similarity=0.053 Sum_probs=50.4
Q ss_pred cceeeEEE-EecCCchHHH-------HHHHhcCCCCcEEEEEecCCCCCh----HHHHHHh-c-CCCEEEEeccccccHH
Q psy7063 60 LTLKNVLF-REDCNADELI-------DVINANRVYLPCIYAYNKIDQISI----EEVDRIA-R-QPNSVVVSCNMKLNLD 125 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~-------~~l~~~~~~kP~IlV~NKiDl~~~----e~l~~l~-~-~~~~vpISA~~~~gld 125 (188)
..+||.+| ++|.+..+-. ..+.......|+++|+||+|+... +.+ .+. . ....+.+||++|.|++
T Consensus 83 ~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~ 161 (219)
T PLN03071 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFE 161 (219)
T ss_pred cccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcCCCCCCCHH
Confidence 67888887 7898743211 122222346899999999998532 222 221 1 2247899999999999
Q ss_pred HHHHHHHHhc
Q psy7063 126 YLLDIIWLYL 135 (188)
Q Consensus 126 ~L~~~I~~~L 135 (188)
++.+.|.+.+
T Consensus 162 ~~f~~l~~~~ 171 (219)
T PLN03071 162 KPFLYLARKL 171 (219)
T ss_pred HHHHHHHHHH
Confidence 9998887665
No 188
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.73 E-value=0.00027 Score=57.65 Aligned_cols=77 Identities=16% Similarity=0.070 Sum_probs=50.5
Q ss_pred ccceeeEEE-EecCCchH----HHHHHH---h-cC-CCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LIDVIN---A-NR-VYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMK 121 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~~l~---~-~~-~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~ 121 (188)
-+.+||+++ +.|++..+ +.+.+. . .. ...|+++|+||+|+... ++...+. .. ...+.+||++|
T Consensus 72 ~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g 151 (211)
T cd04111 72 YYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTG 151 (211)
T ss_pred HhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCC
Confidence 368899887 88987432 222111 1 11 24678999999998642 2222232 12 34789999999
Q ss_pred ccHHHHHHHHHHhc
Q psy7063 122 LNLDYLLDIIWLYL 135 (188)
Q Consensus 122 ~gld~L~~~I~~~L 135 (188)
.|++++.+.|.+.+
T Consensus 152 ~~v~e~f~~l~~~~ 165 (211)
T cd04111 152 DNVEEAFELLTQEI 165 (211)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999888754
No 189
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.71 E-value=0.00019 Score=55.60 Aligned_cols=76 Identities=11% Similarity=0.033 Sum_probs=48.4
Q ss_pred cceeeEEE-EecCCchH----HH---HHHHh--cCCCCcEEEEEecCCCCChH-----HHHHHh-cC--CCEEEEecccc
Q psy7063 60 LTLKNVLF-REDCNADE----LI---DVINA--NRVYLPCIYAYNKIDQISIE-----EVDRIA-RQ--PNSVVVSCNMK 121 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~---~~l~~--~~~~kP~IlV~NKiDl~~~e-----~l~~l~-~~--~~~vpISA~~~ 121 (188)
++.|+.++ +.|.+..+ .. ..+.. .....|+++|+||+|+.... +...+. .. ...+++||+++
T Consensus 70 ~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 149 (168)
T cd04177 70 IKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKR 149 (168)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCC
Confidence 46677775 67766432 11 11211 12368999999999986422 111121 22 34889999999
Q ss_pred ccHHHHHHHHHHhc
Q psy7063 122 LNLDYLLDIIWLYL 135 (188)
Q Consensus 122 ~gld~L~~~I~~~L 135 (188)
.|++++.+.+.+.+
T Consensus 150 ~~i~~~f~~i~~~~ 163 (168)
T cd04177 150 TNVDEVFIDLVRQI 163 (168)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999887644
No 190
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.70 E-value=0.00021 Score=57.78 Aligned_cols=75 Identities=13% Similarity=0.005 Sum_probs=49.2
Q ss_pred ccceeeEEE-EecCCchH----HH----HHHHhcCCCCcEEEEEecCCCCC------------------------hHHHH
Q psy7063 59 KLTLKNVLF-REDCNADE----LI----DVINANRVYLPCIYAYNKIDQIS------------------------IEEVD 105 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~----~~l~~~~~~kP~IlV~NKiDl~~------------------------~e~l~ 105 (188)
.+.+||+++ +.|++..+ +. ..+.......|+++|+||+|+.. .++..
T Consensus 84 ~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~ 163 (195)
T cd01873 84 AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGR 163 (195)
T ss_pred cCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHH
Confidence 478999997 78887432 21 12222223689999999999853 11222
Q ss_pred HHh-cC-CCEEEEeccccccHHHHHHHHHH
Q psy7063 106 RIA-RQ-PNSVVVSCNMKLNLDYLLDIIWL 133 (188)
Q Consensus 106 ~l~-~~-~~~vpISA~~~~gld~L~~~I~~ 133 (188)
.+. .. ...+.+||++|.|++++.+.+.+
T Consensus 164 ~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 164 AVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred HHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 232 11 24788999999999998877754
No 191
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.68 E-value=0.00027 Score=68.49 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=52.8
Q ss_pred cceeeEEE-EecCCchH----HHHHHHhcCCCCcEEEEEecCCCCChH----HHHHHhc-C-CCEEEEeccccccHHHHH
Q psy7063 60 LTLKNVLF-REDCNADE----LIDVINANRVYLPCIYAYNKIDQISIE----EVDRIAR-Q-PNSVVVSCNMKLNLDYLL 128 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~~l~~~~~~kP~IlV~NKiDl~~~e----~l~~l~~-~-~~~vpISA~~~~gld~L~ 128 (188)
...+|+++ ++|++.-+ +..++ ....+|+++|+||+|+.... +.+.+.+ + .+++|+||.+|.|+++|.
T Consensus 83 ~~~aD~vI~VvDat~ler~l~l~~ql--~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~ 160 (772)
T PRK09554 83 SGDADLLINVVDASNLERNLYLTLQL--LELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALK 160 (772)
T ss_pred ccCCCEEEEEecCCcchhhHHHHHHH--HHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHH
Confidence 46899998 88987422 12233 23469999999999986331 2333322 2 358999999999999999
Q ss_pred HHHHHhc
Q psy7063 129 DIIWLYL 135 (188)
Q Consensus 129 ~~I~~~L 135 (188)
+.+.+..
T Consensus 161 ~~I~~~~ 167 (772)
T PRK09554 161 LAIDRHQ 167 (772)
T ss_pred HHHHHhh
Confidence 9998875
No 192
>CHL00071 tufA elongation factor Tu
Probab=97.68 E-value=0.00036 Score=62.69 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=40.0
Q ss_pred cccceeeEEE-EecCCc---hHHHHHHHh-cCCCCc-EEEEEecCCCCChHHH-H----HH----h--cC----CCEEEE
Q psy7063 58 SKLTLKNVLF-REDCNA---DELIDVINA-NRVYLP-CIYAYNKIDQISIEEV-D----RI----A--RQ----PNSVVV 116 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP-~IlV~NKiDl~~~e~l-~----~l----~--~~----~~~vpI 116 (188)
.++..||+.+ ++|++. +...+.+.. ....+| +|+|+||+|+.+.+++ + .+ . .+ ..++|+
T Consensus 94 ~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~ 173 (409)
T CHL00071 94 TGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSG 173 (409)
T ss_pred HHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEc
Confidence 3578899997 788762 221222211 224578 6689999999864321 1 11 1 12 248999
Q ss_pred ecccccc
Q psy7063 117 SCNMKLN 123 (188)
Q Consensus 117 SA~~~~g 123 (188)
||.+|+|
T Consensus 174 Sa~~g~n 180 (409)
T CHL00071 174 SALLALE 180 (409)
T ss_pred chhhccc
Confidence 9998873
No 193
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.68 E-value=0.00012 Score=68.86 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=51.6
Q ss_pred cceeeEEE-EecCCch-HHHHH-HHhcCCCCcEEEEEecCCCCChH----HHHHHhc-C-CCEEEEeccccccHHHHHHH
Q psy7063 60 LTLKNVLF-REDCNAD-ELIDV-INANRVYLPCIYAYNKIDQISIE----EVDRIAR-Q-PNSVVVSCNMKLNLDYLLDI 130 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d-d~~~~-l~~~~~~kP~IlV~NKiDl~~~e----~l~~l~~-~-~~~vpISA~~~~gld~L~~~ 130 (188)
..++|+++ ++|++.. ..... .+.....+|+++|+||+|+.+.. +.+.+.+ + .+++++||++|.|+++|.+.
T Consensus 70 ~~~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 70 NEKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred hcCCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHH
Confidence 35789998 8898742 21111 11123469999999999986322 2233321 1 35899999999999999999
Q ss_pred HHHhc
Q psy7063 131 IWLYL 135 (188)
Q Consensus 131 I~~~L 135 (188)
+.+..
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 98764
No 194
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.67 E-value=0.00026 Score=56.24 Aligned_cols=79 Identities=14% Similarity=-0.004 Sum_probs=50.5
Q ss_pred hhhcccceeeEEE-EecCCchH-HHH-------HHHhcCCCCcEEEEEecCCCCC-----------------hHHHHHHh
Q psy7063 55 TLPSKLTLKNVLF-REDCNADE-LID-------VINANRVYLPCIYAYNKIDQIS-----------------IEEVDRIA 108 (188)
Q Consensus 55 ~~~~~i~~ADvvl-~~D~s~dd-~~~-------~l~~~~~~kP~IlV~NKiDl~~-----------------~e~l~~l~ 108 (188)
+......+||+++ +.|++..+ +.. .+.......|+++|+||+|+.. .++...+.
T Consensus 65 ~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 65 VRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred cchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 3444578999997 88987432 211 1222224689999999999842 12222232
Q ss_pred -cCC--CEEEEecccccc-HHHHHHHHHH
Q psy7063 109 -RQP--NSVVVSCNMKLN-LDYLLDIIWL 133 (188)
Q Consensus 109 -~~~--~~vpISA~~~~g-ld~L~~~I~~ 133 (188)
... ..+.+||++|.| ++++-..+.+
T Consensus 145 ~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 145 KQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 222 468899999995 9998777665
No 195
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.67 E-value=0.00022 Score=56.94 Aligned_cols=68 Identities=21% Similarity=0.123 Sum_probs=41.5
Q ss_pred ccceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEEEEEecCCCCCh--HH-HH---HHh-c--------CCCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNA---DELIDVINA-NRVYLPCIYAYNKIDQISI--EE-VD---RIA-R--------QPNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~IlV~NKiDl~~~--e~-l~---~l~-~--------~~~~vpISA 118 (188)
.+..+|.++ ++|++. +.....+.. ....+|.++|+||+|+... +. ++ .+. . ...++++||
T Consensus 85 ~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa 164 (194)
T cd01891 85 VLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASA 164 (194)
T ss_pred HHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeeh
Confidence 367899987 888764 222221211 1246899999999998632 11 21 111 0 125799999
Q ss_pred cccccHHH
Q psy7063 119 NMKLNLDY 126 (188)
Q Consensus 119 ~~~~gld~ 126 (188)
++|.|+.+
T Consensus 165 ~~g~~~~~ 172 (194)
T cd01891 165 KNGWASLN 172 (194)
T ss_pred hccccccc
Confidence 99988733
No 196
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=97.66 E-value=3.3e-05 Score=57.60 Aligned_cols=51 Identities=27% Similarity=0.339 Sum_probs=35.9
Q ss_pred EEecCCCC-ChHHHHHHhc-C--CCEEEEeccccccH-------------------------------------------
Q psy7063 92 AYNKIDQI-SIEEVDRIAR-Q--PNSVVVSCNMKLNL------------------------------------------- 124 (188)
Q Consensus 92 V~NKiDl~-~~e~l~~l~~-~--~~~vpISA~~~~gl------------------------------------------- 124 (188)
|+||+|+. +.++++++.. + ..+||+||..++.|
T Consensus 1 AaNK~D~~~a~~ni~kl~~~~~~~~vVp~SA~aEl~Lr~a~k~g~I~Y~pGd~~F~i~~~~~l~~~q~~~Le~I~~~vl~ 80 (109)
T PF08438_consen 1 AANKADLPAADENIEKLKEKYPDEPVVPTSAAAELALRKAAKAGLIDYIPGDSDFEITDDDKLSDKQKKALEKIRDNVLE 80 (109)
T ss_dssp EEE-GGG-S-HHHHHHHHHHHTT-EEEEE-HHHHHHHHS-SSS----S----------------------TTHHHHHHTS
T ss_pred CCccccccccHhHHHHHHHhCCCCceeeccHHHHHHHHHHHHCCCEEeCCCCCceEeecccccCHHHHHHHHHHHHHHHH
Confidence 68999985 4566777752 3 35899999988877
Q ss_pred --------HHHHHHHHHhcccceeee
Q psy7063 125 --------DYLLDIIWLYLSLIRVYT 142 (188)
Q Consensus 125 --------d~L~~~I~~~L~~irVY~ 142 (188)
+.|..++|+.|++|.|||
T Consensus 81 ~~g~TGVq~aln~AVf~ll~~i~VyP 106 (109)
T PF08438_consen 81 RYGSTGVQEALNRAVFDLLGMIVVYP 106 (109)
T ss_dssp SSSS-SHHHHHHHHHHTTS-EEEEEE
T ss_pred hcCCchHHHHHHHHHHHhcCCeeEec
Confidence 337888999999999998
No 197
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.65 E-value=0.00065 Score=52.75 Aligned_cols=78 Identities=14% Similarity=-0.024 Sum_probs=48.6
Q ss_pred cccceeeEEE-EecCCchH----HHH---HHHh--cCCCCcEEEEEecCCCCChH-----HHHHHhc--CCCEEEEeccc
Q psy7063 58 SKLTLKNVLF-REDCNADE----LID---VINA--NRVYLPCIYAYNKIDQISIE-----EVDRIAR--QPNSVVVSCNM 120 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd----~~~---~l~~--~~~~kP~IlV~NKiDl~~~e-----~l~~l~~--~~~~vpISA~~ 120 (188)
..++++|.++ ++|.+..+ +.. .+.. .....|+++|+||+|+.... ....+.. ....+.+||++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (170)
T cd04115 71 HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKD 150 (170)
T ss_pred HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccC
Confidence 4468899887 88987432 111 2221 12468999999999985321 2222321 13588999999
Q ss_pred ---cccHHHHHHHHHHhc
Q psy7063 121 ---KLNLDYLLDIIWLYL 135 (188)
Q Consensus 121 ---~~gld~L~~~I~~~L 135 (188)
+.|++++...+.+.+
T Consensus 151 ~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 151 PSENDHVEAIFMTLAHKL 168 (170)
T ss_pred CcCCCCHHHHHHHHHHHh
Confidence 777777766665543
No 198
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.64 E-value=0.00017 Score=63.53 Aligned_cols=76 Identities=16% Similarity=0.073 Sum_probs=48.0
Q ss_pred cceeeEEE-Eec-CCchHHHHHHHhcCCCCcEEEEEecCCCCChHH-------HHHHhcC---------CCEEEEecccc
Q psy7063 60 LTLKNVLF-RED-CNADELIDVINANRVYLPCIYAYNKIDQISIEE-------VDRIARQ---------PNSVVVSCNMK 121 (188)
Q Consensus 60 i~~ADvvl-~~D-~s~dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~-------l~~l~~~---------~~~vpISA~~~ 121 (188)
+..||+++ +.+ .+.+++.....+ .....-++|+||+|+.+... +.....+ ++++++||.++
T Consensus 167 ~~~aD~vlvv~~p~~gd~iq~~k~g-i~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g 245 (332)
T PRK09435 167 AGMVDFFLLLQLPGAGDELQGIKKG-IMELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEG 245 (332)
T ss_pred HHhCCEEEEEecCCchHHHHHHHhh-hhhhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCC
Confidence 34466665 333 334444332211 22344599999999875321 1111111 46899999999
Q ss_pred ccHHHHHHHHHHhcc
Q psy7063 122 LNLDYLLDIIWLYLS 136 (188)
Q Consensus 122 ~gld~L~~~I~~~L~ 136 (188)
.|+++|.+.|.+++.
T Consensus 246 ~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 246 EGIDEIWQAIEDHRA 260 (332)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999987
No 199
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.63 E-value=0.00036 Score=54.26 Aligned_cols=75 Identities=7% Similarity=0.017 Sum_probs=48.1
Q ss_pred cceeeEEE-EecCCchHHH-------HHHHhcC--CCCcEEEEEecCCCCC--h-----HHHHHHh-cC--CCEEEEecc
Q psy7063 60 LTLKNVLF-REDCNADELI-------DVINANR--VYLPCIYAYNKIDQIS--I-----EEVDRIA-RQ--PNSVVVSCN 119 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~-------~~l~~~~--~~kP~IlV~NKiDl~~--~-----e~l~~l~-~~--~~~vpISA~ 119 (188)
...||.++ +.|.+..+-. ..+.... ...|+++|+||.|+.. . ++.+.+. .. ...+.+||+
T Consensus 63 ~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 142 (158)
T cd04103 63 ASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCAT 142 (158)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecC
Confidence 35688887 7888743311 1222111 3579999999999742 1 1122232 21 358899999
Q ss_pred ccccHHHHHHHHHHh
Q psy7063 120 MKLNLDYLLDIIWLY 134 (188)
Q Consensus 120 ~~~gld~L~~~I~~~ 134 (188)
+|.|++++.+.+.+.
T Consensus 143 ~~~~i~~~f~~~~~~ 157 (158)
T cd04103 143 YGLNVERVFQEAAQK 157 (158)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999998887654
No 200
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.60 E-value=0.00023 Score=68.57 Aligned_cols=78 Identities=24% Similarity=0.381 Sum_probs=52.1
Q ss_pred ccceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEEEEEecCCCCCh--HHH-HHHhc----------CCCEEEEeccc
Q psy7063 59 KLTLKNVLF-REDCNA---DELIDVINA-NRVYLPCIYAYNKIDQISI--EEV-DRIAR----------QPNSVVVSCNM 120 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~IlV~NKiDl~~~--e~l-~~l~~----------~~~~vpISA~~ 120 (188)
++..||+++ ++|++. ..-.+.+.. ....+|+|+|+||+|+... +.+ ..+.. ...++++||++
T Consensus 315 g~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 315 GANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred HHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 578899887 777653 222222221 2246899999999998742 222 22211 12479999999
Q ss_pred cccHHHHHHHHHHhcc
Q psy7063 121 KLNLDYLLDIIWLYLS 136 (188)
Q Consensus 121 ~~gld~L~~~I~~~L~ 136 (188)
|.|+++|.+.|.....
T Consensus 395 G~GIdeLle~I~~l~e 410 (742)
T CHL00189 395 GTNIDKLLETILLLAE 410 (742)
T ss_pred CCCHHHHHHhhhhhhh
Confidence 9999999999987654
No 201
>PRK12288 GTPase RsgA; Reviewed
Probab=97.60 E-value=0.00037 Score=61.67 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=52.0
Q ss_pred cceeeEEE-EecCCch---HHH-HHHH-hcCCCCcEEEEEecCCCCChHH---HHHH---h-cC-CCEEEEeccccccHH
Q psy7063 60 LTLKNVLF-REDCNAD---ELI-DVIN-ANRVYLPCIYAYNKIDQISIEE---VDRI---A-RQ-PNSVVVSCNMKLNLD 125 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d---d~~-~~l~-~~~~~kP~IlV~NKiDl~~~e~---l~~l---~-~~-~~~vpISA~~~~gld 125 (188)
+.|+|.++ +.+.+.+ ..+ ..+. .....+|.++|+||+|+.+.++ +..+ + .. .+++++||+++.|++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~Gid 197 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLE 197 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHH
Confidence 46788886 5544321 111 2221 1224589999999999985432 2111 1 22 358999999999999
Q ss_pred HHHHHHHHhcccceeeeCCCC
Q psy7063 126 YLLDIIWLYLSLIRVYTKKPG 146 (188)
Q Consensus 126 ~L~~~I~~~L~~irVY~k~~g 146 (188)
+|.+.|... +.++.-.+|
T Consensus 198 eL~~~L~~k---i~~~vG~sg 215 (347)
T PRK12288 198 ELEAALTGR---ISIFVGQSG 215 (347)
T ss_pred HHHHHHhhC---CEEEECCCC
Confidence 999988754 345554443
No 202
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.0002 Score=65.62 Aligned_cols=70 Identities=26% Similarity=0.289 Sum_probs=47.2
Q ss_pred EEecCCch----HHHHHHHhcCCCCcEEEEEecCCCCCh--HHH----HHHh--cCCCEEEEeccccccHHHHHHHHHHh
Q psy7063 67 FREDCNAD----ELIDVINANRVYLPCIYAYNKIDQISI--EEV----DRIA--RQPNSVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 67 l~~D~s~d----d~~~~l~~~~~~kP~IlV~NKiDl~~~--e~l----~~l~--~~~~~vpISA~~~~gld~L~~~I~~~ 134 (188)
|++|++.. .+.......-.+.-+|-|+||+|++.. +.+ +... ...+.+.+||++|.|+++++++|.+.
T Consensus 105 LvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~ 184 (603)
T COG0481 105 LVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEK 184 (603)
T ss_pred EEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhh
Confidence 47888732 122332222245678889999999843 322 2222 22368999999999999999999998
Q ss_pred cc
Q psy7063 135 LS 136 (188)
Q Consensus 135 L~ 136 (188)
++
T Consensus 185 iP 186 (603)
T COG0481 185 IP 186 (603)
T ss_pred CC
Confidence 75
No 203
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.59 E-value=0.00074 Score=49.77 Aligned_cols=75 Identities=21% Similarity=0.191 Sum_probs=46.3
Q ss_pred cccceeeEEE-EecCCch--HHHHHHHh-cCCCCcEEEEEecCCCCChH---HHHH-Hh--cCCCEEEEeccccccHHHH
Q psy7063 58 SKLTLKNVLF-REDCNAD--ELIDVINA-NRVYLPCIYAYNKIDQISIE---EVDR-IA--RQPNSVVVSCNMKLNLDYL 127 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d--d~~~~l~~-~~~~kP~IlV~NKiDl~~~e---~l~~-l~--~~~~~vpISA~~~~gld~L 127 (188)
..+..+|+.+ +.++... .....+.. .....|+++|+||+|+.... .... +. .....+++||.++.|++++
T Consensus 76 ~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 76 SSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHH
Confidence 3466677766 3554421 11122221 11268999999999997532 2211 11 2345899999999999999
Q ss_pred HHHHH
Q psy7063 128 LDIIW 132 (188)
Q Consensus 128 ~~~I~ 132 (188)
.+.|.
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 88764
No 204
>KOG0462|consensus
Probab=97.58 E-value=0.00028 Score=65.48 Aligned_cols=77 Identities=25% Similarity=0.198 Sum_probs=52.2
Q ss_pred cceeeEEE-EecCCch----HHHHHHHhcCCCCcEEEEEecCCCCCh--HHH----HHHhc--CCCEEEEeccccccHHH
Q psy7063 60 LTLKNVLF-REDCNAD----ELIDVINANRVYLPCIYAYNKIDQISI--EEV----DRIAR--QPNSVVVSCNMKLNLDY 126 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d----d~~~~l~~~~~~kP~IlV~NKiDl~~~--e~l----~~l~~--~~~~vpISA~~~~gld~ 126 (188)
+.-||-+| ++|++.. ....+..+......+|.|+||||++.. +.+ ..+.. ..+++.+||++|+|+++
T Consensus 146 laac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~ 225 (650)
T KOG0462|consen 146 LAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEE 225 (650)
T ss_pred hhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHH
Confidence 45566665 7888732 122222222345678999999999843 433 22222 24689999999999999
Q ss_pred HHHHHHHhcc
Q psy7063 127 LLDIIWLYLS 136 (188)
Q Consensus 127 L~~~I~~~L~ 136 (188)
|+++|.+..+
T Consensus 226 lL~AII~rVP 235 (650)
T KOG0462|consen 226 LLEAIIRRVP 235 (650)
T ss_pred HHHHHHhhCC
Confidence 9999999875
No 205
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.57 E-value=0.0002 Score=61.82 Aligned_cols=54 Identities=26% Similarity=0.268 Sum_probs=39.9
Q ss_pred CCCcEEEEEecCCCCChHHH-----------HHHhc----C-CCEEEEeccccccHHHHHHHHHHhcccc
Q psy7063 85 VYLPCIYAYNKIDQISIEEV-----------DRIAR----Q-PNSVVVSCNMKLNLDYLLDIIWLYLSLI 138 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~~e~l-----------~~l~~----~-~~~vpISA~~~~gld~L~~~I~~~L~~i 138 (188)
..+|.++|+||+|+...+.. ..+.. . ++++++||.++.|+++|.+.|.+.++.+
T Consensus 171 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~~~ 240 (300)
T TIGR00750 171 MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKTFL 240 (300)
T ss_pred hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 36889999999999754321 11111 1 2489999999999999999999886643
No 206
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.57 E-value=0.00025 Score=66.84 Aligned_cols=75 Identities=20% Similarity=0.163 Sum_probs=48.5
Q ss_pred ccceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEEEEEecCCCCCh-----------------HHH------------
Q psy7063 59 KLTLKNVLF-REDCNA---DELIDVINA-NRVYLPCIYAYNKIDQISI-----------------EEV------------ 104 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~IlV~NKiDl~~~-----------------e~l------------ 104 (188)
....||+++ ++|++. ..-.+.+.. ....+|+++|+||+|+.+. +++
T Consensus 89 ~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv 168 (590)
T TIGR00491 89 GGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLV 168 (590)
T ss_pred HHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 467899997 788763 221222211 2246899999999998631 000
Q ss_pred HHHh-------------c---CCCEEEEeccccccHHHHHHHHHH
Q psy7063 105 DRIA-------------R---QPNSVVVSCNMKLNLDYLLDIIWL 133 (188)
Q Consensus 105 ~~l~-------------~---~~~~vpISA~~~~gld~L~~~I~~ 133 (188)
..+. . ...++|+||.+|+|+++|.+.|..
T Consensus 169 ~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 169 IKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 0011 0 125799999999999999988754
No 207
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.55 E-value=0.00051 Score=49.78 Aligned_cols=74 Identities=20% Similarity=0.136 Sum_probs=49.6
Q ss_pred ccceeeEEE-EecCCchHHHH----H-----HHhcCCCCcEEEEEecCCCCChHHHH------HHh--cCCCEEEEeccc
Q psy7063 59 KLTLKNVLF-REDCNADELID----V-----INANRVYLPCIYAYNKIDQISIEEVD------RIA--RQPNSVVVSCNM 120 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~~----~-----l~~~~~~kP~IlV~NKiDl~~~e~l~------~l~--~~~~~vpISA~~ 120 (188)
.+..+|+++ ++|++.+.... . .......+|+++|+||+|+...+... ... ....++++||.+
T Consensus 65 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 144 (157)
T cd00882 65 YYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKT 144 (157)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCC
Confidence 367889887 78887543111 1 11123469999999999987543211 111 224689999999
Q ss_pred cccHHHHHHHHH
Q psy7063 121 KLNLDYLLDIIW 132 (188)
Q Consensus 121 ~~gld~L~~~I~ 132 (188)
+.|++++.+.|.
T Consensus 145 ~~~i~~~~~~l~ 156 (157)
T cd00882 145 GENVEELFEELA 156 (157)
T ss_pred CCChHHHHHHHh
Confidence 999999988775
No 208
>PRK01889 GTPase RsgA; Reviewed
Probab=97.53 E-value=0.00041 Score=61.46 Aligned_cols=73 Identities=14% Similarity=0.002 Sum_probs=47.2
Q ss_pred cceeeEEE-EecCCc---hHHH-HHHHh-cCCCCcEEEEEecCCCCChH--HHHHHh---cCCCEEEEeccccccHHHHH
Q psy7063 60 LTLKNVLF-REDCNA---DELI-DVINA-NRVYLPCIYAYNKIDQISIE--EVDRIA---RQPNSVVVSCNMKLNLDYLL 128 (188)
Q Consensus 60 i~~ADvvl-~~D~s~---dd~~-~~l~~-~~~~kP~IlV~NKiDl~~~e--~l~~l~---~~~~~vpISA~~~~gld~L~ 128 (188)
+.++|.++ +.++.. ...+ ..+.. .....|.++|+||+|+.+.. ..+.+. ...+++++||+++.|++.|.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~L~ 189 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGLDVLA 189 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccHHHHH
Confidence 68899886 665531 1122 22211 22457889999999998542 223232 22368999999999999988
Q ss_pred HHHH
Q psy7063 129 DIIW 132 (188)
Q Consensus 129 ~~I~ 132 (188)
..|.
T Consensus 190 ~~L~ 193 (356)
T PRK01889 190 AWLS 193 (356)
T ss_pred HHhh
Confidence 8775
No 209
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.51 E-value=0.00031 Score=54.63 Aligned_cols=74 Identities=18% Similarity=0.058 Sum_probs=45.4
Q ss_pred ccceeeEEE-EecCCchH----HHHHHHh---cCCCCcEEEEEecCCCCCh---HHHH-HH--hcC-----CCEEEEecc
Q psy7063 59 KLTLKNVLF-REDCNADE----LIDVINA---NRVYLPCIYAYNKIDQISI---EEVD-RI--ARQ-----PNSVVVSCN 119 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~~l~~---~~~~kP~IlV~NKiDl~~~---e~l~-~l--~~~-----~~~vpISA~ 119 (188)
-+++||+++ ++|.+... ....+.. ....+|+++|+||+|+... +++. .+ ..+ -..+++||+
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~ 143 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLD 143 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeec
Confidence 378899998 88987532 1111111 1246999999999998643 2221 11 111 135778888
Q ss_pred c------cccHHHHHHHHH
Q psy7063 120 M------KLNLDYLLDIIW 132 (188)
Q Consensus 120 ~------~~gld~L~~~I~ 132 (188)
+ ++|++++.+.+.
T Consensus 144 ~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 144 DDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred CCCChhHHHHHHHHHHHHh
Confidence 8 888887766554
No 210
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00095 Score=58.71 Aligned_cols=51 Identities=29% Similarity=0.401 Sum_probs=40.9
Q ss_pred CCcEEEEEecCCCCChHH-HH---HHh--------cCCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 86 YLPCIYAYNKIDQISIEE-VD---RIA--------RQPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 86 ~kP~IlV~NKiDl~~~e~-l~---~l~--------~~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
-+.+|+|-||+|+.+.|. ++ .+. +..++|||||..+.|+|.|.++|.++.+
T Consensus 140 ik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 140 IKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred cceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 478999999999998754 22 221 2236999999999999999999999876
No 211
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.49 E-value=0.00059 Score=61.44 Aligned_cols=67 Identities=15% Similarity=0.041 Sum_probs=41.5
Q ss_pred ccceeeEEE-EecCCc--h---H---HHHHHHhcCCCCcEEEEEecCCCCC--hH-------HHHHHh---cC----CCE
Q psy7063 59 KLTLKNVLF-REDCNA--D---E---LIDVINANRVYLPCIYAYNKIDQIS--IE-------EVDRIA---RQ----PNS 113 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~--d---d---~~~~l~~~~~~kP~IlV~NKiDl~~--~e-------~l~~l~---~~----~~~ 113 (188)
++..||+++ ++|++. . . ....+.. ....|+++|+||+|+.. .+ ++..+. .+ .++
T Consensus 104 ~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~i 182 (425)
T PRK12317 104 GASQADAAVLVVAADDAGGVMPQTREHVFLART-LGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPF 182 (425)
T ss_pred chhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceE
Confidence 468899997 788764 1 1 1112211 11246899999999974 21 111111 12 248
Q ss_pred EEEeccccccHHH
Q psy7063 114 VVVSCNMKLNLDY 126 (188)
Q Consensus 114 vpISA~~~~gld~ 126 (188)
+|+||.+|.|+++
T Consensus 183 i~iSA~~g~gi~~ 195 (425)
T PRK12317 183 IPVSAFEGDNVVK 195 (425)
T ss_pred EEeecccCCCccc
Confidence 9999999999986
No 212
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.49 E-value=0.00037 Score=63.97 Aligned_cols=69 Identities=13% Similarity=-0.044 Sum_probs=43.1
Q ss_pred ccceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCCCh-H-HHH----HHh------c---CCCEEEE
Q psy7063 59 KLTLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQISI-E-EVD----RIA------R---QPNSVVV 116 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~~~-e-~l~----~l~------~---~~~~vpI 116 (188)
++..||+++ ++|++.. +....+... .-+|+|+|+||+|+.+. + .+. .+. . ..+++|+
T Consensus 127 ~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipv 205 (474)
T PRK05124 127 GASTCDLAILLIDARKGVLDQTRRHSFIATLL-GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPL 205 (474)
T ss_pred HHhhCCEEEEEEECCCCccccchHHHHHHHHh-CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 478999997 7887521 112222211 23578999999998732 2 121 111 1 2358999
Q ss_pred eccccccHHHHH
Q psy7063 117 SCNMKLNLDYLL 128 (188)
Q Consensus 117 SA~~~~gld~L~ 128 (188)
||++|.|++.+.
T Consensus 206 SA~~g~ni~~~~ 217 (474)
T PRK05124 206 SALEGDNVVSQS 217 (474)
T ss_pred EeecCCCccccc
Confidence 999999998754
No 213
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.00071 Score=64.02 Aligned_cols=95 Identities=15% Similarity=0.086 Sum_probs=63.6
Q ss_pred eEEEccCC--c-----cchhchhhHHHHHHhhhhhcccceeeEEE-EecCCchH----HHHHHHhcCCCCcEEEEEecCC
Q psy7063 30 GTFQSYTS--S-----INRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNADE----LIDVINANRVYLPCIYAYNKID 97 (188)
Q Consensus 30 ~~~~~~~~--~-----ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~dd----~~~~l~~~~~~kP~IlV~NKiD 97 (188)
+++++-|+ | .+.+..++.+. =..+|+++ ++|++.-+ +.-|+ ....+|+++++|++|
T Consensus 52 i~ivDLPG~YSL~~~S~DE~Var~~ll----------~~~~D~ivnVvDAtnLeRnLyltlQL--lE~g~p~ilaLNm~D 119 (653)
T COG0370 52 IEIVDLPGTYSLTAYSEDEKVARDFLL----------EGKPDLIVNVVDATNLERNLYLTLQL--LELGIPMILALNMID 119 (653)
T ss_pred EEEEeCCCcCCCCCCCchHHHHHHHHh----------cCCCCEEEEEcccchHHHHHHHHHHH--HHcCCCeEEEeccHh
Confidence 56777665 3 44444444441 15679999 89998432 12223 225689999999999
Q ss_pred CCChH----HHHHHhc-C-CCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 98 QISIE----EVDRIAR-Q-PNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 98 l~~~e----~l~~l~~-~-~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
.+... +.+++.+ . -+++|+||++|.|+++|++.+.+...
T Consensus 120 ~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 120 EAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred hHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence 87542 1233432 1 35999999999999999999987654
No 214
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.46 E-value=0.00062 Score=53.87 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=49.9
Q ss_pred cceeeEEE-EecCCchH-HH-------HHHHh-cCCCCcEEEEEecCCCCC---hHHHHHHh---cC-----CCEEEEec
Q psy7063 60 LTLKNVLF-REDCNADE-LI-------DVINA-NRVYLPCIYAYNKIDQIS---IEEVDRIA---RQ-----PNSVVVSC 118 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd-~~-------~~l~~-~~~~kP~IlV~NKiDl~~---~e~l~~l~---~~-----~~~vpISA 118 (188)
+.++|.++ ++|.+..+ +. ..+.. ....+|+++++||.|+.. .+++.... .. -.++++||
T Consensus 79 ~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa 158 (175)
T PF00025_consen 79 FQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSA 158 (175)
T ss_dssp HTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBT
T ss_pred ccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeec
Confidence 56889887 89987432 11 12211 124699999999999864 23343221 11 13788999
Q ss_pred cccccHHHHHHHHHHh
Q psy7063 119 NMKLNLDYLLDIIWLY 134 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~ 134 (188)
.+|.|+++..+.|.+.
T Consensus 159 ~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 159 KTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp TTTBTHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHhc
Confidence 9999999988887754
No 215
>KOG1145|consensus
Probab=97.45 E-value=0.00072 Score=62.89 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=50.9
Q ss_pred cccceeeEEE-EecCC---chHHHHHHHh-cCCCCcEEEEEecCCCCC--hHHH-HHHh-------cC---CCEEEEecc
Q psy7063 58 SKLTLKNVLF-REDCN---ADELIDVINA-NRVYLPCIYAYNKIDQIS--IEEV-DRIA-------RQ---PNSVVVSCN 119 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s---~dd~~~~l~~-~~~~kP~IlV~NKiDl~~--~e~l-~~l~-------~~---~~~vpISA~ 119 (188)
-+.+-+|+++ ++-+. -++-.+.+.. .....|+|+++||||.+. .+.+ ..|. .. -.+|||||+
T Consensus 220 RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl 299 (683)
T KOG1145|consen 220 RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISAL 299 (683)
T ss_pred ccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence 4567788886 44222 2222233322 235799999999999873 2322 2332 11 137999999
Q ss_pred ccccHHHHHHHHHHhccc
Q psy7063 120 MKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~~ 137 (188)
+|.|++.|.+++.-...+
T Consensus 300 ~g~nl~~L~eaill~Ae~ 317 (683)
T KOG1145|consen 300 TGENLDLLEEAILLLAEV 317 (683)
T ss_pred cCCChHHHHHHHHHHHHH
Confidence 999999999998755443
No 216
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.45 E-value=0.0013 Score=51.83 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=39.8
Q ss_pred CCCcEEEEEecCCCCChHHHH----HH---hc--CCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 85 VYLPCIYAYNKIDQISIEEVD----RI---AR--QPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~~e~l~----~l---~~--~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
..+|+++++||+|+.+..+.+ .+ .. ...++++||+++.|++++.+.|.+.+.
T Consensus 134 ~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 134 YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 468999999999997643221 11 11 246899999999999999999988764
No 217
>PLN03108 Rab family protein; Provisional
Probab=97.45 E-value=0.0013 Score=53.43 Aligned_cols=75 Identities=15% Similarity=-0.019 Sum_probs=47.6
Q ss_pred cceeeEEE-EecCCchH----HHHH---HHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LIDV---INA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~~---l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~g 123 (188)
+.+||.++ +.|++..+ +... +.. .....|+++|+||+|+... ++.+.+. . ....+.+||+++.|
T Consensus 76 ~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 155 (210)
T PLN03108 76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 155 (210)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 56788887 78887432 1111 111 1236899999999998642 2223332 1 12478999999999
Q ss_pred HHHHHHHHHHh
Q psy7063 124 LDYLLDIIWLY 134 (188)
Q Consensus 124 ld~L~~~I~~~ 134 (188)
++++.+.+.+.
T Consensus 156 v~e~f~~l~~~ 166 (210)
T PLN03108 156 VEEAFIKTAAK 166 (210)
T ss_pred HHHHHHHHHHH
Confidence 99866555543
No 218
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.43 E-value=0.00048 Score=54.24 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=38.7
Q ss_pred eeeEEE-EecCCc----hHH--HHHHHhcCCCCcEEEEEecCCCCChHHH----HHH----hcC---CCEEEEecccccc
Q psy7063 62 LKNVLF-REDCNA----DEL--IDVINANRVYLPCIYAYNKIDQISIEEV----DRI----ARQ---PNSVVVSCNMKLN 123 (188)
Q Consensus 62 ~ADvvl-~~D~s~----dd~--~~~l~~~~~~kP~IlV~NKiDl~~~e~l----~~l----~~~---~~~vpISA~~~~g 123 (188)
.+|.++ ++|++. .+. ...+. ...+|+++|+||+|+.+.++. +.+ ... ..++++||++|+|
T Consensus 100 ~~~~ii~vvd~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~g 177 (179)
T TIGR03598 100 NLKGVVLLMDIRHPLKELDLEMLEWLR--ERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTG 177 (179)
T ss_pred hhcEEEEEecCCCCCCHHHHHHHHHHH--HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCC
Confidence 456665 788753 221 22222 246899999999999754322 212 121 2689999999999
Q ss_pred HH
Q psy7063 124 LD 125 (188)
Q Consensus 124 ld 125 (188)
++
T Consensus 178 i~ 179 (179)
T TIGR03598 178 ID 179 (179)
T ss_pred CC
Confidence 74
No 219
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.43 E-value=0.00064 Score=52.96 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=46.3
Q ss_pred ccceeeEEE-EecCCchH-H---HHHHHh-----cCCCCcEEEEEecCCCCCh---HHH-HHH--hcC------C-CEEE
Q psy7063 59 KLTLKNVLF-REDCNADE-L---IDVINA-----NRVYLPCIYAYNKIDQISI---EEV-DRI--ARQ------P-NSVV 115 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd-~---~~~l~~-----~~~~kP~IlV~NKiDl~~~---e~l-~~l--~~~------~-~~vp 115 (188)
-+.+||+++ ++|.+..+ + ...+.. ....+|+++|+||+|+... +++ +.+ ..+ . .+++
T Consensus 63 ~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~ 142 (167)
T cd04161 63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEP 142 (167)
T ss_pred HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEE
Confidence 368899997 88987532 1 112211 1136899999999998643 222 211 111 1 3577
Q ss_pred Eecccc------ccHHHHHHHHH
Q psy7063 116 VSCNMK------LNLDYLLDIIW 132 (188)
Q Consensus 116 ISA~~~------~gld~L~~~I~ 132 (188)
+||++| .|+++-.+.|.
T Consensus 143 ~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 143 CSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred eEceeCCCCccccCHHHHHHHHh
Confidence 999998 78888777664
No 220
>PRK00049 elongation factor Tu; Reviewed
Probab=97.42 E-value=0.0013 Score=59.04 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=49.1
Q ss_pred cccceeeEEE-EecCCc---hH---HHHHHHhcCCCCcEE-EEEecCCCCChHH-HH----HH----h--cC----CCEE
Q psy7063 58 SKLTLKNVLF-REDCNA---DE---LIDVINANRVYLPCI-YAYNKIDQISIEE-VD----RI----A--RQ----PNSV 114 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~---dd---~~~~l~~~~~~kP~I-lV~NKiDl~~~e~-l~----~l----~--~~----~~~v 114 (188)
.++..||+++ ++|++. +. ....+. ...+|.+ +++||+|+.+.++ .+ ++ . .+ ..++
T Consensus 94 ~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~--~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv 171 (396)
T PRK00049 94 TGAAQMDGAILVVSAADGPMPQTREHILLAR--QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPII 171 (396)
T ss_pred hhhccCCEEEEEEECCCCCchHHHHHHHHHH--HcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEE
Confidence 4578999997 788753 12 222222 2458976 5899999975322 11 11 1 12 2579
Q ss_pred EEeccccc----------cHHHHHHHHHHhcc
Q psy7063 115 VVSCNMKL----------NLDYLLDIIWLYLS 136 (188)
Q Consensus 115 pISA~~~~----------gld~L~~~I~~~L~ 136 (188)
|+||.++. ++..|+++|.+.++
T Consensus 172 ~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 172 RGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred EeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 99999875 56788888887653
No 221
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.38 E-value=0.0011 Score=49.78 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=47.4
Q ss_pred ceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCCChHHH----HH----Hh---cCCCEEEEeccccc
Q psy7063 61 TLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQISIEEV----DR----IA---RQPNSVVVSCNMKL 122 (188)
Q Consensus 61 ~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~~~e~l----~~----l~---~~~~~vpISA~~~~ 122 (188)
.+++.++ +.|++.. .+...+.. ...|+++|+||+|+.+.++. .. +. ...+++++||+++.
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~--~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~ 157 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEE--LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQ 157 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHHHHHHHHH--cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCC
Confidence 3456665 6665421 12233322 34899999999998754322 11 11 12468899999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|++++.+.|.+++
T Consensus 158 ~~~~l~~~l~~~~ 170 (170)
T cd01876 158 GIDELRALIEKWL 170 (170)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998764
No 222
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.38 E-value=0.00065 Score=64.03 Aligned_cols=76 Identities=25% Similarity=0.303 Sum_probs=50.1
Q ss_pred cccceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEEEEEecCCCCC--hHHH-HHHh--c-----C---CCEEEEecc
Q psy7063 58 SKLTLKNVLF-REDCNA---DELIDVINA-NRVYLPCIYAYNKIDQIS--IEEV-DRIA--R-----Q---PNSVVVSCN 119 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~IlV~NKiDl~~--~e~l-~~l~--~-----~---~~~vpISA~ 119 (188)
.+...+|+++ ++|++. .+-.+.+.. ....+|+++++||+|+.. .+.+ ..+. . + ..++|+||+
T Consensus 154 rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk 233 (587)
T TIGR00487 154 RGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSAL 233 (587)
T ss_pred hhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence 3577888887 777653 222233322 224689999999999863 2222 2221 1 1 248999999
Q ss_pred ccccHHHHHHHHHH
Q psy7063 120 MKLNLDYLLDIIWL 133 (188)
Q Consensus 120 ~~~gld~L~~~I~~ 133 (188)
+|.|+++|.+.|..
T Consensus 234 tGeGI~eLl~~I~~ 247 (587)
T TIGR00487 234 TGDGIDELLDMILL 247 (587)
T ss_pred CCCChHHHHHhhhh
Confidence 99999999998864
No 223
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.38 E-value=0.00058 Score=55.64 Aligned_cols=48 Identities=21% Similarity=0.289 Sum_probs=36.0
Q ss_pred EEEEEecCCCCCh--HHH-------HHHhcCCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 89 CIYAYNKIDQISI--EEV-------DRIARQPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 89 ~IlV~NKiDl~~~--e~l-------~~l~~~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
=++++||+|+.+. .++ ..+....+++++||++|.|+++|.+.|.+.+-
T Consensus 140 d~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 140 DLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred cEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3899999999742 112 22223356899999999999999999998764
No 224
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.37 E-value=0.0011 Score=62.81 Aligned_cols=67 Identities=13% Similarity=0.008 Sum_probs=41.8
Q ss_pred ccceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCCC--hHHH----HHH----h--cCC--CEEEEe
Q psy7063 59 KLTLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQIS--IEEV----DRI----A--RQP--NSVVVS 117 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~~--~e~l----~~l----~--~~~--~~vpIS 117 (188)
++..||+++ ++|++.. +....+.. ..-+|+|+|+||+|+.+ .+.+ ..+ . .+. +++|||
T Consensus 124 ~~~~aD~~llVvda~~g~~~~t~e~~~~~~~-~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiS 202 (632)
T PRK05506 124 GASTADLAIILVDARKGVLTQTRRHSFIASL-LGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPIS 202 (632)
T ss_pred HHHhCCEEEEEEECCCCccccCHHHHHHHHH-hCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEe
Confidence 578999997 7887521 11222221 12367889999999974 2212 111 1 232 489999
Q ss_pred ccccccHHH
Q psy7063 118 CNMKLNLDY 126 (188)
Q Consensus 118 A~~~~gld~ 126 (188)
|++|.|+++
T Consensus 203 A~~g~ni~~ 211 (632)
T PRK05506 203 ALKGDNVVT 211 (632)
T ss_pred cccCCCccc
Confidence 999999974
No 225
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.0012 Score=59.55 Aligned_cols=117 Identities=22% Similarity=0.186 Sum_probs=66.6
Q ss_pred cccceeeEEE-EecCCchHHHHH-----------HHhcCC-CCcEEEEEecCCCCC--hHHHHH-------Hh---cC--
Q psy7063 58 SKLTLKNVLF-REDCNADELIDV-----------INANRV-YLPCIYAYNKIDQIS--IEEVDR-------IA---RQ-- 110 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~~~~-----------l~~~~~-~kP~IlV~NKiDl~~--~e~l~~-------l~---~~-- 110 (188)
.++..||+-+ ++|++..+++.- +..... -...|+++||+|..+ ++.+++ +. .+
T Consensus 104 tGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~ 183 (428)
T COG5256 104 TGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNP 183 (428)
T ss_pred cchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCc
Confidence 4588899887 788764432221 111112 256788999999984 222222 21 12
Q ss_pred --CCEEEEeccccccHHH------------HHHHHHHhcccceeeeCCCCCCCCCCCcEEeccC------CCCCCCCCcc
Q psy7063 111 --PNSVVVSCNMKLNLDY------------LLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG------GTSTKYSPQR 170 (188)
Q Consensus 111 --~~~vpISA~~~~gld~------------L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~g------g~~~k~~~qr 170 (188)
..+|||||..|.|+-+ |+++|- +-+.|-++ +..||.+|-- |-..-+.| |
T Consensus 184 ~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd--------~~~~p~~~--~d~Plr~pI~~v~~i~~~gtv~vG-r 252 (428)
T COG5256 184 KDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD--------QLEPPERP--LDKPLRLPIQDVYSISGIGTVPVG-R 252 (428)
T ss_pred cCCeEEecccccCCcccccCcCCcCccCChHHHHHh--------ccCCCCCC--CCCCeEeEeeeEEEecCCceEEEE-E
Confidence 2489999999999954 444443 12344444 7778888764 22222233 4
Q ss_pred cCCCccccCCCeEEEe
Q psy7063 171 VGLAHVMADEDVIQIV 186 (188)
Q Consensus 171 vg~d~~L~d~Dvv~iv 186 (188)
|--. +|++||.|.|.
T Consensus 253 VEsG-~i~~g~~v~~~ 267 (428)
T COG5256 253 VESG-VIKPGQKVTFM 267 (428)
T ss_pred Eeee-eeccCCEEEEe
Confidence 4332 46777777765
No 226
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.36 E-value=0.0015 Score=54.13 Aligned_cols=81 Identities=12% Similarity=0.037 Sum_probs=50.6
Q ss_pred hhhhcccceeeEEE-EecCCchHHH-HH---H----HhcCCCCcEEEEEecCCCCCh-----------------HHHHHH
Q psy7063 54 DTLPSKLTLKNVLF-REDCNADELI-DV---I----NANRVYLPCIYAYNKIDQISI-----------------EEVDRI 107 (188)
Q Consensus 54 ~~~~~~i~~ADvvl-~~D~s~dd~~-~~---l----~~~~~~kP~IlV~NKiDl~~~-----------------e~l~~l 107 (188)
.+....+.+||++| ++|++..+-. .. + .......|+|+|+||+|+... ++-..+
T Consensus 64 ~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ 143 (222)
T cd04173 64 NVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVL 143 (222)
T ss_pred HHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHH
Confidence 34445578999998 8898754321 11 1 111246899999999998531 111122
Q ss_pred h-cC--CCEEEEecccccc-HHHHHHHHHHh
Q psy7063 108 A-RQ--PNSVVVSCNMKLN-LDYLLDIIWLY 134 (188)
Q Consensus 108 ~-~~--~~~vpISA~~~~g-ld~L~~~I~~~ 134 (188)
. .. ...+.+||+++.+ ++++.+.....
T Consensus 144 ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 144 AKQVGAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred HHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 2 22 2478899999884 98877766553
No 227
>PRK12735 elongation factor Tu; Reviewed
Probab=97.35 E-value=0.001 Score=59.62 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=49.6
Q ss_pred cccceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEE-EEEecCCCCChHH--------HHHHh---cC----CCEEEE
Q psy7063 58 SKLTLKNVLF-REDCNA---DELIDVINA-NRVYLPCI-YAYNKIDQISIEE--------VDRIA---RQ----PNSVVV 116 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~I-lV~NKiDl~~~e~--------l~~l~---~~----~~~vpI 116 (188)
.++..||+.+ ++|++. .+..+.+.. ....+|.+ +|+||+|+.+.++ +..+. .+ ..++|+
T Consensus 94 ~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~ 173 (396)
T PRK12735 94 TGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRG 173 (396)
T ss_pred hhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEec
Confidence 4578999987 788753 122222211 22457866 5799999974322 11111 12 247999
Q ss_pred eccccc----------cHHHHHHHHHHhcc
Q psy7063 117 SCNMKL----------NLDYLLDIIWLYLS 136 (188)
Q Consensus 117 SA~~~~----------gld~L~~~I~~~L~ 136 (188)
||.+|+ +++.|+++|.+.++
T Consensus 174 Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 174 SALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred chhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 999984 67889999887653
No 228
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.34 E-value=0.0027 Score=52.15 Aligned_cols=91 Identities=21% Similarity=0.268 Sum_probs=56.5
Q ss_pred hhHHHHHHhhhhhcccceeeEEEEecCC----chH--HHHHHHhcCCCCcEEEEEecCCCCChHHH----HHHh-----c
Q psy7063 45 YKSARAYEADTLPSKLTLKNVLFREDCN----ADE--LIDVINANRVYLPCIYAYNKIDQISIEEV----DRIA-----R 109 (188)
Q Consensus 45 ~~~~~a~~~~~~~~~i~~ADvvl~~D~s----~dd--~~~~l~~~~~~kP~IlV~NKiDl~~~e~l----~~l~-----~ 109 (188)
+..|+.....+.+..-.=.-+++++|+. ..| +.+.+ .....|+++|+||+|.++..+. .... .
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l--~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~ 167 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFL--LELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHH--HHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC
Confidence 4556555555555332222223367764 212 33344 3357999999999999865332 1111 1
Q ss_pred C-CC--EEEEeccccccHHHHHHHHHHhccc
Q psy7063 110 Q-PN--SVVVSCNMKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 110 ~-~~--~vpISA~~~~gld~L~~~I~~~L~~ 137 (188)
. .. ++..|+.++.|+++|...|.+.+..
T Consensus 168 ~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 168 PPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 1 12 7889999999999999999998764
No 229
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.33 E-value=0.00066 Score=65.94 Aligned_cols=76 Identities=25% Similarity=0.320 Sum_probs=50.5
Q ss_pred ccceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEEEEEecCCCCCh--HHH-HHHh----------cCCCEEEEeccc
Q psy7063 59 KLTLKNVLF-REDCNA---DELIDVINA-NRVYLPCIYAYNKIDQISI--EEV-DRIA----------RQPNSVVVSCNM 120 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~IlV~NKiDl~~~--e~l-~~l~----------~~~~~vpISA~~ 120 (188)
++..+|+++ ++|++. .+..+.+.. .....|+|+|+||+|+... +.+ ..+. ....++++||++
T Consensus 357 ga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt 436 (787)
T PRK05306 357 GAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKT 436 (787)
T ss_pred hhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence 467789987 777753 222233322 2246899999999999632 222 2221 012489999999
Q ss_pred cccHHHHHHHHHHh
Q psy7063 121 KLNLDYLLDIIWLY 134 (188)
Q Consensus 121 ~~gld~L~~~I~~~ 134 (188)
|.|+++|.+.|...
T Consensus 437 G~GI~eLle~I~~~ 450 (787)
T PRK05306 437 GEGIDELLEAILLQ 450 (787)
T ss_pred CCCchHHHHhhhhh
Confidence 99999999998754
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.30 E-value=0.0013 Score=58.74 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=44.1
Q ss_pred ccceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEE-EEEecCCCCChHHH-H----HH----h--cC----CCEEEEe
Q psy7063 59 KLTLKNVLF-REDCNA---DELIDVINA-NRVYLPCI-YAYNKIDQISIEEV-D----RI----A--RQ----PNSVVVS 117 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~I-lV~NKiDl~~~e~l-~----~l----~--~~----~~~vpIS 117 (188)
++..||+++ ++|++. .+..+.+.. ....+|.+ +|+||+|+.+.++. + ++ . .+ .+++++|
T Consensus 95 ~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vS 174 (394)
T TIGR00485 95 GAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGS 174 (394)
T ss_pred HHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECc
Confidence 467899987 888763 221222211 22357766 68999999854321 1 12 1 12 3589999
Q ss_pred ccccc--------cHHHHHHHHHHh
Q psy7063 118 CNMKL--------NLDYLLDIIWLY 134 (188)
Q Consensus 118 A~~~~--------gld~L~~~I~~~ 134 (188)
|.+|. ++..|+++|.+.
T Consensus 175 a~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 175 ALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred cccccccCCchhHhHHHHHHHHHhc
Confidence 99875 234566655543
No 231
>PLN03127 Elongation factor Tu; Provisional
Probab=97.30 E-value=0.0015 Score=59.54 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=46.0
Q ss_pred ccceeeEEE-EecCCc---hHHHHHHHh-cCCCCcE-EEEEecCCCCChHH----HH-HH---h---cC----CCEEEEe
Q psy7063 59 KLTLKNVLF-REDCNA---DELIDVINA-NRVYLPC-IYAYNKIDQISIEE----VD-RI---A---RQ----PNSVVVS 117 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~-IlV~NKiDl~~~e~----l~-~l---~---~~----~~~vpIS 117 (188)
++..||+++ ++|++. ++..+.+.. ....+|. |+|+||+|+.+.++ +. ++ . .+ ..++|+|
T Consensus 144 g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~S 223 (447)
T PLN03127 144 GAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGS 223 (447)
T ss_pred HHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEec
Confidence 456799997 788752 121222211 2345785 68899999985332 11 11 1 12 2367777
Q ss_pred cc---cccc-------HHHHHHHHHHhcc
Q psy7063 118 CN---MKLN-------LDYLLDIIWLYLS 136 (188)
Q Consensus 118 A~---~~~g-------ld~L~~~I~~~L~ 136 (188)
|. +|.| +..|+++|.+.++
T Consensus 224 a~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 224 ALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred cceeecCCCcccccchHHHHHHHHHHhCC
Confidence 65 4555 6788888887654
No 232
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.30 E-value=0.00088 Score=63.09 Aligned_cols=76 Identities=25% Similarity=0.272 Sum_probs=48.8
Q ss_pred cccceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEEEEEecCCCCCh-----------------HH----H-------
Q psy7063 58 SKLTLKNVLF-REDCNA---DELIDVINA-NRVYLPCIYAYNKIDQISI-----------------EE----V------- 104 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~IlV~NKiDl~~~-----------------e~----l------- 104 (188)
.++..||+++ ++|++. ++..+.+.. ....+|+++|+||+|+... .+ +
T Consensus 90 ~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev 169 (586)
T PRK04004 90 RGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYEL 169 (586)
T ss_pred HhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3567899987 788864 222222211 2246899999999998521 00 0
Q ss_pred -HHHh----------------cCCCEEEEeccccccHHHHHHHHHH
Q psy7063 105 -DRIA----------------RQPNSVVVSCNMKLNLDYLLDIIWL 133 (188)
Q Consensus 105 -~~l~----------------~~~~~vpISA~~~~gld~L~~~I~~ 133 (188)
..+. ....++|+||.+|.|+++|++.+..
T Consensus 170 ~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 170 IGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0111 0124799999999999999988764
No 233
>KOG0078|consensus
Probab=97.26 E-value=0.00084 Score=55.27 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=58.3
Q ss_pred chhhHHHHHHhhhhhcccceeeEEE-EecCCchHH-------HHHHHhcC-CCCcEEEEEecCCCCChH-----HHHHHh
Q psy7063 43 YYYKSARAYEADTLPSKLTLKNVLF-REDCNADEL-------IDVINANR-VYLPCIYAYNKIDQISIE-----EVDRIA 108 (188)
Q Consensus 43 l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~dd~-------~~~l~~~~-~~kP~IlV~NKiDl~~~e-----~l~~l~ 108 (188)
+-.++.++...+...+-.+.|+-++ ++|++.+.- ...+.... ...|.++|.||+|+.... .-+.+.
T Consensus 65 iWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA 144 (207)
T KOG0078|consen 65 IWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALA 144 (207)
T ss_pred EEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHH
Confidence 5557777777777777789999997 899885431 22222222 368999999999987532 223332
Q ss_pred -cC-CCEEEEeccccccHHHHH
Q psy7063 109 -RQ-PNSVVVSCNMKLNLDYLL 128 (188)
Q Consensus 109 -~~-~~~vpISA~~~~gld~L~ 128 (188)
++ -..+.+||++|.|+++.-
T Consensus 145 ~e~G~~F~EtSAk~~~NI~eaF 166 (207)
T KOG0078|consen 145 REYGIKFFETSAKTNFNIEEAF 166 (207)
T ss_pred HHhCCeEEEccccCCCCHHHHH
Confidence 22 246779999999998833
No 234
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.26 E-value=0.0018 Score=58.42 Aligned_cols=68 Identities=15% Similarity=0.025 Sum_probs=41.6
Q ss_pred ccceeeEEE-EecCCchH------HHHH--HHhcCCCCcEEEEEecCCCCC--hHHH-------HHHh---cC----CCE
Q psy7063 59 KLTLKNVLF-REDCNADE------LIDV--INANRVYLPCIYAYNKIDQIS--IEEV-------DRIA---RQ----PNS 113 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd------~~~~--l~~~~~~kP~IlV~NKiDl~~--~e~l-------~~l~---~~----~~~ 113 (188)
++..||+++ ++|++..+ ..+. +.......|+|+|+||+|+.+ .+.+ ..+. .+ ..+
T Consensus 105 ~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~ 184 (426)
T TIGR00483 105 GASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPF 184 (426)
T ss_pred hhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceE
Confidence 468899997 78886431 1111 111112357889999999973 2212 1111 11 247
Q ss_pred EEEeccccccHHH
Q psy7063 114 VVVSCNMKLNLDY 126 (188)
Q Consensus 114 vpISA~~~~gld~ 126 (188)
+++||++|.|+++
T Consensus 185 i~iSA~~g~ni~~ 197 (426)
T TIGR00483 185 IPISAWNGDNVIK 197 (426)
T ss_pred EEeeccccccccc
Confidence 9999999999975
No 235
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.25 E-value=0.00066 Score=55.18 Aligned_cols=49 Identities=16% Similarity=0.081 Sum_probs=36.7
Q ss_pred CCcEEEEEecCCCCCh--HHH----HHHh---cCCCEEEEeccccccHHHHHHHHHHh
Q psy7063 86 YLPCIYAYNKIDQISI--EEV----DRIA---RQPNSVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 86 ~kP~IlV~NKiDl~~~--e~l----~~l~---~~~~~vpISA~~~~gld~L~~~I~~~ 134 (188)
.+|.++++||+|+.+. ..+ +.+. +..+++++||+++.|+++|.+.+.++
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4688999999999742 112 1121 23469999999999999999998875
No 236
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.0012 Score=58.64 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=41.9
Q ss_pred cccceeeEEE-EecCCchHHHH-----HHHhcCCCCcEEEEEecCCCCCh--HHHHHH-------h---c--CCCEEEEe
Q psy7063 58 SKLTLKNVLF-REDCNADELID-----VINANRVYLPCIYAYNKIDQISI--EEVDRI-------A---R--QPNSVVVS 117 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~~~-----~l~~~~~~kP~IlV~NKiDl~~~--e~l~~l-------~---~--~~~~vpIS 117 (188)
.+...||+.+ ++|+...-+.+ ++.....-+.+++++||+|+.+- +.++.+ . . ....||+|
T Consensus 105 TGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiS 184 (431)
T COG2895 105 TGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPIS 184 (431)
T ss_pred cccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEech
Confidence 3688999997 89986321111 11111123568889999999853 323222 1 1 12589999
Q ss_pred ccccccH
Q psy7063 118 CNMKLNL 124 (188)
Q Consensus 118 A~~~~gl 124 (188)
|..|.|+
T Consensus 185 Al~GDNV 191 (431)
T COG2895 185 ALLGDNV 191 (431)
T ss_pred hccCCcc
Confidence 9999998
No 237
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.17 E-value=0.0011 Score=53.96 Aligned_cols=68 Identities=13% Similarity=-0.036 Sum_probs=40.6
Q ss_pred ccceeeEEE-EecCCch---HHHHHHH-hcCCC-CcEEEEEecCCCCC--hHH-------HHHHh---cC--CCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNAD---ELIDVIN-ANRVY-LPCIYAYNKIDQIS--IEE-------VDRIA---RQ--PNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d---d~~~~l~-~~~~~-kP~IlV~NKiDl~~--~e~-------l~~l~---~~--~~~vpISA 118 (188)
++..||+++ ++|++.. ....... ..... .|+|+|+||+|+.. .+. +..+. .+ .+++++||
T Consensus 97 ~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA 176 (208)
T cd04166 97 GASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISA 176 (208)
T ss_pred hhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeC
Confidence 478899998 8888632 1111111 11123 45777999999873 211 11111 12 24899999
Q ss_pred cccccHHH
Q psy7063 119 NMKLNLDY 126 (188)
Q Consensus 119 ~~~~gld~ 126 (188)
++|.|+++
T Consensus 177 ~~g~ni~~ 184 (208)
T cd04166 177 LDGDNVVS 184 (208)
T ss_pred CCCCCCcc
Confidence 99999975
No 238
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.16 E-value=0.0029 Score=56.85 Aligned_cols=67 Identities=13% Similarity=0.023 Sum_probs=41.7
Q ss_pred ccceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCCCh-HH-H----HHH----h--cCC--CEEEEe
Q psy7063 59 KLTLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQISI-EE-V----DRI----A--RQP--NSVVVS 117 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~~~-e~-l----~~l----~--~~~--~~vpIS 117 (188)
++..||+++ ++|++.. +....+... .-+++++|+||+|+.+. ++ + +.+ . .+. +++|||
T Consensus 100 ~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiS 178 (406)
T TIGR02034 100 GASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLS 178 (406)
T ss_pred HHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEee
Confidence 578999997 7887521 112222221 22468889999998742 21 1 111 1 122 489999
Q ss_pred ccccccHHH
Q psy7063 118 CNMKLNLDY 126 (188)
Q Consensus 118 A~~~~gld~ 126 (188)
|.+|.|++.
T Consensus 179 A~~g~ni~~ 187 (406)
T TIGR02034 179 ALKGDNVVS 187 (406)
T ss_pred cccCCCCcc
Confidence 999999986
No 239
>KOG0094|consensus
Probab=97.14 E-value=0.003 Score=51.93 Aligned_cols=100 Identities=18% Similarity=0.108 Sum_probs=67.8
Q ss_pred chhhHHHHHHhhhhhcccceeeEEE-EecCCch----H----HHHHHHhcCC-CCcEEEEEecCCCCChHHHH-----HH
Q psy7063 43 YYYKSARAYEADTLPSKLTLKNVLF-REDCNAD----E----LIDVINANRV-YLPCIYAYNKIDQISIEEVD-----RI 107 (188)
Q Consensus 43 l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~d----d----~~~~l~~~~~-~kP~IlV~NKiDl~~~e~l~-----~l 107 (188)
|=.+|=+|...-+..+=+++|.|.+ +.|++.- . +.+....+-. +.-+++|.||.||.++.++. ..
T Consensus 75 lWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~k 154 (221)
T KOG0094|consen 75 LWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERK 154 (221)
T ss_pred EEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHH
Confidence 3445556666666666799999997 8898632 1 1222222222 35567899999999765431 11
Q ss_pred h-cC-CCEEEEeccccccHHHHHHHHHHhcccceeee
Q psy7063 108 A-RQ-PNSVVVSCNMKLNLDYLLDIIWLYLSLIRVYT 142 (188)
Q Consensus 108 ~-~~-~~~vpISA~~~~gld~L~~~I~~~L~~irVY~ 142 (188)
. +. ...+.+||++|.|+..|-..|...|+-+-++-
T Consensus 155 Akel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~~~ 191 (221)
T KOG0094|consen 155 AKELNAEFIETSAKAGENVKQLFRRIAAALPGMEVLE 191 (221)
T ss_pred HHHhCcEEEEecccCCCCHHHHHHHHHHhccCccccc
Confidence 1 22 35788999999999999999999998777755
No 240
>KOG0092|consensus
Probab=97.11 E-value=0.0012 Score=53.92 Aligned_cols=80 Identities=16% Similarity=0.059 Sum_probs=51.9
Q ss_pred cceeeEEE-EecCCchHHHHHH----Hh--cCCC--CcEEEEEecCCCCChH-----HHHHHhc-C-CCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADELIDVI----NA--NRVY--LPCIYAYNKIDQISIE-----EVDRIAR-Q-PNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~~~l----~~--~~~~--kP~IlV~NKiDl~~~e-----~l~~l~~-~-~~~vpISA~~~~g 123 (188)
.++|+..| +.|+|..+-...+ .. .... .-+-+|.||+|+...- +...+.. . .-.+..||++|.|
T Consensus 75 yRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~N 154 (200)
T KOG0092|consen 75 YRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGEN 154 (200)
T ss_pred ecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccC
Confidence 67888887 8899865422221 11 1223 2344599999998632 2222221 1 2367799999999
Q ss_pred HHHHHHHHHHhcccce
Q psy7063 124 LDYLLDIIWLYLSLIR 139 (188)
Q Consensus 124 ld~L~~~I~~~L~~ir 139 (188)
+++|...|.+.++..+
T Consensus 155 v~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 155 VNEIFQAIAEKLPCSD 170 (200)
T ss_pred HHHHHHHHHHhccCcc
Confidence 9999999999986443
No 241
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.06 E-value=0.0035 Score=57.14 Aligned_cols=69 Identities=13% Similarity=0.003 Sum_probs=40.9
Q ss_pred cccceeeEEE-EecCCch----------HHHHHHHh-cCCCCc-EEEEEecCCCCC----hHHH----HHH----h--cC
Q psy7063 58 SKLTLKNVLF-REDCNAD----------ELIDVINA-NRVYLP-CIYAYNKIDQIS----IEEV----DRI----A--RQ 110 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d----------d~~~~l~~-~~~~kP-~IlV~NKiDl~~----~e~l----~~l----~--~~ 110 (188)
.++..||+.+ ++|++.. ...+.+.. ....+| +|+++||+|... .+.+ +.+ . .+
T Consensus 104 ~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~ 183 (446)
T PTZ00141 104 TGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGY 183 (446)
T ss_pred HhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCC
Confidence 3578899987 7887632 22222211 223566 568999999432 1222 111 1 12
Q ss_pred ----CCEEEEeccccccHHH
Q psy7063 111 ----PNSVVVSCNMKLNLDY 126 (188)
Q Consensus 111 ----~~~vpISA~~~~gld~ 126 (188)
..+||+||.+|.|+.+
T Consensus 184 ~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 184 NPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred CcccceEEEeecccCCCccc
Confidence 2479999999999964
No 242
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0024 Score=55.65 Aligned_cols=103 Identities=19% Similarity=0.199 Sum_probs=59.3
Q ss_pred HHhcCCCCcE-EEEEecCCCCChHHHH--------HH---hcCC----CEEEEeccc-cccHHHHHHHHHHhcccceeee
Q psy7063 80 INANRVYLPC-IYAYNKIDQISIEEVD--------RI---ARQP----NSVVVSCNM-KLNLDYLLDIIWLYLSLIRVYT 142 (188)
Q Consensus 80 l~~~~~~kP~-IlV~NKiDl~~~e~l~--------~l---~~~~----~~vpISA~~-~~gld~L~~~I~~~L~~irVY~ 142 (188)
+...+...|. ++++||+|+.+.+++. .| +.|+ +++.-||.. ..|-..-.+.|.++++-+--|-
T Consensus 121 LlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 121 LLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred hhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence 3334456765 5569999999754431 12 1343 244455543 3344444455555555555555
Q ss_pred CCCCCCCCCCCcEEeccC------CCCCCCCCcccCCCccccCCCeEEEe
Q psy7063 143 KKPGAPPDFDDGLILRKG------GTSTKYSPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 143 k~~g~~~d~~~p~il~~g------g~~~k~~~qrvg~d~~L~d~Dvv~iv 186 (188)
..|-+. ..+||++|-. |+-...+| ||-+. .|+-||.|+||
T Consensus 201 p~Per~--~dkPflmpvEdvfsIsgrgtvvtG-rVeRG-~lkvg~eveiv 246 (394)
T COG0050 201 PTPERD--IDKPFLMPVEDVFSISGRGTVVTG-RVERG-ILKVGEEVEIV 246 (394)
T ss_pred CCCCCc--ccccccccceeeEEEcCceeEEEE-EEeee-eeccCCEEEEe
Confidence 555444 8899999986 43222244 45443 67889999987
No 243
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.02 E-value=0.0012 Score=57.15 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=36.8
Q ss_pred CcEEEEEecCCCCCh--HHHHH----H---hcCCCEEEEeccccccHHHHHHHHHHh
Q psy7063 87 LPCIYAYNKIDQISI--EEVDR----I---ARQPNSVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 87 kP~IlV~NKiDl~~~--e~l~~----l---~~~~~~vpISA~~~~gld~L~~~I~~~ 134 (188)
.+-++|+||+|+.+. .+++. + .++.+++++||++|.|+++|.+.|.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 566999999999862 22322 2 235579999999999999999998764
No 244
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.98 E-value=0.0042 Score=49.53 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=26.9
Q ss_pred eEEE-EecCCc------hHHHHHHHhcCCCCcEEEEEecCCCCChHHH
Q psy7063 64 NVLF-REDCNA------DELIDVINANRVYLPCIYAYNKIDQISIEEV 104 (188)
Q Consensus 64 Dvvl-~~D~s~------dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~l 104 (188)
|+++ ++|+.. +++.+.+......+|+|+|+||+|+.+.+.+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l 48 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENV 48 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHH
Confidence 6776 777642 2344442112246999999999999876654
No 245
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.97 E-value=0.0048 Score=51.75 Aligned_cols=122 Identities=18% Similarity=0.132 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccceeEEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCC----chHHH
Q psy7063 3 ILEKISEIEKEIARTQKNKVLAYCWSKGTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCN----ADELI 77 (188)
Q Consensus 3 i~~~i~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s----~dd~~ 77 (188)
+++++.+|++++.+.+. .--|++.|+.+.-...+.......+.+.. ...-+++ ++|.. ...+.
T Consensus 75 l~~~~d~l~~~i~~~~~---------~y~l~DtPGQiElf~~~~~~~~i~~~L~~---~~~~~~v~LvD~~~~~~~~~f~ 142 (238)
T PF03029_consen 75 LEENIDWLDEEIEKYED---------DYLLFDTPGQIELFTHSDSGRKIVERLQK---NGRLVVVFLVDSSFCSDPSKFV 142 (238)
T ss_dssp HGGGHHHHHHHHHHHH----------SEEEEE--SSHHHHHHSHHHHHHHHTSSS-------EEEEEE-GGG-SSHHHHH
T ss_pred HHHHHHHHHHHHhhcCC---------cEEEEeCCCCEEEEEechhHHHHHHHHhh---hcceEEEEEEecccccChhhHH
Confidence 35667777777775522 45678888876555555666555555554 1222233 67754 12222
Q ss_pred HH-HH----hcCCCCcEEEEEecCCCCChH--H-H---------------------HHHh----cC--C-CEEEEecccc
Q psy7063 78 DV-IN----ANRVYLPCIYAYNKIDQISIE--E-V---------------------DRIA----RQ--P-NSVVVSCNMK 121 (188)
Q Consensus 78 ~~-l~----~~~~~kP~IlV~NKiDl~~~e--~-l---------------------~~l~----~~--~-~~vpISA~~~ 121 (188)
.. +. ..+...|.|.|+||+|+.+.. . + ..+. .+ . ..+|+|+.++
T Consensus 143 s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~ 222 (238)
T PF03029_consen 143 SSLLLSLSIMLRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDG 222 (238)
T ss_dssp HHHHHHHHHHHHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTT
T ss_pred HHHHHHHHHHhhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCCh
Confidence 22 11 123479999999999998711 0 1 1111 12 2 5899999999
Q ss_pred ccHHHHHHHHHHhcc
Q psy7063 122 LNLDYLLDIIWLYLS 136 (188)
Q Consensus 122 ~gld~L~~~I~~~L~ 136 (188)
.|+++|...|-+.++
T Consensus 223 ~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 223 EGMEELLAAIDKANQ 237 (238)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887654
No 246
>PRK10218 GTP-binding protein; Provisional
Probab=96.96 E-value=0.0024 Score=60.44 Aligned_cols=78 Identities=18% Similarity=0.095 Sum_probs=50.4
Q ss_pred ccceeeEEE-EecCCch---HHHHHHH-hcCCCCcEEEEEecCCCCCh--HH-HHHH---h-c--------CCCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNAD---ELIDVIN-ANRVYLPCIYAYNKIDQISI--EE-VDRI---A-R--------QPNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d---d~~~~l~-~~~~~kP~IlV~NKiDl~~~--e~-l~~l---~-~--------~~~~vpISA 118 (188)
.+..||.++ ++|++.. +....+. .....+|.|+++||+|+... +. ++.+ . . ..+++++||
T Consensus 88 ~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA 167 (607)
T PRK10218 88 VMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASA 167 (607)
T ss_pred HHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEh
Confidence 468899997 7887632 1111111 12356899999999998632 21 2211 1 1 124899999
Q ss_pred cccc----------cHHHHHHHHHHhcc
Q psy7063 119 NMKL----------NLDYLLDIIWLYLS 136 (188)
Q Consensus 119 ~~~~----------gld~L~~~I~~~L~ 136 (188)
.+|+ |+..|++.|.++++
T Consensus 168 ~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 168 LNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred hcCcccCCccccccchHHHHHHHHHhCC
Confidence 9998 57888888888775
No 247
>PLN03126 Elongation factor Tu; Provisional
Probab=96.93 E-value=0.0085 Score=55.22 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=38.2
Q ss_pred cccceeeEEE-EecCCch---HHHHHHH-hcCCCCc-EEEEEecCCCCChHHH-H----HH----hc--C----CCEEEE
Q psy7063 58 SKLTLKNVLF-REDCNAD---ELIDVIN-ANRVYLP-CIYAYNKIDQISIEEV-D----RI----AR--Q----PNSVVV 116 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d---d~~~~l~-~~~~~kP-~IlV~NKiDl~~~e~l-~----~l----~~--~----~~~vpI 116 (188)
.++..+|+.+ ++|++.. .-.+.+. .....+| +|+++||+|+.+.+++ + ++ .. + ..++|+
T Consensus 163 ~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~ 242 (478)
T PLN03126 163 TGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISG 242 (478)
T ss_pred HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEE
Confidence 3567899987 7886521 1112211 1224578 6789999999864321 1 11 11 2 247899
Q ss_pred eccccc
Q psy7063 117 SCNMKL 122 (188)
Q Consensus 117 SA~~~~ 122 (188)
||.+|.
T Consensus 243 Sa~~g~ 248 (478)
T PLN03126 243 SALLAL 248 (478)
T ss_pred Eccccc
Confidence 998875
No 248
>KOG2484|consensus
Probab=96.89 E-value=0.002 Score=57.87 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=37.7
Q ss_pred ccceeeEEE-EecCC------chHHHHHHHhcCCCCcEEEEEecCCCCChHHHHHH
Q psy7063 59 KLTLKNVLF-REDCN------ADELIDVINANRVYLPCIYAYNKIDQISIEEVDRI 107 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s------~dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~l 107 (188)
-+..+|||| +.|+. ..++++++.....+|..|+|+||+|+++.+.++.+
T Consensus 143 vve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~W 198 (435)
T KOG2484|consen 143 VVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKW 198 (435)
T ss_pred HHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHH
Confidence 367799999 88874 34566766544456999999999999998887655
No 249
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.87 E-value=0.0037 Score=59.05 Aligned_cols=78 Identities=24% Similarity=0.189 Sum_probs=51.1
Q ss_pred ccceeeEEE-EecCCch---HHHHHHHh-cCCCCcEEEEEecCCCCCh--HH-HHH---Hh-c--------CCCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNAD---ELIDVINA-NRVYLPCIYAYNKIDQISI--EE-VDR---IA-R--------QPNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d---d~~~~l~~-~~~~kP~IlV~NKiDl~~~--e~-l~~---l~-~--------~~~~vpISA 118 (188)
.+..||.++ ++|++.. .....+.. ....+|.|+|+||+|+... ++ +.. +. . ..+++++||
T Consensus 84 ~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA 163 (594)
T TIGR01394 84 VLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASG 163 (594)
T ss_pred HHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechh
Confidence 467889997 7888632 21111211 2246899999999998632 22 221 11 0 124789999
Q ss_pred cccc----------cHHHHHHHHHHhcc
Q psy7063 119 NMKL----------NLDYLLDIIWLYLS 136 (188)
Q Consensus 119 ~~~~----------gld~L~~~I~~~L~ 136 (188)
++|+ |++.|++.|.+.++
T Consensus 164 ~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 164 RAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred hcCcccccCcccccCHHHHHHHHHHhCC
Confidence 9996 79999999998875
No 250
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=96.84 E-value=0.0065 Score=46.20 Aligned_cols=76 Identities=18% Similarity=0.146 Sum_probs=50.9
Q ss_pred cceeeEEE-EecCCchHHH-------HHHHhcCC-CCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADELI-------DVINANRV-YLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~-------~~l~~~~~-~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~~g 123 (188)
+.++|.++ +.|++..+-. ..+..... ..|+++|+||.|+... ++...+. .. ...+.+||+++.|
T Consensus 69 ~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 69 YRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGEN 148 (162)
T ss_dssp HTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTT
T ss_pred ccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCC
Confidence 68899997 7888754322 22222233 5899999999998652 2223232 22 3578899999999
Q ss_pred HHHHHHHHHHhc
Q psy7063 124 LDYLLDIIWLYL 135 (188)
Q Consensus 124 ld~L~~~I~~~L 135 (188)
+.++...+.+.+
T Consensus 149 v~~~f~~~i~~i 160 (162)
T PF00071_consen 149 VKEIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999887776643
No 251
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=96.82 E-value=0.0077 Score=48.45 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=50.8
Q ss_pred cccceeeEEE-EecCC--chH--HHHHHHhcCCCCcEEEEEecCCCCCh-H-----------H-HHHH----h-------
Q psy7063 58 SKLTLKNVLF-REDCN--ADE--LIDVINANRVYLPCIYAYNKIDQISI-E-----------E-VDRI----A------- 108 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s--~dd--~~~~l~~~~~~kP~IlV~NKiDl~~~-e-----------~-l~~l----~------- 108 (188)
..+.++|+++ +.+.. ..| +...+.. ..+|+++|+||+|+... + . ++.+ .
T Consensus 76 ~~~~~~d~~l~v~~~~~~~~d~~~~~~l~~--~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 76 MKFSEYDFFIIISSTRFSSNDVKLAKAIQC--MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred hCccCcCEEEEEeCCCCCHHHHHHHHHHHH--hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 3467899997 44432 222 2333332 36899999999998521 1 1 2111 1
Q ss_pred -cCCCEEEEecc--ccccHHHHHHHHHHhccc
Q psy7063 109 -RQPNSVVVSCN--MKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 109 -~~~~~vpISA~--~~~gld~L~~~I~~~L~~ 137 (188)
..+.++++|+. .+.|+..|.+.|...|+.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 13468999998 679999999999988763
No 252
>KOG1491|consensus
Probab=96.81 E-value=0.0066 Score=53.72 Aligned_cols=118 Identities=20% Similarity=0.284 Sum_probs=69.2
Q ss_pred EecCCchHHHHHHHh-cCCCCcEEEEEecCCCCC--hH--HHHHHh----c---CCCEEEEeccccc-------------
Q psy7063 68 REDCNADELIDVINA-NRVYLPCIYAYNKIDQIS--IE--EVDRIA----R---QPNSVVVSCNMKL------------- 122 (188)
Q Consensus 68 ~~D~s~dd~~~~l~~-~~~~kP~IlV~NKiDl~~--~e--~l~~l~----~---~~~~vpISA~~~~------------- 122 (188)
..+|+++++.-.-.. ....+|+++++|++|... .. .+.... . ....+|.|+.-+.
T Consensus 205 ~~~W~d~eieiln~~~lLt~kP~Vyl~N~se~dy~r~knk~l~~i~~w~~~~~~g~~~i~fs~~~e~ql~~~~~EE~~~~ 284 (391)
T KOG1491|consen 205 KEKWNDEEIEILNKLFLLTAKPTVYLLNLSEHDYARKKNKKLPKIKEWVDEVSPGDVVIVFSAAFESQLFELYEEEAVKE 284 (391)
T ss_pred hhhcCHHHHHHHHHhhhhhcCceEEEEecCcchhhhHHHHHHhhhhhhhhccCCCCeEEEehHHHHHHhhccCHHHHHHH
Confidence 456777654332211 124699999999999752 11 122221 1 1247888875432
Q ss_pred --------cHHHHHHHHHHhcccceeeeCCCCCC-------------------CCCCCcEEeccC----------CC-CC
Q psy7063 123 --------NLDYLLDIIWLYLSLIRVYTKKPGAP-------------------PDFDDGLILRKG----------GT-ST 164 (188)
Q Consensus 123 --------gld~L~~~I~~~L~~irVY~k~~g~~-------------------~d~~~p~il~~g----------g~-~~ 164 (188)
.|.++...-++.|+++.-||-.+-.+ .|+.+.|++-.- +. .+
T Consensus 285 ~~~~~~~s~L~~iI~~~~~~L~li~fFt~G~~eV~~WtIr~gt~ap~aagvihsdf~k~Fi~aev~~f~D~~~~k~e~a~ 364 (391)
T KOG1491|consen 285 LEDLGDSSALPKIIKTGYSALNLIVFFTCGEDEVRAWTIRKGTKAPQAAGVIHSDFEKGFIMAEVMKFEDFKEYKSESAC 364 (391)
T ss_pred HHhcccccchhHHHHHHHHhhCceEEEeeCCchheeeehhhccccccccceeeehhhhhccccceeeeehHHHhcCHHHH
Confidence 33557777888999999999433222 144444544321 11 11
Q ss_pred CCCC--cccCCCccccCCCeEEE
Q psy7063 165 KYSP--QRVGLAHVMADEDVIQI 185 (188)
Q Consensus 165 k~~~--qrvg~d~~L~d~Dvv~i 185 (188)
|--| .++|++|+++||||+-+
T Consensus 365 k~~Gk~~~~Gk~yiVedGDIi~F 387 (391)
T KOG1491|consen 365 KAAGKYRQVGKEYIVEDGDIIFF 387 (391)
T ss_pred HHhcchhhcCceeeecCCCEEEE
Confidence 1111 47999999999999864
No 253
>KOG0084|consensus
Probab=96.71 E-value=0.01 Score=48.67 Aligned_cols=90 Identities=18% Similarity=0.080 Sum_probs=56.6
Q ss_pred hHHHHHHhhhhhcccceeeEEE-EecCCchH-------HHHHHHhc-CCCCcEEEEEecCCCCCh-----HHHHHHh---
Q psy7063 46 KSARAYEADTLPSKLTLKNVLF-REDCNADE-------LIDVINAN-RVYLPCIYAYNKIDQISI-----EEVDRIA--- 108 (188)
Q Consensus 46 ~~~~a~~~~~~~~~i~~ADvvl-~~D~s~dd-------~~~~l~~~-~~~kP~IlV~NKiDl~~~-----e~l~~l~--- 108 (188)
+|-+|...+...+=-++|+-+| +.|+|... .+..+... ....|.++|.||+|+.+. ++.+.+.
T Consensus 65 TAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~ 144 (205)
T KOG0084|consen 65 TAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADEL 144 (205)
T ss_pred ccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhc
Confidence 3334444455555589999997 89988432 11222211 134799999999998643 2233332
Q ss_pred cCCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 109 RQPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 109 ~~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
..+...++||+.+.|+++....|...|
T Consensus 145 ~~~~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 145 GIPIFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred CCcceeecccCCccCHHHHHHHHHHHH
Confidence 122378899999999988776666554
No 254
>PLN00043 elongation factor 1-alpha; Provisional
Probab=96.71 E-value=0.014 Score=53.25 Aligned_cols=69 Identities=13% Similarity=-0.009 Sum_probs=40.9
Q ss_pred cccceeeEEE-EecCCch----------HHHHHHH-hcCCCCc-EEEEEecCCCCC----hHHH----HHH----h--cC
Q psy7063 58 SKLTLKNVLF-REDCNAD----------ELIDVIN-ANRVYLP-CIYAYNKIDQIS----IEEV----DRI----A--RQ 110 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d----------d~~~~l~-~~~~~kP-~IlV~NKiDl~~----~e~l----~~l----~--~~ 110 (188)
.++..||..+ ++|++.. ...+.+. .....+| +|+++||+|+.+ .+.+ +++ . .+
T Consensus 104 ~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~ 183 (447)
T PLN00043 104 TGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 183 (447)
T ss_pred hhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 3478899987 7887642 2222221 1223565 688899999862 1111 112 1 11
Q ss_pred ----CCEEEEeccccccHHH
Q psy7063 111 ----PNSVVVSCNMKLNLDY 126 (188)
Q Consensus 111 ----~~~vpISA~~~~gld~ 126 (188)
..++|+||.+|+|+.+
T Consensus 184 ~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 184 NPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CcccceEEEEeccccccccc
Confidence 2479999999999853
No 255
>KOG0093|consensus
Probab=96.67 E-value=0.0059 Score=48.30 Aligned_cols=82 Identities=12% Similarity=0.025 Sum_probs=52.4
Q ss_pred HhhhhhcccceeeEEE-EecCCchHHHHHHHh----cC----CCCcEEEEEecCCCCChHHH-----HHHh-cC-CCEEE
Q psy7063 52 EADTLPSKLTLKNVLF-REDCNADELIDVINA----NR----VYLPCIYAYNKIDQISIEEV-----DRIA-RQ-PNSVV 115 (188)
Q Consensus 52 ~~~~~~~~i~~ADvvl-~~D~s~dd~~~~l~~----~~----~~kP~IlV~NKiDl~~~e~l-----~~l~-~~-~~~vp 115 (188)
..++...-++.|+-.| +.|.+.++-...++. .+ .+.|+|+|+||+|+.++..+ ..+. .. .+.+.
T Consensus 83 yrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFE 162 (193)
T KOG0093|consen 83 YRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFE 162 (193)
T ss_pred hhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhh
Confidence 3344444588899887 789986653333221 11 36899999999998654211 1221 11 24788
Q ss_pred EeccccccHHHHHHHHHH
Q psy7063 116 VSCNMKLNLDYLLDIIWL 133 (188)
Q Consensus 116 ISA~~~~gld~L~~~I~~ 133 (188)
.||+.+.|++.+-+++..
T Consensus 163 tSaK~NinVk~~Fe~lv~ 180 (193)
T KOG0093|consen 163 TSAKENINVKQVFERLVD 180 (193)
T ss_pred hcccccccHHHHHHHHHH
Confidence 999999999876666544
No 256
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.53 E-value=0.014 Score=47.22 Aligned_cols=76 Identities=12% Similarity=-0.003 Sum_probs=47.8
Q ss_pred cceeeEEE-EecCCchHHH-------HHHHhcCCCCcEEEEEecCCCCChH---HHHHHh-c-CCCEEEEeccccccHHH
Q psy7063 60 LTLKNVLF-REDCNADELI-------DVINANRVYLPCIYAYNKIDQISIE---EVDRIA-R-QPNSVVVSCNMKLNLDY 126 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~-------~~l~~~~~~kP~IlV~NKiDl~~~e---~l~~l~-~-~~~~vpISA~~~~gld~ 126 (188)
..+++.++ +.|++...-. ..+.......|+++++||+|+.... +...+. . ....+++||++|.|+++
T Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 79 YIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEK 158 (215)
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 45677776 7888743211 1111122468999999999985321 111121 1 12478999999999999
Q ss_pred HHHHHHHhc
Q psy7063 127 LLDIIWLYL 135 (188)
Q Consensus 127 L~~~I~~~L 135 (188)
+...|.+.+
T Consensus 159 ~f~~ia~~l 167 (215)
T PTZ00132 159 PFLWLARRL 167 (215)
T ss_pred HHHHHHHHH
Confidence 887777654
No 257
>KOG0461|consensus
Probab=96.51 E-value=0.027 Score=50.30 Aligned_cols=110 Identities=12% Similarity=0.090 Sum_probs=63.4
Q ss_pred EEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCch---H-HHHHHHhcCCCCcEEEEEecCCCCChH---
Q psy7063 31 TFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNAD---E-LIDVINANRVYLPCIYAYNKIDQISIE--- 102 (188)
Q Consensus 31 ~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~d---d-~~~~l~~~~~~kP~IlV~NKiDl~~~e--- 102 (188)
+|++-|+ -..|.++.++ +..--|+.+ ++|+... . -+-.+.+...-+..++|+||+|..++.
T Consensus 73 tlvDCPG--HasLIRtiig---------gaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ 141 (522)
T KOG0461|consen 73 TLVDCPG--HASLIRTIIG---------GAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRA 141 (522)
T ss_pred EEEeCCC--cHHHHHHHHh---------hhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhh
Confidence 6776665 1223445553 344456665 7787521 1 111222222346789999999987541
Q ss_pred -HHHHH----h------cC---CCEEEEecccc----ccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccC
Q psy7063 103 -EVDRI----A------RQ---PNSVVVSCNMK----LNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG 160 (188)
Q Consensus 103 -~l~~l----~------~~---~~~vpISA~~~----~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~g 160 (188)
.++.+ . .| .+++++||+.| +++.+|++++.+..- .|-+ |...||++--+
T Consensus 142 ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if-------~P~R--d~~gpflm~vD 208 (522)
T KOG0461|consen 142 SKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIF-------EPKR--DEEGPFLMAVD 208 (522)
T ss_pred hHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhc-------CCCc--CCCCCeEEEee
Confidence 23222 1 12 35899999999 888999988887542 1222 35667777654
No 258
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=96.50 E-value=0.0028 Score=60.77 Aligned_cols=46 Identities=30% Similarity=0.452 Sum_probs=35.8
Q ss_pred ccceeeeCCCCCCCCCCCcEEeccC--------------CC---CCCCCCcccCCCccccCCCeEEEeeC
Q psy7063 136 SLIRVYTKKPGAPPDFDDGLILRKG--------------GT---STKYSPQRVGLAHVMADEDVIQIVKK 188 (188)
Q Consensus 136 ~~irVY~k~~g~~~d~~~p~il~~g--------------g~---~~k~~~qrvg~d~~L~d~Dvv~iv~~ 188 (188)
+.|-||| |+| +++.||+| |. .|+..|++|++||+|++||+|+|++.
T Consensus 360 ~~i~vfT-PkG------~~~~lp~gst~~DfAy~ih~~~g~~~~~a~vng~~v~l~~~l~~gd~vei~t~ 422 (683)
T TIGR00691 360 EEIYVFT-PKG------DVVELPSGSTPVDFAYAVHTDVGNKCTGAKVNGKIVPLDKELENGDVVEIITG 422 (683)
T ss_pred CceEEEC-CCC------eEEEcCCCCCHHHHHHHHhHHhHhceeEEEECCEECCCCccCCCCCEEEEEeC
Confidence 4566666 223 37899999 33 55688999999999999999999873
No 259
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=96.48 E-value=0.0037 Score=60.39 Aligned_cols=45 Identities=27% Similarity=0.357 Sum_probs=36.8
Q ss_pred ccceeeeCCCCCCCCCCCcEEeccC--------------CC---CCCCCCcccCCCccccCCCeEEEee
Q psy7063 136 SLIRVYTKKPGAPPDFDDGLILRKG--------------GT---STKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 136 ~~irVY~k~~g~~~d~~~p~il~~g--------------g~---~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
+.|.||| |+| +++.||+| |. .||++|++|+.||+|++||+|+|++
T Consensus 404 d~V~VfT-PkG------~~~~Lp~gaT~lDfAy~iHt~iG~~~~gAkvng~~v~l~~~L~~GD~VeIit 465 (743)
T PRK10872 404 DRVYVFT-PKG------DVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIIT 465 (743)
T ss_pred CeEEEEC-CCC------CeEEcCCCCcHHHHHHHHhHHHHhhceEEEECCEECCCCcCCCCCCEEEEEe
Confidence 5677777 334 38999999 33 5678999999999999999999986
No 260
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.46 E-value=0.022 Score=46.25 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=26.7
Q ss_pred cccceeeEEE-EecCCch---HHHHHHHh-cCCCCcEEEEEecCCCC
Q psy7063 58 SKLTLKNVLF-REDCNAD---ELIDVINA-NRVYLPCIYAYNKIDQI 99 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d---d~~~~l~~-~~~~kP~IlV~NKiDl~ 99 (188)
..+..||.++ ++|++.. .....+.. ....+|.++|+||+|+.
T Consensus 90 ~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 90 AALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 3477899997 7887522 11121111 12348999999999975
No 261
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.40 E-value=0.0073 Score=52.83 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=46.6
Q ss_pred ccceeeEEE-EecCCc------hHHHHHHHhcCCCCcEEEEEecCCCCChHHHHHHh----cC--CCEEEEeccccccHH
Q psy7063 59 KLTLKNVLF-REDCNA------DELIDVINANRVYLPCIYAYNKIDQISIEEVDRIA----RQ--PNSVVVSCNMKLNLD 125 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~------dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~l~----~~--~~~vpISA~~~~gld 125 (188)
-+..+|+++ ++|+.. ..+...+ ..+|.++|+||+|+++......+. .. ...+.+|+.++.+..
T Consensus 31 ~~~~~d~vvevvDar~P~~s~~~~l~~~v----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~~~ 106 (322)
T COG1161 31 VLKSVDVVVEVVDARDPLGTRNPELERIV----KEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGK 106 (322)
T ss_pred hcccCCEEEEEEeccccccccCccHHHHH----ccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccCcc
Confidence 378899998 888742 2333333 357779999999999876554332 11 236889999998888
Q ss_pred HHHH
Q psy7063 126 YLLD 129 (188)
Q Consensus 126 ~L~~ 129 (188)
.+..
T Consensus 107 ~i~~ 110 (322)
T COG1161 107 KIRK 110 (322)
T ss_pred chHH
Confidence 7773
No 262
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.36 E-value=0.0099 Score=50.70 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=38.7
Q ss_pred cccceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCCCh--HH-HHHHh------cCCCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQISI--EE-VDRIA------RQPNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~~~--e~-l~~l~------~~~~~vpISA~~~ 121 (188)
.+++.+|+++ ++|++.. .+...+ ....+|+++++||+|+... +. ++.+. .++..+||||..+
T Consensus 83 ~~l~~aD~ailVVDa~~g~~~~t~~~~~~~--~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa~~~ 160 (270)
T cd01886 83 RSLRVLDGAVAVFDAVAGVEPQTETVWRQA--DRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGEEDD 160 (270)
T ss_pred HHHHHcCEEEEEEECCCCCCHHHHHHHHHH--HHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccccCCC
Confidence 3578899987 7887531 122222 2346899999999998742 22 22222 1345799998755
No 263
>KOG0075|consensus
Probab=96.36 E-value=0.014 Score=46.23 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=55.5
Q ss_pred HHhhhhhcccceeeEEE-EecCCchH--------HHHHHHhc-CCCCcEEEEEecCCCCCh---HH-HHHHh--c--CCC
Q psy7063 51 YEADTLPSKLTLKNVLF-REDCNADE--------LIDVINAN-RVYLPCIYAYNKIDQISI---EE-VDRIA--R--QPN 112 (188)
Q Consensus 51 ~~~~~~~~~i~~ADvvl-~~D~s~dd--------~~~~l~~~-~~~kP~IlV~NKiDl~~~---e~-l~~l~--~--~~~ 112 (188)
|++.|+.| -+.+++++ ++|+++++ +-+.+... -..+|+++..||+|+... .. ++++. . ..+
T Consensus 78 frsmWery-cR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdRE 156 (186)
T KOG0075|consen 78 FRSMWERY-CRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDRE 156 (186)
T ss_pred HHHHHHHH-hhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccce
Confidence 34444444 67888887 78876432 23333221 136899999999998743 22 34432 1 122
Q ss_pred --EEEEeccccccHHHHHHHHHHhcc
Q psy7063 113 --SVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 113 --~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
.+.||++...|+|.+.+.|.++..
T Consensus 157 vcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 157 VCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred EEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 466999999999999999888754
No 264
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.30 E-value=0.013 Score=45.09 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=48.4
Q ss_pred ccceeeEEE-EecCCchH--HH-HHHHhcCCCCcEEEEEecCCCCChHHHH---HHh-c--CCCEEEEeccccccHHHHH
Q psy7063 59 KLTLKNVLF-REDCNADE--LI-DVINANRVYLPCIYAYNKIDQISIEEVD---RIA-R--QPNSVVVSCNMKLNLDYLL 128 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd--~~-~~l~~~~~~kP~IlV~NKiDl~~~e~l~---~l~-~--~~~~vpISA~~~~gld~L~ 128 (188)
...+||+++ +-.++... +- .++ ....+|+|-|+.|+|++..+.++ ++. . -.+++.+||..+.|+++|.
T Consensus 61 t~~dadvi~~v~~and~~s~f~p~f~--~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~ 138 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPPGFL--DIGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELV 138 (148)
T ss_pred HhhccceeeeeecccCccccCCcccc--cccccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHH
Confidence 467899997 44333221 00 111 22457899999999999655443 222 1 2368889999999999999
Q ss_pred HHHHHh
Q psy7063 129 DIIWLY 134 (188)
Q Consensus 129 ~~I~~~ 134 (188)
+.+...
T Consensus 139 ~~L~~~ 144 (148)
T COG4917 139 DYLASL 144 (148)
T ss_pred HHHHhh
Confidence 877643
No 265
>KOG1191|consensus
Probab=96.10 E-value=0.0088 Score=55.06 Aligned_cols=86 Identities=20% Similarity=0.252 Sum_probs=57.9
Q ss_pred cccceeeEEE-EecC----CchH--HHHHHHhcC----C------CCcEEEEEecCCCCCh-HHHHH-----Hh-----c
Q psy7063 58 SKLTLKNVLF-REDC----NADE--LIDVINANR----V------YLPCIYAYNKIDQISI-EEVDR-----IA-----R 109 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~----s~dd--~~~~l~~~~----~------~kP~IlV~NKiDl~~~-e~l~~-----l~-----~ 109 (188)
-++..|||++ ++|+ +..| +.+.+.... . .+|.|+|.||+|+.++ .+... .. .
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~ 423 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSV 423 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcc
Confidence 4578999997 7886 2222 234443211 1 3899999999998754 22211 11 2
Q ss_pred CCCEEEEeccccccHHHHHHHHHHhcccceeeeC
Q psy7063 110 QPNSVVVSCNMKLNLDYLLDIIWLYLSLIRVYTK 143 (188)
Q Consensus 110 ~~~~vpISA~~~~gld~L~~~I~~~L~~irVY~k 143 (188)
++-.+.+|+.+++|++.|.+++.+.+...++-|.
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~ 457 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNIVERLVVSPH 457 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHHHHHhhcCCC
Confidence 2324459999999999999999999988777553
No 266
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.09 E-value=0.0089 Score=49.05 Aligned_cols=48 Identities=15% Similarity=0.109 Sum_probs=35.3
Q ss_pred cEEEEEecCCCCChH--HHHHH-------hcCCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 88 PCIYAYNKIDQISIE--EVDRI-------ARQPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 88 P~IlV~NKiDl~~~e--~l~~l-------~~~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
-=++|+||+|+++.- .++.+ .+..+++.+|+++|+|++++.+.+....
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 348999999998642 12222 2344699999999999999998887653
No 267
>COG2229 Predicted GTPase [General function prediction only]
Probab=95.93 E-value=0.063 Score=43.59 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=47.2
Q ss_pred ceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCCC---hHHHHHHh--c--CCCEEEEeccccccHHH
Q psy7063 61 TLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQIS---IEEVDRIA--R--QPNSVVVSCNMKLNLDY 126 (188)
Q Consensus 61 ~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~~---~e~l~~l~--~--~~~~vpISA~~~~gld~ 126 (188)
+.|+-.+ ++|.+.+ .+.+++.. +...|.++++||.|+.+ ++.+..+. . ..++|+++|..+++..+
T Consensus 90 ~ga~gaivlVDss~~~~~~a~~ii~f~~~-~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~ 168 (187)
T COG2229 90 RGAVGAIVLVDSSRPITFHAEEIIDFLTS-RNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATEGEGARD 168 (187)
T ss_pred CCcceEEEEEecCCCcchHHHHHHHHHhh-ccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeecccchhHHH
Confidence 4455554 6776522 23334332 22389999999999974 34454443 2 23689999999999988
Q ss_pred HHHHHHHh
Q psy7063 127 LLDIIWLY 134 (188)
Q Consensus 127 L~~~I~~~ 134 (188)
.++.+...
T Consensus 169 ~L~~ll~~ 176 (187)
T COG2229 169 QLDVLLLK 176 (187)
T ss_pred HHHHHHhh
Confidence 77776655
No 268
>KOG1424|consensus
Probab=95.92 E-value=0.02 Score=53.08 Aligned_cols=62 Identities=18% Similarity=0.114 Sum_probs=44.7
Q ss_pred ccceeeEEE-EecCC------chHHHHHHHhcCCCCcEEEEEecCCCCChHHHHHHh-----cCCCEEEEeccc
Q psy7063 59 KLTLKNVLF-REDCN------ADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIA-----RQPNSVVVSCNM 120 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s------~dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~l~-----~~~~~vpISA~~ 120 (188)
-+..+|||+ ++|+. .+|+.+.+.+.-.+|..++++||+|+++++....+. +.-.+++-||..
T Consensus 171 VlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 171 VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALA 244 (562)
T ss_pred HHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEeccc
Confidence 478899998 89975 456666665444468899999999999887654442 223577788865
No 269
>KOG1144|consensus
Probab=95.85 E-value=0.035 Score=53.71 Aligned_cols=102 Identities=17% Similarity=0.070 Sum_probs=61.7
Q ss_pred hcccceeEEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCC---chHHHHHHHhc-CCCCcEEEEEecCCC
Q psy7063 24 AYCWSKGTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCN---ADELIDVINAN-RVYLPCIYAYNKIDQ 98 (188)
Q Consensus 24 ~~~~~~~~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s---~dd~~~~l~~~-~~~kP~IlV~NKiDl 98 (188)
...+|.+-++..|+ + ++..++-..+-..||+.| ++|+. ...-++.+... ....|.|+++||+|.
T Consensus 536 ~~kvPg~lvIdtpg--h---------EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDR 604 (1064)
T KOG1144|consen 536 RLKVPGLLVIDTPG--H---------ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDR 604 (1064)
T ss_pred hcCCCeeEEecCCC--c---------hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhh
Confidence 34578777666665 1 122233345677899998 78875 22223333222 246899999999996
Q ss_pred C-C-----hHHH----------------HHH----------------h-------cCCCEEEEeccccccHHHHHHHHHH
Q psy7063 99 I-S-----IEEV----------------DRI----------------A-------RQPNSVVVSCNMKLNLDYLLDIIWL 133 (188)
Q Consensus 99 ~-~-----~e~l----------------~~l----------------~-------~~~~~vpISA~~~~gld~L~~~I~~ 133 (188)
. . ...+ .++ + .+...||.||.+|.|+.+|+-.|.+
T Consensus 605 LYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ 684 (1064)
T KOG1144|consen 605 LYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQ 684 (1064)
T ss_pred hcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHH
Confidence 4 1 0001 011 0 0113699999999999998877765
Q ss_pred hcc
Q psy7063 134 YLS 136 (188)
Q Consensus 134 ~L~ 136 (188)
+..
T Consensus 685 ltQ 687 (1064)
T KOG1144|consen 685 LTQ 687 (1064)
T ss_pred HHH
Confidence 543
No 270
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=95.58 E-value=0.048 Score=45.51 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=26.7
Q ss_pred ccceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCCC
Q psy7063 59 KLTLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQIS 100 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~~ 100 (188)
.++.+|..+ ++|++.. .+...+ ....+|+++++||+|+..
T Consensus 84 ~l~~aD~~IlVvd~~~g~~~~~~~~~~~~--~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 84 SLSVLDGAILVISAVEGVQAQTRILWRLL--RKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHhCeEEEEEeCCCCCCHHHHHHHHHH--HHcCCCEEEEEECccccC
Confidence 467788887 7787532 122222 234689999999999863
No 271
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.54 E-value=0.077 Score=43.79 Aligned_cols=65 Identities=11% Similarity=0.127 Sum_probs=37.6
Q ss_pred cceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEE-EEEecCCCCCh-HHH----HHH----h----cCCCEEEEeccc
Q psy7063 60 LTLKNVLF-REDCNA---DELIDVINA-NRVYLPCI-YAYNKIDQISI-EEV----DRI----A----RQPNSVVVSCNM 120 (188)
Q Consensus 60 i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~I-lV~NKiDl~~~-e~l----~~l----~----~~~~~vpISA~~ 120 (188)
+..||+++ +.|++. +.....+.. ....+|.+ +|+||+|+.+. +.+ ..+ . .+..++++||++
T Consensus 101 ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~ 180 (225)
T cd01882 101 AKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIV 180 (225)
T ss_pred HHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc
Confidence 57799997 788752 111222211 12357855 49999998632 211 111 1 235699999998
Q ss_pred cccH
Q psy7063 121 KLNL 124 (188)
Q Consensus 121 ~~gl 124 (188)
...+
T Consensus 181 ~~~~ 184 (225)
T cd01882 181 HGRY 184 (225)
T ss_pred CCCC
Confidence 7444
No 272
>KOG0076|consensus
Probab=95.49 E-value=0.019 Score=46.41 Aligned_cols=77 Identities=18% Similarity=0.099 Sum_probs=50.7
Q ss_pred cceeeEEE-EecCCchH-HHH-------HHHh-cCCCCcEEEEEecCCCCChH---HHHHHh--------cCCCEEEEec
Q psy7063 60 LTLKNVLF-REDCNADE-LID-------VINA-NRVYLPCIYAYNKIDQISIE---EVDRIA--------RQPNSVVVSC 118 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd-~~~-------~l~~-~~~~kP~IlV~NKiDl~~~e---~l~~l~--------~~~~~vpISA 118 (188)
...|..++ ++|++..+ +.+ .+.. .....|+++.+||-|+.+.- +++... +...+.||||
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchh
Confidence 35678888 89998633 221 1111 22469999999999987543 332221 1124799999
Q ss_pred cccccHHHHHHHHHHhcc
Q psy7063 119 NMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L~ 136 (188)
.+|.|+++=.+.+.+.+.
T Consensus 170 l~gegv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVKKLE 187 (197)
T ss_pred hhcccHHHHHHHHHHHHh
Confidence 999999887777766654
No 273
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=95.48 E-value=0.055 Score=44.87 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=27.4
Q ss_pred cccceeeEEE-EecCCch---HHHHHHHh-cCCCCcEEEEEecCCCC
Q psy7063 58 SKLTLKNVLF-REDCNAD---ELIDVINA-NRVYLPCIYAYNKIDQI 99 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d---d~~~~l~~-~~~~kP~IlV~NKiDl~ 99 (188)
.++..||..+ ++|++.. .....+.. ....+|.++|+||+|+.
T Consensus 92 ~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 92 AALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred HHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 4578899997 7887632 21222211 12358999999999975
No 274
>KOG1532|consensus
Probab=95.40 E-value=0.037 Score=48.03 Aligned_cols=52 Identities=23% Similarity=0.197 Sum_probs=38.0
Q ss_pred CCCcEEEEEecCCCCChHHH-------HHH--------------------------hcCCCEEEEeccccccHHHHHHHH
Q psy7063 85 VYLPCIYAYNKIDQISIEEV-------DRI--------------------------ARQPNSVVVSCNMKLNLDYLLDII 131 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~~e~l-------~~l--------------------------~~~~~~vpISA~~~~gld~L~~~I 131 (188)
...|.|+|+||+|+.+.+.. +.+ +..-.++.+||.+|.|++++..+|
T Consensus 180 tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av 259 (366)
T KOG1532|consen 180 TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAV 259 (366)
T ss_pred ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHH
Confidence 45899999999999864321 111 111247899999999999998888
Q ss_pred HHhcc
Q psy7063 132 WLYLS 136 (188)
Q Consensus 132 ~~~L~ 136 (188)
-+.++
T Consensus 260 ~~~vd 264 (366)
T KOG1532|consen 260 DESVD 264 (366)
T ss_pred HHHHH
Confidence 77665
No 275
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.33 E-value=0.045 Score=47.67 Aligned_cols=59 Identities=22% Similarity=0.135 Sum_probs=40.8
Q ss_pred CCCcEEEEEecCCCCChHHHH--H---Hh-cC-CCEEEEeccccccHHHHHHHHHHhcccceeeeCCCC
Q psy7063 85 VYLPCIYAYNKIDQISIEEVD--R---IA-RQ-PNSVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPG 146 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~~e~l~--~---l~-~~-~~~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g 146 (188)
..+..++++||+|+.+.++.. . .+ .. ..++.+||+++.|+++|.+.+... +.|+.-..|
T Consensus 109 ~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~---~svl~GqSG 174 (301)
T COG1162 109 GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAELLAGK---ITVLLGQSG 174 (301)
T ss_pred cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCC---eEEEECCCC
Confidence 456668889999999665433 1 12 22 247889999999999988877655 566664433
No 276
>KOG0458|consensus
Probab=95.14 E-value=0.08 Score=49.71 Aligned_cols=67 Identities=22% Similarity=0.184 Sum_probs=42.9
Q ss_pred cccceeeEEE-EecCCchHHHHHH------Hh----cC-C-CCcEEEEEecCCCCC--hHHHHHHh-----------cC-
Q psy7063 58 SKLTLKNVLF-REDCNADELIDVI------NA----NR-V-YLPCIYAYNKIDQIS--IEEVDRIA-----------RQ- 110 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~~~~l------~~----~~-~-~kP~IlV~NKiDl~~--~e~l~~l~-----------~~- 110 (188)
.++..||+-+ ++|++...++.-. .+ .+ . -...|+++||+|+++ .+.++++. .|
T Consensus 274 ~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~ 353 (603)
T KOG0458|consen 274 SGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFK 353 (603)
T ss_pred ccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcc
Confidence 5789999987 8898754333211 00 11 1 256788999999984 33333221 12
Q ss_pred -C--CEEEEeccccccH
Q psy7063 111 -P--NSVVVSCNMKLNL 124 (188)
Q Consensus 111 -~--~~vpISA~~~~gl 124 (188)
. .+||||+.+|.|+
T Consensus 354 es~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 354 ESSVKFIPISGLSGENL 370 (603)
T ss_pred cCCcceEecccccCCcc
Confidence 1 5899999999999
No 277
>PRK13351 elongation factor G; Reviewed
Probab=95.08 E-value=0.053 Score=51.87 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=22.6
Q ss_pred EEEEeccccccHHHHHHHHHHhcccce
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLIR 139 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~ir 139 (188)
+++.||.++.|++.|++.|..+++.-.
T Consensus 255 V~~gSA~~~~Gv~~LLd~I~~~lPsP~ 281 (687)
T PRK13351 255 VLFGSALKNIGIEPLLDAVVDYLPSPL 281 (687)
T ss_pred EEecccCcCccHHHHHHHHHHHCCChh
Confidence 344699999999999999999987643
No 278
>PRK12740 elongation factor G; Reviewed
Probab=95.07 E-value=0.047 Score=52.02 Aligned_cols=26 Identities=23% Similarity=0.130 Sum_probs=22.6
Q ss_pred EEEEeccccccHHHHHHHHHHhcccc
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLI 138 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~i 138 (188)
+++.||.+|.|++.|++.|..+++--
T Consensus 239 v~~gSA~~~~Gv~~LLd~i~~~lPsp 264 (668)
T PRK12740 239 VFCGSALKNKGVQRLLDAVVDYLPSP 264 (668)
T ss_pred EEeccccCCccHHHHHHHHHHHCCCh
Confidence 45579999999999999999998754
No 279
>KOG0395|consensus
Probab=95.04 E-value=0.22 Score=40.49 Aligned_cols=77 Identities=18% Similarity=0.107 Sum_probs=47.6
Q ss_pred cceeeEEE-EecCCch-------HHHHHHHh--cCCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNAD-------ELIDVINA--NRVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d-------d~~~~l~~--~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~~ 122 (188)
+.++|--+ +.+++.- .+.+++.. .....|+++|+||+|+... ++-..+. .. ...+.+||+...
T Consensus 72 ~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~ 151 (196)
T KOG0395|consen 72 IRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNY 151 (196)
T ss_pred hccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCc
Confidence 55666665 6666531 22333311 1235799999999999742 2222232 11 237889999999
Q ss_pred cHHHHHHHHHHhcc
Q psy7063 123 NLDYLLDIIWLYLS 136 (188)
Q Consensus 123 gld~L~~~I~~~L~ 136 (188)
+++++...+.....
T Consensus 152 ~v~~~F~~L~r~~~ 165 (196)
T KOG0395|consen 152 NVDEVFYELVREIR 165 (196)
T ss_pred CHHHHHHHHHHHHH
Confidence 99887777766554
No 280
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=94.94 E-value=0.039 Score=53.21 Aligned_cols=25 Identities=12% Similarity=0.292 Sum_probs=23.5
Q ss_pred CCCCCCcccCCCccccCCCeEEEee
Q psy7063 163 STKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 163 ~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
.||.+|+-|.++|+|++||+|+|+|
T Consensus 423 gAkVNg~~vpL~~~L~~Gd~VeIiT 447 (702)
T PRK11092 423 GARVDRQPYPLSQPLTSGQTVEIIT 447 (702)
T ss_pred EEEECCEECCCCccCCCCCEEEEEe
Confidence 6788999999999999999999986
No 281
>KOG0460|consensus
Probab=94.91 E-value=0.057 Score=48.13 Aligned_cols=99 Identities=20% Similarity=0.223 Sum_probs=56.2
Q ss_pred CCCCc-EEEEEecCCCCCh-HHHH-------HH-h--cCC----CEEEEec---cccccHHHHHHHHHHhcccceeeeCC
Q psy7063 84 RVYLP-CIYAYNKIDQISI-EEVD-------RI-A--RQP----NSVVVSC---NMKLNLDYLLDIIWLYLSLIRVYTKK 144 (188)
Q Consensus 84 ~~~kP-~IlV~NKiDl~~~-e~l~-------~l-~--~~~----~~vpISA---~~~~gld~L~~~I~~~L~~irVY~k~ 144 (188)
+...+ +++.+||+|+++. +.++ ++ . .|+ ++|.=|| ..|.+-+-=.++|.++|+.+--|--.
T Consensus 167 QVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~ 246 (449)
T KOG0460|consen 167 QVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT 246 (449)
T ss_pred HcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence 34444 5667999999954 3221 22 1 232 4666454 44533333345666666666666655
Q ss_pred CCCCCCCCCcEEeccC------CCCCCCCCcccCCCccccCCCeEEEe
Q psy7063 145 PGAPPDFDDGLILRKG------GTSTKYSPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 145 ~g~~~d~~~p~il~~g------g~~~k~~~qrvg~d~~L~d~Dvv~iv 186 (188)
|-+. +++||+||-. |+-...+| |+-. =+|+-||-++|+
T Consensus 247 P~R~--~~~pFl~pie~vfsI~GRGTVvtG-rlER-G~lKkG~e~eiv 290 (449)
T KOG0460|consen 247 PERD--LDKPFLLPIEDVFSIPGRGTVVTG-RLER-GVLKKGDEVEIV 290 (449)
T ss_pred cccc--cCCCceeehhheeeecCCceEEEE-EEee-cccccCCEEEEe
Confidence 6665 8999999986 33212233 2322 256777777776
No 282
>KOG0088|consensus
Probab=94.85 E-value=0.07 Score=42.79 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=45.4
Q ss_pred cceeeEEE-EecCCchHHHHHHH----hc----CCCCcEEEEEecCCCCChHHH-----HHHhc--CCCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADELIDVIN----AN----RVYLPCIYAYNKIDQISIEEV-----DRIAR--QPNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~~~l~----~~----~~~kP~IlV~NKiDl~~~e~l-----~~l~~--~~~~vpISA~~~~g 123 (188)
.+.++-.| +.|+|+.|-.+.+. .. -..+-.++|.||+|+.....+ +...+ -...+..||+.+.|
T Consensus 83 YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~G 162 (218)
T KOG0088|consen 83 YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVG 162 (218)
T ss_pred EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccC
Confidence 34455554 78888665332221 11 135778999999998543222 11111 12357799999999
Q ss_pred HHHHHHHHHHh
Q psy7063 124 LDYLLDIIWLY 134 (188)
Q Consensus 124 ld~L~~~I~~~ 134 (188)
+.+|.+.+...
T Consensus 163 i~elFe~Lt~~ 173 (218)
T KOG0088|consen 163 ISELFESLTAK 173 (218)
T ss_pred HHHHHHHHHHH
Confidence 99987766643
No 283
>KOG0083|consensus
Probab=94.83 E-value=0.051 Score=42.45 Aligned_cols=102 Identities=13% Similarity=0.030 Sum_probs=57.6
Q ss_pred hHHHHHHhhhhhcccceeeEEE-EecCC----chHHHHHHHh----cCCCCcEEEEEecCCCCChH-----HHHHHhc-C
Q psy7063 46 KSARAYEADTLPSKLTLKNVLF-REDCN----ADELIDVINA----NRVYLPCIYAYNKIDQISIE-----EVDRIAR-Q 110 (188)
Q Consensus 46 ~~~~a~~~~~~~~~i~~ADvvl-~~D~s----~dd~~~~l~~----~~~~kP~IlV~NKiDl~~~e-----~l~~l~~-~ 110 (188)
++=+|...-....-.++||.++ +.|++ -|....-+.. .+......++.||+|++.+. +=+++.+ +
T Consensus 54 tagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y 133 (192)
T KOG0083|consen 54 TAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAY 133 (192)
T ss_pred ccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHH
Confidence 3333333333333478999997 78865 3333222211 12246678999999986421 1123321 1
Q ss_pred -CCEEEEeccccccHHHHHHHHHHhcccceeeeCCCCCC
Q psy7063 111 -PNSVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAP 148 (188)
Q Consensus 111 -~~~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~ 148 (188)
-+....||++|.|++.-.-.|.+.|. -+-|.-+|+..
T Consensus 134 ~ipfmetsaktg~nvd~af~~ia~~l~-k~~~~~~~~~~ 171 (192)
T KOG0083|consen 134 GIPFMETSAKTGFNVDLAFLAIAEELK-KLKMGAPPEGE 171 (192)
T ss_pred CCCceeccccccccHhHHHHHHHHHHH-HhccCCCCCCc
Confidence 23677999999999886666666553 23344444443
No 284
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.81 E-value=0.062 Score=35.62 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=17.9
Q ss_pred eeeEEE-EecCCch---HHHHHH------HhcCCCCcEEEEEecCC
Q psy7063 62 LKNVLF-REDCNAD---ELIDVI------NANRVYLPCIYAYNKID 97 (188)
Q Consensus 62 ~ADvvl-~~D~s~d---d~~~~l------~~~~~~kP~IlV~NKiD 97 (188)
=+++++ +.|.|.. .+.+|+ ...-.++|.++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 355666 7888732 233332 22224799999999998
No 285
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=94.80 E-value=0.14 Score=40.89 Aligned_cols=108 Identities=8% Similarity=0.053 Sum_probs=59.9
Q ss_pred eeEEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCC---chH--HHHHHHh---cCCCCcEEEEEecCCCC
Q psy7063 29 KGTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCN---ADE--LIDVINA---NRVYLPCIYAYNKIDQI 99 (188)
Q Consensus 29 ~~~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s---~dd--~~~~l~~---~~~~kP~IlV~NKiDl~ 99 (188)
++.++..|+-.+.......+...+..........+|++| +.+++ .+| ..+.+.. ....+++++|+|+.|..
T Consensus 50 ~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l 129 (196)
T cd01852 50 RVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDL 129 (196)
T ss_pred EEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECcccc
Confidence 467888776322221222333334444444567888887 66654 222 2222221 11247899999999976
Q ss_pred ChH-----------HHHHHh-cCC-CEEEE-----eccccccHHHHHHHHHHhcc
Q psy7063 100 SIE-----------EVDRIA-RQP-NSVVV-----SCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 100 ~~e-----------~l~~l~-~~~-~~vpI-----SA~~~~gld~L~~~I~~~L~ 136 (188)
... .+..+. ... ..+.+ |+..+.++++|++.|.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~ 184 (196)
T cd01852 130 EGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVK 184 (196)
T ss_pred CCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHH
Confidence 422 122121 111 12233 46678899999999999886
No 286
>KOG0073|consensus
Probab=94.60 E-value=0.22 Score=40.01 Aligned_cols=67 Identities=19% Similarity=0.139 Sum_probs=41.4
Q ss_pred cceeeEEE-EecCCch----HH----HHHHH-hcCCCCcEEEEEecCCCCC---hHHHH------HHhcC--CCEEEEec
Q psy7063 60 LTLKNVLF-REDCNAD----EL----IDVIN-ANRVYLPCIYAYNKIDQIS---IEEVD------RIARQ--PNSVVVSC 118 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d----d~----~~~l~-~~~~~kP~IlV~NKiDl~~---~e~l~------~l~~~--~~~vpISA 118 (188)
..++|-++ ++|.++. +. .+.+. ......|+++++||.|+.. .+++. .+.+. -..+-+||
T Consensus 81 festdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~ 160 (185)
T KOG0073|consen 81 FESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSA 160 (185)
T ss_pred hhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEec
Confidence 56778887 8887642 11 12222 2335689999999999873 23332 22111 14688999
Q ss_pred cccccHHH
Q psy7063 119 NMKLNLDY 126 (188)
Q Consensus 119 ~~~~gld~ 126 (188)
.+|+++.+
T Consensus 161 ~tge~l~~ 168 (185)
T KOG0073|consen 161 VTGEDLLE 168 (185)
T ss_pred cccccHHH
Confidence 99977654
No 287
>KOG2423|consensus
Probab=94.51 E-value=0.14 Score=46.59 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=49.6
Q ss_pred ccceeeEEE-EecCCc------hHHHHHHHhcCCCCcEEEEEecCCCCChHH----HHHHhc-CCC-EEEEeccccccHH
Q psy7063 59 KLTLKNVLF-REDCNA------DELIDVINANRVYLPCIYAYNKIDQISIEE----VDRIAR-QPN-SVVVSCNMKLNLD 125 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~------dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~----l~~l~~-~~~-~vpISA~~~~gld 125 (188)
-|.++||++ +.|+.+ .-++..+.....+|.+|+|+||+|+++.-- +..|.. ++. .+-.|-.+..|-.
T Consensus 210 ViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfGKg 289 (572)
T KOG2423|consen 210 VIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFGKG 289 (572)
T ss_pred hhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccchh
Confidence 367889999 888753 245666766667899999999999986421 222322 331 2335555667777
Q ss_pred HHHHHHHHh
Q psy7063 126 YLLDIIWLY 134 (188)
Q Consensus 126 ~L~~~I~~~ 134 (188)
.|...+...
T Consensus 290 alI~llRQf 298 (572)
T KOG2423|consen 290 ALIQLLRQF 298 (572)
T ss_pred HHHHHHHHH
Confidence 777766554
No 288
>KOG0070|consensus
Probab=94.45 E-value=0.17 Score=40.95 Aligned_cols=77 Identities=16% Similarity=-0.000 Sum_probs=50.4
Q ss_pred cceeeEEE-EecCCchHH--------HHHHHh-cCCCCcEEEEEecCCCCCh---HHHHHHh---cC---C-CEEEEecc
Q psy7063 60 LTLKNVLF-REDCNADEL--------IDVINA-NRVYLPCIYAYNKIDQISI---EEVDRIA---RQ---P-NSVVVSCN 119 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~--------~~~l~~-~~~~kP~IlV~NKiDl~~~---e~l~~l~---~~---~-~~vpISA~ 119 (188)
..+.+.+| ++|.++-+- ...+.. .....|+++.+||.|+... .++.... .. . ++-+++|.
T Consensus 82 ~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~ 161 (181)
T KOG0070|consen 82 FQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAI 161 (181)
T ss_pred ccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccc
Confidence 67788787 899874321 122211 1246899999999998743 3332221 11 1 46679999
Q ss_pred ccccHHHHHHHHHHhcc
Q psy7063 120 MKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~ 136 (188)
+|.|+.+-++.+.+.+.
T Consensus 162 ~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 162 SGEGLYEGLDWLSNNLK 178 (181)
T ss_pred ccccHHHHHHHHHHHHh
Confidence 99999998888887664
No 289
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=94.39 E-value=0.09 Score=49.09 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=22.8
Q ss_pred EEEEeccccccHHHHHHHHHHhcccc
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLI 138 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~i 138 (188)
+++-||.++.|++.|++.|.++++--
T Consensus 251 V~~GSA~~n~Gv~~LLd~i~~~~P~P 276 (526)
T PRK00741 251 VFFGSALNNFGVQEFLDAFVEWAPAP 276 (526)
T ss_pred EEEeecccCcCHHHHHHHHHHHCCCC
Confidence 66689999999999999999999743
No 290
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.34 E-value=0.045 Score=46.79 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=32.9
Q ss_pred CcEEEEEecCCCCChHH----HHHHh---c------CCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 87 LPCIYAYNKIDQISIEE----VDRIA---R------QPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 87 kP~IlV~NKiDl~~~e~----l~~l~---~------~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
..=|+|+||+|....+. +.... . .++++.+||.++.|+++|.++|.++..
T Consensus 168 iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 168 IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 56699999999654332 21111 1 146888999999999999999988754
No 291
>PRK12739 elongation factor G; Reviewed
Probab=94.31 E-value=0.068 Score=51.31 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=39.0
Q ss_pred cccceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCCChH--H-HHHHh---cC---CCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQISIE--E-VDRIA---RQ---PNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~~~e--~-l~~l~---~~---~~~vpISA~~~ 121 (188)
.++..+|+++ ++|++.. .+...+ ....+|+|+++||+|+...+ . ++.+. .+ ...+|+||..+
T Consensus 92 ~al~~~D~~ilVvDa~~g~~~qt~~i~~~~--~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~iPis~~~~ 169 (691)
T PRK12739 92 RSLRVLDGAVAVFDAVSGVEPQSETVWRQA--DKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLPIGAEDD 169 (691)
T ss_pred HHHHHhCeEEEEEeCCCCCCHHHHHHHHHH--HHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEeccccccc
Confidence 4578899997 8887521 222222 23468999999999998432 1 23232 22 34688888655
Q ss_pred c
Q psy7063 122 L 122 (188)
Q Consensus 122 ~ 122 (188)
.
T Consensus 170 f 170 (691)
T PRK12739 170 F 170 (691)
T ss_pred c
Confidence 3
No 292
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=94.25 E-value=0.068 Score=51.27 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=39.1
Q ss_pred cccceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCCChH--H-HHHHh---cC---CCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQISIE--E-VDRIA---RQ---PNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~~~e--~-l~~l~---~~---~~~vpISA~~~ 121 (188)
.++..+|+++ ++|++.. .+...+ ....+|+++++||+|+.... . ++.+. .+ +..+|+||..+
T Consensus 94 ~~l~~~D~~ilVvda~~g~~~~~~~~~~~~--~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 94 RSLRVLDGAVAVLDAVGGVQPQSETVWRQA--NRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HHHHHhCEEEEEEeCCCCCChhHHHHHHHH--HHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEeccccCCC
Confidence 3477889997 7887631 222222 23468999999999987432 2 23232 22 23788998776
Q ss_pred c
Q psy7063 122 L 122 (188)
Q Consensus 122 ~ 122 (188)
.
T Consensus 172 ~ 172 (689)
T TIGR00484 172 F 172 (689)
T ss_pred c
Confidence 4
No 293
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.24 E-value=0.15 Score=44.58 Aligned_cols=51 Identities=27% Similarity=0.224 Sum_probs=36.8
Q ss_pred CCcEEEEEecCCCCChHH----H----HHHh---c----CCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 86 YLPCIYAYNKIDQISIEE----V----DRIA---R----QPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 86 ~kP~IlV~NKiDl~~~e~----l----~~l~---~----~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
..-=|+|+||.|....+. + .... . .++++-+||.+|.|+++|.++|.+++.
T Consensus 189 EiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 189 EIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred hhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 345599999999754321 1 1111 0 246888999999999999999999876
No 294
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=94.13 E-value=0.29 Score=41.20 Aligned_cols=75 Identities=8% Similarity=-0.007 Sum_probs=41.6
Q ss_pred cceeEEEccCCccchh--chhhHHHHHHhhhhhcccc-eeeEEE-EecCC----chHHHHHHHh-cCCCCcEEEEEecCC
Q psy7063 27 WSKGTFQSYTSSINRH--YYYKSARAYEADTLPSKLT-LKNVLF-REDCN----ADELIDVINA-NRVYLPCIYAYNKID 97 (188)
Q Consensus 27 ~~~~~~~~~~~~ln~~--l~~~~~~a~~~~~~~~~i~-~ADvvl-~~D~s----~dd~~~~l~~-~~~~kP~IlV~NKiD 97 (188)
.|..+|+..|+-.... -......+.+..+....+. .++++| ++|++ ..+..+.... ....+|+++|+||+|
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D 203 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLD 203 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCC
Confidence 3455677655532110 1113344555555555566 456777 77654 3332233322 235689999999999
Q ss_pred CCCh
Q psy7063 98 QISI 101 (188)
Q Consensus 98 l~~~ 101 (188)
..+.
T Consensus 204 ~~~~ 207 (240)
T smart00053 204 LMDE 207 (240)
T ss_pred CCCc
Confidence 8754
No 295
>KOG0098|consensus
Probab=93.87 E-value=0.22 Score=40.88 Aligned_cols=44 Identities=20% Similarity=0.097 Sum_probs=29.6
Q ss_pred CCCcEEEEEecCCCCCh-----HHHHHHhc-CC-CEEEEeccccccHHHHH
Q psy7063 85 VYLPCIYAYNKIDQISI-----EEVDRIAR-QP-NSVVVSCNMKLNLDYLL 128 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~~-----e~l~~l~~-~~-~~vpISA~~~~gld~L~ 128 (188)
.+.-++++.||+|+... |+-+.+.+ .. -...+||+++.|+++..
T Consensus 110 ~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 110 ENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred CCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence 45678899999998643 33344432 11 13459999999998844
No 296
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=93.86 E-value=0.092 Score=50.51 Aligned_cols=57 Identities=26% Similarity=0.289 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcccceeeeC-CCCCCCCCCCcEEeccC--------------CC---CCCCCCcccCCCccccCCCeEEEe
Q psy7063 125 DYLLDIIWLYLSLIRVYTK-KPGAPPDFDDGLILRKG--------------GT---STKYSPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 125 d~L~~~I~~~L~~irVY~k-~~g~~~d~~~p~il~~g--------------g~---~~k~~~qrvg~d~~L~d~Dvv~iv 186 (188)
.++.+.+...|-..+||-- |+|. -+-||.| |- .||..|+.|..+|.|+.||+|+|+
T Consensus 374 ~ef~e~~k~dlf~d~VyvfTPkG~------vi~LP~GatplDFAY~vHt~iG~~c~gAkVnG~ivpl~~~Lk~Gd~VEIi 447 (701)
T COG0317 374 GEFLEQLKSDLFPDRVYVFTPKGK------VIDLPKGATPLDFAYAVHTDIGHRCIGAKVNGRIVPLTTKLQTGDQVEII 447 (701)
T ss_pred HHHHHHHhhcccCceEEEECCCCC------EEeCCCCCcchhhhhhhhchhcceeeEEEECCEEeccceecCCCCEEEEE
Confidence 4466666666666777774 5564 4567777 33 678899999999999999999998
Q ss_pred e
Q psy7063 187 K 187 (188)
Q Consensus 187 ~ 187 (188)
+
T Consensus 448 t 448 (701)
T COG0317 448 T 448 (701)
T ss_pred e
Confidence 6
No 297
>KOG0466|consensus
Probab=93.66 E-value=0.12 Score=45.70 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=39.6
Q ss_pred CCcEEEEEecCCCCChHH-H---HHHh--------cCCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 86 YLPCIYAYNKIDQISIEE-V---DRIA--------RQPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 86 ~kP~IlV~NKiDl~~~e~-l---~~l~--------~~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
-+.++++-||+|+..++. + +.+. +..+++|+||.-+.|++.+.+.|.+..+
T Consensus 179 LkhiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 179 LKHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 377899999999986542 2 2221 1236999999999999999999999876
No 298
>KOG0095|consensus
Probab=93.63 E-value=0.17 Score=40.32 Aligned_cols=91 Identities=19% Similarity=0.068 Sum_probs=52.2
Q ss_pred HHHHhhhhhcccceeeEEE-EecCC-------chHHHHHHHhcC-CCCcEEEEEecCCCCChHHH-----HHHhc--CCC
Q psy7063 49 RAYEADTLPSKLTLKNVLF-REDCN-------ADELIDVINANR-VYLPCIYAYNKIDQISIEEV-----DRIAR--QPN 112 (188)
Q Consensus 49 ~a~~~~~~~~~i~~ADvvl-~~D~s-------~dd~~~~l~~~~-~~kP~IlV~NKiDl~~~e~l-----~~l~~--~~~ 112 (188)
+|...-...+-.++|..++ +.|++ .++....++.-. ...-.|+|.||+|+.+..++ +++.. +.-
T Consensus 66 qerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmy 145 (213)
T KOG0095|consen 66 QERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMY 145 (213)
T ss_pred hHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhh
Confidence 3433333444467888886 78876 123222232211 12446899999999865333 12211 112
Q ss_pred EEEEeccccccHHHHHHHHHH-hcccce
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWL-YLSLIR 139 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~-~L~~ir 139 (188)
.+..||+...|++.|...+.- +.+..|
T Consensus 146 fletsakea~nve~lf~~~a~rli~~ar 173 (213)
T KOG0095|consen 146 FLETSAKEADNVEKLFLDLACRLISEAR 173 (213)
T ss_pred hhhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 466999999999998776653 333333
No 299
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.54 E-value=0.11 Score=37.41 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=24.9
Q ss_pred cceeeEEE-EecCCchH-HHH---H---HHh---cCCCCcEEEEEecCC
Q psy7063 60 LTLKNVLF-REDCNADE-LID---V---INA---NRVYLPCIYAYNKID 97 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd-~~~---~---l~~---~~~~kP~IlV~NKiD 97 (188)
+..+|+++ +.|.+..+ +.. . +.. .....|+++|+||.|
T Consensus 71 ~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 71 LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 67899997 88988543 211 1 111 124699999999998
No 300
>PRK07560 elongation factor EF-2; Reviewed
Probab=93.31 E-value=0.29 Score=47.32 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=26.1
Q ss_pred cccceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCC
Q psy7063 58 SKLTLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQI 99 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~ 99 (188)
.++..+|..+ ++|+... .+..++ .....|.|+++||+|+.
T Consensus 106 ~~l~~~D~avlVvda~~g~~~~t~~~~~~~--~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 106 RAMRAVDGAIVVVDAVEGVMPQTETVLRQA--LRERVKPVLFINKVDRL 152 (731)
T ss_pred HHHHhcCEEEEEEECCCCCCccHHHHHHHH--HHcCCCeEEEEECchhh
Confidence 3578889886 7876521 223332 22357889999999975
No 301
>PRK00007 elongation factor G; Reviewed
Probab=93.16 E-value=0.14 Score=49.29 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=38.6
Q ss_pred cccceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCCChH--H-HHHHh---cC---CCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQISIE--E-VDRIA---RQ---PNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~~~e--~-l~~l~---~~---~~~vpISA~~~ 121 (188)
.++..+|+++ ++|++.. .+..++ ....+|+|+++||+|+.... . ++.+. .+ ...+|+||..+
T Consensus 94 ~al~~~D~~vlVvda~~g~~~qt~~~~~~~--~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 94 RSLRVLDGAVAVFDAVGGVEPQSETVWRQA--DKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHHHcCEEEEEEECCCCcchhhHHHHHHH--HHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEecCccCCc
Confidence 4578889987 7887521 223333 23468999999999987432 1 23232 22 34678888776
No 302
>KOG1490|consensus
Probab=93.08 E-value=0.26 Score=45.91 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=50.1
Q ss_pred EEccCCccchhchhhHHHHHHhhhhhcccceeeEEEEecCCch---HHHHHH---Hh---cCCCCcEEEEEecCCCCChH
Q psy7063 32 FQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLFREDCNAD---ELIDVI---NA---NRVYLPCIYAYNKIDQISIE 102 (188)
Q Consensus 32 ~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl~~D~s~d---d~~~~l---~~---~~~~kP~IlV~NKiDl~~~e 102 (188)
..+.|+.|++.+.....-|-.+..+-.-++.| |+.+.|+|.. .+.+|+ .. .-.++|+|+|+||+|+...+
T Consensus 219 ViDTPGILD~plEdrN~IEmqsITALAHLraa-VLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 219 VIDTPGILDRPEEDRNIIEMQIITALAHLRSA-VLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE 297 (620)
T ss_pred ecCCccccCcchhhhhHHHHHHHHHHHHhhhh-heeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcc
Confidence 34445567776554444333222222223333 3336666521 122322 21 22589999999999987544
Q ss_pred HH--------HHHhcC--CCEEEEeccccccHHH
Q psy7063 103 EV--------DRIARQ--PNSVVVSCNMKLNLDY 126 (188)
Q Consensus 103 ~l--------~~l~~~--~~~vpISA~~~~gld~ 126 (188)
.+ +.+... ..++..|..++.|+-+
T Consensus 298 dL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~ 331 (620)
T KOG1490|consen 298 DLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMD 331 (620)
T ss_pred ccCHHHHHHHHHHHhccCceEEEecccchhceee
Confidence 33 112222 2367899999999844
No 303
>KOG0079|consensus
Probab=92.96 E-value=0.54 Score=37.42 Aligned_cols=89 Identities=15% Similarity=0.065 Sum_probs=53.0
Q ss_pred hHHHHHHhhhhhcccceeeEEE-EecCCchH-HH------HHHHhcCCCCcEEEEEecCCCCCh-----HHHHHHh-c-C
Q psy7063 46 KSARAYEADTLPSKLTLKNVLF-REDCNADE-LI------DVINANRVYLPCIYAYNKIDQISI-----EEVDRIA-R-Q 110 (188)
Q Consensus 46 ~~~~a~~~~~~~~~i~~ADvvl-~~D~s~dd-~~------~~l~~~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~ 110 (188)
+|=+|...+...---+.-..++ +.|+|.++ +. +.++.+-...|-++|.||.|.+.. ++...+. . .
T Consensus 64 tAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg 143 (198)
T KOG0079|consen 64 TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMG 143 (198)
T ss_pred cccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcC
Confidence 3333333333333345566666 88998543 21 223333357899999999998743 2222222 1 2
Q ss_pred CCEEEEeccccccHHHHHHHHHHh
Q psy7063 111 PNSVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 111 ~~~vpISA~~~~gld~L~~~I~~~ 134 (188)
-+.+..||+...|++..-.-|.+.
T Consensus 144 ie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 144 IELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred chheehhhhhcccchHHHHHHHHH
Confidence 357889999999998866555543
No 304
>KOG0072|consensus
Probab=92.88 E-value=0.31 Score=38.56 Aligned_cols=77 Identities=16% Similarity=0.078 Sum_probs=48.1
Q ss_pred cceeeEEE-EecCCchHHH--------HHHHh-cCCCCcEEEEEecCCCCCh---HH-H-----HHHhc-CCCEEEEecc
Q psy7063 60 LTLKNVLF-REDCNADELI--------DVINA-NRVYLPCIYAYNKIDQISI---EE-V-----DRIAR-QPNSVVVSCN 119 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~--------~~l~~-~~~~kP~IlV~NKiDl~~~---e~-l-----~~l~~-~~~~vpISA~ 119 (188)
..+.|.+| ++|.++-|-+ ..+.+ .......++++||.|.... .+ . ..+.. .-.+|..||.
T Consensus 83 y~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~ 162 (182)
T KOG0072|consen 83 YADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAV 162 (182)
T ss_pred hcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccc
Confidence 45667777 8887643321 12211 1234667889999998643 22 2 22221 1247889999
Q ss_pred ccccHHHHHHHHHHhcc
Q psy7063 120 MKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~ 136 (188)
+|.|++...+.+.+-|.
T Consensus 163 kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 163 KGEGLDPAMDWLQRPLK 179 (182)
T ss_pred cccCCcHHHHHHHHHHh
Confidence 99999999888877653
No 305
>KOG0086|consensus
Probab=92.87 E-value=0.53 Score=37.64 Aligned_cols=76 Identities=16% Similarity=0.076 Sum_probs=44.1
Q ss_pred HHhhhhhcccceeeEEEEecCCchHHHHHH----Hhc----CCCCcEEEEEecCCCCChHHHH--HHhcC---CC--EEE
Q psy7063 51 YEADTLPSKLTLKNVLFREDCNADELIDVI----NAN----RVYLPCIYAYNKIDQISIEEVD--RIARQ---PN--SVV 115 (188)
Q Consensus 51 ~~~~~~~~~i~~ADvvl~~D~s~dd~~~~l----~~~----~~~kP~IlV~NKiDl~~~e~l~--~l~~~---~~--~vp 115 (188)
|++....|-=..|-.+|+.|+|.-|-.+.+ ... ..++-+|++.||-|+-+..++. +...| .+ ...
T Consensus 71 FRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flE 150 (214)
T KOG0086|consen 71 FRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLE 150 (214)
T ss_pred HHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeee
Confidence 344444443344556678898854433322 111 2356678899999997554332 11122 22 456
Q ss_pred EeccccccHHH
Q psy7063 116 VSCNMKLNLDY 126 (188)
Q Consensus 116 ISA~~~~gld~ 126 (188)
.||.+|.|+++
T Consensus 151 TSa~TGeNVEE 161 (214)
T KOG0086|consen 151 TSALTGENVEE 161 (214)
T ss_pred ecccccccHHH
Confidence 99999999987
No 306
>KOG0087|consensus
Probab=92.77 E-value=0.46 Score=39.49 Aligned_cols=58 Identities=17% Similarity=0.037 Sum_probs=37.4
Q ss_pred CCCcEEEEEecCCCCC----h-HHHHHHhc--CCCEEEEeccccccHHH----HHHHHHHhcccceeee
Q psy7063 85 VYLPCIYAYNKIDQIS----I-EEVDRIAR--QPNSVVVSCNMKLNLDY----LLDIIWLYLSLIRVYT 142 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~----~-e~l~~l~~--~~~~vpISA~~~~gld~----L~~~I~~~L~~irVY~ 142 (188)
..+++++|.||+|+.. + ++-..+.+ .-..+.+||..+.|++. ++..|++.+..-++..
T Consensus 118 ~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k~~~~ 186 (222)
T KOG0087|consen 118 SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVSKKQLDE 186 (222)
T ss_pred CCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4689999999999864 1 22222221 12367899999999866 5566665555444433
No 307
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=92.44 E-value=0.056 Score=38.48 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=12.8
Q ss_pred cccCCCccccCCCeEEEe
Q psy7063 169 QRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 169 qrvg~d~~L~d~Dvv~iv 186 (188)
++.|+||+++|||||.+-
T Consensus 65 r~eGK~YivqDGDIi~f~ 82 (84)
T PF06071_consen 65 RLEGKDYIVQDGDIIHFR 82 (84)
T ss_dssp EEEETT-B--TTEEEEEE
T ss_pred cccCCceeEeCCCEEEEE
Confidence 369999999999999873
No 308
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=91.83 E-value=0.79 Score=42.58 Aligned_cols=52 Identities=25% Similarity=0.193 Sum_probs=34.3
Q ss_pred CCCcEEEEEecCCCCCh--HH-HH---HHh----------cCCCEEEEecccccc----------HHHHHHHHHHhccc
Q psy7063 85 VYLPCIYAYNKIDQISI--EE-VD---RIA----------RQPNSVVVSCNMKLN----------LDYLLDIIWLYLSL 137 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~~--e~-l~---~l~----------~~~~~vpISA~~~~g----------ld~L~~~I~~~L~~ 137 (188)
...+.|+|+||+|.+.. ++ ++ .|. .| +++..||..|+. +..|.+.|.++.+-
T Consensus 119 ~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 119 LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 34566999999999743 32 21 111 23 488899988764 35588888888763
No 309
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=91.60 E-value=0.53 Score=38.09 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=34.1
Q ss_pred eeEEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCch-----HHHHHHH----h---cCCCCcEEEEEec
Q psy7063 29 KGTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNAD-----ELIDVIN----A---NRVYLPCIYAYNK 95 (188)
Q Consensus 29 ~~~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~d-----d~~~~l~----~---~~~~kP~IlV~NK 95 (188)
.+.++++|+ +.+|-+.++..+. .+.+|--++ ++|.+.. +..+++. . .....|+++++||
T Consensus 50 ~~~lvD~PG--H~rlr~~~~~~~~------~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK 121 (181)
T PF09439_consen 50 KLRLVDIPG--HPRLRSKLLDELK------YLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNK 121 (181)
T ss_dssp CECEEEETT---HCCCHHHHHHHH------HHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-
T ss_pred EEEEEECCC--cHHHHHHHHHhhh------chhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeC
Confidence 467888887 3444444443211 144566666 8998632 2222221 1 2346899999999
Q ss_pred CCCCC
Q psy7063 96 IDQIS 100 (188)
Q Consensus 96 iDl~~ 100 (188)
.|+..
T Consensus 122 ~Dl~~ 126 (181)
T PF09439_consen 122 QDLFT 126 (181)
T ss_dssp TTSTT
T ss_pred ccccc
Confidence 99874
No 310
>PRK01777 hypothetical protein; Validated
Probab=91.57 E-value=0.13 Score=37.32 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=18.4
Q ss_pred CCcccCCCccccCCCeEEEe
Q psy7063 167 SPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 167 ~~qrvg~d~~L~d~Dvv~iv 186 (188)
.|+.+..||+|+|||.|+|.
T Consensus 55 ~Gk~v~~d~~L~dGDRVeIy 74 (95)
T PRK01777 55 YSRPAKLTDVLRDGDRVEIY 74 (95)
T ss_pred eCeECCCCCcCCCCCEEEEe
Confidence 67889999999999999996
No 311
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=91.52 E-value=0.26 Score=46.01 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=26.8
Q ss_pred ccceeeEEE-EecCCch---HHHHHHHh-cCCCCcEEEEEecCCCC
Q psy7063 59 KLTLKNVLF-REDCNAD---ELIDVINA-NRVYLPCIYAYNKIDQI 99 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d---d~~~~l~~-~~~~kP~IlV~NKiDl~ 99 (188)
.+..||.++ ++|++.. .....+.. ....+|+++++||+|+.
T Consensus 100 ~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 100 TLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD 145 (527)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 467899997 7887631 11121111 22468999999999986
No 312
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.24 E-value=0.86 Score=32.86 Aligned_cols=36 Identities=14% Similarity=0.285 Sum_probs=24.0
Q ss_pred cceeeEEE-EecCCc---hHHHHHHHhcCCCCcEEEEEec
Q psy7063 60 LTLKNVLF-REDCNA---DELIDVINANRVYLPCIYAYNK 95 (188)
Q Consensus 60 i~~ADvvl-~~D~s~---dd~~~~l~~~~~~kP~IlV~NK 95 (188)
+..+|+++ ++|++. ++..+.+...+..+|+++|+||
T Consensus 77 ~~~~d~ii~vv~~~~~~~~~~~~~~~~l~~~~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNPITEDDKNILRELKNKKPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSHSHHHHHHHHHHHHTTSEEEEEEES
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHHHhcCCCEEEEEcC
Confidence 48889998 788653 2223333222366999999998
No 313
>KOG0394|consensus
Probab=90.88 E-value=1.4 Score=36.13 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=61.7
Q ss_pred hhHHHHHHhhhhhcccceeeEEE-EecCCchH-------H-HHHHHh-c---CCCCcEEEEEecCCCCCh-H------HH
Q psy7063 45 YKSARAYEADTLPSKLTLKNVLF-REDCNADE-------L-IDVINA-N---RVYLPCIYAYNKIDQISI-E------EV 104 (188)
Q Consensus 45 ~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~dd-------~-~~~l~~-~---~~~kP~IlV~NKiDl~~~-e------~l 104 (188)
+++=+|....+-..-.+.||.-+ +.|++... . .+++.. . ...-|.|++.||+|+... + ..
T Consensus 64 DTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~A 143 (210)
T KOG0394|consen 64 DTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKA 143 (210)
T ss_pred ecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHH
Confidence 34444444444444567888876 56765321 1 123321 1 134799999999998642 1 11
Q ss_pred HHH-h--cCCCEEEEeccccccHHHHHHHHH-HhcccceeeeCCCCCCCCCCCcEEecc
Q psy7063 105 DRI-A--RQPNSVVVSCNMKLNLDYLLDIIW-LYLSLIRVYTKKPGAPPDFDDGLILRK 159 (188)
Q Consensus 105 ~~l-~--~~~~~vpISA~~~~gld~L~~~I~-~~L~~irVY~k~~g~~~d~~~p~il~~ 159 (188)
..+ . ...+.+.+||+...|+++.-+.+. ..|..-.. .....+++++++.+..
T Consensus 144 q~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~---~~~~~~~~~d~i~~~~ 199 (210)
T KOG0394|consen 144 QTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANEDR---EIAELADYSDQIVLST 199 (210)
T ss_pred HHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccch---hhhhhhhcCccccccc
Confidence 112 1 123478899999999987555544 45654443 1122344556655543
No 314
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=90.70 E-value=0.49 Score=38.51 Aligned_cols=43 Identities=19% Similarity=0.096 Sum_probs=28.0
Q ss_pred cccceeeEEE-EecCCchH----H---HHHHHhc--------------------CCCCcEEEEEecCCCCC
Q psy7063 58 SKLTLKNVLF-REDCNADE----L---IDVINAN--------------------RVYLPCIYAYNKIDQIS 100 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd----~---~~~l~~~--------------------~~~kP~IlV~NKiDl~~ 100 (188)
.-+.+||++| +.|++..+ + ...+... ....|+|+|+||+|+.+
T Consensus 73 ~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 3478899998 88987432 1 1112110 12579999999999864
No 315
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=90.41 E-value=0.73 Score=37.20 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=25.0
Q ss_pred ccee-eEEE-EecCCch--HHH---HHHH----h---cCCCCcEEEEEecCCCCC
Q psy7063 60 LTLK-NVLF-REDCNAD--ELI---DVIN----A---NRVYLPCIYAYNKIDQIS 100 (188)
Q Consensus 60 i~~A-Dvvl-~~D~s~d--d~~---~~l~----~---~~~~kP~IlV~NKiDl~~ 100 (188)
+.++ +.++ ++|.+.. .+. +.+. . .....|+++|+||+|+..
T Consensus 69 ~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 69 LKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred HhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 4455 7776 8887632 221 2211 1 114689999999999863
No 316
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=90.34 E-value=0.31 Score=43.66 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccC--------------------------------CC--CCCCCC
Q psy7063 123 NLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG--------------------------------GT--STKYSP 168 (188)
Q Consensus 123 gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~g--------------------------------g~--~~k~~~ 168 (188)
+++.|...-+++|+++--||-.+-.+ ++-.+++| |. .+|-.|
T Consensus 270 ~~~~ii~~~y~lL~L~sFfT~g~~Ev----RaWti~~G~~Ap~AAG~IHsDfekgFIrAEV~~yddl~~~gs~~~~k~~G 345 (368)
T TIGR00092 270 GLNIIIRARYKLLLLSFFFTGGKEEV----RAWTRKGGWAAPQAAGIIHTDFETGFIAAEVISWDDFIYKKSSQGAKKGG 345 (368)
T ss_pred hHHHHHHHHHHHhCeeEEEcCCCcee----EEeecCCCCchhHhcCCcccccccCceEEEEecHHHHHHcCCHHHHHhcC
Confidence 55668888999999999999543322 45555555 22 122222
Q ss_pred --cccCCCccccCCCeEEE
Q psy7063 169 --QRVGLAHVMADEDVIQI 185 (188)
Q Consensus 169 --qrvg~d~~L~d~Dvv~i 185 (188)
+.-|+||+++||||+.+
T Consensus 346 k~r~eGK~YivqDGDIi~f 364 (368)
T TIGR00092 346 LMRLEGKYYVVDDGDVLFF 364 (368)
T ss_pred chhhcCCeEEeeCCeEEEE
Confidence 45799999999999986
No 317
>KOG0091|consensus
Probab=90.12 E-value=2 Score=34.76 Aligned_cols=76 Identities=21% Similarity=0.145 Sum_probs=46.2
Q ss_pred ceeeEEEEecCCchH-H---H----HHHHhcC-CCCcE-EEEEecCCCCCh-----HHHHHHhcC--CCEEEEecccccc
Q psy7063 61 TLKNVLFREDCNADE-L---I----DVINANR-VYLPC-IYAYNKIDQISI-----EEVDRIARQ--PNSVVVSCNMKLN 123 (188)
Q Consensus 61 ~~ADvvl~~D~s~dd-~---~----~~l~~~~-~~kP~-IlV~NKiDl~~~-----e~l~~l~~~--~~~vpISA~~~~g 123 (188)
++.-++++.|.|.-. + . +...... ..+++ ++|..|.|+.+. ++-+.+... -..|..||++|.|
T Consensus 81 nsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~N 160 (213)
T KOG0091|consen 81 NSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCN 160 (213)
T ss_pred cccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCc
Confidence 444466689987422 1 1 1111112 34554 678999999743 334444321 2479999999999
Q ss_pred HHH----HHHHHHHhcc
Q psy7063 124 LDY----LLDIIWLYLS 136 (188)
Q Consensus 124 ld~----L~~~I~~~L~ 136 (188)
+++ |-+.|+..+.
T Consensus 161 VeEAF~mlaqeIf~~i~ 177 (213)
T KOG0091|consen 161 VEEAFDMLAQEIFQAIQ 177 (213)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 987 6677776654
No 318
>KOG2485|consensus
Probab=89.95 E-value=0.52 Score=41.43 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=29.7
Q ss_pred cccceeeEEE-EecCC------chHHHHHHHhcCCCCcEEEEEecCCCCCh
Q psy7063 58 SKLTLKNVLF-REDCN------ADELIDVINANRVYLPCIYAYNKIDQISI 101 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s------~dd~~~~l~~~~~~kP~IlV~NKiDl~~~ 101 (188)
..+...|.+| +-|+. .+.+.+++ ..+|.|+|+||+|+++.
T Consensus 42 ~~l~~~D~iiEvrDaRiPLssrn~~~~~~~----~~k~riiVlNK~DLad~ 88 (335)
T KOG2485|consen 42 NRLPLVDCIIEVRDARIPLSSRNELFQDFL----PPKPRIIVLNKMDLADP 88 (335)
T ss_pred hhcccccEEEEeeccccCCccccHHHHHhc----CCCceEEEEecccccCc
Confidence 3578899998 77753 34455554 26999999999999974
No 319
>KOG0080|consensus
Probab=89.83 E-value=0.43 Score=38.47 Aligned_cols=93 Identities=12% Similarity=0.068 Sum_probs=57.8
Q ss_pred hchhhHHHHHHhhhhhcccceeeEEE-EecCCchH-HHH------HHHh--cCCCCcEEEEEecCCCCChH-----H-HH
Q psy7063 42 HYYYKSARAYEADTLPSKLTLKNVLF-REDCNADE-LID------VINA--NRVYLPCIYAYNKIDQISIE-----E-VD 105 (188)
Q Consensus 42 ~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~dd-~~~------~l~~--~~~~kP~IlV~NKiDl~~~e-----~-l~ 105 (188)
.+-.+|=+|...++..+-.+.|.-+| +.|+|.-| +.. .+.. ...+.-.++|.||+|..++. + +.
T Consensus 63 aiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~k 142 (209)
T KOG0080|consen 63 AIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLK 142 (209)
T ss_pred EEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHH
Confidence 45567778888888888889999887 89987432 221 1111 11234568899999975321 1 22
Q ss_pred HHhcC-CCEEEEeccccccHHHHHHHHHHh
Q psy7063 106 RIARQ-PNSVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 106 ~l~~~-~~~vpISA~~~~gld~L~~~I~~~ 134 (188)
...+. .-.+.+||++.+|++..-+.+.+.
T Consensus 143 fAr~h~~LFiE~SAkt~~~V~~~FeelveK 172 (209)
T KOG0080|consen 143 FARKHRCLFIECSAKTRENVQCCFEELVEK 172 (209)
T ss_pred HHHhhCcEEEEcchhhhccHHHHHHHHHHH
Confidence 11121 236789999999997655554443
No 320
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=89.81 E-value=0.17 Score=35.97 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=10.8
Q ss_pred CcccCCCccccCCCeEEEe
Q psy7063 168 PQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 168 ~qrvg~d~~L~d~Dvv~iv 186 (188)
|+.+..||+|+|||-|||.
T Consensus 53 Gk~~~~d~~L~~GDRVEIY 71 (84)
T PF03658_consen 53 GKLVKLDTVLRDGDRVEIY 71 (84)
T ss_dssp E-S--TT-B--TT-EEEEE
T ss_pred eeEcCCCCcCCCCCEEEEe
Confidence 5678899999999999996
No 321
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=89.79 E-value=1.2 Score=40.66 Aligned_cols=58 Identities=24% Similarity=0.264 Sum_probs=38.3
Q ss_pred CCCcEEEEEecCCCCChHHH-------HHH-h----------------------cC----CCEEEEeccccccHHHHHHH
Q psy7063 85 VYLPCIYAYNKIDQISIEEV-------DRI-A----------------------RQ----PNSVVVSCNMKLNLDYLLDI 130 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~~e~l-------~~l-~----------------------~~----~~~vpISA~~~~gld~L~~~ 130 (188)
...|+|+|++|+|+.+.+.+ ..+ . +. -+++.+||.+|.|++- ++.
T Consensus 254 ~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl-L~e 332 (527)
T COG5258 254 MELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDL-LDE 332 (527)
T ss_pred hcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHH-HHH
Confidence 36899999999999875532 111 0 00 1245599999999875 566
Q ss_pred HHHhcccceeeeCC
Q psy7063 131 IWLYLSLIRVYTKK 144 (188)
Q Consensus 131 I~~~L~~irVY~k~ 144 (188)
+|..|+.-| |.+.
T Consensus 333 ~f~~Lp~rr-~~~d 345 (527)
T COG5258 333 FFLLLPKRR-RWDD 345 (527)
T ss_pred HHHhCCccc-ccCC
Confidence 777777555 4433
No 322
>PLN00023 GTP-binding protein; Provisional
Probab=88.80 E-value=0.52 Score=41.70 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=27.8
Q ss_pred ccceeeEEE-EecCCchHHH-------HHHHhcC-------------CCCcEEEEEecCCCCC
Q psy7063 59 KLTLKNVLF-REDCNADELI-------DVINANR-------------VYLPCIYAYNKIDQIS 100 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~-------~~l~~~~-------------~~kP~IlV~NKiDl~~ 100 (188)
-+.+||++| +.|++..+-. +.+.... ...|+++|+||+|+..
T Consensus 103 yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 103 FYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 378899997 8898753321 1222111 1379999999999864
No 323
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=88.66 E-value=4.3 Score=32.23 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=35.6
Q ss_pred CCcEEEEEecCCCCChHH--------------HHHHh-----c---CCCEEEEecc--ccccHHHHHHHHHHhcc
Q psy7063 86 YLPCIYAYNKIDQISIEE--------------VDRIA-----R---QPNSVVVSCN--MKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 86 ~kP~IlV~NKiDl~~~e~--------------l~~l~-----~---~~~~vpISA~--~~~gld~L~~~I~~~L~ 136 (188)
..|+++|.||+|+..... +.... . ....+.+||+ .+.+++.+...+...+.
T Consensus 111 ~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 111 DVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred CceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 589999999999975421 11000 1 1236789999 99999998888777663
No 324
>KOG0071|consensus
Probab=88.59 E-value=2.4 Score=33.49 Aligned_cols=51 Identities=14% Similarity=-0.117 Sum_probs=34.2
Q ss_pred CCCcEEEEEecCCCCCh---HHHHHHhc---C--C--CEEEEeccccccHHHHHHHHHHhc
Q psy7063 85 VYLPCIYAYNKIDQISI---EEVDRIAR---Q--P--NSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~~---e~l~~l~~---~--~--~~vpISA~~~~gld~L~~~I~~~L 135 (188)
...|.++.+||-|+++. .++....+ . . -+.|.||.+|.|+.+=+..+.+.+
T Consensus 117 ~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 117 RDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred hcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 36899999999999743 34432221 1 1 268899999999877555555544
No 325
>KOG0081|consensus
Probab=88.36 E-value=2.3 Score=34.31 Aligned_cols=81 Identities=9% Similarity=0.011 Sum_probs=44.6
Q ss_pred HHHHhhhhhcccceeeEEE-EecCCchH-H------HHHHHhcC-C-CCcEEEEEecCCCCChHH-----HHHHh-cC-C
Q psy7063 49 RAYEADTLPSKLTLKNVLF-REDCNADE-L------IDVINANR-V-YLPCIYAYNKIDQISIEE-----VDRIA-RQ-P 111 (188)
Q Consensus 49 ~a~~~~~~~~~i~~ADvvl-~~D~s~dd-~------~~~l~~~~-~-~kP~IlV~NKiDl~~~e~-----l~~l~-~~-~ 111 (188)
+|...-+...-.++|---| +.|.|.+. + ..++.... . .--+++..||+|+.+... ...+. .+ -
T Consensus 77 QERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl 156 (219)
T KOG0081|consen 77 QERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL 156 (219)
T ss_pred HHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCC
Confidence 3333333333345554444 78888653 1 22332211 1 234788899999975422 22232 22 2
Q ss_pred CEEEEeccccccHHHHHH
Q psy7063 112 NSVVVSCNMKLNLDYLLD 129 (188)
Q Consensus 112 ~~vpISA~~~~gld~L~~ 129 (188)
+.+..||-+|.|+++-.+
T Consensus 157 PYfETSA~tg~Nv~kave 174 (219)
T KOG0081|consen 157 PYFETSACTGTNVEKAVE 174 (219)
T ss_pred CeeeeccccCcCHHHHHH
Confidence 488899999999876333
No 326
>COG3596 Predicted GTPase [General function prediction only]
Probab=87.81 E-value=3.9 Score=35.50 Aligned_cols=78 Identities=10% Similarity=0.161 Sum_probs=51.0
Q ss_pred cceeeEEE-EecCC------chHHHHHHHhcCCCCcEEEEEecCCCCCh------------HHHHHH--------h----
Q psy7063 60 LTLKNVLF-REDCN------ADELIDVINANRVYLPCIYAYNKIDQISI------------EEVDRI--------A---- 108 (188)
Q Consensus 60 i~~ADvvl-~~D~s------~dd~~~~l~~~~~~kP~IlV~NKiDl~~~------------e~l~~l--------~---- 108 (188)
+..+|++| +.|+. ++++...+......+|+|+|+|-+|...+ ..+..+ .
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q 194 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQ 194 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 56688886 55543 44555444333345999999999997632 011111 1
Q ss_pred cCCCEEEEeccccccHHHHHHHHHHhccc
Q psy7063 109 RQPNSVVVSCNMKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 109 ~~~~~vpISA~~~~gld~L~~~I~~~L~~ 137 (188)
+-.+++..|+..++|++.|..++...++.
T Consensus 195 ~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 195 EVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred hcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 11246777888999999999999998873
No 327
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=87.53 E-value=2.5 Score=36.02 Aligned_cols=43 Identities=14% Similarity=0.032 Sum_probs=26.1
Q ss_pred eeeEEE-EecCC---c-hHHHHHHHhcCCCCcEEEEEecCCCCChHHH
Q psy7063 62 LKNVLF-REDCN---A-DELIDVINANRVYLPCIYAYNKIDQISIEEV 104 (188)
Q Consensus 62 ~ADvvl-~~D~s---~-dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~l 104 (188)
.+|+++ +.+.+ . +...+.+......+|+|+|+||+|+...+++
T Consensus 114 rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~v~vi~VinK~D~l~~~e~ 161 (276)
T cd01850 114 RVHACLYFIEPTGHGLKPLDIEFMKRLSKRVNIIPVIAKADTLTPEEL 161 (276)
T ss_pred ceEEEEEEEeCCCCCCCHHHHHHHHHHhccCCEEEEEECCCcCCHHHH
Confidence 467776 55543 1 2213334333346899999999999865443
No 328
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=87.16 E-value=0.34 Score=34.39 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=14.9
Q ss_pred cccCCCccccCCCeEEE
Q psy7063 169 QRVGLAHVMADEDVIQI 185 (188)
Q Consensus 169 qrvg~d~~L~d~Dvv~i 185 (188)
+.-|+||+++||||+.+
T Consensus 65 r~eGK~Yiv~DGDi~~f 81 (83)
T cd04867 65 RQEGKDYVVQDGDIIFF 81 (83)
T ss_pred hhhCCceEeeCCeEEEE
Confidence 45799999999999975
No 329
>KOG1707|consensus
Probab=86.35 E-value=0.49 Score=44.70 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=42.6
Q ss_pred cceeeEEE-EecCCchHHHHHHH--------h---cCCCCcEEEEEecCCCCChH-----H-H-HHHhcCC---CEEEEe
Q psy7063 60 LTLKNVLF-REDCNADELIDVIN--------A---NRVYLPCIYAYNKIDQISIE-----E-V-DRIARQP---NSVVVS 117 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~~~l~--------~---~~~~kP~IlV~NKiDl~~~e-----~-l-~~l~~~~---~~vpIS 117 (188)
++.|||+. +..++.+.-.+.+. . .-...|+|+|.||+|..... . . .-+..|. ..|.+|
T Consensus 77 irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecS 156 (625)
T KOG1707|consen 77 IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECS 156 (625)
T ss_pred HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhh
Confidence 78999996 66566544333321 1 11358999999999986432 1 1 1112232 357899
Q ss_pred ccccccHHHHH
Q psy7063 118 CNMKLNLDYLL 128 (188)
Q Consensus 118 A~~~~gld~L~ 128 (188)
|++-.++.++.
T Consensus 157 A~~~~n~~e~f 167 (625)
T KOG1707|consen 157 ALTLANVSELF 167 (625)
T ss_pred hhhhhhhHhhh
Confidence 99988876543
No 330
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=86.35 E-value=0.84 Score=38.78 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=26.9
Q ss_pred ccceeeEEE-EecCCch---HHHHHHHh-cCCCCcEEEEEecCCCCC
Q psy7063 59 KLTLKNVLF-REDCNAD---ELIDVINA-NRVYLPCIYAYNKIDQIS 100 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d---d~~~~l~~-~~~~kP~IlV~NKiDl~~ 100 (188)
.+..+|.++ ++|++.. .....+.. ....+|+++++||+|+..
T Consensus 91 ~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 91 TLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREG 137 (267)
T ss_pred HHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCC
Confidence 367899987 7887632 11111111 224689999999999864
No 331
>KOG0097|consensus
Probab=86.31 E-value=1.1 Score=35.27 Aligned_cols=41 Identities=20% Similarity=0.066 Sum_probs=26.8
Q ss_pred CCcEEEEEecCCCCChH-----HHHHHhcCC--CEEEEeccccccHHH
Q psy7063 86 YLPCIYAYNKIDQISIE-----EVDRIARQP--NSVVVSCNMKLNLDY 126 (188)
Q Consensus 86 ~kP~IlV~NKiDl~~~e-----~l~~l~~~~--~~vpISA~~~~gld~ 126 (188)
+.-++++.||+|+.+.. +...+.+.. -.+..||++|.|+++
T Consensus 116 nt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nved 163 (215)
T KOG0097|consen 116 NTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVED 163 (215)
T ss_pred ceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHH
Confidence 34578899999986432 222232211 256799999999976
No 332
>PTZ00416 elongation factor 2; Provisional
Probab=86.11 E-value=1.2 Score=43.98 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=27.3
Q ss_pred cccceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCC
Q psy7063 58 SKLTLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQI 99 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~ 99 (188)
.++..||..+ ++|++.. .+..++. ...+|+|+++||+|+.
T Consensus 111 ~al~~~D~ailVvda~~g~~~~t~~~~~~~~--~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 111 AALRVTDGALVVVDCVEGVCVQTETVLRQAL--QERIRPVLFINKVDRA 157 (836)
T ss_pred HHHhcCCeEEEEEECCCCcCccHHHHHHHHH--HcCCCEEEEEEChhhh
Confidence 4578899987 7886521 2223332 2358999999999986
No 333
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=85.15 E-value=0.59 Score=28.86 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=19.7
Q ss_pred CCCCcccCCCccccCCCeEEEee
Q psy7063 165 KYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 165 k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
+..|+.++++|.|.++|.|++++
T Consensus 38 ~vn~~~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 38 LVNGQLVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred EECCEECCCCcCcCCCCEEEEeC
Confidence 34678899999999999999974
No 334
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=83.75 E-value=1.5 Score=36.81 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=42.9
Q ss_pred ccceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCCCh--H-HHHHHhc-C-CCEEE--EeccccccH
Q psy7063 59 KLTLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQISI--E-EVDRIAR-Q-PNSVV--VSCNMKLNL 124 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~~~--e-~l~~l~~-~-~~~vp--ISA~~~~gl 124 (188)
.+..||.++ ++|++.. .+...+ ....+|.++++||+|.... + .++.+.. + ...++ ++..++.++
T Consensus 84 ~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~--~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~~~~~ 161 (268)
T cd04170 84 ALRAADAALVVVSAQSGVEVGTEKLWEFA--DEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGEGDDF 161 (268)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHHHHHHH--HHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccCCCce
Confidence 467889987 7887632 122222 2246899999999998743 2 2333332 2 23444 446677777
Q ss_pred HHHHHHHHH
Q psy7063 125 DYLLDIIWL 133 (188)
Q Consensus 125 d~L~~~I~~ 133 (188)
..+.+.+..
T Consensus 162 ~~~vd~~~~ 170 (268)
T cd04170 162 KGVVDLLTE 170 (268)
T ss_pred eEEEEcccC
Confidence 666555533
No 335
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=82.31 E-value=0.9 Score=33.12 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=32.6
Q ss_pred EEEe-ccccccHHHHHHHHHHhcc--cceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEeeC
Q psy7063 114 VVVS-CNMKLNLDYLLDIIWLYLS--LIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVKK 188 (188)
Q Consensus 114 vpIS-A~~~~gld~L~~~I~~~L~--~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~~ 188 (188)
+.+. ......+.+|...|.+.+- ..-+|.+ .+.+ -|--++|=.+ .|-..-| +.+|+|+|||.|.++|.
T Consensus 22 v~l~~~~~~~ti~~Li~~l~~nll~~r~elF~~-~~~v--rPGILvLINd-~DwEl~g---~~~y~l~~~D~I~FiST 92 (96)
T PF09138_consen 22 VSLPSDGEPATIKDLIDYLRDNLLKERPELFLE-GGSV--RPGILVLIND-ADWELLG---EEDYVLKDGDNITFIST 92 (96)
T ss_dssp EEE-SSCSC-BHHHHHHHHCCCT-SSGHHHHBS-SSSB---TTEEEEETT-CEHHHHT---CCCSB--TTEEEEEEET
T ss_pred EEcCCCCCCcCHHHHHHHHHHhccCCCHhHEec-CCeE--cCcEEEEEcC-ccceeec---CcceEcCCCCEEEEEcc
Confidence 3343 4467788888888887542 1112222 1222 2222222111 1111111 67999999999999973
No 336
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=81.35 E-value=8.7 Score=35.54 Aligned_cols=76 Identities=9% Similarity=0.191 Sum_probs=42.1
Q ss_pred cc-eeeEEE-Ee-cCC------c------hHHHHHHHhcCCCCcEEEEEecCCCC-Ch-HHH-HHHh-cCC-CEEEEecc
Q psy7063 60 LT-LKNVLF-RE-DCN------A------DELIDVINANRVYLPCIYAYNKIDQI-SI-EEV-DRIA-RQP-NSVVVSCN 119 (188)
Q Consensus 60 i~-~ADvvl-~~-D~s------~------dd~~~~l~~~~~~kP~IlV~NKiDl~-~~-e~l-~~l~-~~~-~~vpISA~ 119 (188)
|. ++|+-| +. |.+ . +..++.+ ....+|.++|+||+|-. +. ..+ ..+. .+. +++++|+.
T Consensus 141 I~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL--k~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~ 218 (492)
T TIGR02836 141 IQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL--KELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVE 218 (492)
T ss_pred HHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH--HhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHH
Confidence 55 888887 44 664 1 1122223 23579999999999933 22 222 2332 222 47888875
Q ss_pred c--cccHHHHHHHHHHhccc
Q psy7063 120 M--KLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 120 ~--~~gld~L~~~I~~~L~~ 137 (188)
. ...+..+++.+.-.++.
T Consensus 219 ~l~~~DI~~il~~vL~EFPv 238 (492)
T TIGR02836 219 SMRESDILSVLEEVLYEFPI 238 (492)
T ss_pred HcCHHHHHHHHHHHHhcCCc
Confidence 3 44455555554444443
No 337
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=81.19 E-value=1.1 Score=28.47 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=19.7
Q ss_pred CCCCcccCCCccccCCCeEEEee
Q psy7063 165 KYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 165 k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
+..|+.+..++.|.+||.|++++
T Consensus 38 ~vng~~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 38 KVNGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred EECCEECCCCCCCCCCCEEEEEC
Confidence 35677899999999999999974
No 338
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=80.72 E-value=16 Score=28.27 Aligned_cols=64 Identities=16% Similarity=-0.041 Sum_probs=33.0
Q ss_pred cceeEEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCc--------hHHHHHHHhcCCCCcEEEEEecCC
Q psy7063 27 WSKGTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNA--------DELIDVINANRVYLPCIYAYNKID 97 (188)
Q Consensus 27 ~~~~~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~--------dd~~~~l~~~~~~kP~IlV~NKiD 97 (188)
-|+.-|+.+++.-. +...+++++.........++|.++ ++|+.. +.+.+|+.. - -++|+||+|
T Consensus 86 ~~d~I~IEt~G~~~---p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~----a-d~ivlnk~d 157 (158)
T cd03112 86 AFDRIVIETTGLAD---PGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF----A-DRILLNKTD 157 (158)
T ss_pred CCCEEEEECCCcCC---HHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH----C-CEEEEeccc
Confidence 46667777665211 223333332222223466777777 788641 112334432 1 277999999
Q ss_pred C
Q psy7063 98 Q 98 (188)
Q Consensus 98 l 98 (188)
+
T Consensus 158 l 158 (158)
T cd03112 158 L 158 (158)
T ss_pred C
Confidence 5
No 339
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=80.42 E-value=2 Score=28.54 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy7063 3 ILEKISEIEKEIARTQKNKV 22 (188)
Q Consensus 3 i~~~i~~~e~e~~~~~~~~~ 22 (188)
+.+||+-||+||+|++..++
T Consensus 26 L~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 26 LEERIALLEAEIARLEAAIA 45 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999987554
No 340
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=80.14 E-value=1.5 Score=30.92 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=17.8
Q ss_pred CCcccCCCccccCCCeEEEe
Q psy7063 167 SPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 167 ~~qrvg~d~~L~d~Dvv~iv 186 (188)
+|+.|+.||.++|||.|.+.
T Consensus 55 NG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 55 NGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred CCEECCCcccCCCCCEEEEE
Confidence 66789999999999999885
No 341
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=79.25 E-value=6.6 Score=28.18 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=37.9
Q ss_pred ccccHHHHHHHHHHhccc--ceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 120 MKLNLDYLLDIIWLYLSL--IRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~~--irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
.+..+.+|++.+.+..+- -++|.. .|.. -|.-.++ -+|.+.+|- =|.|++|+|||.|.|++
T Consensus 27 ~~~tV~dll~~L~~~~~~~~~~lf~~-~g~l--r~~i~Vl-vN~~di~~l---~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 27 KPVTVGDLLDYVASNLLEERPDLFIE-GGSV--RPGIIVL-INDTDWELL---GEEDYILEDGDHVVFIS 89 (94)
T ss_pred CCCcHHHHHHHHHHhCchhhhhhEec-CCcc--cCCEEEE-ECCcccccc---CCcccCCCCcCEEEEEC
Confidence 567889999998876542 223333 3333 2222333 335555532 17999999999999974
No 342
>KOG4252|consensus
Probab=78.72 E-value=2.6 Score=34.59 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=31.0
Q ss_pred CCCcEEEEEecCCCCCh-----HHHHHHhc--CCCEEEEeccccccHHHHHHH
Q psy7063 85 VYLPCIYAYNKIDQISI-----EEVDRIAR--QPNSVVVSCNMKLNLDYLLDI 130 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~~-----e~l~~l~~--~~~~vpISA~~~~gld~L~~~ 130 (188)
..+|.++|-||||++.. ++++.+.+ ....+.+|++...|+...-..
T Consensus 123 ~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~Y 175 (246)
T KOG4252|consen 123 ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAY 175 (246)
T ss_pred ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence 46999999999999743 23333321 123577899999998654333
No 343
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=78.51 E-value=2.7 Score=22.67 Aligned_cols=18 Identities=17% Similarity=0.573 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHhh
Q psy7063 2 GILEKISEIEKEIARTQK 19 (188)
Q Consensus 2 ~i~~~i~~~e~e~~~~~~ 19 (188)
..+.||.|||.+++.-..
T Consensus 5 rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 5 RLRNRISDLERQLSECRR 22 (23)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 468999999999986543
No 344
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=78.28 E-value=3.6 Score=39.87 Aligned_cols=42 Identities=10% Similarity=0.050 Sum_probs=27.0
Q ss_pred cccceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEEEEEecCCCC
Q psy7063 58 SKLTLKNVLF-REDCNA---DELIDVINA-NRVYLPCIYAYNKIDQI 99 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~IlV~NKiDl~ 99 (188)
.++..||.++ ++|+.. .+....+.. ....+|.++++||+|..
T Consensus 105 ~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 105 RAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRL 151 (720)
T ss_pred HHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcc
Confidence 3578899997 788653 121222211 23457889999999986
No 345
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.01 E-value=1.8 Score=31.22 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=13.5
Q ss_pred CCccccCCCeEEEee
Q psy7063 173 LAHVMADEDVIQIVK 187 (188)
Q Consensus 173 ~d~~L~d~Dvv~iv~ 187 (188)
++|.|+|||+|.++|
T Consensus 77 e~y~ledgDiIvfis 91 (96)
T COG5131 77 ERYPLEDGDIIVFIS 91 (96)
T ss_pred ccccCCCCCEEEEEe
Confidence 469999999999987
No 346
>KOG0393|consensus
Probab=75.40 E-value=6.2 Score=32.44 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=56.3
Q ss_pred hchhhHHHHHHhhhhhcccceeeEEE-EecCCchH-HHH-------HHHhcCCCCcEEEEEecCCCCChH-HHHHH----
Q psy7063 42 HYYYKSARAYEADTLPSKLTLKNVLF-REDCNADE-LID-------VINANRVYLPCIYAYNKIDQISIE-EVDRI---- 107 (188)
Q Consensus 42 ~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~dd-~~~-------~l~~~~~~kP~IlV~NKiDl~~~e-~l~~l---- 107 (188)
.|-.+|.++.-.++...+..++|++| ...+...+ +.. .+.......|+|+|+.|.|+-+.. .++.+
T Consensus 56 ~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~ 135 (198)
T KOG0393|consen 56 GLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQG 135 (198)
T ss_pred eeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhcc
Confidence 34555666666666667789999997 35443222 221 122122468999999999987332 22111
Q ss_pred ------------h-cC--CCEEEEeccccccHHHHHH-HHHHhcc
Q psy7063 108 ------------A-RQ--PNSVVVSCNMKLNLDYLLD-IIWLYLS 136 (188)
Q Consensus 108 ------------~-~~--~~~vpISA~~~~gld~L~~-~I~~~L~ 136 (188)
. .. ...+.+||++..|+.+.-+ ++...|.
T Consensus 136 ~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 136 LEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred CCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 1 11 2468899999999866443 3444443
No 347
>PRK06437 hypothetical protein; Provisional
Probab=73.70 E-value=2.8 Score=28.16 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.2
Q ss_pred CCcccCCCccccCCCeEEEee
Q psy7063 167 SPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 167 ~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
.|+-|..++.|+|||.|+|+.
T Consensus 42 Ng~iv~~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 42 NGSPVLEDHNVKKEDDVLILE 62 (67)
T ss_pred CCEECCCceEcCCCCEEEEEe
Confidence 445566999999999999974
No 348
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=73.02 E-value=2.8 Score=27.60 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=15.9
Q ss_pred cccCCCccccCCCeEEEee
Q psy7063 169 QRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 169 qrvg~d~~L~d~Dvv~iv~ 187 (188)
+..-.++.|+|||.|+|++
T Consensus 43 r~~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 43 RSQHASTALREGDVVEIVH 61 (66)
T ss_pred HHHcCcccCCCCCEEEEEE
Confidence 4455889999999999985
No 349
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=72.69 E-value=4.2 Score=40.21 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=27.3
Q ss_pred cccceeeEEE-EecCCch------HHHHHHHhcCCCCcEEEEEecCCCC
Q psy7063 58 SKLTLKNVLF-REDCNAD------ELIDVINANRVYLPCIYAYNKIDQI 99 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d------d~~~~l~~~~~~kP~IlV~NKiDl~ 99 (188)
.++.-+|..+ ++|++.. .+..++. ...+|+++++||+|..
T Consensus 117 ~al~~~D~ailVvda~~Gv~~~t~~~~~~~~--~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 117 AALRITDGALVVVDCIEGVCVQTETVLRQAL--GERIRPVLTVNKMDRC 163 (843)
T ss_pred HHHhhcCEEEEEEECCCCCcccHHHHHHHHH--HCCCCEEEEEECCccc
Confidence 3577888886 7886522 2233332 3468999999999987
No 350
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=71.24 E-value=13 Score=34.50 Aligned_cols=71 Identities=25% Similarity=0.316 Sum_probs=46.3
Q ss_pred CCcEEEEEecCCCCC---------hHHHHHH----h----cC-CCEEEEeccccccHHHHHHHHHHhcccceeee-CCCC
Q psy7063 86 YLPCIYAYNKIDQIS---------IEEVDRI----A----RQ-PNSVVVSCNMKLNLDYLLDIIWLYLSLIRVYT-KKPG 146 (188)
Q Consensus 86 ~kP~IlV~NKiDl~~---------~e~l~~l----~----~~-~~~vpISA~~~~gld~L~~~I~~~L~~irVY~-k~~g 146 (188)
..|+++|++|+|... .+.++.+ . .+ ...|.+|++.+.+++-|...|...+. =|+ +.+.
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~---~~~f~~~~ 272 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLY---GFPFKTPA 272 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhc---cCCCCCCc
Confidence 489999999999742 1212211 1 22 24678999999999999988776542 122 2233
Q ss_pred CCCCCCCcEEeccC
Q psy7063 147 APPDFDDGLILRKG 160 (188)
Q Consensus 147 ~~~d~~~p~il~~g 160 (188)
.. .-.+++.+|.|
T Consensus 273 ~v-v~~d~ifIP~G 285 (472)
T PF05783_consen 273 QV-VERDAIFIPAG 285 (472)
T ss_pred ee-ecccccccCCC
Confidence 33 35669999999
No 351
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=70.42 E-value=3.5 Score=28.02 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=17.1
Q ss_pred CCcccC----CCccccCCCeEEEee
Q psy7063 167 SPQRVG----LAHVMADEDVIQIVK 187 (188)
Q Consensus 167 ~~qrvg----~d~~L~d~Dvv~iv~ 187 (188)
.|+-|. .||.|++||.|+|+.
T Consensus 39 Ng~iVpr~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 39 NGEIVPRSQWADTILKEGDRIEVVR 63 (68)
T ss_pred CCEEccchhhhhccccCCCEEEEEE
Confidence 445566 899999999999984
No 352
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=69.96 E-value=4.9 Score=34.90 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=13.5
Q ss_pred CCCcEEEEEecCCCCC
Q psy7063 85 VYLPCIYAYNKIDQIS 100 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~ 100 (188)
..+|+++++||.|+..
T Consensus 227 ~~~pill~~NK~D~f~ 242 (317)
T cd00066 227 ANTSIILFLNKKDLFE 242 (317)
T ss_pred cCCCEEEEccChHHHH
Confidence 4689999999999753
No 353
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=69.85 E-value=3.5 Score=27.16 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=12.8
Q ss_pred CccccCCCeEEEee
Q psy7063 174 AHVMADEDVIQIVK 187 (188)
Q Consensus 174 d~~L~d~Dvv~iv~ 187 (188)
++.|+|||.|+|++
T Consensus 47 ~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 47 QFVLHEGDRIEILS 60 (65)
T ss_pred ccccCCCCEEEEEE
Confidence 88999999999974
No 354
>PRK13695 putative NTPase; Provisional
Probab=69.76 E-value=49 Score=25.52 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=50.0
Q ss_pred hHHHHHHhhhhhcccceeeEEEEecCC-----chHHHHHHHh-cCCCCcEEEEEecCCCCChHHHHHHhcCCCEEEEecc
Q psy7063 46 KSARAYEADTLPSKLTLKNVLFREDCN-----ADELIDVINA-NRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCN 119 (188)
Q Consensus 46 ~~~~a~~~~~~~~~i~~ADvvl~~D~s-----~dd~~~~l~~-~~~~kP~IlV~NKiDl~~~e~l~~l~~~~~~vpISA~ 119 (188)
+.+.+++..+....+..++++++-+.. ...+.+.+.. ....+|+|++.||.... ...+++...++.. +=..
T Consensus 80 sgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~~~--~~~~~i~~~~~~~-i~~~ 156 (174)
T PRK13695 80 EDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRSVH--PFVQEIKSRPGGR-VYEL 156 (174)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchhhH--HHHHHHhccCCcE-EEEE
Confidence 345566666666778899997765432 1122233322 23568999999995332 2233343323221 1222
Q ss_pred ccccHHHHHHHHHHhc
Q psy7063 120 MKLNLDYLLDIIWLYL 135 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L 135 (188)
+.+|-++|...|.+.+
T Consensus 157 ~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 157 TPENRDSLPFEILNRL 172 (174)
T ss_pred cchhhhhHHHHHHHHH
Confidence 6788889988888754
No 355
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=69.52 E-value=6.4 Score=34.69 Aligned_cols=15 Identities=33% Similarity=0.301 Sum_probs=13.2
Q ss_pred CCCcEEEEEecCCCC
Q psy7063 85 VYLPCIYAYNKIDQI 99 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~ 99 (188)
...|+++++||.|+.
T Consensus 250 ~~~piil~~NK~D~~ 264 (342)
T smart00275 250 ANTSIILFLNKIDLF 264 (342)
T ss_pred cCCcEEEEEecHHhH
Confidence 468999999999975
No 356
>KOG4423|consensus
Probab=69.23 E-value=7.2 Score=32.23 Aligned_cols=49 Identities=18% Similarity=0.123 Sum_probs=35.9
Q ss_pred CCcEEEEEecCCCCChH------HHHHHh---cCCCEEEEeccccccHHHHHHHHHHh
Q psy7063 86 YLPCIYAYNKIDQISIE------EVDRIA---RQPNSVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 86 ~kP~IlV~NKiDl~~~e------~l~~l~---~~~~~vpISA~~~~gld~L~~~I~~~ 134 (188)
..|+++..||+|..... .++.+. .|...+.+||+.+.++++..+.+.+.
T Consensus 135 Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 135 PVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEK 192 (229)
T ss_pred cchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHH
Confidence 57899999999986321 123332 25568899999999999988777665
No 357
>KOG3905|consensus
Probab=68.58 E-value=11 Score=33.77 Aligned_cols=72 Identities=22% Similarity=0.253 Sum_probs=46.0
Q ss_pred CCcEEEEEecCCCCCh---------HHHHHH----hcC-----CCEEEEeccccccHHHHHHHHHHhcccceeeeCCCCC
Q psy7063 86 YLPCIYAYNKIDQISI---------EEVDRI----ARQ-----PNSVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGA 147 (188)
Q Consensus 86 ~kP~IlV~NKiDl~~~---------e~l~~l----~~~-----~~~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~ 147 (188)
.+|+++|++|+|..+- +.++.+ .+| ...|..|++...|++-|...|...+. .--|+ .|..
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y-G~~ft-tpAl 299 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY-GFPFT-TPAL 299 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc-CcccC-Ccce
Confidence 5899999999998431 112212 122 24688999999999999998876532 11122 2222
Q ss_pred CCCCCCcEEeccC
Q psy7063 148 PPDFDDGLILRKG 160 (188)
Q Consensus 148 ~~d~~~p~il~~g 160 (188)
+. -.+++.+|.|
T Consensus 300 VV-EkdaVfIPAG 311 (473)
T KOG3905|consen 300 VV-EKDAVFIPAG 311 (473)
T ss_pred Ee-ecceeEeccC
Confidence 22 4567888888
No 358
>KOG1954|consensus
Probab=68.10 E-value=9.1 Score=34.92 Aligned_cols=45 Identities=22% Similarity=0.198 Sum_probs=29.7
Q ss_pred cceeeEEE-EecCC----chHHHHHHHhcCC-CCcEEEEEecCCCCChHHH
Q psy7063 60 LTLKNVLF-REDCN----ADELIDVINANRV-YLPCIYAYNKIDQISIEEV 104 (188)
Q Consensus 60 i~~ADvvl-~~D~s----~dd~~~~l~~~~~-~kP~IlV~NKiDl~~~e~l 104 (188)
+..||.+| +.|+. .|++...+...+. .-.+=+|+||+|.++.+++
T Consensus 179 aeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqVdtqqL 229 (532)
T KOG1954|consen 179 AERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQVDTQQL 229 (532)
T ss_pred HHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEeccccccCHHHH
Confidence 57899997 77753 3344444443332 3457788999999987765
No 359
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=67.63 E-value=8.1 Score=24.29 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhh
Q psy7063 2 GILEKISEIEKEIARTQKNKVL 23 (188)
Q Consensus 2 ~i~~~i~~~e~e~~~~~~~~~~ 23 (188)
.|-+||.+|.+||+..|+.|..
T Consensus 16 ~IEqkiedid~qIaeLe~KR~~ 37 (46)
T PF08946_consen 16 NIEQKIEDIDEQIAELEAKRQR 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHHHH
Confidence 4778999999999999988764
No 360
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=66.30 E-value=5 Score=26.21 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.5
Q ss_pred CCCccccCCCeEEEee
Q psy7063 172 GLAHVMADEDVIQIVK 187 (188)
Q Consensus 172 g~d~~L~d~Dvv~iv~ 187 (188)
..++.|+|||.|+|+.
T Consensus 45 ~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 45 HAARALAAGDRLDLVQ 60 (65)
T ss_pred cccccCCCCCEEEEEe
Confidence 4478999999999974
No 361
>KOG4146|consensus
Probab=66.00 E-value=4.5 Score=29.39 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=14.2
Q ss_pred CCCccccCCCeEEEee
Q psy7063 172 GLAHVMADEDVIQIVK 187 (188)
Q Consensus 172 g~d~~L~d~Dvv~iv~ 187 (188)
.+||.|+|||.|-++|
T Consensus 81 kedy~ledgD~ivfiS 96 (101)
T KOG4146|consen 81 KEDYPLEDGDHIVFIS 96 (101)
T ss_pred ccccCcccCCEEEEEE
Confidence 3689999999999887
No 362
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=65.58 E-value=5.4 Score=34.21 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=32.6
Q ss_pred ecCCchHHHHHHHh--cCCCCcEEEEEecCC--CCCh-HHHHHHh----c-CCCEEEEeccccccHHH
Q psy7063 69 EDCNADELIDVINA--NRVYLPCIYAYNKID--QISI-EEVDRIA----R-QPNSVVVSCNMKLNLDY 126 (188)
Q Consensus 69 ~D~s~dd~~~~l~~--~~~~kP~IlV~NKiD--l~~~-e~l~~l~----~-~~~~vpISA~~~~gld~ 126 (188)
.+|+.++... +.. ....||+++|+|+.| .... .....+. . ...++++||+-+.-+.+
T Consensus 177 ~~~~~~e~~~-l~~~~llt~KP~i~v~N~~e~d~~~~~~~~~~~~~~~~~~~~~~i~~sa~~E~eL~~ 243 (274)
T cd01900 177 LELTEEEIEI-LNSLQLLTAKPVLYVANVSEDDLANGNNKVLKVREIAAKEGAEVIPISAKIEAELAE 243 (274)
T ss_pred CCCCHHHHHH-HHHHhHhhcCCceeecccCHHHhccccHHHHHHHHHHhcCCCeEEEeeHHHHHHHHc
Confidence 4677665322 221 234699999999998 3221 2222221 1 23589999987765543
No 363
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=65.53 E-value=5 Score=27.53 Aligned_cols=57 Identities=9% Similarity=0.049 Sum_probs=34.1
Q ss_pred EEEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEe
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv 186 (188)
...++...+..+.+|++.+....+... .. +. .+.+- .+++.++.|+.|+|||.|.|+
T Consensus 20 ~~~~~~~~~~tv~~L~~~l~~~~p~l~-------~~--~~-~~~va-------vN~~~v~~~~~l~dgDeVai~ 76 (82)
T PLN02799 20 DMTLELPAGSTTADCLAELVAKFPSLE-------EV--RS-CCVLA-------LNEEYTTESAALKDGDELAII 76 (82)
T ss_pred eEEEECCCCCcHHHHHHHHHHHChhHH-------HH--hh-CcEEE-------ECCEEcCCCcCcCCCCEEEEe
Confidence 344555567788888888765422100 00 01 11221 244557899999999999986
No 364
>KOG0096|consensus
Probab=65.48 E-value=8.5 Score=31.81 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=28.6
Q ss_pred CCCCcEEEEEecCCCCChH-H---HHHHh-cCCCEEEEeccccccHHH
Q psy7063 84 RVYLPCIYAYNKIDQISIE-E---VDRIA-RQPNSVVVSCNMKLNLDY 126 (188)
Q Consensus 84 ~~~kP~IlV~NKiDl~~~e-~---l~~l~-~~~~~vpISA~~~~gld~ 126 (188)
+.++|+++..||+|..+.. . +.... ..-..+.+||++.-|.+.
T Consensus 112 ~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~Nfek 159 (216)
T KOG0096|consen 112 RENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNFER 159 (216)
T ss_pred hcCCCeeeeccceeccccccccccceeeecccceeEEeeccccccccc
Confidence 4569999999999986443 1 11000 112468899999888766
No 365
>PRK07440 hypothetical protein; Provisional
Probab=65.28 E-value=4.9 Score=27.21 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=13.5
Q ss_pred CCccccCCCeEEEee
Q psy7063 173 LAHVMADEDVIQIVK 187 (188)
Q Consensus 173 ~d~~L~d~Dvv~iv~ 187 (188)
.++.|+|||.|+|++
T Consensus 51 ~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 51 EQTQVQPGDRLEIVT 65 (70)
T ss_pred CceecCCCCEEEEEE
Confidence 678999999999985
No 366
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=64.35 E-value=4.7 Score=26.56 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=15.8
Q ss_pred CCcccCCC----ccccCCCeEEEee
Q psy7063 167 SPQRVGLA----HVMADEDVIQIVK 187 (188)
Q Consensus 167 ~~qrvg~d----~~L~d~Dvv~iv~ 187 (188)
.|+-|.++ +.|+|||.|+|++
T Consensus 36 Ng~~v~~~~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 36 NGEIVPRSEWASTPLQDGDRIEIVT 60 (65)
T ss_pred CCEEcCHHHcCceecCCCCEEEEEE
Confidence 33445555 9999999999974
No 367
>KOG0090|consensus
Probab=64.29 E-value=18 Score=30.45 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=12.2
Q ss_pred CCcEEEEEecCCCC
Q psy7063 86 YLPCIYAYNKIDQI 99 (188)
Q Consensus 86 ~kP~IlV~NKiDl~ 99 (188)
..|+++++||-|+.
T Consensus 145 ~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 145 KPPVLIACNKQDLF 158 (238)
T ss_pred CCCEEEEecchhhh
Confidence 47899999999986
No 368
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=64.17 E-value=12 Score=33.01 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=22.6
Q ss_pred EEEEecCCCCChHHHHHH----h---cCCCEEEEeccccccHHHH
Q psy7063 90 IYAYNKIDQISIEEVDRI----A---RQPNSVVVSCNMKLNLDYL 127 (188)
Q Consensus 90 IlV~NKiDl~~~e~l~~l----~---~~~~~vpISA~~~~gld~L 127 (188)
++++||+|+++.+.++.+ . +-..++..|. .+..+..+
T Consensus 149 ~ivlNK~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~l 192 (323)
T COG0523 149 VIVLNKTDLVDAEELEALEARLRKLNPRARIIETSY-GDVDLAEL 192 (323)
T ss_pred EEEEecccCCCHHHHHHHHHHHHHhCCCCeEEEccc-cCCCHHHh
Confidence 889999999987654333 1 2234666665 44444433
No 369
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=64.04 E-value=14 Score=27.89 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=31.9
Q ss_pred cceeEEEccCC--ccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCc----hHHHHHHHh-cCCCCcEEEEEecC
Q psy7063 27 WSKGTFQSYTS--SINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNA----DELIDVINA-NRVYLPCIYAYNKI 96 (188)
Q Consensus 27 ~~~~~~~~~~~--~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~----dd~~~~l~~-~~~~kP~IlV~NKi 96 (188)
...++|++.|+ +.|..-. ..+. ..+..||++| +.+++. .+....... ......+++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~-~~~~--------~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHT-EITE--------EYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTS-HHHH--------HHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhH-HHHH--------HhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 34468888775 2232111 2222 2248899998 777652 222222211 22345699999995
No 370
>KOG0468|consensus
Probab=63.83 E-value=6.4 Score=38.33 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=26.7
Q ss_pred ccceeeEEE-EecCC------chHHHHHHHhcCCCCcEEEEEecCCCC
Q psy7063 59 KLTLKNVLF-REDCN------ADELIDVINANRVYLPCIYAYNKIDQI 99 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s------~dd~~~~l~~~~~~kP~IlV~NKiDl~ 99 (188)
+++-+|.++ ++|+- .+.+++.. .....|+.+|+||+|..
T Consensus 217 ~l~~sDgvVlvvDv~EGVmlntEr~ikha--iq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 217 SLRLSDGVVLVVDVAEGVMLNTERIIKHA--IQNRLPIVVVINKVDRL 262 (971)
T ss_pred HhhhcceEEEEEEcccCceeeHHHHHHHH--HhccCcEEEEEehhHHH
Confidence 367788886 77764 34444444 23468999999999964
No 371
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=62.91 E-value=81 Score=25.52 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=49.1
Q ss_pred hhhhcccceeeEEEEecCC-----chHHHHHHHh-cCCCCcEEEEEecCCCCChHHHHHHhcCCCEEEEeccccccHHHH
Q psy7063 54 DTLPSKLTLKNVLFREDCN-----ADELIDVINA-NRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLNLDYL 127 (188)
Q Consensus 54 ~~~~~~i~~ADvvl~~D~s-----~dd~~~~l~~-~~~~kP~IlV~NKiDl~~~e~l~~l~~~~~~vpISA~~~~gld~L 127 (188)
...+-+...||++++-++. ...+.+.+.. ....+|.|.++-+-+. .+-++++.+...++.. .+..|-+.|
T Consensus 92 ~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr--~P~v~~ik~~~~v~v~--lt~~NR~~i 167 (179)
T COG1618 92 PALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR--HPLVQRIKKLGGVYVF--LTPENRNRI 167 (179)
T ss_pred HHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC--ChHHHHhhhcCCEEEE--EccchhhHH
Confidence 3333456779999865432 3344444433 3467999999887654 2334555444444443 577788889
Q ss_pred HHHHHHhcc
Q psy7063 128 LDIIWLYLS 136 (188)
Q Consensus 128 ~~~I~~~L~ 136 (188)
...|...|+
T Consensus 168 ~~~Il~~L~ 176 (179)
T COG1618 168 LNEILSVLK 176 (179)
T ss_pred HHHHHHHhc
Confidence 988888775
No 372
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=62.78 E-value=13 Score=31.63 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=29.0
Q ss_pred hhhcccceeeEEE-EecCCchHHH--HHHHh--cCCC-CcEEEEEecCCCC
Q psy7063 55 TLPSKLTLKNVLF-REDCNADELI--DVINA--NRVY-LPCIYAYNKIDQI 99 (188)
Q Consensus 55 ~~~~~i~~ADvvl-~~D~s~dd~~--~~l~~--~~~~-kP~IlV~NKiDl~ 99 (188)
+..--+.++|++| ++|.|...+. +.+.. .... +++.+|+||+|-.
T Consensus 148 fgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 148 FGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred hccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 3445578899998 7898754322 11111 1234 8999999999964
No 373
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=62.78 E-value=5.9 Score=26.53 Aligned_cols=14 Identities=36% Similarity=0.430 Sum_probs=12.4
Q ss_pred CccccCCCeEEEee
Q psy7063 174 AHVMADEDVIQIVK 187 (188)
Q Consensus 174 d~~L~d~Dvv~iv~ 187 (188)
++.|+|||.|+|++
T Consensus 49 ~~~L~~gD~iEIv~ 62 (67)
T PRK07696 49 DTSVFDGDQIEIVT 62 (67)
T ss_pred ceecCCCCEEEEEE
Confidence 48899999999985
No 374
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=62.34 E-value=5.8 Score=27.77 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=16.0
Q ss_pred cccCCCccccCCCeEEEe
Q psy7063 169 QRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 169 qrvg~d~~L~d~Dvv~iv 186 (188)
.-+|.|+.|+|||.|-|+
T Consensus 61 ~~~~~~t~L~dGDeVa~~ 78 (84)
T COG1977 61 FLVGLDTPLKDGDEVAFF 78 (84)
T ss_pred eeccccccCCCCCEEEEe
Confidence 459999999999999885
No 375
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=62.25 E-value=7.4 Score=32.56 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.8
Q ss_pred CEEEEeccccccHHHHHHHHHHhcc
Q psy7063 112 NSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 112 ~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
++++.||.++.|++.|++.+.++++
T Consensus 242 pv~~gSa~~~~G~~~ll~~~~~~~p 266 (268)
T cd04170 242 PVLCGSALTNIGVRELLDALVHLLP 266 (268)
T ss_pred EEEEeeCCCCcCHHHHHHHHHHhCC
Confidence 4788999999999999999999875
No 376
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=62.02 E-value=6.3 Score=25.88 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.8
Q ss_pred CCCccccCCCeEEEee
Q psy7063 172 GLAHVMADEDVIQIVK 187 (188)
Q Consensus 172 g~d~~L~d~Dvv~iv~ 187 (188)
..++.|+|||.|+|++
T Consensus 44 ~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 44 WDDTILKEGDRIEIVT 59 (64)
T ss_pred cCceecCCCCEEEEEE
Confidence 5678999999999974
No 377
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=61.53 E-value=34 Score=30.82 Aligned_cols=103 Identities=16% Similarity=0.169 Sum_probs=51.2
Q ss_pred cceeEEEccCC--ccchhchhhHHHHHHhhhhhcccceeeEEE-EecC--CchH--HHHHHHhcCCCCcEEEEEecCCCC
Q psy7063 27 WSKGTFQSYTS--SINRHYYYKSARAYEADTLPSKLTLKNVLF-REDC--NADE--LIDVINANRVYLPCIYAYNKIDQI 99 (188)
Q Consensus 27 ~~~~~~~~~~~--~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~--s~dd--~~~~l~~~~~~kP~IlV~NKiDl~ 99 (188)
+|.++|..-|+ ..|-. ...|+. +.++...|+.| +.+- +..| +...+ .+..||+.+|-+|+|..
T Consensus 85 ~pnv~lWDlPG~gt~~f~-----~~~Yl~---~~~~~~yD~fiii~s~rf~~ndv~La~~i--~~~gK~fyfVRTKvD~D 154 (376)
T PF05049_consen 85 FPNVTLWDLPGIGTPNFP-----PEEYLK---EVKFYRYDFFIIISSERFTENDVQLAKEI--QRMGKKFYFVRTKVDSD 154 (376)
T ss_dssp -TTEEEEEE--GGGSS-------HHHHHH---HTTGGG-SEEEEEESSS--HHHHHHHHHH--HHTT-EEEEEE--HHHH
T ss_pred CCCCeEEeCCCCCCCCCC-----HHHHHH---HccccccCEEEEEeCCCCchhhHHHHHHH--HHcCCcEEEEEeccccc
Confidence 77788887775 22221 112222 24578889887 4442 2222 23333 23579999999999951
Q ss_pred ------------ChHH-HHH--------Hh----cCCCEEEEeccc--cccHHHHHHHHHHhcccce
Q psy7063 100 ------------SIEE-VDR--------IA----RQPNSVVVSCNM--KLNLDYLLDIIWLYLSLIR 139 (188)
Q Consensus 100 ------------~~e~-l~~--------l~----~~~~~vpISA~~--~~gld~L~~~I~~~L~~ir 139 (188)
+.+. ++. +. ..+.++.||... ..++..|.+.+.+.|+..+
T Consensus 155 l~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 155 LYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 1121 222 11 124688899865 4567778888888887554
No 378
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=60.72 E-value=7.4 Score=26.16 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=16.4
Q ss_pred CCcccCCCccccCCCeEEEee
Q psy7063 167 SPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 167 ~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
.|+-|..++.|+|||.|+|+.
T Consensus 45 Ng~iv~~~~~l~~gD~Veii~ 65 (70)
T PRK08364 45 NGKVALEDDPVKDGDYVEVIP 65 (70)
T ss_pred CCEECCCCcCcCCCCEEEEEc
Confidence 334456799999999999974
No 379
>KOG2486|consensus
Probab=60.18 E-value=9.4 Score=33.38 Aligned_cols=54 Identities=20% Similarity=0.129 Sum_probs=36.5
Q ss_pred cCCCCcEEEEEecCCCCChH---------HHHH-Hh---c--C---CCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 83 NRVYLPCIYAYNKIDQISIE---------EVDR-IA---R--Q---PNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 83 ~~~~kP~IlV~NKiDl~~~e---------~l~~-l~---~--~---~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
.+...|+-+|+||+|....- ++.. +. + | .+.+.+|+.++.|++.|+=.|+...+
T Consensus 245 ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~~ 316 (320)
T KOG2486|consen 245 GENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQLRG 316 (320)
T ss_pred hhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhhhhc
Confidence 34679999999999975321 1111 11 1 1 23566999999999999877776654
No 380
>KOG1707|consensus
Probab=60.13 E-value=19 Score=34.38 Aligned_cols=81 Identities=17% Similarity=0.305 Sum_probs=50.3
Q ss_pred ceeeEEE-EecCCchHHHHHH----H--hcCCCCcEEEEEecCCCCChHH-----HHHHh---cCCCEEEEeccccccHH
Q psy7063 61 TLKNVLF-REDCNADELIDVI----N--ANRVYLPCIYAYNKIDQISIEE-----VDRIA---RQPNSVVVSCNMKLNLD 125 (188)
Q Consensus 61 ~~ADvvl-~~D~s~dd~~~~l----~--~~~~~kP~IlV~NKiDl~~~e~-----l~~l~---~~~~~vpISA~~~~gld 125 (188)
..|||+. +.|.+...-.+.+ . ......|++.|+.|+|+....+ ..++. ..+..+++|.+. ..
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~---~~ 570 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKT---LS 570 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCC---CC
Confidence 6788886 7887744322211 1 1224689999999999864321 12222 345678888775 22
Q ss_pred HHHHHHHHhcccceeeeCCCC
Q psy7063 126 YLLDIIWLYLSLIRVYTKKPG 146 (188)
Q Consensus 126 ~L~~~I~~~L~~irVY~k~~g 146 (188)
+ ..+|..|-++.+||--++
T Consensus 571 s--~~lf~kL~~~A~~Ph~~~ 589 (625)
T KOG1707|consen 571 S--NELFIKLATMAQYPHIPR 589 (625)
T ss_pred C--chHHHHHHHhhhCCCccc
Confidence 2 567778888889987433
No 381
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=58.37 E-value=5.2 Score=26.03 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=16.1
Q ss_pred CCCcccCC--CccccCCCeEEE
Q psy7063 166 YSPQRVGL--AHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~--d~~L~d~Dvv~i 185 (188)
..|++++. -+.|.+||+|+|
T Consensus 46 vng~~l~~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 46 VNGQRLGPGEPVPLKDGDIIRF 67 (68)
T ss_dssp ETTEEESSTSEEEE-TTEEEEE
T ss_pred ECCEEcCCCCEEECCCCCEEEc
Confidence 46788887 899999999986
No 382
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=58.18 E-value=9 Score=25.70 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=35.2
Q ss_pred EEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 114 VVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 114 vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
..++...+..+.+|++.+....+.. .+. ....+.+-- +|+.|..++.|+|||.|.|+.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~------~~~---~~~~~~v~v-------Ng~~v~~~~~l~~gD~v~i~p 75 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGL------LEE---LLARVRIAV-------NGEYVRLDTPLKDGDEVAIIP 75 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchH------HHh---hhhcEEEEE-------CCeEcCCCcccCCCCEEEEeC
Confidence 4445545778888888877664321 111 112223322 444556899999999999974
No 383
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=56.94 E-value=89 Score=25.65 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=50.0
Q ss_pred ccceeeEEE-EecCCchH-----HHHHHHh--cC--CCCc----------EEEEEecCCCC--ChHHHHHHh-cCC-CEE
Q psy7063 59 KLTLKNVLF-REDCNADE-----LIDVINA--NR--VYLP----------CIYAYNKIDQI--SIEEVDRIA-RQP-NSV 114 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd-----~~~~l~~--~~--~~kP----------~IlV~NKiDl~--~~e~l~~l~-~~~-~~v 114 (188)
.+++||+++ +.|++..+ +.+.+.. .+ ...| -|-+.+++|+. +.+.+..+. ++. .--
T Consensus 74 ~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~ 153 (233)
T cd01896 74 VARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNA 153 (233)
T ss_pred hhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeE
Confidence 478999997 88987432 1222321 11 1122 23344577765 334444332 332 122
Q ss_pred EEeccccccHHHHHHHHHH---hcccceeeeCC
Q psy7063 115 VVSCNMKLNLDYLLDIIWL---YLSLIRVYTKK 144 (188)
Q Consensus 115 pISA~~~~gld~L~~~I~~---~L~~irVY~k~ 144 (188)
.++...+.++|+|.+.|+. +.+.+.|++|-
T Consensus 154 ~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~ 186 (233)
T cd01896 154 DVLIREDITVDDLIDVIEGNRVYIPCLYVYNKI 186 (233)
T ss_pred EEEEccCCCHHHHHHHHhCCceEeeEEEEEECc
Confidence 3477889999999999995 45777788864
No 384
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=56.73 E-value=6.7 Score=28.80 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.3
Q ss_pred CCCCCCcccCCCccccCCCeEEEe
Q psy7063 163 STKYSPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 163 ~~k~~~qrvg~d~~L~d~Dvv~iv 186 (188)
-++.+|+++...+.++.||+|+|.
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~ 58 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIR 58 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEE
Confidence 456789999999999999999985
No 385
>KOG1143|consensus
Probab=56.65 E-value=77 Score=29.21 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=15.0
Q ss_pred CCCcEEEEEecCCCCCh
Q psy7063 85 VYLPCIYAYNKIDQISI 101 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~~ 101 (188)
...|+++++.|+|+.+.
T Consensus 302 L~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 302 LNIPFFVLVTKMDLVDR 318 (591)
T ss_pred hCCCeEEEEEeeccccc
Confidence 56999999999999865
No 386
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.25 E-value=8.7 Score=28.03 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=16.1
Q ss_pred CcccCCCccccCCCeEEEe
Q psy7063 168 PQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 168 ~qrvg~d~~L~d~Dvv~iv 186 (188)
+..|..+..|+|||-|||.
T Consensus 56 ~k~~kl~~~l~dgDRVEIy 74 (99)
T COG2914 56 SKPVKLDDELHDGDRVEIY 74 (99)
T ss_pred ccccCccccccCCCEEEEe
Confidence 3567788899999999995
No 387
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=53.66 E-value=9.1 Score=25.33 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=11.0
Q ss_pred ccccCCCeEEEee
Q psy7063 175 HVMADEDVIQIVK 187 (188)
Q Consensus 175 ~~L~d~Dvv~iv~ 187 (188)
+.|+|||.|+|++
T Consensus 48 ~~L~~gD~ieIv~ 60 (65)
T PRK05863 48 TKLRDGARLEVVT 60 (65)
T ss_pred hhcCCCCEEEEEe
Confidence 3599999999985
No 388
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=53.42 E-value=13 Score=36.25 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=18.2
Q ss_pred hHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy7063 74 DELIDVINANRVYLPCIYAYNKIDQIS 100 (188)
Q Consensus 74 dd~~~~l~~~~~~kP~IlV~NKiDl~~ 100 (188)
+.+..++ .+...|.++++||+|...
T Consensus 118 Etv~rqa--~~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 118 ETVWRQA--DKYGVPRILFVNKMDRLG 142 (697)
T ss_pred HHHHHHH--hhcCCCeEEEEECccccc
Confidence 3444554 345799999999999874
No 389
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=51.24 E-value=31 Score=29.90 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=31.7
Q ss_pred cccceeeEEE-EecCC---chHHHHHHHh-cCCCCcEEEEEecCCCCChHHHHHH
Q psy7063 58 SKLTLKNVLF-REDCN---ADELIDVINA-NRVYLPCIYAYNKIDQISIEEVDRI 107 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s---~dd~~~~l~~-~~~~kP~IlV~NKiDl~~~e~l~~l 107 (188)
.++.+||+.| +.+.| .-|+...++. .....|..+|+||.+.-.. +++++
T Consensus 181 ~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~s-~ie~~ 234 (284)
T COG1149 181 ASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGDS-EIEEY 234 (284)
T ss_pred HhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCch-HHHHH
Confidence 3578889997 66655 3454444432 3357999999999976544 44444
No 390
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=50.85 E-value=13 Score=24.64 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.6
Q ss_pred CCCccccCCCeEEEee
Q psy7063 172 GLAHVMADEDVIQIVK 187 (188)
Q Consensus 172 g~d~~L~d~Dvv~iv~ 187 (188)
-.++.|.+||.|+|++
T Consensus 46 w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 46 WAQHIVQDGDQILLFQ 61 (66)
T ss_pred cCccccCCCCEEEEEE
Confidence 4677899999999985
No 391
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=50.00 E-value=13 Score=26.30 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=13.7
Q ss_pred cCCCccccCCCeEEEee
Q psy7063 171 VGLAHVMADEDVIQIVK 187 (188)
Q Consensus 171 vg~d~~L~d~Dvv~iv~ 187 (188)
-=.++.|++||.|+|++
T Consensus 63 ~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 63 EWQSTVLSSGDAISLFQ 79 (84)
T ss_pred HcCcccCCCCCEEEEEE
Confidence 33567899999999985
No 392
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=49.58 E-value=42 Score=28.64 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=41.3
Q ss_pred ccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCC-CCCcccCCCccccCCCeEEE
Q psy7063 120 MKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTK-YSPQRVGLAHVMADEDVIQI 185 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k-~~~qrvg~d~~L~d~Dvv~i 185 (188)
-|.-+.+|-+...+.+..--.||-..|..+ +|.|.=+.-+-.-|- .|+ .+.+|++||||.|
T Consensus 34 pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g-~~~~~ciSvNe~v~HgiP~----d~~vlk~GDiv~I 95 (255)
T COG0024 34 PGVTTLELDEIAEEFIREKGAYPAFLGYKG-FPFPTCISVNEVVAHGIPG----DKKVLKEGDIVKI 95 (255)
T ss_pred CCCCHHHHHHHHHHHHHHcCceehhccCcC-CCcceEeehhheeeecCCC----CCcccCCCCEEEE
Confidence 366667777777777766778887777665 666666555411111 233 8899999999998
No 393
>KOG0463|consensus
Probab=49.14 E-value=66 Score=29.62 Aligned_cols=74 Identities=24% Similarity=0.237 Sum_probs=44.7
Q ss_pred CCCcEEEEEecCCCCChH----HHH---HHh-----------------------cCC-----CEEEEeccccccHHHHHH
Q psy7063 85 VYLPCIYAYNKIDQISIE----EVD---RIA-----------------------RQP-----NSVVVSCNMKLNLDYLLD 129 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~~e----~l~---~l~-----------------------~~~-----~~vpISA~~~~gld~L~~ 129 (188)
...|+.+|++|||..+.. .+. ++. +|+ +++.+|-.+|.|++- +.
T Consensus 272 L~VPVfvVVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L-Lk 350 (641)
T KOG0463|consen 272 LHVPVFVVVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL-LK 350 (641)
T ss_pred hcCcEEEEEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH-HH
Confidence 469999999999997642 221 110 121 356689999999874 45
Q ss_pred HHHHhcccceeeeCCCCCCCCCCCcEEecc
Q psy7063 130 IIWLYLSLIRVYTKKPGAPPDFDDGLILRK 159 (188)
Q Consensus 130 ~I~~~L~~irVY~k~~g~~~d~~~p~il~~ 159 (188)
...++|..=+-|.......-..+|-+-+|-
T Consensus 351 mFLNlls~R~~~~E~~PAeFQIDD~Y~VpG 380 (641)
T KOG0463|consen 351 MFLNLLSLRRQLNENDPAEFQIDDIYWVPG 380 (641)
T ss_pred HHHhhcCcccccccCCCcceeecceEecCC
Confidence 566777766666643222223445555543
No 394
>KOG1769|consensus
Probab=46.84 E-value=16 Score=26.77 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=15.9
Q ss_pred CCCcccCCCc-----cccCCCeEEEee
Q psy7063 166 YSPQRVGLAH-----VMADEDVIQIVK 187 (188)
Q Consensus 166 ~~~qrvg~d~-----~L~d~Dvv~iv~ 187 (188)
|.|||+..+| .++|||+|+.+.
T Consensus 65 FdG~rI~~~~TP~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 65 FDGQRIRETHTPADLEMEDGDEIEVVQ 91 (99)
T ss_pred ECCcCcCCCCChhhhCCcCCcEEEEEe
Confidence 4566666554 689999999863
No 395
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=45.69 E-value=17 Score=30.78 Aligned_cols=25 Identities=16% Similarity=0.042 Sum_probs=22.1
Q ss_pred CEEEEeccccccHHHHHHHHHHhcc
Q psy7063 112 NSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 112 ~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
++++-||.++.|+..|++.|..+++
T Consensus 241 Pv~~gsa~~~~Gv~~Lld~i~~~~P 265 (267)
T cd04169 241 PVFFGSALNNFGVQELLDALVDLAP 265 (267)
T ss_pred EEEecccccCcCHHHHHHHHHHHCC
Confidence 3566899999999999999999875
No 396
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=44.83 E-value=19 Score=23.14 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=18.6
Q ss_pred CCCCCCccc-CCCccccCCCeEEE
Q psy7063 163 STKYSPQRV-GLAHVMADEDVIQI 185 (188)
Q Consensus 163 ~~k~~~qrv-g~d~~L~d~Dvv~i 185 (188)
.+...|+.+ ..+|.|..||+|+|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 445577887 77999999999986
No 397
>KOG0074|consensus
Probab=44.17 E-value=18 Score=28.71 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=42.7
Q ss_pred cceeeEEE-EecCCchH--------HHHHHHhcC-CCCcEEEEEecCCCCCh---HHHHHHh-----cC--CCEEEEecc
Q psy7063 60 LTLKNVLF-REDCNADE--------LIDVINANR-VYLPCIYAYNKIDQISI---EEVDRIA-----RQ--PNSVVVSCN 119 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd--------~~~~l~~~~-~~kP~IlV~NKiDl~~~---e~l~~l~-----~~--~~~vpISA~ 119 (188)
..+.|.+| ++|.+++. +.+.+++.+ ...|+++..||-|+... +++..-. +. -++=.+||.
T Consensus 83 yenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csal 162 (185)
T KOG0074|consen 83 YENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSAL 162 (185)
T ss_pred hhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccc
Confidence 56788888 88865432 222333322 35899999999998632 3332111 11 134457888
Q ss_pred ccccHHHHHHHHHH
Q psy7063 120 MKLNLDYLLDIIWL 133 (188)
Q Consensus 120 ~~~gld~L~~~I~~ 133 (188)
++.|...=.+.+..
T Consensus 163 s~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 163 SLEGSTDGSDWVQS 176 (185)
T ss_pred cccCccCcchhhhc
Confidence 88877554444443
No 398
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=43.53 E-value=20 Score=24.39 Aligned_cols=48 Identities=6% Similarity=0.003 Sum_probs=29.5
Q ss_pred ccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEe
Q psy7063 122 LNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 122 ~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv 186 (188)
..+.+|++.+.+..+. .-+....+.+- .+++.+..+..|+|||.|.|.
T Consensus 27 ~tv~~L~~~L~~~~p~----------l~~~~~~~~v~-------vn~~~v~~~~~l~dgDevai~ 74 (80)
T TIGR01682 27 TTVGELKEHLAKEGPE----------LAASRGQVMVA-------VNEEYVTDDALLNEGDEVAFI 74 (80)
T ss_pred cCHHHHHHHHHHhCch----------hhhhccceEEE-------ECCEEcCCCcCcCCCCEEEEe
Confidence 6778888888665431 00011122232 244556679999999999986
No 399
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=42.90 E-value=31 Score=23.02 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy7063 3 ILEKISEIEKEIARTQKNKV 22 (188)
Q Consensus 3 i~~~i~~~e~e~~~~~~~~~ 22 (188)
+-+||+-|.+||+|++-.++
T Consensus 30 l~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 30 LEERIALLQAEIERLKAELA 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999987654
No 400
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=42.17 E-value=42 Score=28.09 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=26.0
Q ss_pred cceeeEEE-EecCCchHHHHH-------H---HhcCCCCcEEEEEecCCCCChH
Q psy7063 60 LTLKNVLF-REDCNADELIDV-------I---NANRVYLPCIYAYNKIDQISIE 102 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~~~-------l---~~~~~~kP~IlV~NKiDl~~~e 102 (188)
.++++++| |.|+..+++.+. + ........+-+.+.|+|+.+++
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSED 127 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HH
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHH
Confidence 68899998 889863332221 1 1223467889999999998654
No 401
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=41.91 E-value=17 Score=24.08 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=36.6
Q ss_pred EeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 116 VSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 116 ISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
+....+..+.+|++.+....+... . .+ -+.+--+|+.+. . + +.++.|+|||.|.|+.
T Consensus 16 ~~~~~~~tv~~ll~~l~~~~p~~~--------~--~~-~~~v~vN~~~v~-~-~--~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 16 IEVPEGSTVRDLLEALAERYPELA--------L--RD-RVAVAVNGEIVP-D-D--GLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEESSTSBHHHHHHHHCHHTGGGH--------T--TT-TEEEEETTEEEG-G-G--TTTSBEETTEEEEEEE
T ss_pred EecCCCCcHHHHHHHHHhhccccc--------c--Cc-cEEEEECCEEcC-C-c--cCCcCcCCCCEEEEEC
Confidence 444567888999998887765444 1 22 333333344433 1 1 6699999999999974
No 402
>PRK09866 hypothetical protein; Provisional
Probab=41.34 E-value=34 Score=33.45 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcccceeEEEccCC
Q psy7063 2 GILEKISEIEKEIARTQKNKVLAYCWSKGTFQSYTS 37 (188)
Q Consensus 2 ~i~~~i~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~ 37 (188)
.|++||..|++++.++++.+ |.++++|+.+
T Consensus 50 ~i~~ri~~L~~~L~Kv~~~~------~~valvG~sg 79 (741)
T PRK09866 50 NIAERHAMLNNELRKISRLE------MVLAIVGTMK 79 (741)
T ss_pred HHHHHHHHHHHHHHHHhccc------eEEEEECCCC
Confidence 58999999999999999988 7788888775
No 403
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=40.67 E-value=54 Score=31.17 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=33.4
Q ss_pred CCCcEEEEEecCCCCChHHHHHHh----cCC-CEEEEe---ccccccHHHHHHHHHHhcc
Q psy7063 85 VYLPCIYAYNKIDQISIEEVDRIA----RQP-NSVVVS---CNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~~e~l~~l~----~~~-~~vpIS---A~~~~gld~L~~~I~~~L~ 136 (188)
...|+++++||-|.-++++++.+. +.. +++ +| |+-|.|--+|-+.+.+.+.
T Consensus 371 FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va-~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 371 FGVPVVVAINKFVTDTDAEIAALKELCEELGVEVA-LSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEE-EecccccCCcchHHHHHHHHHHHh
Confidence 469999999999987665554442 211 222 23 4557788777777776554
No 404
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=38.26 E-value=26 Score=29.76 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=21.9
Q ss_pred CEEEEeccccccHHHHHHHHHHhcc
Q psy7063 112 NSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 112 ~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
++++-||.++.|++.|++.|..+++
T Consensus 244 PV~~gSa~~~~Gi~~lld~i~~~~p 268 (270)
T cd01886 244 PVLCGSAFKNKGVQPLLDAVVDYLP 268 (270)
T ss_pred EEEeCcCCCCcCHHHHHHHHHHhcC
Confidence 3566799999999999999999875
No 405
>KOG0459|consensus
Probab=36.50 E-value=48 Score=30.61 Aligned_cols=74 Identities=18% Similarity=0.138 Sum_probs=41.2
Q ss_pred CCcEEEEEecCCCCC----hHHH----HHH----h-----cC--CCEEEEeccccccHHHHHH--HHHHhcccceeeeCC
Q psy7063 86 YLPCIYAYNKIDQIS----IEEV----DRI----A-----RQ--PNSVVVSCNMKLNLDYLLD--IIWLYLSLIRVYTKK 144 (188)
Q Consensus 86 ~kP~IlV~NKiDl~~----~e~l----~~l----~-----~~--~~~vpISA~~~~gld~L~~--~I~~~L~~irVY~k~ 144 (188)
-+..|+++||+|-+. .+.. +.+ . .+ ...+|+|..+|.++.+..+ .-|-..+..-.|-+.
T Consensus 217 v~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~ 296 (501)
T KOG0459|consen 217 VKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDE 296 (501)
T ss_pred cceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCccceehhc
Confidence 366788999999753 1211 111 1 12 2479999999999988775 222333333333332
Q ss_pred -CCCCCCCCCcEEecc
Q psy7063 145 -PGAPPDFDDGLILRK 159 (188)
Q Consensus 145 -~g~~~d~~~p~il~~ 159 (188)
|.-.-+.+-||.+|-
T Consensus 297 l~~~~R~~~GP~~~pI 312 (501)
T KOG0459|consen 297 LPHLERILNGPIRCPV 312 (501)
T ss_pred cCcccccCCCCEEeeh
Confidence 111112556787776
No 406
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=36.24 E-value=72 Score=22.92 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.8
Q ss_pred CCcccCCCccccCCCeEEE
Q psy7063 167 SPQRVGLAHVMADEDVIQI 185 (188)
Q Consensus 167 ~~qrvg~d~~L~d~Dvv~i 185 (188)
.|+|+|.=|.|+||-+|-|
T Consensus 72 ~G~~~G~aYrl~~Gk~I~V 90 (92)
T PF09919_consen 72 SGERLGTAYRLKDGKLIYV 90 (92)
T ss_pred CCeECeEEEEcCCceEEEe
Confidence 6799999999999988754
No 407
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=35.08 E-value=43 Score=25.61 Aligned_cols=9 Identities=44% Similarity=0.357 Sum_probs=5.7
Q ss_pred EEEEEecCC
Q psy7063 89 CIYAYNKID 97 (188)
Q Consensus 89 ~IlV~NKiD 97 (188)
-++++||+|
T Consensus 140 ~~~~~~k~~ 148 (148)
T cd03114 140 DIVVVNKAD 148 (148)
T ss_pred CEEEEeCCC
Confidence 366677766
No 408
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=35.07 E-value=85 Score=19.77 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcc---cceeEEEc
Q psy7063 2 GILEKISEIEKEIARTQKNKVLAYC---WSKGTFQS 34 (188)
Q Consensus 2 ~i~~~i~~~e~e~~~~~~~~~~~~~---~~~~~~~~ 34 (188)
.+++++..+|.++.+.|.+=....+ +|.+.-+|
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yKKa~lFp~G~~VG 38 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYKKAELFPNGRSVG 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhhh
Confidence 4688999999999999988776666 77776555
No 409
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=35.01 E-value=46 Score=21.37 Aligned_cols=24 Identities=33% Similarity=0.345 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcc
Q psy7063 3 ILEKISEIEKEIARTQKNKVLAYC 26 (188)
Q Consensus 3 i~~~i~~~e~e~~~~~~~~~~~~~ 26 (188)
+.+++.+|+++|+..++-++...+
T Consensus 41 l~~~~~~i~~~i~~L~~~~~~L~~ 64 (65)
T PF09278_consen 41 LEEKLEEIEEQIAELQALRAQLEH 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999988776543
No 410
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=34.75 E-value=51 Score=18.05 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy7063 5 EKISEIEKEIARTQKNK 21 (188)
Q Consensus 5 ~~i~~~e~e~~~~~~~~ 21 (188)
.+++.-|+||+++||.-
T Consensus 5 akla~YqaeLa~vqk~n 21 (25)
T PF06696_consen 5 AKLAQYQAELARVQKAN 21 (25)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46778899999999854
No 411
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=33.97 E-value=35 Score=30.02 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=13.7
Q ss_pred EEEEEecCCCCChHHHH
Q psy7063 89 CIYAYNKIDQISIEEVD 105 (188)
Q Consensus 89 ~IlV~NKiDl~~~e~l~ 105 (188)
=++++||+|+.+.++++
T Consensus 176 D~IvlnK~Dl~~~~~l~ 192 (341)
T TIGR02475 176 DLVILNKADLLDAAGLA 192 (341)
T ss_pred CEEEEeccccCCHHHHH
Confidence 48899999999876654
No 412
>KOG3349|consensus
Probab=30.72 E-value=48 Score=26.46 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=22.8
Q ss_pred cceeeEEE-EecCCchHHHHHHHhcCCCCcEEEEEecCCCCCh
Q psy7063 60 LTLKNVLF-REDCNADELIDVINANRVYLPCIYAYNKIDQISI 101 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~~~l~~~~~~kP~IlV~NKiDl~~~ 101 (188)
|++||++| -.-+ ..+.+.+ +..||.|+|+|-. +.++
T Consensus 78 I~~AdlVIsHAGa--GS~letL---~l~KPlivVvNd~-LMDN 114 (170)
T KOG3349|consen 78 IRSADLVISHAGA--GSCLETL---RLGKPLIVVVNDS-LMDN 114 (170)
T ss_pred HhhccEEEecCCc--chHHHHH---HcCCCEEEEeChH-hhhh
Confidence 78888887 3322 2233444 4679999999963 4444
No 413
>COG5417 Uncharacterized small protein [Function unknown]
Probab=30.56 E-value=30 Score=24.23 Aligned_cols=52 Identities=23% Similarity=0.455 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcccceeeeCCCCCCC-CCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEe
Q psy7063 124 LDYLLDIIWLYLSLIRVYTKKPGAPP-DFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 124 ld~L~~~I~~~L~~irVY~k~~g~~~-d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv 186 (188)
+..|...+|+.+.+ -|++..|..- -..++-++ +.++| =.||...|||+++|.
T Consensus 29 ikklIdivwe~~ki--s~~~reg~~Ikv~nKa~ll---sgd~k------L~d~~IadGD~LeiL 81 (81)
T COG5417 29 IKKLIDIVWESLKI--SIFDREGTQIKVMNKAQLL---SGDDK------LIDYQIADGDILEIL 81 (81)
T ss_pred HHHHHHHHHHHhhc--cccccCCCEEEEeccceEe---cCCce------EEeccccCCCEEEeC
Confidence 35677888887652 3344333220 01112222 22333 358999999999983
No 414
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=30.08 E-value=3.4e+02 Score=23.39 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhhhhhhcccceeEEEccC-C---cc---ch------hchhhHHHHHHhhhhhcccc-eeeEEEEecCC
Q psy7063 7 ISEIEKEIARTQKNKVLAYCWSKGTFQSYT-S---SI---NR------HYYYKSARAYEADTLPSKLT-LKNVLFREDCN 72 (188)
Q Consensus 7 i~~~e~e~~~~~~~~~~~~~~~~~~~~~~~-~---~l---n~------~l~~~~~~a~~~~~~~~~i~-~ADvvl~~D~s 72 (188)
...|+++++++|+...-.-.+.+|+|+... . ++ +| +.-+.+++..++-+...++. ..+-++..|+.
T Consensus 73 ~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaD 152 (269)
T PF03452_consen 73 LKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDAD 152 (269)
T ss_pred HHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecC
Confidence 467899999999765555557788877544 2 22 22 34456666666666667777 66666644433
Q ss_pred ----chHHHHHH
Q psy7063 73 ----ADELIDVI 80 (188)
Q Consensus 73 ----~dd~~~~l 80 (188)
.+++++.+
T Consensus 153 Iv~~P~~lI~dl 164 (269)
T PF03452_consen 153 IVETPPTLIQDL 164 (269)
T ss_pred cccCChHHHHHH
Confidence 44555444
No 415
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=29.97 E-value=1.9e+02 Score=25.22 Aligned_cols=40 Identities=10% Similarity=-0.084 Sum_probs=23.8
Q ss_pred CcEEEEEecCCCCCh-HH-HHHHhcC-CCEEEEeccccccHHHHH
Q psy7063 87 LPCIYAYNKIDQISI-EE-VDRIARQ-PNSVVVSCNMKLNLDYLL 128 (188)
Q Consensus 87 kP~IlV~NKiDl~~~-e~-l~~l~~~-~~~vpISA~~~~gld~L~ 128 (188)
.+.-+|+||.|-... .. +.....+ -++.++| +|+++++|.
T Consensus 260 ~~~giIlTKlD~t~~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 260 GLTGIILTKLDGTAKGGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCEEEEECCCCCCCccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 356789999996543 22 3322222 2366677 788887754
No 416
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=29.39 E-value=49 Score=22.59 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=15.1
Q ss_pred cccCCCccccCCCeEEEe
Q psy7063 169 QRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 169 qrvg~d~~L~d~Dvv~iv 186 (188)
.-++.|..|+|||.|-|+
T Consensus 58 ~~~~~~~~l~dgDeVai~ 75 (81)
T PRK11130 58 TLVSFDHPLTDGDEVAFF 75 (81)
T ss_pred EEcCCCCCCCCCCEEEEe
Confidence 345899999999999885
No 417
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=29.10 E-value=79 Score=27.95 Aligned_cols=40 Identities=10% Similarity=0.232 Sum_probs=31.0
Q ss_pred ccceeeEEEEecCC----------chHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy7063 59 KLTLKNVLFREDCN----------ADELIDVINANRVYLPCIYAYNKIDQIS 100 (188)
Q Consensus 59 ~i~~ADvvl~~D~s----------~dd~~~~l~~~~~~kP~IlV~NKiDl~~ 100 (188)
+|++||++++...+ .+++.+.+.. ...|.+++.|....+.
T Consensus 186 AI~~AD~IviGPgSl~TSIlP~Lllp~I~eaLr~--~~ap~i~v~n~~~~~g 235 (323)
T COG0391 186 AIKEADLIVIGPGSLFTSILPILLLPGIAEALRE--TVAPIVYVCNLMTQAG 235 (323)
T ss_pred HHHhCCEEEEcCCccHhhhchhhchhHHHHHHHh--CCCCEEEeccCCCCCC
Confidence 59999999877533 3566677754 6789999999998765
No 418
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=28.88 E-value=25 Score=21.26 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=17.2
Q ss_pred CCCCCCcccC-CCccccCCCeE
Q psy7063 163 STKYSPQRVG-LAHVMADEDVI 183 (188)
Q Consensus 163 ~~k~~~qrvg-~d~~L~d~Dvv 183 (188)
.++..|+.+- .+|.+..||+|
T Consensus 27 ~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 27 RVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp TEEETTEEESSTTSBESTTEEE
T ss_pred EEEECCEEEcCCCCCCCCcCCC
Confidence 4566788888 89999999986
No 419
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=28.45 E-value=53 Score=30.82 Aligned_cols=27 Identities=11% Similarity=0.043 Sum_probs=23.8
Q ss_pred CEEEEeccccccHHHHHHHHHHhcccc
Q psy7063 112 NSVVVSCNMKLNLDYLLDIIWLYLSLI 138 (188)
Q Consensus 112 ~~vpISA~~~~gld~L~~~I~~~L~~i 138 (188)
++++-||.++.|++.|++.|.++++--
T Consensus 251 PV~~GSA~~n~Gv~~LLd~i~~~~PsP 277 (527)
T TIGR00503 251 PVFFGTALGNFGVDHFLDGLLQWAPKP 277 (527)
T ss_pred EEEEeecccCccHHHHHHHHHHHCCCC
Confidence 467789999999999999999999844
No 420
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=28.27 E-value=58 Score=25.73 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=15.2
Q ss_pred CEEEEeccccccHHHHHHHHHHh
Q psy7063 112 NSVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 112 ~~vpISA~~~~gld~L~~~I~~~ 134 (188)
.++.+.-.+|.|-..|.+.+...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45666666777777777776654
No 421
>KOG2776|consensus
Probab=27.47 E-value=44 Score=30.13 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=21.3
Q ss_pred CCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEe
Q psy7063 151 FDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 151 ~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv 186 (188)
+|..+=+..= .+-|.|..=..||.|++||+|+|-
T Consensus 79 fPT~Isvnnc--v~h~sPlksd~~~~Lk~GDvVKId 112 (398)
T KOG2776|consen 79 FPTSISVNNC--VCHFSPLKSDADYTLKEGDVVKID 112 (398)
T ss_pred ccceecccce--eeccCcCCCCCcccccCCCEEEEE
Confidence 5555544321 233455444449999999999983
No 422
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=27.36 E-value=42 Score=21.95 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhhhhhhcc
Q psy7063 6 KISEIEKEIARTQKNKVLAYC 26 (188)
Q Consensus 6 ~i~~~e~e~~~~~~~~~~~~~ 26 (188)
||.+||.++.++.-.=+|.+.
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~ 21 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKK 21 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 678888888887766555543
No 423
>smart00363 S4 S4 RNA-binding domain.
Probab=27.09 E-value=52 Score=19.59 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=17.1
Q ss_pred CCCCCccc-CCCccccCCCeEEEe
Q psy7063 164 TKYSPQRV-GLAHVMADEDVIQIV 186 (188)
Q Consensus 164 ~k~~~qrv-g~d~~L~d~Dvv~iv 186 (188)
....|+++ -.++.|..||+|++.
T Consensus 28 i~vng~~~~~~~~~l~~gd~i~~~ 51 (60)
T smart00363 28 VKVNGKKVTKPSYIVKPGDVISVR 51 (60)
T ss_pred EEECCEEecCCCeEeCCCCEEEEc
Confidence 34466777 778889999988763
No 424
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=26.97 E-value=80 Score=20.86 Aligned_cols=18 Identities=11% Similarity=0.418 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHhh
Q psy7063 2 GILEKISEIEKEIARTQK 19 (188)
Q Consensus 2 ~i~~~i~~~e~e~~~~~~ 19 (188)
+|=+|++.||+++...++
T Consensus 29 tiEqRLa~LE~rL~~ae~ 46 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQ 46 (60)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 688999999999988775
No 425
>KOG0077|consensus
Probab=26.84 E-value=71 Score=25.98 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=14.1
Q ss_pred CCCcEEEEEecCCCCC
Q psy7063 85 VYLPCIYAYNKIDQIS 100 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~ 100 (188)
...|+++..||+|...
T Consensus 120 a~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 120 ATVPFLILGNKIDIPY 135 (193)
T ss_pred hcCcceeecccccCCC
Confidence 5799999999999873
No 426
>PRK14907 rplD 50S ribosomal protein L4; Provisional
Probab=26.56 E-value=4.4e+02 Score=23.07 Aligned_cols=87 Identities=14% Similarity=0.183 Sum_probs=43.5
Q ss_pred eEEEccCC------ccchhchhhHHHHHHhhhhhcccceeeEEEEecCCc-----hHHHHHHHhcCCC--CcEEEEEecC
Q psy7063 30 GTFQSYTS------SINRHYYYKSARAYEADTLPSKLTLKNVLFREDCNA-----DELIDVINANRVY--LPCIYAYNKI 96 (188)
Q Consensus 30 ~~~~~~~~------~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl~~D~s~-----dd~~~~l~~~~~~--kP~IlV~NKi 96 (188)
|..|||.. .||+++-+-++ +..|+. .+.+ +++++.|... -++.+.+.....+ ...++|. .
T Consensus 175 GvaFGPkP~RdY~~KLNKKvRrLAL---rsALS~-ka~~-~LvVVd~~~le~~KTK~l~~~L~~lgl~~~k~vLiV~--~ 247 (295)
T PRK14907 175 GRAFGPTPERNYKLKVNKKVRFNAF---VSALTL-LANS-KAVLVDDFKLEKISTKDLIKKLTKLKINNLKHILIVS--N 247 (295)
T ss_pred eeecCCCCccchhhhcCHHHHHHHH---HHHHHH-hccC-CEEEEecccCCCCCHHHHHHHHHHcCcccCCceEEEE--C
Confidence 56788763 27777655544 455555 3444 6666655432 2555555443222 3455555 1
Q ss_pred CCCChHHHHH-HhcCCCEEEEeccccccHHHHH
Q psy7063 97 DQISIEEVDR-IARQPNSVVVSCNMKLNLDYLL 128 (188)
Q Consensus 97 Dl~~~e~l~~-l~~~~~~vpISA~~~~gld~L~ 128 (188)
| +++.. ..+.+.+ -+-...+.|+.+|+
T Consensus 248 d----enl~lSaRNLp~V-~Vl~~~~LNVydLL 275 (295)
T PRK14907 248 D----ENIFKSARNLQNV-IVVKPTSLSVELLI 275 (295)
T ss_pred C----chHHHHHhCCCCc-eEeecCCccHHHHh
Confidence 2 23321 2234432 22334577776665
No 427
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=26.20 E-value=52 Score=24.57 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHh
Q psy7063 5 EKISEIEKEIARTQ 18 (188)
Q Consensus 5 ~~i~~~e~e~~~~~ 18 (188)
-||.|+|.|+.+++
T Consensus 7 lrIkdLeselsk~K 20 (111)
T PF12001_consen 7 LRIKDLESELSKMK 20 (111)
T ss_pred HHHHHHHHHHHHhH
Confidence 48999999999988
No 428
>PRK00295 hypothetical protein; Provisional
Probab=26.19 E-value=80 Score=21.23 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHHHHHHHhh
Q psy7063 1 MGILEKISEIEKEIARTQK 19 (188)
Q Consensus 1 ~~i~~~i~~~e~e~~~~~~ 19 (188)
||+-+||.+||..++..+.
T Consensus 1 ~~~e~Ri~~LE~kla~qE~ 19 (68)
T PRK00295 1 MSLEERVTELESRQAFQDD 19 (68)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 7888999999998887665
No 429
>KOG3883|consensus
Probab=25.70 E-value=1.3e+02 Score=24.36 Aligned_cols=52 Identities=21% Similarity=0.107 Sum_probs=31.1
Q ss_pred CCCCcEEEEEecCCCCChHHH-----HHHh-cC-CCEEEEeccccccHHHHHHHHHHhc
Q psy7063 84 RVYLPCIYAYNKIDQISIEEV-----DRIA-RQ-PNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 84 ~~~kP~IlV~NKiDl~~~e~l-----~~l~-~~-~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
+...|+++.+||+|+..+.+. ..+. +. -....++|.....+-+-...+...+
T Consensus 116 KKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl 174 (198)
T KOG3883|consen 116 KKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRL 174 (198)
T ss_pred cccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhc
Confidence 356899999999999744322 1121 11 1346688887766655444444443
No 430
>KOG0448|consensus
Probab=25.50 E-value=1.9e+02 Score=28.40 Aligned_cols=15 Identities=27% Similarity=0.173 Sum_probs=10.1
Q ss_pred CCcE-EEEEecCCCCC
Q psy7063 86 YLPC-IYAYNKIDQIS 100 (188)
Q Consensus 86 ~kP~-IlV~NKiDl~~ 100 (188)
.||- +++.||.|...
T Consensus 260 ~KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 260 EKPNIFILNNKWDASA 275 (749)
T ss_pred cCCcEEEEechhhhhc
Confidence 3664 55677889863
No 431
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=25.46 E-value=96 Score=20.56 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcc
Q psy7063 3 ILEKISEIEKEIARTQKNKVLAYC 26 (188)
Q Consensus 3 i~~~i~~~e~e~~~~~~~~~~~~~ 26 (188)
++++|++|++.++..+..-+..+.
T Consensus 19 LK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 19 LKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999998876555544
No 432
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=25.06 E-value=43 Score=23.25 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=35.2
Q ss_pred EEEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
.+.+......-+..|++++.+.-+ -+ ....-++-. |+. ..+.+--.+|-++|||+|..+.
T Consensus 23 ~~~~~v~~~~~l~~l~~~y~~~~g----------i~--~~~~rf~f~-G~~--L~~~~T~~~l~m~d~d~I~v~l 82 (87)
T cd01763 23 EVFFKIKRSTPLKKLMEAYCQRQG----------LS--MNSVRFLFD-GQR--IRDNQTPDDLGMEDGDEIEVML 82 (87)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHhC----------CC--ccceEEEEC-CeE--CCCCCCHHHcCCCCCCEEEEEE
Confidence 455566666777888888887754 11 222223322 321 1122344678899999998864
No 433
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=23.62 E-value=2.6e+02 Score=19.84 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=24.6
Q ss_pred ccceeeEEE-EecC---CchHHHHHHHhcCCCCcEEEEEecCCC
Q psy7063 59 KLTLKNVLF-REDC---NADELIDVINANRVYLPCIYAYNKIDQ 98 (188)
Q Consensus 59 ~i~~ADvvl-~~D~---s~dd~~~~l~~~~~~kP~IlV~NKiDl 98 (188)
.|.+||++| ..|. +..-..+.=......||++++.+....
T Consensus 58 ~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 58 GIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred HHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 499999998 5554 222233322222356999999887664
No 434
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=23.45 E-value=45 Score=22.05 Aligned_cols=13 Identities=23% Similarity=0.112 Sum_probs=8.3
Q ss_pred CCccccCCCeEEE
Q psy7063 173 LAHVMADEDVIQI 185 (188)
Q Consensus 173 ~d~~L~d~Dvv~i 185 (188)
.+|.|+|||.|.+
T Consensus 55 ~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 55 GSYKLKDGDKITW 67 (68)
T ss_dssp CC-B--TTEEEEE
T ss_pred ceeEeCCCCEEEe
Confidence 5789999999975
No 435
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=23.10 E-value=1.2e+02 Score=23.30 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=32.7
Q ss_pred ceeEEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCc---hH---HHHHHHhcCCCCcEEEEEecCCCCC
Q psy7063 28 SKGTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNA---DE---LIDVINANRVYLPCIYAYNKIDQIS 100 (188)
Q Consensus 28 ~~~~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~---dd---~~~~l~~~~~~kP~IlV~NKiDl~~ 100 (188)
....++..+..++.. .. ..+..||.++ +...+. .+ ..+.+. ....|..+|+||+|...
T Consensus 93 ~d~viiDtpp~~~~~----~~---------~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~--~~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 93 AELIIIDGPPGIGCP----VI---------ASLTGADAALLVTEPTPSGLHDLERAVELVR--HFGIPVGVVINKYDLND 157 (179)
T ss_pred CCEEEEECcCCCcHH----HH---------HHHHcCCEEEEEecCCcccHHHHHHHHHHHH--HcCCCEEEEEeCCCCCc
Confidence 345677666545541 11 1256788887 555442 22 223332 23567899999999753
No 436
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=22.63 E-value=1.4e+02 Score=28.01 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.6
Q ss_pred CCCcEEEEEecCCCCCh
Q psy7063 85 VYLPCIYAYNKIDQISI 101 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~~ 101 (188)
...|++..+||.|....
T Consensus 132 R~iPI~TFiNKlDR~~r 148 (528)
T COG4108 132 RDIPIFTFINKLDREGR 148 (528)
T ss_pred cCCceEEEeeccccccC
Confidence 47999999999998743
No 437
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=22.43 E-value=96 Score=24.29 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcc
Q psy7063 3 ILEKISEIEKEIARTQKNKVLAYC 26 (188)
Q Consensus 3 i~~~i~~~e~e~~~~~~~~~~~~~ 26 (188)
++++++.+|+|++..++.+...+.
T Consensus 71 l~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999998877765
No 438
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=22.36 E-value=72 Score=27.16 Aligned_cols=18 Identities=39% Similarity=0.628 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy7063 3 ILEKISEIEKEIARTQKN 20 (188)
Q Consensus 3 i~~~i~~~e~e~~~~~~~ 20 (188)
-++||+.||.|+++.+..
T Consensus 120 AlqKIsALEdELs~LRaQ 137 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQ 137 (253)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 368999999999987653
No 439
>PF05061 Pox_A11: Poxvirus A11 Protein; InterPro: IPR007755 This is a family of conserved Chordopoxvirinae A11 family proteins. A conserved region spans the entire protein in the majority of family members.
Probab=22.14 E-value=78 Score=27.70 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhcc
Q psy7063 5 EKISEIEKEIARTQKNKVLAYC 26 (188)
Q Consensus 5 ~~i~~~e~e~~~~~~~~~~~~~ 26 (188)
+||+-||.|.+..++.++++..
T Consensus 147 kriklLe~Ev~eLk~k~~~~~s 168 (314)
T PF05061_consen 147 KRIKLLEDEVKELKKKQNTSKS 168 (314)
T ss_pred HHHHHHHHHHHHHHhccccccc
Confidence 6899999999999998884443
No 440
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=22.14 E-value=1.8e+02 Score=27.83 Aligned_cols=68 Identities=13% Similarity=0.282 Sum_probs=43.3
Q ss_pred hhhhhhhcccceeEEEccC-C-----ccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCch--HHHHHHHh-cCCCC
Q psy7063 18 QKNKVLAYCWSKGTFQSYT-S-----SINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNAD--ELIDVINA-NRVYL 87 (188)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~-~-----~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~d--d~~~~l~~-~~~~k 87 (188)
|..++..++ +-.+.+++ . ..|+++..+..+ -..+-.|+++ ..|||.. +..+.+.. ++...
T Consensus 466 ~~~la~~~~--~pVmlDfyAdWCvtCK~~e~~tfsd~~--------v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 466 DQALAEAKA--KPVMLDFYADWCVTCKENEKYTFSDPQ--------VQQALQDVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred HHHHHhCCC--CcEEEeeehhHHHHhHhhhhhccCcHH--------HHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 333444444 67788777 3 488887776543 1234567776 7999843 44555543 45689
Q ss_pred cEEEEEec
Q psy7063 88 PCIYAYNK 95 (188)
Q Consensus 88 P~IlV~NK 95 (188)
|.+++++.
T Consensus 536 P~~~ff~~ 543 (569)
T COG4232 536 PTYLFFGP 543 (569)
T ss_pred CEEEEECC
Confidence 99999986
No 441
>KOG3478|consensus
Probab=22.00 E-value=97 Score=23.29 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q psy7063 2 GILEKISEIEKEIARTQKN 20 (188)
Q Consensus 2 ~i~~~i~~~e~e~~~~~~~ 20 (188)
.+..||.+|.+|++|...+
T Consensus 73 nV~kRlefI~~Eikr~e~~ 91 (120)
T KOG3478|consen 73 NVGKRLEFISKEIKRLENQ 91 (120)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3567999999999998875
No 442
>PF10948 DUF2635: Protein of unknown function (DUF2635); InterPro: IPR024400 This family consists of uncharacterised proteins found in bacteria and bacteriophages. It includes protein Gp38 from Enterobacteria phage Mu.
Probab=21.53 E-value=55 Score=20.64 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=8.7
Q ss_pred cccCCCeEEEe
Q psy7063 176 VMADEDVIQIV 186 (188)
Q Consensus 176 ~L~d~Dvv~iv 186 (188)
.|.||||+..-
T Consensus 34 Rl~dGDV~~v~ 44 (47)
T PF10948_consen 34 RLADGDVVEVT 44 (47)
T ss_pred hhhcCCEEEec
Confidence 47899998764
No 443
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=21.47 E-value=35 Score=26.70 Aligned_cols=13 Identities=46% Similarity=0.557 Sum_probs=10.2
Q ss_pred EEEEecCCCCChH
Q psy7063 90 IYAYNKIDQISIE 102 (188)
Q Consensus 90 IlV~NKiDl~~~e 102 (188)
++|+||+|+.+.+
T Consensus 145 vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 145 VIVLNKIDLVSDE 157 (178)
T ss_dssp EEEEE-GGGHHHH
T ss_pred EEEEeccccCChh
Confidence 8899999998665
No 444
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=20.87 E-value=3e+02 Score=19.04 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=30.4
Q ss_pred ccccHHHHHHHHHHhcccc---eeeeCCCCCCCCCCCcEEeccC-------CCCCCCCCcccC
Q psy7063 120 MKLNLDYLLDIIWLYLSLI---RVYTKKPGAPPDFDDGLILRKG-------GTSTKYSPQRVG 172 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~~i---rVY~k~~g~~~d~~~p~il~~g-------g~~~k~~~qrvg 172 (188)
+...-+++...+.+.|.-- -..+|.+|+. +++|.. |.+. .+|||
T Consensus 18 s~~s~dev~~~v~~Al~~~~~~l~LtD~kGr~------~lVp~~~iaYVeiG~~~---~r~VG 71 (74)
T PF11305_consen 18 SDQSADEVEAAVTDALADGSGVLTLTDEKGRR------VLVPAASIAYVEIGSEE---KRRVG 71 (74)
T ss_pred cCCCHHHHHHHHHHHHhCCCceEEEEeCCCCE------EEEECCcEEEEEEcCCC---CCccC
Confidence 4456688888888877644 5566888875 788887 6542 35677
No 445
>KOG1673|consensus
Probab=20.84 E-value=4.6e+02 Score=21.24 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=29.3
Q ss_pred CCcEEEEEecCCCC---ChH---HHHHH---h-c--CCCEEEEeccccccHHHHHHHHHH
Q psy7063 86 YLPCIYAYNKIDQI---SIE---EVDRI---A-R--QPNSVVVSCNMKLNLDYLLDIIWL 133 (188)
Q Consensus 86 ~kP~IlV~NKiDl~---~~e---~l~~l---~-~--~~~~vpISA~~~~gld~L~~~I~~ 133 (188)
.+| |+|..|-|.. +.+ ++..- + . ....+++||.+..|+..+-..+..
T Consensus 125 AiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlA 183 (205)
T KOG1673|consen 125 AIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLA 183 (205)
T ss_pred cce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHH
Confidence 456 7889998853 222 22111 1 1 235788999999999887665543
No 446
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.67 E-value=1.5e+02 Score=20.76 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=20.2
Q ss_pred cccceeeEEE-EecCCchHHHHHHHh--cCCCCcEEEE
Q psy7063 58 SKLTLKNVLF-REDCNADELIDVINA--NRVYLPCIYA 92 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~~~~l~~--~~~~kP~IlV 92 (188)
..+..||+|+ +.|.-.-+....+.. .+..+|++++
T Consensus 44 ~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 44 SKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 3588999998 677543222222211 3356887776
No 447
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=20.55 E-value=76 Score=19.01 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=17.1
Q ss_pred CCCcccCCCccccCCCeEEEee
Q psy7063 166 YSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 166 ~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
..|+-+..++.+.+++.|++++
T Consensus 39 vng~~~dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 39 VNGELVDLSRPLEEDCELEIIT 60 (61)
T ss_pred ECCEEecCCcCcCCCCEEEEEe
Confidence 3566678888888888888874
Done!