Query psy7063
Match_columns 188
No_of_seqs 264 out of 1763
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 17:10:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a9a_A Ribosome-interacting GT 100.0 1.2E-32 4.1E-37 242.6 15.6 105 84-188 247-376 (376)
2 2eki_A DRG 1, developmentally- 99.9 1.9E-22 6.6E-27 144.5 4.4 57 132-188 6-87 (93)
3 1wxq_A GTP-binding protein; st 99.7 1.1E-17 3.6E-22 148.0 3.3 117 70-188 197-395 (397)
4 2dby_A GTP-binding protein; GD 99.4 4.7E-13 1.6E-17 117.3 7.9 112 70-186 184-365 (368)
5 1jal_A YCHF protein; nucleotid 99.4 1.6E-12 5.5E-17 113.8 8.9 112 70-186 182-360 (363)
6 2ohf_A Protein OLA1, GTP-bindi 99.2 1.2E-11 4.1E-16 109.4 5.2 111 70-185 205-385 (396)
7 2qtf_A Protein HFLX, GTP-bindi 99.1 4.1E-10 1.4E-14 98.3 10.9 133 3-137 149-354 (364)
8 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 8.6E-11 2.9E-15 103.8 4.6 111 70-185 207-387 (392)
9 3gee_A MNME, tRNA modification 99.0 3.1E-09 1.1E-13 95.8 11.9 133 3-136 206-397 (476)
10 3geh_A MNME, tRNA modification 98.8 2.1E-08 7.1E-13 90.1 10.7 135 2-137 196-384 (462)
11 1xzp_A Probable tRNA modificat 98.8 2.2E-08 7.7E-13 90.3 9.2 131 3-136 216-404 (482)
12 1wf3_A GTP-binding protein; GT 98.7 3.8E-08 1.3E-12 83.4 7.8 106 29-137 56-173 (301)
13 3iev_A GTP-binding protein ERA 98.6 1.1E-07 3.9E-12 80.5 9.2 107 30-137 61-182 (308)
14 1wb1_A Translation elongation 98.6 1.8E-07 6.1E-12 84.2 9.3 78 59-136 93-188 (482)
15 2e87_A Hypothetical protein PH 98.6 1.6E-06 5.3E-11 74.7 14.5 76 61-136 245-335 (357)
16 1puj_A YLQF, conserved hypothe 98.4 2.4E-07 8.2E-12 77.9 5.9 77 60-136 21-105 (282)
17 3t1o_A Gliding protein MGLA; G 98.4 8.1E-07 2.8E-11 68.0 8.3 77 59-135 94-190 (198)
18 2hjg_A GTP-binding protein ENG 98.4 3.2E-07 1.1E-11 81.1 6.0 84 51-136 71-164 (436)
19 3reg_A RHO-like small GTPase; 98.4 1.1E-06 3.8E-11 67.9 8.3 80 57-136 89-187 (194)
20 1ega_A Protein (GTP-binding pr 98.4 1.6E-06 5.4E-11 73.2 9.8 105 30-138 58-176 (301)
21 4bas_A ADP-ribosylation factor 98.4 5.2E-07 1.8E-11 69.5 6.0 79 58-136 82-188 (199)
22 1moz_A ARL1, ADP-ribosylation 98.4 1.2E-06 4.1E-11 66.6 7.8 79 58-136 81-179 (183)
23 2dyk_A GTP-binding protein; GT 98.4 7.3E-07 2.5E-11 66.1 6.4 76 59-136 76-161 (161)
24 2h57_A ADP-ribosylation factor 98.4 6.9E-07 2.4E-11 68.8 6.5 80 58-137 86-187 (190)
25 1mky_A Probable GTP-binding pr 98.3 5.2E-07 1.8E-11 79.8 6.2 80 55-136 74-165 (439)
26 3tkl_A RAS-related protein RAB 98.3 1.9E-06 6.5E-11 66.1 8.6 78 59-136 85-178 (196)
27 1m2o_B GTP-binding protein SAR 98.3 1.9E-06 6.5E-11 66.9 8.6 77 58-134 86-189 (190)
28 4gzl_A RAS-related C3 botulinu 98.3 9.1E-07 3.1E-11 69.5 6.8 80 56-135 95-203 (204)
29 1ksh_A ARF-like protein 2; sma 98.3 1.3E-06 4.5E-11 66.8 7.4 79 58-136 81-179 (186)
30 1r8s_A ADP-ribosylation factor 98.3 8.8E-07 3E-11 66.0 6.2 78 59-136 64-161 (164)
31 2h17_A ADP-ribosylation factor 98.3 9.4E-07 3.2E-11 67.7 6.3 77 58-134 84-180 (181)
32 2f7s_A C25KG, RAS-related prot 98.3 3E-06 1E-10 66.5 9.3 79 58-136 103-198 (217)
33 3tw8_B RAS-related protein RAB 98.3 2.3E-06 7.7E-11 64.5 8.2 78 59-136 78-170 (181)
34 3q72_A GTP-binding protein RAD 98.3 2.4E-06 8.2E-11 63.7 8.3 78 59-136 69-163 (166)
35 2g6b_A RAS-related protein RAB 98.3 2.8E-06 9.6E-11 64.2 8.7 79 58-136 79-173 (180)
36 1r2q_A RAS-related protein RAB 98.3 1.6E-06 5.3E-11 64.6 7.1 78 59-136 75-168 (170)
37 3q85_A GTP-binding protein REM 98.3 1.5E-06 5E-11 65.1 6.9 78 60-137 73-167 (169)
38 2atx_A Small GTP binding prote 98.3 3.8E-06 1.3E-10 64.7 9.3 78 58-135 85-191 (194)
39 1zd9_A ADP-ribosylation factor 98.3 1.5E-06 5.2E-11 67.0 7.0 78 59-136 87-184 (188)
40 1f6b_A SAR1; gtpases, N-termin 98.3 2.9E-06 1E-10 66.3 8.7 77 59-135 89-197 (198)
41 2lkc_A Translation initiation 98.3 1.9E-06 6.5E-11 65.0 7.4 80 58-137 74-171 (178)
42 1z0j_A RAB-22, RAS-related pro 98.3 2.6E-06 8.8E-11 63.5 8.1 77 60-136 76-168 (170)
43 1upt_A ARL1, ADP-ribosylation 98.3 2E-06 7E-11 64.3 7.4 78 59-136 71-168 (171)
44 2efe_B Small GTP-binding prote 98.3 3.2E-06 1.1E-10 63.9 8.5 77 60-136 82-174 (181)
45 4dhe_A Probable GTP-binding pr 98.3 4.3E-06 1.5E-10 65.8 9.3 77 60-136 113-210 (223)
46 3bc1_A RAS-related protein RAB 98.3 2.2E-06 7.5E-11 65.2 7.4 78 58-135 89-183 (195)
47 3pqc_A Probable GTP-binding pr 98.3 3.3E-06 1.1E-10 64.5 8.4 75 60-136 102-193 (195)
48 1ky3_A GTP-binding protein YPT 98.3 4.3E-06 1.5E-10 63.0 8.9 78 58-135 77-176 (182)
49 1c1y_A RAS-related protein RAP 98.3 3E-06 1E-10 62.9 7.9 76 60-135 72-165 (167)
50 2gco_A H9, RHO-related GTP-bin 98.3 2.7E-06 9.2E-11 66.4 7.9 78 58-135 92-198 (201)
51 1zj6_A ADP-ribosylation factor 98.3 2.2E-06 7.6E-11 65.8 7.2 78 59-136 80-177 (187)
52 1fzq_A ADP-ribosylation factor 98.3 1.5E-06 5E-11 66.9 6.2 78 59-136 80-177 (181)
53 3dz8_A RAS-related protein RAB 98.2 3.2E-06 1.1E-10 65.2 7.9 78 58-135 91-184 (191)
54 2iwr_A Centaurin gamma 1; ANK 98.2 4E-06 1.4E-10 63.5 8.2 76 60-135 70-167 (178)
55 2b6h_A ADP-ribosylation factor 98.2 1.4E-06 4.8E-11 67.8 5.7 77 59-135 93-189 (192)
56 2nzj_A GTP-binding protein REM 98.2 4.7E-06 1.6E-10 62.5 8.4 78 59-136 74-168 (175)
57 2j1l_A RHO-related GTP-binding 98.2 2.6E-06 8.9E-11 67.3 7.2 77 59-135 102-207 (214)
58 1mh1_A RAC1; GTP-binding, GTPa 98.2 1.5E-06 5.1E-11 65.9 5.6 78 59-136 73-179 (186)
59 2ew1_A RAS-related protein RAB 98.2 3.4E-06 1.1E-10 66.5 7.8 79 58-136 94-188 (201)
60 2gf9_A RAS-related protein RAB 98.2 3.7E-06 1.3E-10 64.6 7.9 77 59-135 91-183 (189)
61 2hup_A RAS-related protein RAB 98.2 3E-06 1E-10 66.3 7.4 76 60-135 99-191 (201)
62 2fu5_C RAS-related protein RAB 98.2 4.1E-06 1.4E-10 63.7 7.9 79 58-136 76-170 (183)
63 3lvq_E ARF-GAP with SH3 domain 98.2 2E-06 6.7E-11 76.8 7.0 80 57-136 384-483 (497)
64 2x77_A ADP-ribosylation factor 98.2 1.9E-06 6.4E-11 66.2 6.0 78 59-136 86-183 (189)
65 4dsu_A GTPase KRAS, isoform 2B 98.2 4.6E-06 1.6E-10 63.3 8.2 78 60-137 73-166 (189)
66 1svi_A GTP-binding protein YSX 98.2 8.5E-06 2.9E-10 62.5 9.7 74 61-136 104-194 (195)
67 3bwd_D RAC-like GTP-binding pr 98.2 1.3E-06 4.6E-11 66.1 5.1 78 58-135 75-179 (182)
68 1zbd_A Rabphilin-3A; G protein 98.2 5.7E-06 1.9E-10 64.1 8.8 78 58-135 76-169 (203)
69 1g16_A RAS-related protein SEC 98.2 6.3E-06 2.2E-10 61.4 8.7 77 60-136 73-164 (170)
70 1z08_A RAS-related protein RAB 98.2 2.9E-06 9.9E-11 63.4 6.8 78 58-135 74-167 (170)
71 1ek0_A Protein (GTP-binding pr 98.2 2.4E-06 8.2E-11 63.6 6.3 77 60-136 73-168 (170)
72 2fg5_A RAB-22B, RAS-related pr 98.2 3.6E-06 1.2E-10 65.1 7.3 77 60-136 93-185 (192)
73 2bcg_Y Protein YP2, GTP-bindin 98.2 6.4E-06 2.2E-10 64.1 8.7 79 58-136 76-170 (206)
74 3ec1_A YQEH GTPase; atnos1, at 98.2 1.5E-06 5E-11 75.6 5.5 92 50-142 60-167 (369)
75 2yc2_C IFT27, small RAB-relate 98.2 5.9E-06 2E-10 63.8 8.2 78 58-135 92-190 (208)
76 1z0f_A RAB14, member RAS oncog 98.2 4.2E-06 1.4E-10 62.9 7.1 76 60-135 85-176 (179)
77 4djt_A GTP-binding nuclear pro 98.2 2.7E-06 9.3E-11 66.8 6.3 77 60-136 82-174 (218)
78 3h2y_A GTPase family protein; 98.2 1E-06 3.4E-11 76.7 3.9 92 50-142 58-165 (368)
79 1x3s_A RAS-related protein RAB 98.2 4.8E-06 1.6E-10 63.7 7.4 77 60-136 85-177 (195)
80 3t5g_A GTP-binding protein RHE 98.2 5.4E-06 1.9E-10 62.9 7.6 78 59-136 74-168 (181)
81 3clv_A RAB5 protein, putative; 98.2 5.3E-06 1.8E-10 63.3 7.5 76 60-135 114-202 (208)
82 2fv8_A H6, RHO-related GTP-bin 98.2 4.4E-06 1.5E-10 65.4 7.2 78 58-135 92-198 (207)
83 2il1_A RAB12; G-protein, GDP, 98.2 3.1E-06 1E-10 65.6 6.1 76 60-135 96-188 (192)
84 3c5h_A Glucocorticoid receptor 98.1 3.1E-06 1.1E-10 69.4 6.4 74 62-135 162-253 (255)
85 2ce2_X GTPase HRAS; signaling 98.1 1.3E-05 4.3E-10 59.0 9.2 76 60-135 72-163 (166)
86 1wms_A RAB-9, RAB9, RAS-relate 98.1 1.2E-05 4.2E-10 60.4 9.2 78 58-135 75-172 (177)
87 2y8e_A RAB-protein 6, GH09086P 98.1 4.8E-06 1.7E-10 62.5 6.9 77 60-136 84-176 (179)
88 1lnz_A SPO0B-associated GTP-bi 98.1 2.4E-06 8.3E-11 73.8 5.9 78 60-137 234-330 (342)
89 2fn4_A P23, RAS-related protei 98.1 4.7E-06 1.6E-10 62.7 6.8 77 60-136 78-171 (181)
90 3ihw_A Centg3; RAS, centaurin, 98.1 7.4E-06 2.5E-10 63.3 8.0 76 60-135 83-178 (184)
91 4dcu_A GTP-binding protein ENG 98.1 2.2E-06 7.6E-11 76.1 5.7 86 50-137 90-185 (456)
92 2a5j_A RAS-related protein RAB 98.1 6.7E-06 2.3E-10 63.4 7.6 76 60-135 91-182 (191)
93 2bme_A RAB4A, RAS-related prot 98.1 5.9E-06 2E-10 62.8 7.1 78 58-135 78-171 (186)
94 4dcu_A GTP-binding protein ENG 98.1 2.6E-06 8.8E-11 75.7 5.8 76 58-135 273-367 (456)
95 3o47_A ADP-ribosylation factor 98.1 3.1E-06 1.1E-10 72.2 6.0 79 58-136 228-326 (329)
96 1z2a_A RAS-related protein RAB 98.1 3.5E-06 1.2E-10 62.7 5.6 76 60-135 75-165 (168)
97 3p32_A Probable GTPase RV1496/ 98.1 1.1E-06 3.6E-11 75.8 3.0 77 61-137 191-284 (355)
98 1kao_A RAP2A; GTP-binding prot 98.1 5.3E-06 1.8E-10 61.3 6.5 76 60-135 72-164 (167)
99 3sjy_A Translation initiation 98.1 1.3E-05 4.4E-10 70.1 10.0 78 59-136 95-191 (403)
100 1vg8_A RAS-related protein RAB 98.1 7.6E-06 2.6E-10 63.4 7.7 78 59-136 77-174 (207)
101 3kkq_A RAS-related protein M-R 98.1 1.1E-05 3.6E-10 61.3 8.3 76 60-135 87-180 (183)
102 3q3j_B RHO-related GTP-binding 98.1 6E-06 2E-10 65.4 7.1 80 57-136 93-202 (214)
103 3oes_A GTPase rhebl1; small GT 98.1 7E-06 2.4E-10 63.8 7.3 78 59-136 92-186 (201)
104 2q3h_A RAS homolog gene family 98.1 6E-06 2.1E-10 63.9 6.9 77 59-135 88-193 (201)
105 3cbq_A GTP-binding protein REM 98.1 1.2E-05 4.1E-10 62.7 8.5 77 60-136 94-187 (195)
106 1u8z_A RAS-related protein RAL 98.1 5E-06 1.7E-10 61.6 6.0 76 60-135 73-165 (168)
107 3con_A GTPase NRAS; structural 98.1 1.8E-05 6E-10 60.6 9.2 79 58-136 88-182 (190)
108 2oil_A CATX-8, RAS-related pro 98.1 7.6E-06 2.6E-10 62.9 7.0 76 60-135 95-186 (193)
109 3gj0_A GTP-binding nuclear pro 98.1 2.1E-06 7.3E-11 67.8 3.9 77 60-136 85-174 (221)
110 3cph_A RAS-related protein SEC 98.1 7.8E-06 2.7E-10 63.6 7.0 78 59-136 89-181 (213)
111 2gj8_A MNME, tRNA modification 98.1 4.9E-07 1.7E-11 69.3 0.0 76 60-136 81-165 (172)
112 2hxs_A RAB-26, RAS-related pro 98.1 5.6E-06 1.9E-10 62.4 6.0 77 60-136 77-172 (178)
113 3j2k_7 ERF3, eukaryotic polype 98.1 1.6E-05 5.3E-10 70.6 9.7 71 59-129 115-217 (439)
114 2bov_A RAla, RAS-related prote 98.1 1.3E-05 4.5E-10 61.8 8.0 78 60-137 83-177 (206)
115 2o52_A RAS-related protein RAB 98.1 9.3E-06 3.2E-10 63.3 7.2 77 59-135 94-186 (200)
116 2wji_A Ferrous iron transport 98.0 4.7E-06 1.6E-10 63.0 5.1 75 61-135 80-163 (165)
117 2j0v_A RAC-like GTP-binding pr 98.0 5.7E-06 1.9E-10 64.7 5.7 78 59-136 77-179 (212)
118 1z06_A RAS-related protein RAB 98.0 1.7E-05 5.9E-10 60.8 8.2 77 59-135 90-186 (189)
119 1m7b_A RND3/RHOE small GTP-bin 98.0 1.1E-05 3.7E-10 61.8 6.9 77 59-135 75-181 (184)
120 2a9k_A RAS-related protein RAL 98.0 1.4E-05 4.8E-10 60.3 7.3 77 60-136 87-180 (187)
121 2p5s_A RAS and EF-hand domain 98.0 6.3E-06 2.2E-10 64.0 5.4 76 60-135 98-195 (199)
122 3cpj_B GTP-binding protein YPT 98.0 1.1E-05 3.9E-10 63.9 6.9 79 58-136 81-175 (223)
123 2qu8_A Putative nucleolar GTP- 98.0 7.4E-06 2.5E-10 65.3 5.9 83 60-142 106-210 (228)
124 2yv5_A YJEQ protein; hydrolase 98.0 6.5E-06 2.2E-10 69.6 5.6 73 59-131 76-163 (302)
125 3l0i_B RAS-related protein RAB 98.0 2.1E-06 7E-11 66.8 2.2 78 59-136 102-195 (199)
126 3cnl_A YLQF, putative uncharac 98.0 1.2E-06 4.1E-11 72.9 0.8 73 60-135 19-99 (262)
127 1kk1_A EIF2gamma; initiation o 98.0 3.1E-05 1E-09 67.7 9.8 79 58-136 102-199 (410)
128 1s0u_A EIF-2-gamma, translatio 98.0 3.7E-05 1.3E-09 67.2 10.3 79 58-136 100-197 (408)
129 2erx_A GTP-binding protein DI- 98.0 1.4E-05 4.7E-10 59.4 6.5 77 60-136 72-166 (172)
130 4dkx_A RAS-related protein RAB 98.0 1.8E-05 6E-10 63.8 7.6 77 60-136 83-175 (216)
131 2atv_A RERG, RAS-like estrogen 98.0 1.1E-05 3.7E-10 62.4 5.9 76 60-135 96-189 (196)
132 1u0l_A Probable GTPase ENGC; p 98.0 4.5E-06 1.6E-10 70.4 4.0 78 55-132 77-168 (301)
133 2gf0_A GTP-binding protein DI- 98.0 1.8E-05 6.2E-10 60.7 7.1 78 60-137 77-171 (199)
134 3izq_1 HBS1P, elongation facto 98.0 1.5E-05 5.2E-10 73.7 7.6 70 58-127 264-362 (611)
135 3cb4_D GTP-binding protein LEP 97.9 2.8E-05 9.5E-10 71.9 9.3 78 59-136 91-181 (599)
136 2g3y_A GTP-binding protein GEM 97.9 4.6E-05 1.6E-09 61.0 9.4 78 59-136 108-202 (211)
137 1gwn_A RHO-related GTP-binding 97.9 2E-05 6.8E-10 62.1 6.8 78 58-135 95-202 (205)
138 3iby_A Ferrous iron transport 97.9 8.3E-06 2.8E-10 67.3 4.6 72 61-134 82-164 (256)
139 2wkq_A NPH1-1, RAS-related C3 97.9 2E-05 6.9E-10 65.4 6.9 79 57-135 221-328 (332)
140 3zvr_A Dynamin-1; hydrolase, D 97.9 1.6E-05 5.4E-10 75.6 6.5 105 27-134 149-275 (772)
141 3i8s_A Ferrous iron transport 97.9 6.1E-06 2.1E-10 68.5 3.1 75 60-136 83-168 (274)
142 3a1s_A Iron(II) transport prot 97.9 1.5E-05 5.3E-10 65.7 5.4 74 61-136 82-166 (258)
143 3th5_A RAS-related C3 botulinu 97.1 2.2E-06 7.5E-11 66.8 0.0 77 58-134 97-202 (204)
144 3qq5_A Small GTP-binding prote 97.8 1.3E-05 4.3E-10 71.2 4.8 76 60-137 111-196 (423)
145 2fh5_B SR-beta, signal recogni 97.8 3.7E-05 1.3E-09 60.0 7.0 75 60-134 76-213 (214)
146 3b1v_A Ferrous iron uptake tra 97.8 1.2E-05 4.1E-10 67.1 4.4 74 61-136 79-163 (272)
147 2hjg_A GTP-binding protein ENG 97.8 1.8E-05 6E-10 69.9 5.7 77 58-136 253-348 (436)
148 2p67_A LAO/AO transport system 97.8 4.6E-06 1.6E-10 71.5 1.8 76 61-136 168-260 (341)
149 3c5c_A RAS-like protein 12; GD 97.8 2.5E-05 8.6E-10 60.2 5.9 76 60-135 89-184 (187)
150 2cxx_A Probable GTP-binding pr 97.8 6.8E-05 2.3E-09 56.9 8.0 52 85-136 121-183 (190)
151 2www_A Methylmalonic aciduria 97.8 1.9E-05 6.5E-10 68.0 5.3 77 61-137 186-279 (349)
152 3p26_A Elongation factor 1 alp 97.8 6.2E-06 2.1E-10 73.9 2.2 68 59-126 131-227 (483)
153 2cjw_A GTP-binding protein GEM 97.7 0.00012 4.2E-09 56.7 8.6 76 60-135 78-170 (192)
154 3dpu_A RAB family protein; roc 97.7 2.2E-05 7.4E-10 71.0 4.6 78 60-137 119-208 (535)
155 1g7s_A Translation initiation 97.7 4.9E-05 1.7E-09 70.2 6.7 79 58-136 89-217 (594)
156 2zej_A Dardarin, leucine-rich 97.7 6.5E-05 2.2E-09 57.6 6.3 77 60-136 77-177 (184)
157 2ywe_A GTP-binding protein LEP 97.7 4.6E-05 1.6E-09 70.5 6.3 77 60-136 94-183 (600)
158 3llu_A RAS-related GTP-binding 97.7 8.5E-05 2.9E-09 57.5 6.7 75 60-135 93-195 (196)
159 3tr5_A RF-3, peptide chain rel 97.7 0.0001 3.6E-09 67.0 8.0 26 113-138 253-278 (528)
160 2wjg_A FEOB, ferrous iron tran 97.6 0.00013 4.3E-09 55.5 6.7 76 61-136 84-168 (188)
161 1mky_A Probable GTP-binding pr 97.6 0.00011 3.7E-09 64.9 7.1 76 59-136 260-354 (439)
162 3izy_P Translation initiation 97.6 2.9E-05 9.8E-10 71.0 3.5 80 58-137 71-168 (537)
163 1yrb_A ATP(GTP)binding protein 97.6 0.00017 6E-09 58.1 7.6 51 86-136 171-256 (262)
164 1udx_A The GTP-binding protein 97.6 0.00013 4.3E-09 64.7 6.9 82 60-142 233-330 (416)
165 2wsm_A Hydrogenase expression/ 97.5 2E-05 6.7E-10 62.1 1.2 51 86-136 154-213 (221)
166 3t5d_A Septin-7; GTP-binding p 97.5 8E-05 2.7E-09 61.4 4.9 81 62-142 115-209 (274)
167 3k53_A Ferrous iron transport 97.5 0.00014 4.7E-09 59.8 6.3 77 60-136 79-165 (271)
168 1f60_A Elongation factor EEF1A 97.5 0.00014 5E-09 64.7 6.8 70 58-127 104-202 (458)
169 2elf_A Protein translation elo 97.5 0.00025 8.4E-09 61.6 8.0 77 59-137 80-180 (370)
170 2aka_B Dynamin-1; fusion prote 97.5 9.7E-05 3.3E-09 60.8 5.0 76 60-135 159-251 (299)
171 2c78_A Elongation factor TU-A; 97.5 0.00018 6E-09 62.8 6.7 78 59-136 95-211 (405)
172 1zun_B Sulfate adenylate trans 97.4 0.00075 2.6E-08 59.4 9.5 67 59-126 124-213 (434)
173 3mca_A HBS1, elongation factor 97.4 0.00011 3.6E-09 67.8 4.2 79 58-136 274-396 (592)
174 1jwy_B Dynamin A GTPase domain 97.4 6.1E-05 2.1E-09 62.6 2.3 115 28-142 131-267 (315)
175 1d2e_A Elongation factor TU (E 97.3 0.00036 1.2E-08 60.8 6.9 78 59-136 86-194 (397)
176 2qm8_A GTPase/ATPase; G protei 97.3 0.00015 5.2E-09 62.1 4.1 76 61-136 167-260 (337)
177 2xtp_A GTPase IMAP family memb 97.3 0.00016 5.5E-09 58.6 3.6 78 59-137 102-208 (260)
178 1t9h_A YLOQ, probable GTPase E 97.2 0.00014 4.8E-09 62.0 2.7 71 58-128 82-168 (307)
179 1zo1_I IF2, translation initia 97.2 0.0001 3.5E-09 66.8 1.9 77 58-134 70-164 (501)
180 2rcn_A Probable GTPase ENGC; Y 97.2 0.00023 7.8E-09 61.9 3.9 72 60-131 128-213 (358)
181 3hvz_A Uncharacterized protein 97.2 0.00019 6.4E-09 49.4 2.5 34 154-187 17-67 (78)
182 2x2e_A Dynamin-1; nitration, h 97.1 0.0003 1E-08 60.2 3.9 107 28-134 130-255 (353)
183 3r7w_A Gtpase1, GTP-binding pr 97.1 0.0013 4.3E-08 55.3 7.1 77 54-131 72-175 (307)
184 2hf9_A Probable hydrogenase ni 97.0 0.00025 8.4E-09 55.8 2.3 50 87-136 165-223 (226)
185 1jny_A EF-1-alpha, elongation 97.0 0.00077 2.6E-08 59.4 5.5 68 59-126 104-202 (435)
186 2j69_A Bacterial dynamin-like 96.9 0.00098 3.3E-08 62.4 5.2 78 59-136 197-324 (695)
187 1r5b_A Eukaryotic peptide chai 96.7 0.0015 5.2E-08 58.1 5.2 70 58-127 140-242 (467)
188 3avx_A Elongation factor TS, e 96.6 0.004 1.4E-07 61.8 7.8 78 59-136 379-485 (1289)
189 3lxx_A GTPase IMAP family memb 96.5 0.0056 1.9E-07 48.8 6.8 106 30-135 80-212 (239)
190 3lxw_A GTPase IMAP family memb 96.4 0.0037 1.3E-07 50.7 5.2 77 60-136 103-207 (247)
191 2f9l_A RAB11B, member RAS onco 96.4 0.0077 2.6E-07 46.3 6.8 77 60-136 75-167 (199)
192 1dar_A EF-G, elongation factor 96.4 0.0052 1.8E-07 57.4 6.7 24 113-136 258-281 (691)
193 1pui_A ENGB, probable GTP-bind 96.3 0.014 4.9E-07 44.8 7.6 75 61-137 107-199 (210)
194 1zcb_A G alpha I/13; GTP-bindi 96.2 0.0053 1.8E-07 53.2 5.3 77 59-135 221-351 (362)
195 2h5e_A Peptide chain release f 96.2 0.014 4.8E-07 52.9 8.3 27 113-139 254-280 (529)
196 1cip_A Protein (guanine nucleo 96.2 0.004 1.4E-07 53.8 4.3 77 59-135 213-342 (353)
197 2qag_A Septin-2, protein NEDD5 96.1 0.012 3.9E-07 50.7 6.9 56 83-138 171-238 (361)
198 3vqt_A RF-3, peptide chain rel 96.1 0.01 3.5E-07 54.1 6.7 26 113-138 271-296 (548)
199 2xex_A Elongation factor G; GT 95.9 0.012 4E-07 55.1 6.5 25 113-137 256-280 (693)
200 2rdo_7 EF-G, elongation factor 95.9 0.016 5.4E-07 54.3 7.3 25 113-137 264-288 (704)
201 2dy1_A Elongation factor G; tr 95.8 0.0094 3.2E-07 55.4 5.2 24 113-136 250-273 (665)
202 3l82_B F-box only protein 4; T 95.7 0.012 4.1E-07 48.1 4.9 77 60-136 123-222 (227)
203 1oix_A RAS-related protein RAB 95.6 0.027 9.1E-07 43.1 6.4 75 61-135 100-190 (191)
204 1nrj_B SR-beta, signal recogni 95.0 0.016 5.3E-07 44.9 3.3 63 61-123 81-170 (218)
205 3t34_A Dynamin-related protein 94.8 0.022 7.7E-07 48.4 4.2 76 52-127 162-251 (360)
206 2qnr_A Septin-2, protein NEDD5 94.5 0.042 1.5E-06 45.9 5.1 57 78-135 147-212 (301)
207 2xtz_A Guanine nucleotide-bind 94.5 0.024 8.1E-07 48.9 3.5 22 113-134 321-342 (354)
208 2ged_A SR-beta, signal recogni 94.4 0.073 2.5E-06 40.0 5.9 40 62-101 118-171 (193)
209 2qag_C Septin-7; cell cycle, c 94.3 0.048 1.6E-06 48.1 5.2 57 84-140 165-230 (418)
210 3j25_A Tetracycline resistance 94.3 0.017 5.9E-07 53.4 2.4 25 112-136 214-238 (638)
211 1azs_C GS-alpha; complex (lyas 93.8 0.042 1.4E-06 48.3 3.7 22 113-134 361-382 (402)
212 3l2o_B F-box only protein 4; s 93.8 0.095 3.2E-06 44.6 5.7 77 60-136 208-307 (312)
213 3ohm_A Guanine nucleotide-bind 92.8 0.13 4.3E-06 44.0 5.1 22 113-134 294-315 (327)
214 2qpt_A EH domain-containing pr 92.7 0.1 3.4E-06 47.5 4.5 48 58-105 184-237 (550)
215 3r7w_B Gtpase2, GTP-binding pr 92.6 0.1 3.5E-06 44.8 4.3 42 60-101 70-121 (331)
216 4fn5_A EF-G 1, elongation fact 91.6 0.3 1E-05 45.5 6.5 25 113-137 267-291 (709)
217 2kmm_A Guanosine-3',5'-BIS(dip 88.8 0.17 6E-06 32.9 1.7 24 164-187 39-62 (73)
218 1h65_A Chloroplast outer envel 88.5 1.2 4E-05 35.9 6.9 43 60-102 117-170 (270)
219 1n0u_A EF-2, elongation factor 87.2 0.24 8.2E-06 47.3 2.2 41 59-99 118-163 (842)
220 2hj1_A Hypothetical protein; s 86.1 0.3 1E-05 34.6 1.7 21 167-187 64-84 (97)
221 2j37_W Signal recognition part 81.2 0.099 3.4E-06 47.2 -3.2 73 62-134 213-310 (504)
222 4fid_A G protein alpha subunit 79.3 1 3.5E-05 38.5 2.7 40 60-99 182-241 (340)
223 2k9x_A Tburm1, uncharacterized 79.0 1 3.4E-05 32.4 2.2 59 122-187 35-97 (110)
224 2qag_B Septin-6, protein NEDD5 78.3 5.3 0.00018 35.2 7.0 37 68-105 155-195 (427)
225 2v3c_C SRP54, signal recogniti 78.2 0.56 1.9E-05 41.3 0.7 41 60-100 208-252 (432)
226 3def_A T7I23.11 protein; chlor 77.1 6 0.0002 31.5 6.6 40 61-100 115-165 (262)
227 1tq4_A IIGP1, interferon-induc 75.8 1.6 5.6E-05 38.2 3.0 54 85-138 174-254 (413)
228 2q5w_D Molybdopterin convertin 75.4 1.6 5.4E-05 28.5 2.2 21 167-187 52-72 (77)
229 3kt9_A Aprataxin; FHA domain, 72.6 1.5 5.2E-05 31.1 1.6 22 166-187 68-91 (102)
230 1fm0_D Molybdopterin convertin 71.5 2.4 8.1E-05 27.8 2.4 20 167-186 56-75 (81)
231 3g9r_A Fusion complex of HIV-1 69.8 3.6 0.00012 24.2 2.5 16 4-19 27-42 (42)
232 1wgk_A Riken cDNA 2900073H19 p 69.4 2.1 7.2E-05 30.8 1.8 59 122-187 43-103 (114)
233 2kl0_A Putative thiamin biosyn 67.7 2.8 9.6E-05 27.6 2.0 14 174-187 47-60 (73)
234 2io0_B Small ubiquitin-related 64.1 3.5 0.00012 28.4 2.0 60 113-187 17-76 (91)
235 3po0_A Small archaeal modifier 64.1 4.1 0.00014 27.3 2.4 62 114-186 20-83 (89)
236 1vjk_A Molybdopterin convertin 64.0 4.3 0.00015 27.9 2.6 58 120-187 35-93 (98)
237 1rws_A Hypothetical protein PF 63.9 1.6 5.6E-05 28.8 0.3 20 167-186 52-71 (77)
238 1ryj_A Unknown; beta/alpha pro 63.6 4.7 0.00016 26.1 2.5 21 167-187 45-65 (70)
239 2k5p_A THis protein, thiamine- 62.3 3.5 0.00012 27.5 1.8 21 167-187 40-64 (78)
240 2r32_A GCN4-PII/tumor necrosis 61.8 5.1 0.00017 30.5 2.7 18 2-19 18-35 (166)
241 1ebo_A Ebola virus envelope pr 60.6 5.8 0.0002 28.5 2.7 19 2-20 10-28 (131)
242 4a9a_A Ribosome-interacting GT 60.1 5.9 0.0002 34.2 3.2 25 2-26 10-34 (376)
243 2cu3_A Unknown function protei 59.9 4.1 0.00014 25.8 1.7 16 172-187 44-59 (64)
244 2l52_A Methanosarcina acetivor 59.6 4.5 0.00015 28.0 2.0 16 172-187 79-94 (99)
245 2io1_B Small ubiquitin-related 59.4 5.5 0.00019 27.4 2.4 60 113-187 19-78 (94)
246 1tyg_B YJBS; alpha beta barrel 57.3 6 0.00021 27.1 2.3 14 174-187 69-82 (87)
247 3sop_A Neuronal-specific septi 56.1 13 0.00045 30.1 4.6 18 87-104 141-158 (270)
248 1f0z_A THis protein; ubiquitin 55.8 3.6 0.00012 26.2 0.9 14 174-187 48-61 (66)
249 3rpf_C Molybdopterin convertin 55.5 7.3 0.00025 25.2 2.4 16 171-186 53-68 (74)
250 3fm8_A Kinesin-like protein KI 55.5 5.4 0.00018 29.0 1.9 21 165-185 93-113 (124)
251 1wm3_A Ubiquitin-like protein 54.9 5.7 0.00019 25.7 1.7 60 112-186 12-71 (72)
252 1wz0_A Ubiquitin-like protein 54.6 6.6 0.00023 27.6 2.2 60 113-187 36-95 (104)
253 3a4r_A Nfatc2-interacting prot 53.7 6.2 0.00021 26.1 1.8 55 113-187 20-79 (79)
254 2d07_B Ubiquitin-like protein 53.5 6.7 0.00023 26.8 2.0 60 113-187 29-88 (93)
255 4ejq_A Kinesin-like protein KI 53.4 6 0.00021 29.7 1.9 20 166-185 114-133 (154)
256 2g1e_A Hypothetical protein TA 52.8 8.9 0.0003 25.4 2.5 59 121-187 24-85 (90)
257 1wwt_A Threonyl-tRNA synthetas 51.5 4.9 0.00017 26.9 1.0 24 164-187 49-72 (88)
258 1wln_A Afadin; beta sandwich, 51.4 7.6 0.00026 27.6 2.1 20 166-185 84-103 (120)
259 4h87_A Kanadaptin; FHA domain 51.2 6.9 0.00024 28.5 1.9 30 154-185 85-119 (130)
260 3gqs_A Adenylate cyclase-like 49.9 6.2 0.00021 27.3 1.4 20 166-185 73-92 (106)
261 1lgp_A Cell cycle checkpoint p 49.3 9.9 0.00034 26.6 2.4 21 166-186 72-94 (116)
262 3hx1_A SLR1951 protein; P74513 46.2 5.8 0.0002 28.9 0.8 19 166-185 86-104 (131)
263 3dm5_A SRP54, signal recogniti 45.7 16 0.00055 32.2 3.7 63 62-126 212-280 (443)
264 4g2k_A General control protein 45.0 14 0.00049 26.9 2.7 18 2-19 25-42 (125)
265 2l76_A Nfatc2-interacting prot 42.6 11 0.00038 26.4 1.7 54 113-186 32-90 (95)
266 2qjl_A URM1, ubiquitin-related 42.3 11 0.00038 25.8 1.7 61 120-187 30-94 (99)
267 3dwg_C 9.5 kDa culture filtrat 42.2 11 0.00037 25.4 1.6 61 120-186 24-87 (93)
268 1r21_A Antigen KI-67; beta san 40.9 8.5 0.00029 27.6 1.0 20 166-185 79-98 (128)
269 2eke_C Ubiquitin-like protein 40.8 14 0.00047 26.1 2.0 59 114-187 43-101 (106)
270 2lw9_A Unconventionnal myosin- 38.9 27 0.00092 21.4 2.8 22 4-25 5-26 (51)
271 1gxc_A CHK2, CDS1, serine/thre 38.6 10 0.00035 28.0 1.1 21 166-186 107-129 (149)
272 1gp8_A Protein (scaffolding pr 38.4 19 0.00066 21.0 2.0 13 3-15 6-18 (40)
273 2l32_A Small archaeal modifier 38.2 17 0.00056 23.9 2.0 20 167-187 42-61 (74)
274 1dmz_A Protein (protein kinase 38.1 8.2 0.00028 29.0 0.5 20 166-185 87-108 (158)
275 3kyd_D Small ubiquitin-related 37.7 19 0.00065 25.9 2.4 60 113-187 52-111 (115)
276 1qu5_A Protein kinase SPK1; FH 37.3 9.9 0.00034 29.4 0.8 20 166-185 111-132 (182)
277 2jqj_A DNA damage response pro 37.0 13 0.00044 27.5 1.4 20 166-185 91-111 (151)
278 3po8_A RV0020C protein, putati 36.7 13 0.00046 25.2 1.4 19 166-185 69-87 (100)
279 1g6g_A Protein kinase RAD53; b 36.3 16 0.00056 26.1 1.9 21 166-186 83-105 (127)
280 2k8h_A Small ubiquitin protein 36.2 14 0.00048 26.3 1.4 55 113-187 38-97 (110)
281 2pie_A E3 ubiquitin-protein li 36.2 16 0.00056 26.5 1.9 21 166-186 79-101 (138)
282 1uht_A Expressed protein; FHA 36.1 13 0.00045 26.1 1.3 20 166-185 80-101 (118)
283 2csw_A Ubiquitin ligase protei 35.6 16 0.00055 26.8 1.8 21 166-186 87-109 (145)
284 2jxx_A Nfatc2-interacting prot 35.5 15 0.0005 25.6 1.4 55 113-187 38-97 (97)
285 2wq1_A General control protein 34.9 36 0.0012 19.0 2.7 17 3-19 12-28 (33)
286 1g3g_A Protien kinase SPK1; FH 33.5 18 0.00063 27.1 1.8 20 166-185 111-132 (164)
287 2bps_A YUKD protein; ubiquitin 33.1 17 0.00057 24.6 1.4 55 120-185 25-80 (81)
288 3he5_A Synzip1; heterodimeric 32.8 27 0.00093 20.6 2.1 16 5-20 31-46 (49)
289 3va4_A Mediator of DNA damage 32.2 22 0.00074 25.8 2.0 19 167-185 94-116 (132)
290 2jpe_A Nuclear inhibitor of pr 31.2 14 0.00046 27.0 0.7 20 166-185 104-125 (140)
291 3elv_A PRE-mRNA leakage protei 29.5 17 0.00057 28.9 1.0 20 166-185 168-189 (205)
292 2xt9_B Putative signal transdu 29.0 21 0.00072 24.9 1.4 19 166-185 77-95 (115)
293 2k6p_A Uncharacterized protein 28.9 27 0.00092 23.3 1.9 23 164-186 28-50 (92)
294 2kb3_A Oxoglutarate dehydrogen 28.4 19 0.00063 26.6 1.0 19 166-185 112-130 (143)
295 1mzk_A Kinase associated prote 28.1 18 0.00062 26.3 0.9 20 166-185 80-109 (139)
296 1v8c_A MOAD related protein; r 27.7 27 0.00092 26.5 1.9 16 172-187 67-82 (168)
297 2brf_A Bifunctional polynucleo 27.0 22 0.00076 25.4 1.2 21 166-186 74-96 (110)
298 3els_A PRE-mRNA leakage protei 26.7 18 0.00061 27.2 0.7 20 166-185 121-142 (158)
299 2ke4_A CDC42-interacting prote 25.6 51 0.0017 22.9 2.8 25 2-26 19-43 (98)
300 2ff4_A Probable regulatory pro 25.4 26 0.00088 29.7 1.5 20 166-185 352-371 (388)
301 3tix_A Ubiquitin-like protein 23.6 33 0.0011 27.2 1.7 59 113-187 68-127 (207)
302 1dm9_A Hypothetical 15.5 KD pr 23.2 32 0.0011 25.0 1.5 24 163-186 35-58 (133)
303 2kfu_A RV1827 PThr 22; FHA dom 22.8 33 0.0011 25.9 1.5 19 166-185 121-139 (162)
304 3pge_A SUMO-modified prolifera 22.8 39 0.0013 26.5 2.0 60 113-187 40-99 (200)
305 1v1c_A Obscurin; muscle, sarco 22.1 64 0.0022 21.2 2.6 14 174-187 23-36 (71)
306 1f8y_A Nucleoside 2-deoxyribos 22.0 68 0.0023 23.9 3.2 38 59-96 75-116 (157)
307 1hji_B NUN-protein; bacterioph 21.9 82 0.0028 16.2 2.4 17 4-20 9-25 (26)
308 4a94_C Carboxypeptidase inhibi 21.1 22 0.00075 21.4 0.1 7 166-172 44-50 (53)
309 2cly_B ATP synthase D chain, m 21.1 54 0.0018 24.8 2.4 20 3-22 107-126 (160)
310 3goe_A DNA repair protein RAD6 20.5 45 0.0016 22.6 1.6 59 114-186 22-80 (82)
311 1uo4_A General control protein 20.3 94 0.0032 17.4 2.7 17 3-19 13-29 (34)
312 3v2d_F 50S ribosomal protein L 20.2 2.4E+02 0.0083 22.0 6.2 89 30-129 87-188 (210)
313 2wps_A Trimeric autotransporte 20.1 70 0.0024 22.6 2.6 20 2-21 10-29 (107)
No 1
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=242.62 Aligned_cols=105 Identities=50% Similarity=0.867 Sum_probs=97.7
Q ss_pred CCCCcEEEEEecCCCCChHHHHHHhcCCCEEEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccC---
Q psy7063 84 RVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG--- 160 (188)
Q Consensus 84 ~~~kP~IlV~NKiDl~~~e~l~~l~~~~~~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~g--- 160 (188)
+.++|+++++||+|....++++.+...++.+++|+..+.|++.|.+.+|+.|+++++||+.|+.+++.+.|+.++++
T Consensus 247 ~~~~p~i~v~nKid~~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~~a~~at 326 (376)
T 4a9a_A 247 RRYMPAIYVLNKIDSLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCS 326 (376)
T ss_dssp CEEECEEEEEECGGGSCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEEBTTBCB
T ss_pred hhccceEEEEecccccCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccccCCCCc
Confidence 34689999999999988887777766678999999999999999999999999999999999999999999999987
Q ss_pred ----------------------CCCCCCCCcccCCCccccCCCeEEEeeC
Q psy7063 161 ----------------------GTSTKYSPQRVGLAHVMADEDVIQIVKK 188 (188)
Q Consensus 161 ----------------------g~~~k~~~qrvg~d~~L~d~Dvv~iv~~ 188 (188)
|.++||.||++|+||+|+|||||+||+|
T Consensus 327 ~~D~a~~ih~d~~~~F~~a~v~Gs~~K~~~r~eGkdyvv~DGDVi~iv~k 376 (376)
T 4a9a_A 327 VKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTILKK 376 (376)
T ss_dssp HHHHHHHHCGGGGGGEEEEEEESTTSSSSSEEECTTCBCCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhhHhhhcCcccCCCCCccCCCcEEcCCCEEEEEeC
Confidence 7799999999999999999999999987
No 2
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.86 E-value=1.9e-22 Score=144.52 Aligned_cols=57 Identities=51% Similarity=0.782 Sum_probs=54.5
Q ss_pred HHhcccceeeeCCCCCCCCCCCcEEe-ccC------------------------CCCCCCCCcccCCCccccCCCeEEEe
Q psy7063 132 WLYLSLIRVYTKKPGAPPDFDDGLIL-RKG------------------------GTSTKYSPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 132 ~~~L~~irVY~k~~g~~~d~~~p~il-~~g------------------------g~~~k~~~qrvg~d~~L~d~Dvv~iv 186 (188)
|+.|++||||||++|+.||+++|++| |+| |+||||+|||||+||+|+|||||+|+
T Consensus 6 ~~~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv 85 (93)
T 2eki_A 6 SGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIV 85 (93)
T ss_dssp SSSCCEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEE
T ss_pred hhhcCeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEE
Confidence 67899999999999999999999999 888 88999999999999999999999999
Q ss_pred eC
Q psy7063 187 KK 188 (188)
Q Consensus 187 ~~ 188 (188)
++
T Consensus 86 ~~ 87 (93)
T 2eki_A 86 KK 87 (93)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 3
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.67 E-value=1.1e-17 Score=148.01 Aligned_cols=117 Identities=26% Similarity=0.376 Sum_probs=84.9
Q ss_pred cCCchHHHHHHHhcC-CCCcEEEEEecCCCCChHHHHHHh---c--CCCEEEEeccccccHHHH----------------
Q psy7063 70 DCNADELIDVINANR-VYLPCIYAYNKIDQISIEEVDRIA---R--QPNSVVVSCNMKLNLDYL---------------- 127 (188)
Q Consensus 70 D~s~dd~~~~l~~~~-~~kP~IlV~NKiDl~~~e~l~~l~---~--~~~~vpISA~~~~gld~L---------------- 127 (188)
+|+.++......... ..+|+|+|+||+|+...+.+..+. . ..+++|+||+.+.|+++|
T Consensus 197 ~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~ 276 (397)
T 1wxq_A 197 KWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFK 276 (397)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC------
T ss_pred cCCHHHHHHHHHhhhccCCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCcccc
Confidence 566555433332211 249999999999987544444332 1 235899999998887542
Q ss_pred ----------------H-----------------HHHHHhcccceeee--------CCCCCCCCCCCcEEeccC------
Q psy7063 128 ----------------L-----------------DIIWLYLSLIRVYT--------KKPGAPPDFDDGLILRKG------ 160 (188)
Q Consensus 128 ----------------~-----------------~~I~~~L~~irVY~--------k~~g~~~d~~~p~il~~g------ 160 (188)
. +++|+.|++++||| +++|.. .++|+++|+|
T Consensus 277 ~~~~l~~~~~~~~e~ire~~l~~~g~~g~~~~i~~~~~~~L~li~vft~~~~~~~~~~~g~~--~~~~~~l~~G~t~~d~ 354 (397)
T 1wxq_A 277 VLRDMSEKQKRALMVIKEKVLDRFGSTGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGNV--LPHVFLMKKGSTPRDL 354 (397)
T ss_dssp -----------CTTHHHHHHTSSSSSCSHHHHHHHHHHTTSCEEEEEEESCC-----CCSCS--SCCCEEEETTCCHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhCCeEEEeecccccccCCcCcc--cceeEEeCCCCCHHHH
Confidence 1 47799999999999 466654 8899999999
Q ss_pred --------CCC---C--CCCCcccCCCccccCCCeEEEeeC
Q psy7063 161 --------GTS---T--KYSPQRVGLAHVMADEDVIQIVKK 188 (188)
Q Consensus 161 --------g~~---~--k~~~qrvg~d~~L~d~Dvv~iv~~ 188 (188)
|+. | +..|||||+||+|+|||||+|+++
T Consensus 355 a~~iH~d~~~~f~~a~~~~~~~~~g~~~~l~dgDvv~i~~~ 395 (397)
T 1wxq_A 355 AFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVSV 395 (397)
T ss_dssp HHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEEEC
T ss_pred HHHHhHHHHhhhhhhHHhcCCEEcCCCccccCCCEEEEEeC
Confidence 221 2 348999999999999999999974
No 4
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.39 E-value=4.7e-13 Score=117.27 Aligned_cols=112 Identities=21% Similarity=0.245 Sum_probs=82.0
Q ss_pred cCCchHHHHHHHhc--CCCCcEEEEEecCCC--CC---hHHHHHHh-----cCCCEEEEeccc-----------------
Q psy7063 70 DCNADELIDVINAN--RVYLPCIYAYNKIDQ--IS---IEEVDRIA-----RQPNSVVVSCNM----------------- 120 (188)
Q Consensus 70 D~s~dd~~~~l~~~--~~~kP~IlV~NKiDl--~~---~e~l~~l~-----~~~~~vpISA~~----------------- 120 (188)
+|+.++ ...+... ...+|+++|+||.|. .+ ...++.+. ...+++|+||+.
T Consensus 184 ~~~~~~-~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~~~~~~l~ 262 (368)
T 2dby_A 184 PPSEAV-ARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGEEARELLA 262 (368)
T ss_dssp CCCHHH-HHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchHHHHHHHH
Confidence 565443 3444332 235999999999973 32 23233322 124689999887
Q ss_pred -----cccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccC--------------------------------CC-
Q psy7063 121 -----KLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG--------------------------------GT- 162 (188)
Q Consensus 121 -----~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~g--------------------------------g~- 162 (188)
+.|++.|.+++|+.|+++++||.. |+..+|.++++| |.
T Consensus 263 ~~g~~~~gl~~li~~~~~~L~li~~ft~g----~~e~~aw~i~~g~ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~ 338 (368)
T 2dby_A 263 AYGLQESGLQRLARAGYRALDLLTFFTAG----EKEVRAWTVRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGW 338 (368)
T ss_dssp HTTCCSCHHHHHHHHHHHHTTEEEEEEES----SSCEEEEEEETTCBHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSH
T ss_pred HhCcchhhHHHHHHHHHHHhCCEEEECCC----CCCcceEEecCCCcHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCH
Confidence 468899999999999999999964 458899999999 32
Q ss_pred -CCCCCC--cccCCCccccCCCeEEEe
Q psy7063 163 -STKYSP--QRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 163 -~~k~~~--qrvg~d~~L~d~Dvv~iv 186 (188)
.||..| ++.|+||+++|||||.+.
T Consensus 339 ~~~k~~g~~r~~gk~y~v~dgdi~~~~ 365 (368)
T 2dby_A 339 ARAKERGWVRLEGKDYEVQDGDVIYVL 365 (368)
T ss_dssp HHHHHTTCCEEECTTCBCCTTEEEEEE
T ss_pred HHHHhcCCccccCCCceecCCCEEEEE
Confidence 367777 667999999999999984
No 5
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.35 E-value=1.6e-12 Score=113.81 Aligned_cols=112 Identities=17% Similarity=0.205 Sum_probs=82.1
Q ss_pred cCCchHHHHHHHh--cCCCCcEEEEEecCCCC--ChHHHHHHh-----cCCCEEEEeccc--------------------
Q psy7063 70 DCNADELIDVINA--NRVYLPCIYAYNKIDQI--SIEEVDRIA-----RQPNSVVVSCNM-------------------- 120 (188)
Q Consensus 70 D~s~dd~~~~l~~--~~~~kP~IlV~NKiDl~--~~e~l~~l~-----~~~~~vpISA~~-------------------- 120 (188)
+|+.++ ...+.. ....||+++|+||.|.. .++.++.+. ....+||+||+.
T Consensus 182 ~~~~~e-~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E~el~~l~~~e~~~~l~~~g 260 (363)
T 1jal_A 182 GLDKEE-LQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLG 260 (363)
T ss_dssp CCCHHH-HHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHHHHGGGSCSSTTHHHHTTSS
T ss_pred CCCHHH-HHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHHHHHHHhcCHHHHHHHHHHhC
Confidence 566554 344433 22469999999999964 223333332 123589999764
Q ss_pred --cccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccC--------------------------------CC--CC
Q psy7063 121 --KLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG--------------------------------GT--ST 164 (188)
Q Consensus 121 --~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~g--------------------------------g~--~~ 164 (188)
+.|++.|.+++|+.|+++++||..| +..+|.++++| |. .|
T Consensus 261 ~~~~gl~~li~~~~~~L~li~~ft~g~----~e~raw~i~~G~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~ 336 (363)
T 1jal_A 261 IEEPGLNRVIRAGYALLNLQTYFTAGV----KEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGA 336 (363)
T ss_dssp CCSCTTHHHHHHHHHHTTEEEEEEECS----SEEEEEEEETTCBHHHHHHTTCTTHHHHCCEEEEECHHHHHHTTSHHHH
T ss_pred cccccHHHHHHHHHHHhCCEEEECCCC----CCcceeEecCCCcHHHHHHhhHHHHHhccEEEEEcCHHHHHHhCCHHHH
Confidence 3688999999999999999999543 47799999999 32 36
Q ss_pred CCCC--cccCCCccccCCCeEEEe
Q psy7063 165 KYSP--QRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 165 k~~~--qrvg~d~~L~d~Dvv~iv 186 (188)
|..| ++.|+||+++|||||.+.
T Consensus 337 k~~g~~r~egk~y~v~dgDii~f~ 360 (363)
T 1jal_A 337 KEAGKWRLEGKDYIVQDGDVMHFR 360 (363)
T ss_dssp HHTTCCEEECTTCBCCTTCEEEEE
T ss_pred HhcCCeeccCCccEecCCCEEEEE
Confidence 7777 667999999999999984
No 6
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.19 E-value=1.2e-11 Score=109.43 Aligned_cols=111 Identities=23% Similarity=0.298 Sum_probs=81.7
Q ss_pred cCCchHHHHHHHh--cCCCCcEEEEEecCC--CC--ChHH---HHHHhc----CCCEEEEecccc---------------
Q psy7063 70 DCNADELIDVINA--NRVYLPCIYAYNKID--QI--SIEE---VDRIAR----QPNSVVVSCNMK--------------- 121 (188)
Q Consensus 70 D~s~dd~~~~l~~--~~~~kP~IlV~NKiD--l~--~~e~---l~~l~~----~~~~vpISA~~~--------------- 121 (188)
||+.++ .+.+.. ...++|+++++|+.+ .. .++. +.++.. ...+||+||+.+
T Consensus 205 ~~~~~e-~e~i~~~~llt~KPviy~~Nv~e~~~~~~~n~~~~~v~~~~~~~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l 283 (396)
T 2ohf_A 205 DWNDKE-IEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYL 283 (396)
T ss_dssp CCCHHH-HHHHHHHCCGGGSCEEEEEECCHHHHHHTCCHHHHHHHHHHHHHSTTCEEEEECHHHHHHHHHSCHHHHHHHH
T ss_pred cCCHHH-HHHHHHHHHHhCCceEEEEEecHHHhcccccHHHHHHHHHHHhhCCCCeEEEEEcHHHHHHhhCCHHHHHHHH
Confidence 677665 333332 235799999999973 22 1221 222211 234899999864
Q ss_pred ------ccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccC--------------------------------CC-
Q psy7063 122 ------LNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG--------------------------------GT- 162 (188)
Q Consensus 122 ------~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~g--------------------------------g~- 162 (188)
.|++.|.++.|+.|+++++||..| |.-+|.++++| |.
T Consensus 284 ~~~g~~~~l~~li~~~~~~L~li~~fT~g~----~evrawti~~g~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~ 359 (396)
T 2ohf_A 284 EANMTQSALPKIIKAGFAALQLEYFFTAGP----DEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSE 359 (396)
T ss_dssp HHTTCCCSHHHHHHHHHHHTTEEEEEEESS----SEEEEEEEETTCBHHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSH
T ss_pred HHhCCCchHHHHHHHHHHHhCCEEEECCCC----CcceeEEecCCCcHHHHHhhhHHHHHhcceEEEEccHHHHHHhCCH
Confidence 458999999999999999999975 34589999999 33
Q ss_pred -CCCCCC--cccCCCccccCCCeEEE
Q psy7063 163 -STKYSP--QRVGLAHVMADEDVIQI 185 (188)
Q Consensus 163 -~~k~~~--qrvg~d~~L~d~Dvv~i 185 (188)
.||+.| +++|+||+++|||||.+
T Consensus 360 ~~~k~~g~~r~~Gk~y~v~dgDii~f 385 (396)
T 2ohf_A 360 NAVKAAGKYRQQGRNYIVEDGDIIFF 385 (396)
T ss_dssp HHHHHTTCCEEECTTCBCCTTCEEEE
T ss_pred HHHHhcCcccccCCCceeeCCCEEEE
Confidence 567777 89999999999999998
No 7
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.10 E-value=4.1e-10 Score=98.27 Aligned_cols=133 Identities=20% Similarity=0.206 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcc------cceeEEEccCC---c--cch------------------------------
Q psy7063 3 ILEKISEIEKEIARTQKNKVLAYC------WSKGTFQSYTS---S--INR------------------------------ 41 (188)
Q Consensus 3 i~~~i~~~e~e~~~~~~~~~~~~~------~~~~~~~~~~~---~--ln~------------------------------ 41 (188)
+++||..|.+++++..+.|...|. ++.++|+|++| | +|.
T Consensus 149 ~~~~i~~l~~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 149 YKRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp HHHHHHHHHHHHHHHHC-------------CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 688999999999999887777663 67789999986 1 554
Q ss_pred ----------hchhhHHHHHHhhhhhcccceeeEEE-EecCCchH--HH-------HHHHhc-CCCCcEEEEEecCCCCC
Q psy7063 42 ----------HYYYKSARAYEADTLPSKLTLKNVLF-REDCNADE--LI-------DVINAN-RVYLPCIYAYNKIDQIS 100 (188)
Q Consensus 42 ----------~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~dd--~~-------~~l~~~-~~~kP~IlV~NKiDl~~ 100 (188)
.+++..+.+|..++.+ +..||+++ ++|++..+ .. +.+... ...+|+|+|+||+|+.+
T Consensus 229 ~l~DT~G~i~~lp~~lve~f~~tl~~--~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 229 MLVDTVGFIRGIPPQIVDAFFVTLSE--AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp EEEECCCBCSSCCGGGHHHHHHHHHG--GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC
T ss_pred EEEeCCCchhcCCHHHHHHHHHHHHH--HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC
Confidence 2355666777777765 78999998 88987432 22 222221 24689999999999875
Q ss_pred hH--H-HHHH----hcC----CCEEEEeccccccHHHHHHHHHHhccc
Q psy7063 101 IE--E-VDRI----ARQ----PNSVVVSCNMKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 101 ~e--~-l~~l----~~~----~~~vpISA~~~~gld~L~~~I~~~L~~ 137 (188)
.. . ...+ ..+ .+++++||+++.|+++|.+.|.+.+..
T Consensus 307 ~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 307 GDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp SCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 32 1 1111 111 247999999999999999999987764
No 8
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.05 E-value=8.6e-11 Score=103.77 Aligned_cols=111 Identities=21% Similarity=0.243 Sum_probs=80.3
Q ss_pred cCCchHHHHHHHh--cCCCCcEEEEEecCCC--C-C-hHHH---HHHh-c-C--CCEEEEeccc----------------
Q psy7063 70 DCNADELIDVINA--NRVYLPCIYAYNKIDQ--I-S-IEEV---DRIA-R-Q--PNSVVVSCNM---------------- 120 (188)
Q Consensus 70 D~s~dd~~~~l~~--~~~~kP~IlV~NKiDl--~-~-~e~l---~~l~-~-~--~~~vpISA~~---------------- 120 (188)
+|+.++. +.+.. ...++|+++++|+.|. . + ++.+ .++. . . ..+||+||+.
T Consensus 207 ~~~~~e~-e~i~~~~~lt~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l 285 (392)
T 1ni3_A 207 DWSNREV-EIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEEC 285 (392)
T ss_dssp CCCHHHH-HHHHTTCCGGGSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHH
T ss_pred CCCHHHH-HHHHHHhhhccCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHH
Confidence 4665542 44432 2247999999999983 2 1 2223 2222 2 2 3599999987
Q ss_pred -----cccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccC--------------------------------CC-
Q psy7063 121 -----KLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKG--------------------------------GT- 162 (188)
Q Consensus 121 -----~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~g--------------------------------g~- 162 (188)
+.|++.|.++.|+.|+++++||..|.. .+|.++++| |.
T Consensus 286 ~~~g~~~gl~~~i~~~~~~L~l~~~ft~g~~e----~rawti~~G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~ 361 (392)
T 1ni3_A 286 KKLNTKSMLPKIIVTGYNALNLINYFTCGEDE----VRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTE 361 (392)
T ss_dssp HHTTCCCSHHHHHHHHHHHTTEEEEEECCSSE----EEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSH
T ss_pred HHhCCcccHHHHHHHHHHHhCCEEEECCCCCc----ceeEEeCCCCcHHHHccccchhhhhccEEEEECCHHHHHHcCCH
Confidence 589999999999999999999987654 489999999 22
Q ss_pred -CCCC-CCcc-cCCCccccCCCeEEE
Q psy7063 163 -STKY-SPQR-VGLAHVMADEDVIQI 185 (188)
Q Consensus 163 -~~k~-~~qr-vg~d~~L~d~Dvv~i 185 (188)
.||. .++| .|+||+++|||||.+
T Consensus 362 ~~~k~~g~~r~~gk~y~v~dgdv~~f 387 (392)
T 1ni3_A 362 NACRAAGKYLTKGKEYVMESGDIAHW 387 (392)
T ss_dssp HHHHHTTCSCEEETTCBCCTTCEEEC
T ss_pred HHHHHcCCccccCCceeeeCCCEEEE
Confidence 1232 4577 999999999999986
No 9
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.99 E-value=3.1e-09 Score=95.80 Aligned_cols=133 Identities=13% Similarity=0.072 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcc---cceeEEEccCC---c--cchhchhh----------------------------
Q psy7063 3 ILEKISEIEKEIARTQKNKVLAYC---WSKGTFQSYTS---S--INRHYYYK---------------------------- 46 (188)
Q Consensus 3 i~~~i~~~e~e~~~~~~~~~~~~~---~~~~~~~~~~~---~--ln~~l~~~---------------------------- 46 (188)
++++|..|++++++..+.+...+. -.++.++|++| | +|+.+...
T Consensus 206 l~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~l 285 (476)
T 3gee_A 206 LTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRL 285 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEE
Confidence 678999999999998876555443 34589999986 2 77633221
Q ss_pred -----------HHHHHHhhhhhcccceeeEEE-EecCCch-------HHHHHHHhcCCCCcEEEEEecCCCCChHHHH--
Q psy7063 47 -----------SARAYEADTLPSKLTLKNVLF-REDCNAD-------ELIDVINANRVYLPCIYAYNKIDQISIEEVD-- 105 (188)
Q Consensus 47 -----------~~~a~~~~~~~~~i~~ADvvl-~~D~s~d-------d~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~-- 105 (188)
.+.++.-..+...+.+||+++ ++|++.. +....+.... .+|+++|+||+|+.+.....
T Consensus 286 iDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~~piIvV~NK~Dl~~~~~~~~~ 364 (476)
T 3gee_A 286 TDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-AAKFLTVANKLDRAANADALIR 364 (476)
T ss_dssp EC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-TSEEEEEEECTTSCTTTHHHHH
T ss_pred EECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-CCCEEEEEECcCCCCccchhHH
Confidence 111111111222478899998 8887632 2233333333 79999999999998543322
Q ss_pred HHhc--CCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 106 RIAR--QPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 106 ~l~~--~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
.+.. +.+++++||++|.|+++|.+.|.+.+.
T Consensus 365 ~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 365 AIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred HHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 2322 456899999999999999999998875
No 10
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.81 E-value=2.1e-08 Score=90.08 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcc---cceeEEEccCC---c--cchhchhh---------------------------
Q psy7063 2 GILEKISEIEKEIARTQKNKVLAYC---WSKGTFQSYTS---S--INRHYYYK--------------------------- 46 (188)
Q Consensus 2 ~i~~~i~~~e~e~~~~~~~~~~~~~---~~~~~~~~~~~---~--ln~~l~~~--------------------------- 46 (188)
.++++|..+.++++++.+++...+. -.++.++|++| | +|+.+..+
T Consensus 196 ~~~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~ 275 (462)
T 3geh_A 196 AIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQ 275 (462)
T ss_dssp THHHHHHHHHHHHHHHTTTHHHHHHHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEE
Confidence 3678999999999998776655444 34589999996 2 67632211
Q ss_pred ------------HHHHHHhhhhhcccceeeEEE-EecCCc---hHHHHHHHhcCCCCcEEEEEecCCCCChHHHHHHh--
Q psy7063 47 ------------SARAYEADTLPSKLTLKNVLF-REDCNA---DELIDVINANRVYLPCIYAYNKIDQISIEEVDRIA-- 108 (188)
Q Consensus 47 ------------~~~a~~~~~~~~~i~~ADvvl-~~D~s~---dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~l~-- 108 (188)
.+.++.-..+...+..||+++ ++|++. ++....+... ..+|+++|+||+|+.+......+.
T Consensus 276 liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l-~~~piivV~NK~Dl~~~~~~~~~~~~ 354 (462)
T 3geh_A 276 VLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV-KHRPLILVMNKIDLVEKQLITSLEYP 354 (462)
T ss_dssp ECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHH-TTSCEEEEEECTTSSCGGGSTTCCCC
T ss_pred EEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhc-cCCcEEEEEECCCCCcchhhHHHHHh
Confidence 011110011122478899998 888762 2222222221 247999999999998654332221
Q ss_pred -cCCCEEEEeccccccHHHHHHHHHHhccc
Q psy7063 109 -RQPNSVVVSCNMKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 109 -~~~~~vpISA~~~~gld~L~~~I~~~L~~ 137 (188)
...+++++||++|.|+++|.+.|.+.+..
T Consensus 355 ~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 355 ENITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp TTCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 22458999999999999999999998753
No 11
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.76 E-value=2.2e-08 Score=90.34 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh---cccceeEEEccCC---c--cchhchhhH--H------------------------
Q psy7063 3 ILEKISEIEKEIARTQKNKVLA---YCWSKGTFQSYTS---S--INRHYYYKS--A------------------------ 48 (188)
Q Consensus 3 i~~~i~~~e~e~~~~~~~~~~~---~~~~~~~~~~~~~---~--ln~~l~~~~--~------------------------ 48 (188)
+.+++..|..|++.+.+..... +.-.+++|+|+|| | +|+...... .
T Consensus 216 i~~~~~~l~~eL~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l 295 (482)
T 1xzp_A 216 VVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRI 295 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEE
Confidence 5678899999988876554332 2245788999885 2 666221110 0
Q ss_pred ------H-HH---------HhhhhhcccceeeEEE-EecCCch---HHHHHHHhcCCCCcEEEEEecCCCCCh---HHHH
Q psy7063 49 ------R-AY---------EADTLPSKLTLKNVLF-REDCNAD---ELIDVINANRVYLPCIYAYNKIDQISI---EEVD 105 (188)
Q Consensus 49 ------~-a~---------~~~~~~~~i~~ADvvl-~~D~s~d---d~~~~l~~~~~~kP~IlV~NKiDl~~~---e~l~ 105 (188)
. ++ ...+ ..+..||++| ++|++.. +..+.+... ..+|+++|+||+|+.+. +++.
T Consensus 296 ~DTaG~~~~~~~~ve~~gi~~~~--~~~~~aD~vl~VvD~s~~~s~~~~~il~~l-~~~piivV~NK~DL~~~~~~~~~~ 372 (482)
T 1xzp_A 296 VDTAGVRSETNDLVERLGIERTL--QEIEKADIVLFVLDASSPLDEEDRKILERI-KNKRYLVVINKVDVVEKINEEEIK 372 (482)
T ss_dssp EESSCCCSSCCTTCCCCCHHHHH--HHHHHCSEEEEEEETTSCCCHHHHHHHHHH-TTSSEEEEEEECSSCCCCCHHHHH
T ss_pred EECCCccccchhhHHHHHHHHHH--HHhhcccEEEEEecCCCCCCHHHHHHHHHh-cCCCEEEEEECcccccccCHHHHH
Confidence 0 00 0111 2367899998 8887632 112222222 36899999999999743 3333
Q ss_pred HHhcC-CCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 106 RIARQ-PNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 106 ~l~~~-~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
.+... .+++++||++|.|+++|.+.|.+.+.
T Consensus 373 ~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 373 NKLGTDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp HHHTCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred HHhcCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 33222 35899999999999999999998654
No 12
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.68 E-value=3.8e-08 Score=83.40 Aligned_cols=106 Identities=10% Similarity=0.063 Sum_probs=70.3
Q ss_pred eeEEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCc----hH--HHHHHHhcCCCCcEEEEEecCCCCCh
Q psy7063 29 KGTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNA----DE--LIDVINANRVYLPCIYAYNKIDQISI 101 (188)
Q Consensus 29 ~~~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~----dd--~~~~l~~~~~~kP~IlV~NKiDl~~~ 101 (188)
++.|++.|+.-. +++.+++++.......+.+||+++ ++|++. .+ +.+.+......+|+++|+||+|+.+.
T Consensus 56 ~l~l~DTpG~~~---~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 56 QIVFVDTPGLHK---PMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY 132 (301)
T ss_dssp EEEEEECCCCCC---CCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred EEEEecCccccc---hhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCc
Confidence 356777665221 223555555555556789999998 888762 11 22333322126899999999999854
Q ss_pred HH-H-HHHh---cCCCEEEEeccccccHHHHHHHHHHhccc
Q psy7063 102 EE-V-DRIA---RQPNSVVVSCNMKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 102 e~-l-~~l~---~~~~~vpISA~~~~gld~L~~~I~~~L~~ 137 (188)
.. + +.+. .+.+++|+||++|.|+++|.+.|.+.++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 133 PEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred hHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 33 3 2121 33458999999999999999999998764
No 13
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.63 E-value=1.1e-07 Score=80.48 Aligned_cols=107 Identities=22% Similarity=0.205 Sum_probs=69.8
Q ss_pred eEEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCc---hHHHHH-HHh-cCCCCcEEEEEecCCCC-ChH
Q psy7063 30 GTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNA---DELIDV-INA-NRVYLPCIYAYNKIDQI-SIE 102 (188)
Q Consensus 30 ~~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~---dd~~~~-l~~-~~~~kP~IlV~NKiDl~-~~e 102 (188)
+.|++.|+..... ....++++|.......+.+||+++ ++|++. .+.... +.. ....+|+++|+||+|+. +.+
T Consensus 61 i~lvDTPG~~~~~-~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~ 139 (308)
T 3iev_A 61 IIFLDTPGIYEPK-KSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAK 139 (308)
T ss_dssp EEEEECCCCCCCC-TTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGG
T ss_pred EEEEECcCCCccc-cchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHH
Confidence 4566666521111 124455555555556788999998 888763 111222 221 12468999999999997 443
Q ss_pred HH----HHHh----cCCCEEEEeccccccHHHHHHHHHHhccc
Q psy7063 103 EV----DRIA----RQPNSVVVSCNMKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 103 ~l----~~l~----~~~~~vpISA~~~~gld~L~~~I~~~L~~ 137 (188)
.+ ..+. .+.+++++||++|.|+++|.+.|.+.+..
T Consensus 140 ~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 140 NVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp GGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred HHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 32 2222 24579999999999999999999998863
No 14
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.57 E-value=1.8e-07 Score=84.20 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=54.7
Q ss_pred ccceeeEEE-EecCCc---hHHHHHHH-hcCCCCcEEEEEecCCCCChHHHH-------HH-hc-----CCCEEEEeccc
Q psy7063 59 KLTLKNVLF-REDCNA---DELIDVIN-ANRVYLPCIYAYNKIDQISIEEVD-------RI-AR-----QPNSVVVSCNM 120 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~---dd~~~~l~-~~~~~kP~IlV~NKiDl~~~e~l~-------~l-~~-----~~~~vpISA~~ 120 (188)
.+..||+++ ++|++. ++..+.+. ......|.|+|+||+|+.+.+.++ .+ .. ..+++++||++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~ 172 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT 172 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcC
Confidence 478899997 888864 32222221 122468899999999998643221 11 11 23689999999
Q ss_pred cccHHHHHHHHHHhcc
Q psy7063 121 KLNLDYLLDIIWLYLS 136 (188)
Q Consensus 121 ~~gld~L~~~I~~~L~ 136 (188)
|.|+++|.+.|.+.++
T Consensus 173 g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 173 GFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhc
Confidence 9999999999999776
No 15
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.55 E-value=1.6e-06 Score=74.70 Aligned_cols=76 Identities=24% Similarity=0.278 Sum_probs=52.1
Q ss_pred ceeeEEE-EecCCch------HHHHHH---HhcCCCCcEEEEEecCCCCChHHHHHH----h-cCCCEEEEeccccccHH
Q psy7063 61 TLKNVLF-REDCNAD------ELIDVI---NANRVYLPCIYAYNKIDQISIEEVDRI----A-RQPNSVVVSCNMKLNLD 125 (188)
Q Consensus 61 ~~ADvvl-~~D~s~d------d~~~~l---~~~~~~kP~IlV~NKiDl~~~e~l~~l----~-~~~~~vpISA~~~~gld 125 (188)
..||.++ ++|++.. +....+ ......+|+++|+||+|+.....++.. . ...+++++||++|.|++
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~ 324 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGID 324 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHH
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHH
Confidence 3588887 8887531 112222 111127999999999999875443222 1 22358999999999999
Q ss_pred HHHHHHHHhcc
Q psy7063 126 YLLDIIWLYLS 136 (188)
Q Consensus 126 ~L~~~I~~~L~ 136 (188)
+|.+.|.+.+.
T Consensus 325 ~l~~~i~~~l~ 335 (357)
T 2e87_A 325 LVKEEIIKTLR 335 (357)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988774
No 16
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.43 E-value=2.4e-07 Score=77.91 Aligned_cols=77 Identities=16% Similarity=0.114 Sum_probs=54.7
Q ss_pred cceeeEEE-EecCCchHHH--HHHHhcCCCCcEEEEEecCCCCChHHHHHH----hc-CCCEEEEeccccccHHHHHHHH
Q psy7063 60 LTLKNVLF-REDCNADELI--DVINANRVYLPCIYAYNKIDQISIEEVDRI----AR-QPNSVVVSCNMKLNLDYLLDII 131 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~--~~l~~~~~~kP~IlV~NKiDl~~~e~l~~l----~~-~~~~vpISA~~~~gld~L~~~I 131 (188)
+.+||+++ ++|+..+... ..+......+|.++|+||+|+.+.+..+.+ .. ..+++++||.++.|+++|.+.+
T Consensus 21 l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i 100 (282)
T 1puj_A 21 LKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPAS 100 (282)
T ss_dssp GGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHH
T ss_pred HhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHH
Confidence 89999998 8897632110 112222257999999999999876443322 12 2358999999999999999988
Q ss_pred HHhcc
Q psy7063 132 WLYLS 136 (188)
Q Consensus 132 ~~~L~ 136 (188)
.+.+.
T Consensus 101 ~~~l~ 105 (282)
T 1puj_A 101 KEILQ 105 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 17
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.42 E-value=8.1e-07 Score=67.96 Aligned_cols=77 Identities=13% Similarity=0.027 Sum_probs=53.1
Q ss_pred ccceeeEEE-EecCCch------HHHH----HHHh---cCCCCcEEEEEecCCCCCh---HHHHHHhc---CCCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNAD------ELID----VINA---NRVYLPCIYAYNKIDQISI---EEVDRIAR---QPNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d------d~~~----~l~~---~~~~kP~IlV~NKiDl~~~---e~l~~l~~---~~~~vpISA 118 (188)
.+.+||+++ ++|++.. +..+ .+.. .....|+++|+||+|+... +++..+.. ...++++||
T Consensus 94 ~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (198)
T 3t1o_A 94 ILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVA 173 (198)
T ss_dssp HTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBG
T ss_pred HHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEec
Confidence 367899997 8898732 1111 1211 1246899999999998643 33443432 226899999
Q ss_pred cccccHHHHHHHHHHhc
Q psy7063 119 NMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L 135 (188)
++|.|+++|.+.|.+.+
T Consensus 174 ~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 174 TEGKGVFETLKEVSRLV 190 (198)
T ss_dssp GGTBTHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999999888764
No 18
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.39 E-value=3.2e-07 Score=81.12 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=57.3
Q ss_pred HHhhhhhcccceeeEEE-EecCCc----hH--HHHHHHhcCCCCcEEEEEecCCCCChH-HHHHHh--cCCCEEEEeccc
Q psy7063 51 YEADTLPSKLTLKNVLF-REDCNA----DE--LIDVINANRVYLPCIYAYNKIDQISIE-EVDRIA--RQPNSVVVSCNM 120 (188)
Q Consensus 51 ~~~~~~~~~i~~ADvvl-~~D~s~----dd--~~~~l~~~~~~kP~IlV~NKiDl~~~e-~l~~l~--~~~~~vpISA~~ 120 (188)
.+..++...+.+||+++ ++|++. .+ +.+.+ .+..+|+++|+||+|+.... ....+. .+.+++++||++
T Consensus 71 ~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l--~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~ 148 (436)
T 2hjg_A 71 QIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKIL--YRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTH 148 (436)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH--TTCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTT
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH--HHcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcC
Confidence 34444455689999998 888752 12 22223 34579999999999987432 121122 234689999999
Q ss_pred cccHHHHHHHHHHhcc
Q psy7063 121 KLNLDYLLDIIWLYLS 136 (188)
Q Consensus 121 ~~gld~L~~~I~~~L~ 136 (188)
|.|+++|.+.|.+.+.
T Consensus 149 g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 149 GLGLGDLLDAVAEHFK 164 (436)
T ss_dssp TBTHHHHHHHHHHTGG
T ss_pred CCChHHHHHHHHHhcC
Confidence 9999999999999885
No 19
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.38 E-value=1.1e-06 Score=67.87 Aligned_cols=80 Identities=14% Similarity=0.026 Sum_probs=55.1
Q ss_pred hcccceeeEEE-EecCCchHHH--------HHHHhcCCCCcEEEEEecCCCCCh-------HHHHHHh---cCCCEEEEe
Q psy7063 57 PSKLTLKNVLF-REDCNADELI--------DVINANRVYLPCIYAYNKIDQISI-------EEVDRIA---RQPNSVVVS 117 (188)
Q Consensus 57 ~~~i~~ADvvl-~~D~s~dd~~--------~~l~~~~~~kP~IlV~NKiDl~~~-------e~l~~l~---~~~~~vpIS 117 (188)
...+.+||+++ ++|++..+-. ..+.......|+++|+||+|+.+. ++...+. ....++++|
T Consensus 89 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 168 (194)
T 3reg_A 89 PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEAS 168 (194)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECB
T ss_pred HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEee
Confidence 34578899997 8898743211 122222346899999999998632 2222232 233489999
Q ss_pred ccccccHHHHHHHHHHhcc
Q psy7063 118 CNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 118 A~~~~gld~L~~~I~~~L~ 136 (188)
|++|.|+++|.+.|.+.+.
T Consensus 169 a~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 169 SVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988753
No 20
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.38 E-value=1.6e-06 Score=73.22 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=71.0
Q ss_pred eEEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCCc---hH--HHHHHHhcCCCCcEEEEEecCCCCC-hH
Q psy7063 30 GTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCNA---DE--LIDVINANRVYLPCIYAYNKIDQIS-IE 102 (188)
Q Consensus 30 ~~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~---dd--~~~~l~~~~~~kP~IlV~NKiDl~~-~e 102 (188)
+.|+..|+...+ ++..+++.+...+...+..||+++ ++|++. .+ +.+.+ ....+|.++|+||+|+.. .+
T Consensus 58 i~~iDTpG~~~~--~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l--~~~~~P~ilvlNK~D~~~~~~ 133 (301)
T 1ega_A 58 AIYVDTPGLHME--EKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKL--REGKAPVILAVNKVDNVQEKA 133 (301)
T ss_dssp EEEESSSSCCHH--HHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHH--HSSSSCEEEEEESTTTCCCHH
T ss_pred EEEEECcCCCcc--chhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHH--HhcCCCEEEEEECcccCccHH
Confidence 456665542211 334566667777777899999997 788642 11 22222 234699999999999986 33
Q ss_pred HH----HHHhc---CCCEEEEeccccccHHHHHHHHHHhcccc
Q psy7063 103 EV----DRIAR---QPNSVVVSCNMKLNLDYLLDIIWLYLSLI 138 (188)
Q Consensus 103 ~l----~~l~~---~~~~vpISA~~~~gld~L~~~I~~~L~~i 138 (188)
.+ ..+.. +..++|+||+++.|+++|.+.|.+.++.-
T Consensus 134 ~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 134 DLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp HHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcC
Confidence 32 22322 23589999999999999999999988743
No 21
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.37 E-value=5.2e-07 Score=69.53 Aligned_cols=79 Identities=11% Similarity=0.006 Sum_probs=53.3
Q ss_pred cccceeeEEE-EecCCchH----HHHHHHh-cC-----------CCCcEEEEEecCCCCCh---HHHH-HHh-----c--
Q psy7063 58 SKLTLKNVLF-REDCNADE----LIDVINA-NR-----------VYLPCIYAYNKIDQISI---EEVD-RIA-----R-- 109 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd----~~~~l~~-~~-----------~~kP~IlV~NKiDl~~~---e~l~-~l~-----~-- 109 (188)
..+.+||+++ ++|++..+ ....+.. .. ..+|+++|+||+|+... +++. .+. .
T Consensus 82 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
T 4bas_A 82 TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDH 161 (199)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTS
T ss_pred HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCC
Confidence 3478899998 88987432 1111111 11 26899999999999754 3332 111 1
Q ss_pred CCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 110 QPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 110 ~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
...++++||++|.|+++|.+.|.+.+.
T Consensus 162 ~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 162 PFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred eeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 124789999999999999999988764
No 22
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.36 E-value=1.2e-06 Score=66.58 Aligned_cols=79 Identities=14% Similarity=-0.022 Sum_probs=53.5
Q ss_pred cccceeeEEE-EecCCch----HHHHHHHh---c--CCCCcEEEEEecCCCCCh---HHHHHHhc---C----CCEEEEe
Q psy7063 58 SKLTLKNVLF-REDCNAD----ELIDVINA---N--RVYLPCIYAYNKIDQISI---EEVDRIAR---Q----PNSVVVS 117 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d----d~~~~l~~---~--~~~kP~IlV~NKiDl~~~---e~l~~l~~---~----~~~vpIS 117 (188)
..+.+||+++ ++|++.. +....+.. . ...+|+++|+||+|+.+. +++..... . ..++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 3478899997 8887632 22222221 1 246899999999998743 33332211 1 1478999
Q ss_pred ccccccHHHHHHHHHHhcc
Q psy7063 118 CNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 118 A~~~~gld~L~~~I~~~L~ 136 (188)
|++|.|+++|.+.|.+.+.
T Consensus 161 a~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999987653
No 23
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.36 E-value=7.3e-07 Score=66.13 Aligned_cols=76 Identities=21% Similarity=0.261 Sum_probs=53.1
Q ss_pred ccceeeEEE-EecCCc--hH----HHHHHHhcCCCCcEEEEEecCCCCChH-HHHHHh--cCCCEEEEeccccccHHHHH
Q psy7063 59 KLTLKNVLF-REDCNA--DE----LIDVINANRVYLPCIYAYNKIDQISIE-EVDRIA--RQPNSVVVSCNMKLNLDYLL 128 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~--dd----~~~~l~~~~~~kP~IlV~NKiDl~~~e-~l~~l~--~~~~~vpISA~~~~gld~L~ 128 (188)
.+..+|+++ ++|++. .. +...+.. ...|+++|+||+|+.+.+ +...+. ....++++||++|.|+++|.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELL 153 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHH
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHH
Confidence 367899997 788763 11 2222222 468999999999997542 222232 23358999999999999999
Q ss_pred HHHHHhcc
Q psy7063 129 DIIWLYLS 136 (188)
Q Consensus 129 ~~I~~~L~ 136 (188)
+.|.+.++
T Consensus 154 ~~l~~~l~ 161 (161)
T 2dyk_A 154 EAIWERLP 161 (161)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhCc
Confidence 99988763
No 24
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.36 E-value=6.9e-07 Score=68.83 Aligned_cols=80 Identities=10% Similarity=0.050 Sum_probs=53.5
Q ss_pred cccceeeEEE-EecCCchH-HH---HHH---HhcC----CCCcEEEEEecCCCCCh---HHHHHHh---cC----CCEEE
Q psy7063 58 SKLTLKNVLF-REDCNADE-LI---DVI---NANR----VYLPCIYAYNKIDQISI---EEVDRIA---RQ----PNSVV 115 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd-~~---~~l---~~~~----~~kP~IlV~NKiDl~~~---e~l~~l~---~~----~~~vp 115 (188)
..+.+||+++ ++|++..+ +. ..+ .... ..+|+++|+||+|+... +++.... .+ ..+++
T Consensus 86 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T 2h57_A 86 HYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICA 165 (190)
T ss_dssp GGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEE
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEE
Confidence 3468899998 88987532 11 111 1111 46899999999999743 3332221 11 14788
Q ss_pred EeccccccHHHHHHHHHHhccc
Q psy7063 116 VSCNMKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 116 ISA~~~~gld~L~~~I~~~L~~ 137 (188)
+||++|.|+++|.+.|.+.+..
T Consensus 166 ~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 166 SDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp CBTTTTBTHHHHHHHHHHHC--
T ss_pred ccCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999987753
No 25
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.34 E-value=5.2e-07 Score=79.82 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=56.6
Q ss_pred hhhcccceeeEEE-EecCCc----hH--HHHHHHhcCCCCcEEEEEecCCCCCh--HHH-HHHh--cCCCEEEEeccccc
Q psy7063 55 TLPSKLTLKNVLF-REDCNA----DE--LIDVINANRVYLPCIYAYNKIDQISI--EEV-DRIA--RQPNSVVVSCNMKL 122 (188)
Q Consensus 55 ~~~~~i~~ADvvl-~~D~s~----dd--~~~~l~~~~~~kP~IlV~NKiDl~~~--e~l-~~l~--~~~~~vpISA~~~~ 122 (188)
.+...+.+||++| ++|++. .+ +.+.+. ...+|+++|+||+|+... .+. ..+. .+.+++++||++|.
T Consensus 74 ~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~--~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~ 151 (439)
T 1mky_A 74 VTLNMIREADLVLFVVDGKRGITKEDESLADFLR--KSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNI 151 (439)
T ss_dssp HHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHH--HHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTB
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH--HcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 3345689999998 888752 12 223332 246999999999998633 122 3333 23468999999999
Q ss_pred cHHHHHHHHHHhcc
Q psy7063 123 NLDYLLDIIWLYLS 136 (188)
Q Consensus 123 gld~L~~~I~~~L~ 136 (188)
|+++|.+.|.+.+.
T Consensus 152 gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 152 NLDTMLETIIKKLE 165 (439)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcc
Confidence 99999999998875
No 26
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.34 E-value=1.9e-06 Score=66.13 Aligned_cols=78 Identities=12% Similarity=0.015 Sum_probs=53.3
Q ss_pred ccceeeEEE-EecCCchH----HH---HHHHh-cCCCCcEEEEEecCCCCChH-----HHHHHh-c-CCCEEEEeccccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LI---DVINA-NRVYLPCIYAYNKIDQISIE-----EVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~---~~l~~-~~~~kP~IlV~NKiDl~~~e-----~l~~l~-~-~~~~vpISA~~~~ 122 (188)
.+..+|+++ ++|++..+ +. ..+.. ....+|+++|+||+|+.+.. ....+. . ...++++||++|.
T Consensus 85 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (196)
T 3tkl_A 85 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNAT 164 (196)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCT
T ss_pred HHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 357799997 88987532 11 12221 22368999999999987432 222232 1 2358999999999
Q ss_pred cHHHHHHHHHHhcc
Q psy7063 123 NLDYLLDIIWLYLS 136 (188)
Q Consensus 123 gld~L~~~I~~~L~ 136 (188)
|+++|.+.|.+.+.
T Consensus 165 gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 165 NVEQSFMTMAAEIK 178 (196)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999988887764
No 27
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.33 E-value=1.9e-06 Score=66.86 Aligned_cols=77 Identities=16% Similarity=0.061 Sum_probs=51.9
Q ss_pred cccceeeEEE-EecCCchH----HHHHHH---h--cCCCCcEEEEEecCCCCC---hHHHHHHhcC--------------
Q psy7063 58 SKLTLKNVLF-REDCNADE----LIDVIN---A--NRVYLPCIYAYNKIDQIS---IEEVDRIARQ-------------- 110 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd----~~~~l~---~--~~~~kP~IlV~NKiDl~~---~e~l~~l~~~-------------- 110 (188)
..+.+||+++ ++|++..+ ....+. . .....|+++|+||+|+.. .+++......
T Consensus 86 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRP 165 (190)
T ss_dssp GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCC
T ss_pred HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccce
Confidence 3467899997 88987432 111111 1 124689999999999864 2334332211
Q ss_pred CCEEEEeccccccHHHHHHHHHHh
Q psy7063 111 PNSVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 111 ~~~vpISA~~~~gld~L~~~I~~~ 134 (188)
..++++||++|.|++++.+.|.+.
T Consensus 166 ~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 166 VEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHTT
T ss_pred EEEEEeECCcCCCHHHHHHHHHhh
Confidence 137889999999999999988765
No 28
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.33 E-value=9.1e-07 Score=69.48 Aligned_cols=80 Identities=13% Similarity=0.017 Sum_probs=53.7
Q ss_pred hhcccceeeEEE-EecCCchHH--------HHHHHhcCCCCcEEEEEecCCCCChHH-----------------HHHHh-
Q psy7063 56 LPSKLTLKNVLF-REDCNADEL--------IDVINANRVYLPCIYAYNKIDQISIEE-----------------VDRIA- 108 (188)
Q Consensus 56 ~~~~i~~ADvvl-~~D~s~dd~--------~~~l~~~~~~kP~IlV~NKiDl~~~e~-----------------l~~l~- 108 (188)
....+.+||+++ ++|++..+- ...+......+|+++|+||+|+.+... ...+.
T Consensus 95 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (204)
T 4gzl_A 95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 174 (204)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHH
Confidence 334578899998 889874321 112222224799999999999864321 11111
Q ss_pred --cCCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 109 --RQPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 109 --~~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
....++++||++|.|+++|.+.|.+.+
T Consensus 175 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 175 EIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred hcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 122489999999999999999988753
No 29
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.32 E-value=1.3e-06 Score=66.78 Aligned_cols=79 Identities=11% Similarity=-0.032 Sum_probs=53.3
Q ss_pred cccceeeEEE-EecCCchH-H---HHHHH---hc--CCCCcEEEEEecCCCCCh---HHHHHHhc-------CCCEEEEe
Q psy7063 58 SKLTLKNVLF-REDCNADE-L---IDVIN---AN--RVYLPCIYAYNKIDQISI---EEVDRIAR-------QPNSVVVS 117 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd-~---~~~l~---~~--~~~kP~IlV~NKiDl~~~---e~l~~l~~-------~~~~vpIS 117 (188)
..+.+||+++ ++|++..+ + ...+. .. ....|+++|+||+|+.+. +++..... ...++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence 4478899997 88987432 1 11111 11 146899999999999753 22322111 11478899
Q ss_pred ccccccHHHHHHHHHHhcc
Q psy7063 118 CNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 118 A~~~~gld~L~~~I~~~L~ 136 (188)
|++|.|+++|.+.|.+.+.
T Consensus 161 a~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 161 AVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 30
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.32 E-value=8.8e-07 Score=66.02 Aligned_cols=78 Identities=15% Similarity=-0.054 Sum_probs=52.0
Q ss_pred ccceeeEEE-EecCCchH----HHHHHHh-----cCCCCcEEEEEecCCCCCh---HHHHHHh--c----C-CCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNADE----LIDVINA-----NRVYLPCIYAYNKIDQISI---EEVDRIA--R----Q-PNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~~l~~-----~~~~kP~IlV~NKiDl~~~---e~l~~l~--~----~-~~~vpISA 118 (188)
.+.+||+++ ++|++..+ ....+.. .....|+++|+||+|+.+. +++.... . . ..++++||
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCA 143 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEccc
Confidence 368899997 88987432 1222211 1136899999999999753 2332111 1 0 13788999
Q ss_pred cccccHHHHHHHHHHhcc
Q psy7063 119 NMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L~ 136 (188)
++|.|+++|.+.|.+.+.
T Consensus 144 ~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 144 TSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp TTTBTHHHHHHHHHHHC-
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 999999999999988763
No 31
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.31 E-value=9.4e-07 Score=67.66 Aligned_cols=77 Identities=12% Similarity=-0.057 Sum_probs=51.5
Q ss_pred cccceeeEEE-EecCCch----HHHHHHH---hc--CCCCcEEEEEecCCCCCh---HHHHHHh---cC----CCEEEEe
Q psy7063 58 SKLTLKNVLF-REDCNAD----ELIDVIN---AN--RVYLPCIYAYNKIDQISI---EEVDRIA---RQ----PNSVVVS 117 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d----d~~~~l~---~~--~~~kP~IlV~NKiDl~~~---e~l~~l~---~~----~~~vpIS 117 (188)
..+.+||+++ ++|++.. +....+. .. ...+|+++|+||+|+... +++.... .. ..++++|
T Consensus 84 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 163 (181)
T 2h17_A 84 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 163 (181)
T ss_dssp GGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 3468899997 8888642 2222221 11 246899999999999752 3332221 11 1478999
Q ss_pred ccccccHHHHHHHHHHh
Q psy7063 118 CNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 118 A~~~~gld~L~~~I~~~ 134 (188)
|++|.|+++|.+.|.+.
T Consensus 164 a~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 164 ALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTTTBTHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHhh
Confidence 99999999999988764
No 32
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.31 E-value=3e-06 Score=66.53 Aligned_cols=79 Identities=9% Similarity=-0.006 Sum_probs=54.1
Q ss_pred cccceeeEEE-EecCCchHH----HHHHHhcC-----CCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccc
Q psy7063 58 SKLTLKNVLF-REDCNADEL----IDVINANR-----VYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNM 120 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~----~~~l~~~~-----~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~ 120 (188)
..+.+||+++ ++|++..+- ...+.... ..+|+++|+||+|+... ++...+. . ...++++||++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 182 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT 182 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence 3467899997 889875432 22222211 36899999999998642 2233332 1 23589999999
Q ss_pred cccHHHHHHHHHHhcc
Q psy7063 121 KLNLDYLLDIIWLYLS 136 (188)
Q Consensus 121 ~~gld~L~~~I~~~L~ 136 (188)
+.|+++|.+.|.+.+.
T Consensus 183 g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 183 GQNVEKAVETLLDLIM 198 (217)
T ss_dssp TBTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999887653
No 33
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.31 E-value=2.3e-06 Score=64.50 Aligned_cols=78 Identities=18% Similarity=0.069 Sum_probs=53.1
Q ss_pred ccceeeEEE-EecCCchHHH-------HHHHhcCCCCcEEEEEecCCCCCh-----HHHHHHh--cCCCEEEEecccccc
Q psy7063 59 KLTLKNVLF-REDCNADELI-------DVINANRVYLPCIYAYNKIDQISI-----EEVDRIA--RQPNSVVVSCNMKLN 123 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~-------~~l~~~~~~kP~IlV~NKiDl~~~-----e~l~~l~--~~~~~vpISA~~~~g 123 (188)
.+.++|+++ ++|++..+.. ..+.......|+++|+||+|+.+. ++...+. ....++++||++|.|
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVN 157 (181)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 467889997 8898743221 122222346899999999998642 2222222 123589999999999
Q ss_pred HHHHHHHHHHhcc
Q psy7063 124 LDYLLDIIWLYLS 136 (188)
Q Consensus 124 ld~L~~~I~~~L~ 136 (188)
+++|.+.|.+.+.
T Consensus 158 i~~l~~~l~~~~~ 170 (181)
T 3tw8_B 158 VEEMFNCITELVL 170 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 34
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.30 E-value=2.4e-06 Score=63.71 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=49.5
Q ss_pred ccceeeEEE-EecCCchHHH----H---HHHhc--CCCCcEEEEEecCCCCChH-----HHHHHh-c-CCCEEEEecccc
Q psy7063 59 KLTLKNVLF-REDCNADELI----D---VINAN--RVYLPCIYAYNKIDQISIE-----EVDRIA-R-QPNSVVVSCNMK 121 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~----~---~l~~~--~~~kP~IlV~NKiDl~~~e-----~l~~l~-~-~~~~vpISA~~~ 121 (188)
.+..+|+++ +.|++..+-. . .+... ...+|+++|+||+|+.+.. ....+. . ...++++||++|
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (166)
T 3q72_A 69 CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALH 148 (166)
T ss_dssp ----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGT
T ss_pred hhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCC
Confidence 357889887 7888743211 1 12111 1368999999999987432 222222 1 235899999999
Q ss_pred ccHHHHHHHHHHhcc
Q psy7063 122 LNLDYLLDIIWLYLS 136 (188)
Q Consensus 122 ~gld~L~~~I~~~L~ 136 (188)
.|+++|.+.|.+.+.
T Consensus 149 ~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 149 HNVQALFEGVVRQIR 163 (166)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 35
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.30 E-value=2.8e-06 Score=64.18 Aligned_cols=79 Identities=18% Similarity=0.118 Sum_probs=54.5
Q ss_pred cccceeeEEE-EecCCchHH----H---HHHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh--cCCCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNADEL----I---DVINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA--RQPNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~----~---~~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~--~~~~~vpISA~~~ 121 (188)
..+.++|+++ ++|++..+. . ..+.. ....+|+++|+||+|+.+. ++...+. ....++++||+++
T Consensus 79 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (180)
T 2g6b_A 79 AYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTG 158 (180)
T ss_dssp CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 4578899997 889875321 1 22222 2246899999999998742 2223232 1235899999999
Q ss_pred ccHHHHHHHHHHhcc
Q psy7063 122 LNLDYLLDIIWLYLS 136 (188)
Q Consensus 122 ~gld~L~~~I~~~L~ 136 (188)
.|+++|.+.|.+.+.
T Consensus 159 ~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 159 LNVDLAFTAIAKELK 173 (180)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 36
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.30 E-value=1.6e-06 Score=64.60 Aligned_cols=78 Identities=14% Similarity=0.049 Sum_probs=52.8
Q ss_pred ccceeeEEE-EecCCchH----HHH---HHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEeccccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LID---VINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMKL 122 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~---~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~~ 122 (188)
.+.+||+++ ++|++..+ ... .+.. .....|+++|+||+|+.+. ++...+. .. ..++++||++|.
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 154 (170)
T 1r2q_A 75 YYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSM 154 (170)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 367899997 88987432 111 1211 2246899999999998632 2222232 22 247899999999
Q ss_pred cHHHHHHHHHHhcc
Q psy7063 123 NLDYLLDIIWLYLS 136 (188)
Q Consensus 123 gld~L~~~I~~~L~ 136 (188)
|+++|.+.|.+.+.
T Consensus 155 gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 155 NVNEIFMAIAKKLP 168 (170)
T ss_dssp THHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988763
No 37
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.30 E-value=1.5e-06 Score=65.08 Aligned_cols=78 Identities=21% Similarity=0.147 Sum_probs=52.3
Q ss_pred cceeeEEE-EecCCchH----HH---HHHHhcC--CCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LI---DVINANR--VYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~---~~l~~~~--~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~ 122 (188)
+.+||+++ +.|++..+ +. ..+.... ..+|+++|+||+|+.+. ++...+. . ...++++||++|.
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (169)
T 3q85_A 73 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHH 152 (169)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred hccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCC
Confidence 45688887 78887532 11 1121111 26899999999998632 2223232 1 2357999999999
Q ss_pred cHHHHHHHHHHhccc
Q psy7063 123 NLDYLLDIIWLYLSL 137 (188)
Q Consensus 123 gld~L~~~I~~~L~~ 137 (188)
|+++|.+.+.+.+..
T Consensus 153 ~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 153 NTRELFEGAVRQIRL 167 (169)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999887643
No 38
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.29 E-value=3.8e-06 Score=64.70 Aligned_cols=78 Identities=12% Similarity=0.091 Sum_probs=53.0
Q ss_pred cccceeeEEE-EecCCchH----H----HHHHHhcCCCCcEEEEEecCCCCChH-----------------HHHHHh---
Q psy7063 58 SKLTLKNVLF-REDCNADE----L----IDVINANRVYLPCIYAYNKIDQISIE-----------------EVDRIA--- 108 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd----~----~~~l~~~~~~kP~IlV~NKiDl~~~e-----------------~l~~l~--- 108 (188)
..+.+||+++ ++|++..+ . ...+.......|+++|+||+|+.+.. +...+.
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (194)
T 2atx_A 85 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI 164 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHc
Confidence 3477899997 88987432 1 12222222378999999999997421 112221
Q ss_pred cCCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 109 RQPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 109 ~~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
....++++||++|.|+++|.+.|.+.+
T Consensus 165 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 165 GACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 223689999999999999999988754
No 39
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.29 E-value=1.5e-06 Score=66.98 Aligned_cols=78 Identities=17% Similarity=0.123 Sum_probs=52.3
Q ss_pred ccceeeEEE-EecCCchH----HHHHHHh--c---CCCCcEEEEEecCCCCCh---HHHHH-Hh-c-----CCCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNADE----LIDVINA--N---RVYLPCIYAYNKIDQISI---EEVDR-IA-R-----QPNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~~l~~--~---~~~kP~IlV~NKiDl~~~---e~l~~-l~-~-----~~~~vpISA 118 (188)
.+.+||+++ ++|++..+ ....+.. . ....|+++|+||+|+... +++.. +. . ...++++||
T Consensus 87 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 166 (188)
T 1zd9_A 87 YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISC 166 (188)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred HHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEEC
Confidence 357899997 88987432 1111111 1 146899999999999743 22221 11 1 113689999
Q ss_pred cccccHHHHHHHHHHhcc
Q psy7063 119 NMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L~ 136 (188)
++|.|+++|.+.|.+.+.
T Consensus 167 ~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 167 KEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp TTCTTHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 40
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.29 E-value=2.9e-06 Score=66.34 Aligned_cols=77 Identities=17% Similarity=0.169 Sum_probs=52.1
Q ss_pred ccceeeEEE-EecCCchH----HHHHHHh-----cCCCCcEEEEEecCCCCC---hHHHHHHhc----------------
Q psy7063 59 KLTLKNVLF-REDCNADE----LIDVINA-----NRVYLPCIYAYNKIDQIS---IEEVDRIAR---------------- 109 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~~l~~-----~~~~kP~IlV~NKiDl~~---~e~l~~l~~---------------- 109 (188)
.+.+||+++ ++|++..+ ....+.. ....+|+++|+||+|+.. .+++.....
T Consensus 89 ~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (198)
T 1f6b_A 89 YLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKEL 168 (198)
T ss_dssp GGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccc
Confidence 467899997 88987432 1121111 124689999999999864 334433221
Q ss_pred ---CCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 110 ---QPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 110 ---~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
...++++||++|.|+++|.+.|.+.+
T Consensus 169 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 169 NARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 01378899999999999999988764
No 41
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.29 E-value=1.9e-06 Score=64.99 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=54.5
Q ss_pred cccceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEEEEEecCCCCCh--HHHH-HHhc-------C---CCEEEEecc
Q psy7063 58 SKLTLKNVLF-REDCNA---DELIDVINA-NRVYLPCIYAYNKIDQISI--EEVD-RIAR-------Q---PNSVVVSCN 119 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~IlV~NKiDl~~~--e~l~-~l~~-------~---~~~vpISA~ 119 (188)
..+..+|+++ ++|++. .+..+.+.. .....|+++|+||+|+... +++. .+.. . ..++++||+
T Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 74 RGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 3467889987 788764 333333322 2246899999999999753 3332 2211 1 147899999
Q ss_pred ccccHHHHHHHHHHhccc
Q psy7063 120 MKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~~ 137 (188)
+|.|+++|.+.|.+.+..
T Consensus 154 ~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhh
Confidence 999999999999887653
No 42
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.29 E-value=2.6e-06 Score=63.53 Aligned_cols=77 Identities=16% Similarity=0.067 Sum_probs=52.6
Q ss_pred cceeeEEE-EecCCchHH----H---HHHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADEL----I---DVINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~----~---~~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~g 123 (188)
+.++|+++ ++|++..+. . ..+.. .....|+++|+||+|+.+. ++...+. . ...++++||++|.|
T Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (170)
T 1z0j_A 76 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN 155 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC
Confidence 57789887 889874321 1 22222 2346899999999998642 2222232 1 23589999999999
Q ss_pred HHHHHHHHHHhcc
Q psy7063 124 LDYLLDIIWLYLS 136 (188)
Q Consensus 124 ld~L~~~I~~~L~ 136 (188)
+++|.+.|.+.+.
T Consensus 156 i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 156 INELFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
No 43
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.28 E-value=2e-06 Score=64.29 Aligned_cols=78 Identities=13% Similarity=-0.025 Sum_probs=52.4
Q ss_pred ccceeeEEE-EecCCch----HHHHHHHh---c--CCCCcEEEEEecCCCCCh---HHHHH-Hh-c-C----CCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNAD----ELIDVINA---N--RVYLPCIYAYNKIDQISI---EEVDR-IA-R-Q----PNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d----d~~~~l~~---~--~~~kP~IlV~NKiDl~~~---e~l~~-l~-~-~----~~~vpISA 118 (188)
.+.++|+++ ++|++.. .....+.. . ...+|+++|+||+|+.+. +++.. +. . . ..++++||
T Consensus 71 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 150 (171)
T 1upt_A 71 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSA 150 (171)
T ss_dssp GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcC
Confidence 467899997 8887632 22222211 1 146899999999999753 23322 21 1 1 14789999
Q ss_pred cccccHHHHHHHHHHhcc
Q psy7063 119 NMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L~ 136 (188)
++|.|+++|.+.|.+.+.
T Consensus 151 ~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 151 TKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 999999999999987753
No 44
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.28 E-value=3.2e-06 Score=63.88 Aligned_cols=77 Identities=16% Similarity=0.032 Sum_probs=53.0
Q ss_pred cceeeEEE-EecCCchHH----HH---HHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADEL----ID---VINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~----~~---~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~~g 123 (188)
+.+||+++ ++|++...- .. .+.. .....|+++|+||+|+.+. ++...+. .. ..++++||++|.|
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 82 YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATN 161 (181)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 67789997 889874321 11 1221 1236899999999998642 2233332 22 2489999999999
Q ss_pred HHHHHHHHHHhcc
Q psy7063 124 LDYLLDIIWLYLS 136 (188)
Q Consensus 124 ld~L~~~I~~~L~ 136 (188)
+++|.+.|.+.+.
T Consensus 162 i~~l~~~l~~~~~ 174 (181)
T 2efe_B 162 VKEIFYEIARRLP 174 (181)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 45
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.27 E-value=4.3e-06 Score=65.77 Aligned_cols=77 Identities=14% Similarity=0.048 Sum_probs=52.5
Q ss_pred cceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEEEEEecCCCCChHHH----H----HHhc--------CCCEEEEec
Q psy7063 60 LTLKNVLF-REDCNA---DELIDVINA-NRVYLPCIYAYNKIDQISIEEV----D----RIAR--------QPNSVVVSC 118 (188)
Q Consensus 60 i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~IlV~NKiDl~~~e~l----~----~l~~--------~~~~vpISA 118 (188)
...+|+++ ++|++. +.....+.. ....+|+++|+||+|+.+..++ + .+.. ..+++++||
T Consensus 113 ~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA 192 (223)
T 4dhe_A 113 RPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSA 192 (223)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBT
T ss_pred CcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeec
Confidence 45588887 788762 221222211 2246899999999999865432 1 1111 125899999
Q ss_pred cccccHHHHHHHHHHhcc
Q psy7063 119 NMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L~ 136 (188)
++|.|+++|.+.|.+.+.
T Consensus 193 ~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 193 LKRTGLDDAHALIESWLR 210 (223)
T ss_dssp TTTBSHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHhcC
Confidence 999999999999998875
No 46
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.26 E-value=2.2e-06 Score=65.18 Aligned_cols=78 Identities=12% Similarity=0.033 Sum_probs=53.4
Q ss_pred cccceeeEEE-EecCCchHH----H---HHHHhcC--CCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccc
Q psy7063 58 SKLTLKNVLF-REDCNADEL----I---DVINANR--VYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNM 120 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~----~---~~l~~~~--~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~ 120 (188)
..+.+||+++ ++|++..+- . ..+.... ..+|+++|+||+|+.+. +++..+. . ...++++||++
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 168 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAAN 168 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred HHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCC
Confidence 3478899997 889874321 1 1222111 46899999999998642 2233332 1 23589999999
Q ss_pred cccHHHHHHHHHHhc
Q psy7063 121 KLNLDYLLDIIWLYL 135 (188)
Q Consensus 121 ~~gld~L~~~I~~~L 135 (188)
+.|+++|.+.|.+.+
T Consensus 169 ~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 169 GTNISHAIEMLLDLI 183 (195)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999888765
No 47
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.26 E-value=3.3e-06 Score=64.49 Aligned_cols=75 Identities=17% Similarity=0.257 Sum_probs=51.4
Q ss_pred cceeeEEE-EecCCc---hH---HHHHHHhcCCCCcEEEEEecCCCCChHHH----HHH---h-c--CCCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNA---DE---LIDVINANRVYLPCIYAYNKIDQISIEEV----DRI---A-R--QPNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~---dd---~~~~l~~~~~~kP~IlV~NKiDl~~~e~l----~~l---~-~--~~~~vpISA~~~~ 122 (188)
...+|+++ ++|++. .. +...+. ....|+++|+||+|+.+.++. +.+ . . ...++++||++|.
T Consensus 102 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 179 (195)
T 3pqc_A 102 RWSLQMVFLLVDGRIPPQDSDLMMVEWMK--SLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGE 179 (195)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHH--HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCT
T ss_pred CcCceEEEEEecCCCCCCHHHHHHHHHHH--HcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence 35568887 788652 11 222232 236899999999999754322 111 1 2 1368999999999
Q ss_pred cHHHHHHHHHHhcc
Q psy7063 123 NLDYLLDIIWLYLS 136 (188)
Q Consensus 123 gld~L~~~I~~~L~ 136 (188)
|+++|.+.|.+.+.
T Consensus 180 gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 180 GISELLDLISTLLK 193 (195)
T ss_dssp THHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988764
No 48
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.26 E-value=4.3e-06 Score=63.00 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=52.9
Q ss_pred cccceeeEEE-EecCCchHH-------HHHHHh-c----CCCCcEEEEEecCCCCCh------HHHHHHhc---CCCEEE
Q psy7063 58 SKLTLKNVLF-REDCNADEL-------IDVINA-N----RVYLPCIYAYNKIDQISI------EEVDRIAR---QPNSVV 115 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~-------~~~l~~-~----~~~kP~IlV~NKiDl~~~------e~l~~l~~---~~~~vp 115 (188)
..+.++|+++ ++|++..+. ...+.. . ....|+++|+||+|+... ++...+.. ...+++
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~ 156 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFL 156 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEE
T ss_pred HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEE
Confidence 4477899997 889874321 111211 1 146899999999998532 22333322 235899
Q ss_pred EeccccccHHHHHHHHHHhc
Q psy7063 116 VSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 116 ISA~~~~gld~L~~~I~~~L 135 (188)
+||++|.|+++|.+.|.+.+
T Consensus 157 ~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 157 TSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EBTTTTBSHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHH
Confidence 99999999999999888754
No 49
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.26 E-value=3e-06 Score=62.94 Aligned_cols=76 Identities=17% Similarity=0.099 Sum_probs=51.7
Q ss_pred cceeeEEE-EecCCchH----HH---HHHHh--cCCCCcEEEEEecCCCCCh-----HHHHHHh-c--CCCEEEEecccc
Q psy7063 60 LTLKNVLF-REDCNADE----LI---DVINA--NRVYLPCIYAYNKIDQISI-----EEVDRIA-R--QPNSVVVSCNMK 121 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~---~~l~~--~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~--~~~~vpISA~~~ 121 (188)
+.++|+++ +.|++..+ .. ..+.. ....+|+++|+||+|+.+. ++...+. . ...++++||++|
T Consensus 72 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (167)
T 1c1y_A 72 MKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSK 151 (167)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCC
Confidence 45688887 78887432 11 12211 1246899999999998642 2233332 2 235899999999
Q ss_pred ccHHHHHHHHHHhc
Q psy7063 122 LNLDYLLDIIWLYL 135 (188)
Q Consensus 122 ~gld~L~~~I~~~L 135 (188)
.|+++|.+.|.+.+
T Consensus 152 ~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 152 INVNEIFYDLVRQI 165 (167)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 50
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.26 E-value=2.7e-06 Score=66.36 Aligned_cols=78 Identities=13% Similarity=0.005 Sum_probs=52.5
Q ss_pred cccceeeEEE-EecCCchHH--------HHHHHhcCCCCcEEEEEecCCCCChHH-----------------HHHHh---
Q psy7063 58 SKLTLKNVLF-REDCNADEL--------IDVINANRVYLPCIYAYNKIDQISIEE-----------------VDRIA--- 108 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~--------~~~l~~~~~~kP~IlV~NKiDl~~~e~-----------------l~~l~--- 108 (188)
..+.++|+++ ++|++..+- ...+.......|+++|+||+|+.+... ...+.
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (201)
T 2gco_A 92 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI 171 (201)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHT
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhC
Confidence 3478899998 788874321 122222223689999999999875321 11111
Q ss_pred cCCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 109 RQPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 109 ~~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
....++++||++|.|+++|.+.|.+.+
T Consensus 172 ~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 172 SAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 122478999999999999999988754
No 51
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.25 E-value=2.2e-06 Score=65.77 Aligned_cols=78 Identities=13% Similarity=-0.041 Sum_probs=52.8
Q ss_pred ccceeeEEE-EecCCch----HHHHH---HHhc--CCCCcEEEEEecCCCCCh---HHHHHHhc---C----CCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNAD----ELIDV---INAN--RVYLPCIYAYNKIDQISI---EEVDRIAR---Q----PNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d----d~~~~---l~~~--~~~kP~IlV~NKiDl~~~---e~l~~l~~---~----~~~vpISA 118 (188)
.+.+||+++ ++|++.. ..... +... ....|+++|+||+|+... +++..... . ..++++||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 357899997 8888643 22222 2111 246899999999999742 33322211 1 14789999
Q ss_pred cccccHHHHHHHHHHhcc
Q psy7063 119 NMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L~ 136 (188)
++|.|+++|.+.|.+.+.
T Consensus 160 ~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp TTTBTHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 999999999999998763
No 52
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.25 E-value=1.5e-06 Score=66.92 Aligned_cols=78 Identities=10% Similarity=0.032 Sum_probs=51.8
Q ss_pred ccceeeEEE-EecCCchH----HHHHHHh-----cCCCCcEEEEEecCCCCCh---HHHHHHhc-------CCCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNADE----LIDVINA-----NRVYLPCIYAYNKIDQISI---EEVDRIAR-------QPNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~~l~~-----~~~~kP~IlV~NKiDl~~~---e~l~~l~~-------~~~~vpISA 118 (188)
.+.+||+++ ++|++..+ ....+.. ....+|+++|+||+|+.+. +++..... ...++++||
T Consensus 80 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (181)
T 1fzq_A 80 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA 159 (181)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred HhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccC
Confidence 357899997 88987432 2122211 1146899999999999743 23322111 113788999
Q ss_pred cccccHHHHHHHHHHhcc
Q psy7063 119 NMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L~ 136 (188)
++|.|++++.+.|.+.+.
T Consensus 160 ~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 160 LTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp TTCTTHHHHHHHHHHTC-
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988763
No 53
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.24 E-value=3.2e-06 Score=65.16 Aligned_cols=78 Identities=13% Similarity=0.002 Sum_probs=52.8
Q ss_pred cccceeeEEE-EecCCchHH-------HHHHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNADEL-------IDVINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~-------~~~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~ 121 (188)
..+.+||+++ ++|++..+. ...+.. .....|+++|+||+|+... ++...+. . ...++++||++|
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKEN 170 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCC
Confidence 3477899997 889874321 122222 2246899999999998532 2222222 1 235899999999
Q ss_pred ccHHHHHHHHHHhc
Q psy7063 122 LNLDYLLDIIWLYL 135 (188)
Q Consensus 122 ~gld~L~~~I~~~L 135 (188)
.|+++|.+.|.+.+
T Consensus 171 ~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 171 ISVRQAFERLVDAI 184 (191)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999888765
No 54
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.24 E-value=4e-06 Score=63.46 Aligned_cols=76 Identities=7% Similarity=-0.029 Sum_probs=50.7
Q ss_pred cceeeEEE-EecCCchH----HHH---HHHhc----CCCCcEEEEEecCCCC-------ChHHHHHHh-c--CCCEEEEe
Q psy7063 60 LTLKNVLF-REDCNADE----LID---VINAN----RVYLPCIYAYNKIDQI-------SIEEVDRIA-R--QPNSVVVS 117 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~---~l~~~----~~~kP~IlV~NKiDl~-------~~e~l~~l~-~--~~~~vpIS 117 (188)
+.+||+++ ++|++..+ +.. .+... ....|+++|+||+|+. ..++...+. . ...++++|
T Consensus 70 ~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 149 (178)
T 2iwr_A 70 SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETX 149 (178)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEB
T ss_pred HHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEe
Confidence 46789997 88987432 111 12211 1368999999999983 223333332 1 23478999
Q ss_pred ccccccHHHHHHHHHHhc
Q psy7063 118 CNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 118 A~~~~gld~L~~~I~~~L 135 (188)
|++|.|+++|.+.|.+.+
T Consensus 150 a~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 150 ATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHH
Confidence 999999999998887754
No 55
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.23 E-value=1.4e-06 Score=67.76 Aligned_cols=77 Identities=17% Similarity=-0.028 Sum_probs=51.6
Q ss_pred ccceeeEEE-EecCCchH----HHHHHHh-c----CCCCcEEEEEecCCCCCh---HHHHHHh--cC-----CCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNADE----LIDVINA-N----RVYLPCIYAYNKIDQISI---EEVDRIA--RQ-----PNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~~l~~-~----~~~kP~IlV~NKiDl~~~---e~l~~l~--~~-----~~~vpISA 118 (188)
.+.+||+++ ++|++..+ ....+.. . ....|+++|+||+|+.+. +++.... .. ..++++||
T Consensus 93 ~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA 172 (192)
T 2b6h_A 93 YFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCA 172 (192)
T ss_dssp HHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcC
Confidence 357899997 88987432 2122211 1 136899999999999753 2332211 10 13789999
Q ss_pred cccccHHHHHHHHHHhc
Q psy7063 119 NMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L 135 (188)
++|.|+++|.+.|.+.+
T Consensus 173 ~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 173 TQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp TTTBTHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHH
Confidence 99999999999998765
No 56
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.23 E-value=4.7e-06 Score=62.51 Aligned_cols=78 Identities=17% Similarity=0.030 Sum_probs=51.0
Q ss_pred ccceeeEEE-EecCCchH----HH---HHHHhc--CCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LI---DVINAN--RVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMK 121 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~---~~l~~~--~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~ 121 (188)
-+..+|+++ +.|++..+ .. ..+... ...+|+++|+||+|+.+. ++...+. . ...++++||++|
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g 153 (175)
T 2nzj_A 74 CLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQ 153 (175)
T ss_dssp TTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTT
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCC
Confidence 367788887 78887432 11 122221 136899999999999743 2222222 1 125899999999
Q ss_pred ccHHHHHHHHHHhcc
Q psy7063 122 LNLDYLLDIIWLYLS 136 (188)
Q Consensus 122 ~gld~L~~~I~~~L~ 136 (188)
.|+++|.+.|.+.+.
T Consensus 154 ~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 154 HNVAELFEGVVRQLR 168 (175)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987653
No 57
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.22 E-value=2.6e-06 Score=67.31 Aligned_cols=77 Identities=14% Similarity=-0.000 Sum_probs=50.5
Q ss_pred ccceeeEEE-EecCCchHHH--------HHHHhcCCCCcEEEEEecCCCCChH-----------------HHHHHh---c
Q psy7063 59 KLTLKNVLF-REDCNADELI--------DVINANRVYLPCIYAYNKIDQISIE-----------------EVDRIA---R 109 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~--------~~l~~~~~~kP~IlV~NKiDl~~~e-----------------~l~~l~---~ 109 (188)
.+.+||+++ ++|++..+-. ..+......+|+++|+||+|+.... +...+. .
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 181 (214)
T 2j1l_A 102 FYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVG 181 (214)
T ss_dssp ---CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcC
Confidence 467899997 8898743211 1122222468999999999987432 112221 2
Q ss_pred CCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 110 QPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 110 ~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
...++++||++|.|+++|.+.|.+.+
T Consensus 182 ~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 182 AVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp CSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 22589999999999999999988764
No 58
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.22 E-value=1.5e-06 Score=65.91 Aligned_cols=78 Identities=12% Similarity=-0.009 Sum_probs=53.0
Q ss_pred ccceeeEEE-EecCCchH-H-------HHHHHhcCCCCcEEEEEecCCCCChH-----------------HHHHHh---c
Q psy7063 59 KLTLKNVLF-REDCNADE-L-------IDVINANRVYLPCIYAYNKIDQISIE-----------------EVDRIA---R 109 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd-~-------~~~l~~~~~~kP~IlV~NKiDl~~~e-----------------~l~~l~---~ 109 (188)
.+.+||+++ ++|++..+ + ...+......+|+++|+||+|+.+.. +...+. .
T Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152 (186)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC
Confidence 478899997 88987432 1 11222222378999999999986431 111121 1
Q ss_pred CCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 110 QPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 110 ~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
...++++||++|.|+++|.+.|.+.+.
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 153 AVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 225899999999999999999988763
No 59
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.22 E-value=3.4e-06 Score=66.53 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=53.8
Q ss_pred cccceeeEEE-EecCCchHH-------HHHHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh--cCCCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNADEL-------IDVINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA--RQPNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~-------~~~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~--~~~~~vpISA~~~ 121 (188)
..+.+||+++ ++|++..+- ...+.. .....|+++|+||+|+.+. ++...+. ....++++||++|
T Consensus 94 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g 173 (201)
T 2ew1_A 94 SYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKES 173 (201)
T ss_dssp GGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 4578899997 889874331 112221 2246899999999998632 2222232 1235899999999
Q ss_pred ccHHHHHHHHHHhcc
Q psy7063 122 LNLDYLLDIIWLYLS 136 (188)
Q Consensus 122 ~gld~L~~~I~~~L~ 136 (188)
.|+++|.+.|.+.+.
T Consensus 174 ~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 174 DNVEKLFLDLACRLI 188 (201)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998887653
No 60
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.22 E-value=3.7e-06 Score=64.62 Aligned_cols=77 Identities=16% Similarity=0.042 Sum_probs=52.5
Q ss_pred ccceeeEEE-EecCCchH----HH---HHHHhc-CCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LI---DVINAN-RVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~---~~l~~~-~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~ 122 (188)
.+.+||+++ ++|++..+ +. ..+... ...+|+++|+||+|+.+. ++...+. . ...++++||++|.
T Consensus 91 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 170 (189)
T 2gf9_A 91 YYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENI 170 (189)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 467899997 88987432 11 222221 246899999999998642 2233332 1 1258999999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|+++|.+.|.+.+
T Consensus 171 gi~~l~~~l~~~i 183 (189)
T 2gf9_A 171 NVKQVFERLVDVI 183 (189)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999988765
No 61
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.22 E-value=3e-06 Score=66.30 Aligned_cols=76 Identities=14% Similarity=0.040 Sum_probs=52.4
Q ss_pred cceeeEEE-EecCCchHH-------HHHHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh---cCCCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADEL-------IDVINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA---RQPNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~-------~~~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~---~~~~~vpISA~~~~ 122 (188)
+.+||+++ ++|++..+- ...+.. .....|+++|+||+|+... +++..+. ....++++||++|.
T Consensus 99 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 178 (201)
T 2hup_A 99 YRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS 178 (201)
T ss_dssp HTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 57899997 889875321 112221 1246899999999998642 2333332 22257999999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|+++|.+.|.+.+
T Consensus 179 gi~~l~~~l~~~i 191 (201)
T 2hup_A 179 NVEEAFLRVATEL 191 (201)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999988765
No 62
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.22 E-value=4.1e-06 Score=63.67 Aligned_cols=79 Identities=11% Similarity=0.020 Sum_probs=48.3
Q ss_pred cccceeeEEE-EecCCchHH----HH---HHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNADEL----ID---VINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~----~~---~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~ 121 (188)
..+.+||+++ ++|++..+- .. .+.. .....|+++|+||+|+.+. ++...+. . ...++++||++|
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (183)
T 2fu5_C 76 AYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKAN 155 (183)
T ss_dssp TTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 3467899997 889875321 11 1211 1236899999999998642 2333332 1 125899999999
Q ss_pred ccHHHHHHHHHHhcc
Q psy7063 122 LNLDYLLDIIWLYLS 136 (188)
Q Consensus 122 ~gld~L~~~I~~~L~ 136 (188)
.|+++|.+.|.+.+.
T Consensus 156 ~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 156 INVENAFFTLARDIK 170 (183)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998887653
No 63
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.21 E-value=2e-06 Score=76.80 Aligned_cols=80 Identities=13% Similarity=-0.065 Sum_probs=54.6
Q ss_pred hcccceeeEEE-EecCCchH----HHHHHHh-----cCCCCcEEEEEecCCCCCh---HHHHHHhc--C-----CCEEEE
Q psy7063 57 PSKLTLKNVLF-REDCNADE----LIDVINA-----NRVYLPCIYAYNKIDQISI---EEVDRIAR--Q-----PNSVVV 116 (188)
Q Consensus 57 ~~~i~~ADvvl-~~D~s~dd----~~~~l~~-----~~~~kP~IlV~NKiDl~~~---e~l~~l~~--~-----~~~vpI 116 (188)
...+.+||++| ++|++..+ ....+.. ....+|+|+|+||+|+... +++..... . ..++++
T Consensus 384 ~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 463 (497)
T ss_dssp GGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEEC
T ss_pred HHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEE
Confidence 34578899998 89987432 1112111 1136899999999999643 33322211 1 137899
Q ss_pred eccccccHHHHHHHHHHhcc
Q psy7063 117 SCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 117 SA~~~~gld~L~~~I~~~L~ 136 (188)
||++|.|+++|.+.|.+.+.
T Consensus 464 SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 464 CATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp BTTTTBTHHHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 64
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.21 E-value=1.9e-06 Score=66.19 Aligned_cols=78 Identities=14% Similarity=-0.061 Sum_probs=52.4
Q ss_pred ccceeeEEE-EecCCch----HHHHHHHh---c--CCCCcEEEEEecCCCCCh---HHHHHHh--c-C----CCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNAD----ELIDVINA---N--RVYLPCIYAYNKIDQISI---EEVDRIA--R-Q----PNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d----d~~~~l~~---~--~~~kP~IlV~NKiDl~~~---e~l~~l~--~-~----~~~vpISA 118 (188)
.+.+||+++ ++|++.. +....+.. . ...+|+++|+||+|+.+. +++.... . . ..++++||
T Consensus 86 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 165 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSS 165 (189)
T ss_dssp SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccC
Confidence 467899997 8888632 22222211 1 136899999999999754 3332211 1 1 13789999
Q ss_pred cccccHHHHHHHHHHhcc
Q psy7063 119 NMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L~ 136 (188)
++|.|+++|.+.|.+.+.
T Consensus 166 ~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 166 KTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHH
Confidence 999999999999988764
No 65
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.21 E-value=4.6e-06 Score=63.35 Aligned_cols=78 Identities=13% Similarity=0.079 Sum_probs=52.7
Q ss_pred cceeeEEE-EecCCchH----HHH---HHHh--cCCCCcEEEEEecCCCCCh----HHHHHHh-c-CCCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LID---VINA--NRVYLPCIYAYNKIDQISI----EEVDRIA-R-QPNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~---~l~~--~~~~kP~IlV~NKiDl~~~----e~l~~l~-~-~~~~vpISA~~~~g 123 (188)
+..+|+++ ++|++..+ +.. .+.. .....|+++|+||+|+.+. +....+. . ...++++||++|.|
T Consensus 73 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 152 (189)
T 4dsu_A 73 MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQG 152 (189)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 46688887 78887432 111 1211 1246899999999998642 2233332 1 23589999999999
Q ss_pred HHHHHHHHHHhccc
Q psy7063 124 LDYLLDIIWLYLSL 137 (188)
Q Consensus 124 ld~L~~~I~~~L~~ 137 (188)
+++|.+.|.+.+..
T Consensus 153 i~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 153 VDDAFYTLVREIRK 166 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 66
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.21 E-value=8.5e-06 Score=62.50 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=50.6
Q ss_pred ceeeEEE-EecCCc----hH--HHHHHHhcCCCCcEEEEEecCCCCChHHH----HHH----hc--CCCEEEEecccccc
Q psy7063 61 TLKNVLF-REDCNA----DE--LIDVINANRVYLPCIYAYNKIDQISIEEV----DRI----AR--QPNSVVVSCNMKLN 123 (188)
Q Consensus 61 ~~ADvvl-~~D~s~----dd--~~~~l~~~~~~kP~IlV~NKiDl~~~e~l----~~l----~~--~~~~vpISA~~~~g 123 (188)
..+|+++ ++|++. .+ +...+. ....|+++|+||+|+.+..++ +.+ .. ...++++||++|.|
T Consensus 104 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 181 (195)
T 1svi_A 104 EELKAVVQIVDLRHAPSNDDVQMYEFLK--YYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKG 181 (195)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHH--HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTT
T ss_pred hcCCEEEEEEECCCCCCHHHHHHHHHHH--HcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCC
Confidence 3458887 788763 12 122232 246899999999999865332 222 11 23589999999999
Q ss_pred HHHHHHHHHHhcc
Q psy7063 124 LDYLLDIIWLYLS 136 (188)
Q Consensus 124 ld~L~~~I~~~L~ 136 (188)
+++|.+.|.+.+.
T Consensus 182 v~~l~~~l~~~l~ 194 (195)
T 1svi_A 182 KDEAWGAIKKMIN 194 (195)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 67
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.21 E-value=1.3e-06 Score=66.08 Aligned_cols=78 Identities=12% Similarity=0.076 Sum_probs=52.8
Q ss_pred cccceeeEEE-EecCCchHH--------HHHHHhcCCCCcEEEEEecCCCCChHH---------------HHHHh---cC
Q psy7063 58 SKLTLKNVLF-REDCNADEL--------IDVINANRVYLPCIYAYNKIDQISIEE---------------VDRIA---RQ 110 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~--------~~~l~~~~~~kP~IlV~NKiDl~~~e~---------------l~~l~---~~ 110 (188)
..+.++|+++ ++|++..+- ...+.......|+++|+||+|+.+... ...+. ..
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 154 (182)
T 3bwd_D 75 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA 154 (182)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC
Confidence 3467899997 889874321 112222223689999999999864321 12222 22
Q ss_pred CCEEEEeccccccHHHHHHHHHHhc
Q psy7063 111 PNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 111 ~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
..++++||++|.|+++|.+.|.+.+
T Consensus 155 ~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 155 PAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999988764
No 68
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.21 E-value=5.7e-06 Score=64.14 Aligned_cols=78 Identities=13% Similarity=0.007 Sum_probs=52.8
Q ss_pred cccceeeEEE-EecCCchHH----H---HHHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNADEL----I---DVINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~----~---~~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~ 121 (188)
..+.+||+++ ++|++..+- . ..+.. .....|+++|+||+|+... +....+. . ...++++||++|
T Consensus 76 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (203)
T 1zbd_A 76 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDN 155 (203)
T ss_dssp TTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred HhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCC
Confidence 4478899997 889874321 1 12221 1246899999999998642 2222232 1 125899999999
Q ss_pred ccHHHHHHHHHHhc
Q psy7063 122 LNLDYLLDIIWLYL 135 (188)
Q Consensus 122 ~gld~L~~~I~~~L 135 (188)
.|+++|.+.|.+.+
T Consensus 156 ~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 156 INVKQTFERLVDVI 169 (203)
T ss_dssp BSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999988887765
No 69
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.21 E-value=6.3e-06 Score=61.36 Aligned_cols=77 Identities=10% Similarity=0.014 Sum_probs=52.3
Q ss_pred cceeeEEE-EecCCchHH-------HHHHHh-cCCCCcEEEEEecCCCCCh----HHHHHHh-c-CCCEEEEeccccccH
Q psy7063 60 LTLKNVLF-REDCNADEL-------IDVINA-NRVYLPCIYAYNKIDQISI----EEVDRIA-R-QPNSVVVSCNMKLNL 124 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~-------~~~l~~-~~~~kP~IlV~NKiDl~~~----e~l~~l~-~-~~~~vpISA~~~~gl 124 (188)
+.+||+++ ++|++..+- ...+.. ....+|+++|+||+|+... +....+. . ...++++||++|.|+
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 152 (170)
T 1g16_A 73 YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNV 152 (170)
T ss_dssp HTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSH
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 57899997 889874321 112221 2246899999999998532 2233332 1 135899999999999
Q ss_pred HHHHHHHHHhcc
Q psy7063 125 DYLLDIIWLYLS 136 (188)
Q Consensus 125 d~L~~~I~~~L~ 136 (188)
++|.+.|.+.+.
T Consensus 153 ~~l~~~l~~~~~ 164 (170)
T 1g16_A 153 NEIFFTLAKLIQ 164 (170)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 70
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.20 E-value=2.9e-06 Score=63.37 Aligned_cols=78 Identities=13% Similarity=-0.011 Sum_probs=53.0
Q ss_pred cccceeeEEE-EecCCchHH----HHH---HHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNADEL----IDV---INA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~----~~~---l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~ 121 (188)
..+.++|+++ ++|++..+. ... +.. .....|+++|+||+|+.+. ++...+. . ....+++||++|
T Consensus 74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (170)
T 1z08_A 74 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQN 153 (170)
T ss_dssp CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCC
Confidence 4478899997 889875331 111 111 1136899999999998642 2233332 2 235899999999
Q ss_pred ccHHHHHHHHHHhc
Q psy7063 122 LNLDYLLDIIWLYL 135 (188)
Q Consensus 122 ~gld~L~~~I~~~L 135 (188)
.|+++|.+.|.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 154 KGIEELFLDLCKRM 167 (170)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 71
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.20 E-value=2.4e-06 Score=63.55 Aligned_cols=77 Identities=14% Similarity=0.020 Sum_probs=52.0
Q ss_pred cceeeEEE-EecCCchHH----HH---HHHh-cCCCCcEEEEEecCCCCCh--------HHHHHHh-c-CCCEEEEeccc
Q psy7063 60 LTLKNVLF-REDCNADEL----ID---VINA-NRVYLPCIYAYNKIDQISI--------EEVDRIA-R-QPNSVVVSCNM 120 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~----~~---~l~~-~~~~kP~IlV~NKiDl~~~--------e~l~~l~-~-~~~~vpISA~~ 120 (188)
+.+||+++ ++|++..+. .. .+.. .....|+++|+||+|+.+. +....+. . ...++++||++
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 152 (170)
T 1ek0_A 73 YRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKT 152 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTT
T ss_pred hccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 57889997 889875421 11 1211 2246899999999998632 1122222 1 23589999999
Q ss_pred cccHHHHHHHHHHhcc
Q psy7063 121 KLNLDYLLDIIWLYLS 136 (188)
Q Consensus 121 ~~gld~L~~~I~~~L~ 136 (188)
|.|+++|.+.|.+.+.
T Consensus 153 ~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 153 GENVNDVFLGIGEKIP 168 (170)
T ss_dssp CTTHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987653
No 72
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.19 E-value=3.6e-06 Score=65.08 Aligned_cols=77 Identities=16% Similarity=0.067 Sum_probs=52.8
Q ss_pred cceeeEEE-EecCCchHH----H---HHHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADEL----I---DVINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~----~---~~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~~g 123 (188)
+.++|+++ ++|++..+. . ..+.. .....|+++|+||+|+.+. ++...+. .. ..++++||++|.|
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAIN 172 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBS
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC
Confidence 57789987 888874321 1 11221 1236899999999998632 2333332 22 3479999999999
Q ss_pred HHHHHHHHHHhcc
Q psy7063 124 LDYLLDIIWLYLS 136 (188)
Q Consensus 124 ld~L~~~I~~~L~ 136 (188)
+++|.+.|.+.+.
T Consensus 173 i~~l~~~l~~~i~ 185 (192)
T 2fg5_A 173 IEELFQGISRQIP 185 (192)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 73
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.19 E-value=6.4e-06 Score=64.09 Aligned_cols=79 Identities=13% Similarity=-0.019 Sum_probs=53.9
Q ss_pred cccceeeEEE-EecCCchHH----H---HHHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNADEL----I---DVINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~----~---~~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~ 121 (188)
..+.+||+++ ++|++..+- . ..+.. .....|+++|+||+|+.+. ++...+. . ...++++||++|
T Consensus 76 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 155 (206)
T 2bcg_Y 76 SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDS 155 (206)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTC
T ss_pred HhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 3467899997 889875321 1 12221 2246899999999998742 2223232 1 235899999999
Q ss_pred ccHHHHHHHHHHhcc
Q psy7063 122 LNLDYLLDIIWLYLS 136 (188)
Q Consensus 122 ~gld~L~~~I~~~L~ 136 (188)
.|+++|.+.|.+.+.
T Consensus 156 ~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 156 TNVEDAFLTMARQIK 170 (206)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999887764
No 74
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.19 E-value=1.5e-06 Score=75.64 Aligned_cols=92 Identities=15% Similarity=0.065 Sum_probs=59.4
Q ss_pred HHHhhhhhcccceeeEEE-EecCCchH--HHHHHHhcCCCCcEEEEEecCCCCChH----HHHHH-----hc--C--CCE
Q psy7063 50 AYEADTLPSKLTLKNVLF-REDCNADE--LIDVINANRVYLPCIYAYNKIDQISIE----EVDRI-----AR--Q--PNS 113 (188)
Q Consensus 50 a~~~~~~~~~i~~ADvvl-~~D~s~dd--~~~~l~~~~~~kP~IlV~NKiDl~~~e----~l~~l-----~~--~--~~~ 113 (188)
+|++.+.++ ...+++++ ++|++..+ ....+......+|+++|+||+|+.+.+ .+..+ .. + .++
T Consensus 60 ~f~~~L~~~-~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v 138 (369)
T 3ec1_A 60 DFLSMLHRI-GESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDV 138 (369)
T ss_dssp HHHHHHHHH-HHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEE
T ss_pred HHHHHHHHh-hccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccE
Confidence 455555552 36677887 89987432 111111112368999999999997542 22211 11 2 257
Q ss_pred EEEeccccccHHHHHHHHHHhcccceeee
Q psy7063 114 VVVSCNMKLNLDYLLDIIWLYLSLIRVYT 142 (188)
Q Consensus 114 vpISA~~~~gld~L~~~I~~~L~~irVY~ 142 (188)
+++||++|.|+++|.+.|.+.+.-.+|+-
T Consensus 139 ~~iSA~~g~gi~~L~~~I~~~~~~~~i~~ 167 (369)
T 3ec1_A 139 CLVSAAKGIGMAKVMEAINRYREGGDVYV 167 (369)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHTTSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHhhcccCcEEE
Confidence 89999999999999999988765544444
No 75
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.17 E-value=5.9e-06 Score=63.79 Aligned_cols=78 Identities=17% Similarity=0.001 Sum_probs=43.9
Q ss_pred cccceeeEEE-EecCCchH----HHH---HHHhcC----CCCcEEEEEecCCCCC-h-----HHHHHHh-cC-CCEEEEe
Q psy7063 58 SKLTLKNVLF-REDCNADE----LID---VINANR----VYLPCIYAYNKIDQIS-I-----EEVDRIA-RQ-PNSVVVS 117 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd----~~~---~l~~~~----~~kP~IlV~NKiDl~~-~-----e~l~~l~-~~-~~~vpIS 117 (188)
..+.+||+++ ++|++..+ +.. .+.... ..+|+++|+||+|+.+ . ++...+. .. ..++++|
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~S 171 (208)
T 2yc2_C 92 QYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVS 171 (208)
T ss_dssp TTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECC
T ss_pred HHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEec
Confidence 4578899997 88987532 111 122111 4689999999999875 2 2233332 22 3588999
Q ss_pred ccc-cccHHHHHHHHHHhc
Q psy7063 118 CNM-KLNLDYLLDIIWLYL 135 (188)
Q Consensus 118 A~~-~~gld~L~~~I~~~L 135 (188)
|++ |.|+++|.+.|.+.+
T Consensus 172 a~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 172 ANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp C-------CHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 999 999999998887754
No 76
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.17 E-value=4.2e-06 Score=62.88 Aligned_cols=76 Identities=13% Similarity=-0.080 Sum_probs=51.7
Q ss_pred cceeeEEE-EecCCchHH----H---HHHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADEL----I---DVINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~----~---~~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~~g 123 (188)
+.++|+++ ++|++..+. . ..+.. .....|+++|+||+|+.+. ++...+. .. ..++++||++|.|
T Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (179)
T 1z0f_A 85 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 164 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 56789887 889874321 1 11222 2246899999999998632 2233332 22 3589999999999
Q ss_pred HHHHHHHHHHhc
Q psy7063 124 LDYLLDIIWLYL 135 (188)
Q Consensus 124 ld~L~~~I~~~L 135 (188)
+++|.+.|.+.+
T Consensus 165 i~~l~~~l~~~i 176 (179)
T 1z0f_A 165 VEDAFLEAAKKI 176 (179)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 77
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.17 E-value=2.7e-06 Score=66.84 Aligned_cols=77 Identities=14% Similarity=0.036 Sum_probs=51.2
Q ss_pred cceeeEEE-EecCCchH----HH---HHHHh-cCCCCcEEEEEecCCCCChHH-----HHHHhc--CCCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LI---DVINA-NRVYLPCIYAYNKIDQISIEE-----VDRIAR--QPNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~---~~l~~-~~~~kP~IlV~NKiDl~~~e~-----l~~l~~--~~~~vpISA~~~~g 123 (188)
+.+||+++ ++|++... +. ..+.. ....+|+++|+||+|+.+... ...+.. ...++++||++|.|
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (218)
T 4djt_A 82 YIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161 (218)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBT
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 56789997 88987432 21 11211 223589999999999875421 222222 23589999999999
Q ss_pred HHHHHHHHHHhcc
Q psy7063 124 LDYLLDIIWLYLS 136 (188)
Q Consensus 124 ld~L~~~I~~~L~ 136 (188)
+++|.+.|.+.+.
T Consensus 162 v~~l~~~l~~~~~ 174 (218)
T 4djt_A 162 FGLPFLHLARIFT 174 (218)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 78
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.17 E-value=1e-06 Score=76.75 Aligned_cols=92 Identities=14% Similarity=-0.009 Sum_probs=59.2
Q ss_pred HHHhhhhhcccceeeEEE-EecCCchHH--HHHHHhcCCCCcEEEEEecCCCCChH----HHHHH-----h--cC--CCE
Q psy7063 50 AYEADTLPSKLTLKNVLF-REDCNADEL--IDVINANRVYLPCIYAYNKIDQISIE----EVDRI-----A--RQ--PNS 113 (188)
Q Consensus 50 a~~~~~~~~~i~~ADvvl-~~D~s~dd~--~~~l~~~~~~kP~IlV~NKiDl~~~e----~l~~l-----~--~~--~~~ 113 (188)
+|++.+.++ .+.+|+++ ++|++..+. ...+......+|+++|+||+|+.+.+ .+..+ . .+ .++
T Consensus 58 ~f~~~l~~i-~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v 136 (368)
T 3h2y_A 58 DFLRILNGI-GKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV 136 (368)
T ss_dssp HHHHHHHHH-HHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHHHH-hccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence 455555553 34666777 899885431 11122222479999999999997532 22211 1 12 157
Q ss_pred EEEeccccccHHHHHHHHHHhcccceeee
Q psy7063 114 VVVSCNMKLNLDYLLDIIWLYLSLIRVYT 142 (188)
Q Consensus 114 vpISA~~~~gld~L~~~I~~~L~~irVY~ 142 (188)
+++||++|.|+++|.+.|.+...-.+|+-
T Consensus 137 ~~iSA~~g~gi~~L~~~l~~~~~~~~i~~ 165 (368)
T 3h2y_A 137 FLISAAKGQGIAELADAIEYYRGGKDVYV 165 (368)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHTTSCEEE
T ss_pred EEEeCCCCcCHHHHHhhhhhhcccceEEE
Confidence 89999999999999999988765444443
No 79
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.16 E-value=4.8e-06 Score=63.66 Aligned_cols=77 Identities=13% Similarity=0.035 Sum_probs=52.2
Q ss_pred cceeeEEE-EecCCchH----HHH---HHHhc--CCCCcEEEEEecCCCCCh----HHHHHHh-cC-CCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LID---VINAN--RVYLPCIYAYNKIDQISI----EEVDRIA-RQ-PNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~---~l~~~--~~~kP~IlV~NKiDl~~~----e~l~~l~-~~-~~~vpISA~~~~g 123 (188)
+.+||+++ ++|++..+ +.. .+... ...+|+++|+||+|+... ++...+. .. ..++++||+++.|
T Consensus 85 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (195)
T 1x3s_A 85 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDG 164 (195)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 57899997 88987542 111 22111 136899999999998532 2222222 22 3478999999999
Q ss_pred HHHHHHHHHHhcc
Q psy7063 124 LDYLLDIIWLYLS 136 (188)
Q Consensus 124 ld~L~~~I~~~L~ 136 (188)
+++|.+.|.+.+.
T Consensus 165 i~~l~~~l~~~~~ 177 (195)
T 1x3s_A 165 VQCAFEELVEKII 177 (195)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 80
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.16 E-value=5.4e-06 Score=62.86 Aligned_cols=78 Identities=15% Similarity=-0.000 Sum_probs=51.4
Q ss_pred ccceeeEEE-EecCCchHHHH-------HHHh--cCCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecccc
Q psy7063 59 KLTLKNVLF-REDCNADELID-------VINA--NRVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMK 121 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~~-------~l~~--~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~ 121 (188)
.+.++|+++ ++|++..+-.+ .+.. ....+|+++|+||+|+... ++...+. .. ..++++||++|
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153 (181)
T ss_dssp GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSH
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCC
Confidence 357789997 78887532111 1111 1236899999999998532 2233332 22 24899999999
Q ss_pred ccHHHHHHHHHHhcc
Q psy7063 122 LNLDYLLDIIWLYLS 136 (188)
Q Consensus 122 ~gld~L~~~I~~~L~ 136 (188)
.|+++|.+.|.+.+.
T Consensus 154 ~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 154 QTAVDVFRRIILEAE 168 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988765
No 81
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.16 E-value=5.3e-06 Score=63.26 Aligned_cols=76 Identities=17% Similarity=0.079 Sum_probs=50.0
Q ss_pred cceeeEEE-EecCCchHH----HHHHHh--cCCCCcEEEEEecCCCCC----hHHHHHHh-c-CCCEEEEeccccccHHH
Q psy7063 60 LTLKNVLF-REDCNADEL----IDVINA--NRVYLPCIYAYNKIDQIS----IEEVDRIA-R-QPNSVVVSCNMKLNLDY 126 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~----~~~l~~--~~~~kP~IlV~NKiDl~~----~e~l~~l~-~-~~~~vpISA~~~~gld~ 126 (188)
+..||+++ ++|++..+. ...+.. .....|+++|+||+|... .+++..+. . ...++++||++|.|+++
T Consensus 114 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 193 (208)
T 3clv_A 114 YRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKN 193 (208)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Confidence 67899997 889875421 111111 112489999999999422 12333332 2 23589999999999999
Q ss_pred HHHHHHHhc
Q psy7063 127 LLDIIWLYL 135 (188)
Q Consensus 127 L~~~I~~~L 135 (188)
|.+.|.+.+
T Consensus 194 l~~~l~~~~ 202 (208)
T 3clv_A 194 IFYMLAEEI 202 (208)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887754
No 82
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.16 E-value=4.4e-06 Score=65.44 Aligned_cols=78 Identities=15% Similarity=0.087 Sum_probs=52.5
Q ss_pred cccceeeEEE-EecCCchHH--------HHHHHhcCCCCcEEEEEecCCCCChHHH-----------------HHHh---
Q psy7063 58 SKLTLKNVLF-REDCNADEL--------IDVINANRVYLPCIYAYNKIDQISIEEV-----------------DRIA--- 108 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~--------~~~l~~~~~~kP~IlV~NKiDl~~~e~l-----------------~~l~--- 108 (188)
..+.+||+++ ++|++..+- ...+......+|+++|+||+|+.+.... ..+.
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (207)
T 2fv8_A 92 LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRI 171 (207)
T ss_dssp GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhc
Confidence 3467899997 788875321 1122222237899999999998643211 1111
Q ss_pred cCCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 109 RQPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 109 ~~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
....++++||++|.|+++|.+.|.+.+
T Consensus 172 ~~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 172 QAYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 112578999999999999999998765
No 83
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.15 E-value=3.1e-06 Score=65.58 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=51.9
Q ss_pred cceeeEEE-EecCCchHHH-------HHHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c--CCCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADELI-------DVINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R--QPNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~-------~~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~--~~~~vpISA~~~~ 122 (188)
+.++|+++ ++|++..+-. ..+.. ....+|+++|+||+|+.+. ++...+. . ...++++||++|.
T Consensus 96 ~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 175 (192)
T 2il1_A 96 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNF 175 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTB
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 56789997 8898743211 22222 2236899999999998642 2233332 2 2357899999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|+++|.+.|.+.+
T Consensus 176 gi~~l~~~l~~~i 188 (192)
T 2il1_A 176 NVDEIFLKLVDDI 188 (192)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999988764
No 84
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.15 E-value=3.1e-06 Score=69.37 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=50.6
Q ss_pred eeeEEE-EecCCch---HH---HH---HHHh--cCCCCcEEEEEecCCCCChHHH---HHHh-c--CCCEEEEecccccc
Q psy7063 62 LKNVLF-REDCNAD---EL---ID---VINA--NRVYLPCIYAYNKIDQISIEEV---DRIA-R--QPNSVVVSCNMKLN 123 (188)
Q Consensus 62 ~ADvvl-~~D~s~d---d~---~~---~l~~--~~~~kP~IlV~NKiDl~~~e~l---~~l~-~--~~~~vpISA~~~~g 123 (188)
+||+++ ++|++.. .+ .. .+.. .....|+++|+||+|+.+...+ ..+. . ...++++||++|.|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 799997 7887652 11 11 1111 1246899999999999754332 2222 2 23589999999999
Q ss_pred HHHHHHHHHHhc
Q psy7063 124 LDYLLDIIWLYL 135 (188)
Q Consensus 124 ld~L~~~I~~~L 135 (188)
+++|.+.|.+.+
T Consensus 242 v~elf~~l~~~l 253 (255)
T 3c5h_A 242 VDLAFSTLVQLI 253 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 85
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.15 E-value=1.3e-05 Score=59.04 Aligned_cols=76 Identities=11% Similarity=0.067 Sum_probs=51.1
Q ss_pred cceeeEEE-EecCCchHH----H---HHHHh--cCCCCcEEEEEecCCCCCh----HHHHHHh-c-CCCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADEL----I---DVINA--NRVYLPCIYAYNKIDQISI----EEVDRIA-R-QPNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~----~---~~l~~--~~~~kP~IlV~NKiDl~~~----e~l~~l~-~-~~~~vpISA~~~~g 123 (188)
+..+|.++ ++|++..+. . ..+.. ....+|+++|+||+|+.+. ++...+. . ...++++||++|.|
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 151 (166)
T 2ce2_X 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQG 151 (166)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 45688887 788874321 1 11211 1236899999999998642 2233332 1 23589999999999
Q ss_pred HHHHHHHHHHhc
Q psy7063 124 LDYLLDIIWLYL 135 (188)
Q Consensus 124 ld~L~~~I~~~L 135 (188)
+++|.+.|.+.+
T Consensus 152 i~~l~~~l~~~~ 163 (166)
T 2ce2_X 152 VEDAFYTLVREI 163 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 86
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.14 E-value=1.2e-05 Score=60.38 Aligned_cols=78 Identities=12% Similarity=-0.029 Sum_probs=52.7
Q ss_pred cccceeeEEE-EecCCchHH-------HHHHHh-c----CCCCcEEEEEecCCCCCh----HHHHHHh---cCCCEEEEe
Q psy7063 58 SKLTLKNVLF-REDCNADEL-------IDVINA-N----RVYLPCIYAYNKIDQISI----EEVDRIA---RQPNSVVVS 117 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~-------~~~l~~-~----~~~kP~IlV~NKiDl~~~----e~l~~l~---~~~~~vpIS 117 (188)
..+..+|+++ ++|++..+. ...+.. . ....|+++|+||+|+... ++...+. ....++++|
T Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 154 (177)
T 1wms_A 75 PFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETS 154 (177)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECC
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEe
Confidence 3467889987 788874321 112211 1 146899999999998632 2333332 224689999
Q ss_pred ccccccHHHHHHHHHHhc
Q psy7063 118 CNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 118 A~~~~gld~L~~~I~~~L 135 (188)
|++|.|++++.+.|.+.+
T Consensus 155 a~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 155 AKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999988765
No 87
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.14 E-value=4.8e-06 Score=62.52 Aligned_cols=77 Identities=17% Similarity=0.065 Sum_probs=52.0
Q ss_pred cceeeEEE-EecCCchHH----HH---HHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADEL----ID---VINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~----~~---~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~g 123 (188)
+.++|+++ ++|++..+. .. .+.. .....|+++|+||+|+.+. ++...+. . ...++++||++|.|
T Consensus 84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (179)
T 2y8e_A 84 IRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 163 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBS
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 56789987 889874321 11 1111 2246899999999998642 2222221 1 23589999999999
Q ss_pred HHHHHHHHHHhcc
Q psy7063 124 LDYLLDIIWLYLS 136 (188)
Q Consensus 124 ld~L~~~I~~~L~ 136 (188)
+++|.+.|.+.+.
T Consensus 164 i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 164 VKQLFRRVAAALP 176 (179)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 88
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.14 E-value=2.4e-06 Score=73.78 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=55.4
Q ss_pred cceeeEEE-EecCCc---h----HHH---HHHHhc---CCCCcEEEEEecCCCCChH-HHHHHh-cC---CCEEEEeccc
Q psy7063 60 LTLKNVLF-REDCNA---D----ELI---DVINAN---RVYLPCIYAYNKIDQISIE-EVDRIA-RQ---PNSVVVSCNM 120 (188)
Q Consensus 60 i~~ADvvl-~~D~s~---d----d~~---~~l~~~---~~~kP~IlV~NKiDl~~~e-~l~~l~-~~---~~~vpISA~~ 120 (188)
+..+|+++ ++|++. . ++. ..+... ...+|+++|+||+|+.... .++.+. .+ ..++++||++
T Consensus 234 i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 234 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred HHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCC
Confidence 56699998 889864 2 111 222221 2469999999999998653 344443 22 3589999999
Q ss_pred cccHHHHHHHHHHhccc
Q psy7063 121 KLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 121 ~~gld~L~~~I~~~L~~ 137 (188)
+.|+++|.+.|.+.+..
T Consensus 314 g~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 314 REGLRELLFEVANQLEN 330 (342)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999998864
No 89
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.14 E-value=4.7e-06 Score=62.70 Aligned_cols=77 Identities=17% Similarity=0.165 Sum_probs=51.8
Q ss_pred cceeeEEE-EecCCchH----HHH---HH-Hh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LID---VI-NA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~---~l-~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~ 122 (188)
+.++|+++ ++|++..+ +.. .+ .. ....+|+++|+||+|+.+. ++...+. . ...++++||++|.
T Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 157 (181)
T 2fn4_A 78 MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRL 157 (181)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred HhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCC
Confidence 46688887 78887532 111 11 11 2346899999999998642 2222232 1 2358999999999
Q ss_pred cHHHHHHHHHHhcc
Q psy7063 123 NLDYLLDIIWLYLS 136 (188)
Q Consensus 123 gld~L~~~I~~~L~ 136 (188)
|+++|.+.|.+.+.
T Consensus 158 gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 158 NVDEAFEQLVRAVR 171 (181)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987764
No 90
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.14 E-value=7.4e-06 Score=63.28 Aligned_cols=76 Identities=5% Similarity=0.008 Sum_probs=50.5
Q ss_pred cceeeEEE-EecCCchH----HHH---HHHhcC--CCCcEEEEEecCCCC-------ChHHHHHHh-cC--CCEEEEecc
Q psy7063 60 LTLKNVLF-REDCNADE----LID---VINANR--VYLPCIYAYNKIDQI-------SIEEVDRIA-RQ--PNSVVVSCN 119 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~---~l~~~~--~~kP~IlV~NKiDl~-------~~e~l~~l~-~~--~~~vpISA~ 119 (188)
+.+||+++ ++|++..+ +.. .+.... ...|+++|+||+|+. ..++...+. .+ ..++.+||+
T Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 162 (184)
T 3ihw_A 83 AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCAT 162 (184)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTT
T ss_pred ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCC
Confidence 45688887 88987533 111 121111 358999999999983 122333332 22 357899999
Q ss_pred ccccHHHHHHHHHHhc
Q psy7063 120 MKLNLDYLLDIIWLYL 135 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L 135 (188)
+|.|+++|.+.|.+.+
T Consensus 163 ~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 163 YGLNVERVFQDVAQKV 178 (184)
T ss_dssp TTBTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999888764
No 91
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.13 E-value=2.2e-06 Score=76.10 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=55.4
Q ss_pred HHHhhhhhcccceeeEEE-EecCCc----h--HHHHHHHhcCCCCcEEEEEecCCCCChH-HHHHHh--cCCCEEEEecc
Q psy7063 50 AYEADTLPSKLTLKNVLF-REDCNA----D--ELIDVINANRVYLPCIYAYNKIDQISIE-EVDRIA--RQPNSVVVSCN 119 (188)
Q Consensus 50 a~~~~~~~~~i~~ADvvl-~~D~s~----d--d~~~~l~~~~~~kP~IlV~NKiDl~~~e-~l~~l~--~~~~~vpISA~ 119 (188)
+.+...+...+.+||++| ++|.+. . .+.+.+ ....+|+++|+||+|+.... ....+. .+.+.+++||+
T Consensus 90 ~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l--~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~ 167 (456)
T 4dcu_A 90 AQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKIL--YRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGT 167 (456)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHH--TTCCSCEEEEEECC---------CCSGGGSSSSEEECCTT
T ss_pred HHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHH--HHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecc
Confidence 344444555688999998 788652 1 222333 23579999999999987432 121122 34568999999
Q ss_pred ccccHHHHHHHHHHhccc
Q psy7063 120 MKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~~ 137 (188)
+|.|+++|.+.+.+.+..
T Consensus 168 ~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 168 HGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TCTTHHHHHHHHHTTGGG
T ss_pred cccchHHHHHHHHhhccc
Confidence 999999999999988754
No 92
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.13 E-value=6.7e-06 Score=63.36 Aligned_cols=76 Identities=16% Similarity=-0.036 Sum_probs=51.2
Q ss_pred cceeeEEE-EecCCchH----HHH---HHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LID---VINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~---~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~g 123 (188)
+.+||+++ ++|++..+ +.. .+.. .....|+++|+||+|+.+. ++...+. . ...++++||++|.|
T Consensus 91 ~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 170 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN 170 (191)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 56789987 88987432 111 2221 1246899999999998632 2233232 1 23588999999999
Q ss_pred HHHHHHHHHHhc
Q psy7063 124 LDYLLDIIWLYL 135 (188)
Q Consensus 124 ld~L~~~I~~~L 135 (188)
+++|.+.|.+.+
T Consensus 171 i~~l~~~l~~~i 182 (191)
T 2a5j_A 171 VEEAFINTAKEI 182 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 93
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.12 E-value=5.9e-06 Score=62.81 Aligned_cols=78 Identities=15% Similarity=-0.054 Sum_probs=52.6
Q ss_pred cccceeeEEE-EecCCchHH-------HHHHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNADEL-------IDVINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~-------~~~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~ 121 (188)
..+.+||+++ ++|++..+. ...+.. .....|+++|+||+|+... ++...+. . ...++++||++|
T Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (186)
T 2bme_A 78 SYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTG 157 (186)
T ss_dssp TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCC
Confidence 4578899997 889875321 111221 2346899999999998532 2222222 1 234789999999
Q ss_pred ccHHHHHHHHHHhc
Q psy7063 122 LNLDYLLDIIWLYL 135 (188)
Q Consensus 122 ~gld~L~~~I~~~L 135 (188)
.|++++.+.|.+.+
T Consensus 158 ~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 158 ENVEEAFVQCARKI 171 (186)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999998887765
No 94
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.12 E-value=2.6e-06 Score=75.72 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=52.8
Q ss_pred cccceeeEEE-EecCCc---hH---HHHHHHhcCCCCcEEEEEecCCCCCh-----HHH-HHHh------cCCCEEEEec
Q psy7063 58 SKLTLKNVLF-REDCNA---DE---LIDVINANRVYLPCIYAYNKIDQISI-----EEV-DRIA------RQPNSVVVSC 118 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~---dd---~~~~l~~~~~~kP~IlV~NKiDl~~~-----e~l-~~l~------~~~~~vpISA 118 (188)
+.+..||+++ ++|++. +. +...+.. ..+|+++|+||+|+.+. +++ +.+. ....++++||
T Consensus 273 ~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 350 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSA 350 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCT
T ss_pred HHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcC
Confidence 4578999998 788763 21 2222322 46999999999998742 121 1111 1346899999
Q ss_pred cccccHHHHHHHHHHhc
Q psy7063 119 NMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L 135 (188)
++|.|+++|.+.|.+.+
T Consensus 351 ~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 351 LTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp TTCTTGGGHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999998888765
No 95
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.12 E-value=3.1e-06 Score=72.22 Aligned_cols=79 Identities=15% Similarity=-0.082 Sum_probs=52.7
Q ss_pred cccceeeEEE-EecCCch----HHHHHHHh---c--CCCCcEEEEEecCCCCChH---HHHHHhcC-------CCEEEEe
Q psy7063 58 SKLTLKNVLF-REDCNAD----ELIDVINA---N--RVYLPCIYAYNKIDQISIE---EVDRIARQ-------PNSVVVS 117 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d----d~~~~l~~---~--~~~kP~IlV~NKiDl~~~e---~l~~l~~~-------~~~vpIS 117 (188)
..+..+|++| ++|++.. .....+.. . ...+|+++|+||+|+.+.. ++...... ..++++|
T Consensus 228 ~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vS 307 (329)
T 3o47_A 228 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATC 307 (329)
T ss_dssp HHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECB
T ss_pred HHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEE
Confidence 3467899997 8888632 22222211 1 1368999999999997532 23221111 1378999
Q ss_pred ccccccHHHHHHHHHHhcc
Q psy7063 118 CNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 118 A~~~~gld~L~~~I~~~L~ 136 (188)
|++|.|+++|.+.|.+.+.
T Consensus 308 Ak~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 308 ATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp TTTTBTHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 96
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.12 E-value=3.5e-06 Score=62.68 Aligned_cols=76 Identities=18% Similarity=0.118 Sum_probs=51.5
Q ss_pred cceeeEEE-EecCCchH----HHH---HHHhcCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccccccH
Q psy7063 60 LTLKNVLF-REDCNADE----LID---VINANRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKLNL 124 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~---~l~~~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~gl 124 (188)
+.+||+++ +.|++..+ +.. .+.......|+++|+||+|+.+. ++...+. . ...++++||+++.|+
T Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 75 YRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNV 154 (168)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSS
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCH
Confidence 56889997 88887432 111 12111246899999999998642 2233332 1 235899999999999
Q ss_pred HHHHHHHHHhc
Q psy7063 125 DYLLDIIWLYL 135 (188)
Q Consensus 125 d~L~~~I~~~L 135 (188)
++|.+.|.+.+
T Consensus 155 ~~l~~~l~~~~ 165 (168)
T 1z2a_A 155 SEVFKYLAEKH 165 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 97
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.11 E-value=1.1e-06 Score=75.84 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=50.5
Q ss_pred ceeeEEE-EecCCchHHHHHHHhcCCCCcEEEEEecCCCCChHHH----HHHh------c------CCCEEEEecccccc
Q psy7063 61 TLKNVLF-REDCNADELIDVINANRVYLPCIYAYNKIDQISIEEV----DRIA------R------QPNSVVVSCNMKLN 123 (188)
Q Consensus 61 ~~ADvvl-~~D~s~dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~l----~~l~------~------~~~~vpISA~~~~g 123 (188)
..||+++ ++|.+..+....+......+|.++|+||+|+.+.... ..+. . ..+++++||++|.|
T Consensus 191 ~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~G 270 (355)
T 3p32_A 191 NMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRG 270 (355)
T ss_dssp TTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBS
T ss_pred HhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCC
Confidence 5677776 6776533211211111124799999999998754222 1121 1 24689999999999
Q ss_pred HHHHHHHHHHhccc
Q psy7063 124 LDYLLDIIWLYLSL 137 (188)
Q Consensus 124 ld~L~~~I~~~L~~ 137 (188)
+++|.+.|.+.+..
T Consensus 271 i~~L~~~i~~~~~~ 284 (355)
T 3p32_A 271 LAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988753
No 98
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.11 E-value=5.3e-06 Score=61.33 Aligned_cols=76 Identities=18% Similarity=0.058 Sum_probs=50.9
Q ss_pred cceeeEEE-EecCCchH----HHH---HHHh--cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LID---VINA--NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~---~l~~--~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~ 122 (188)
+.++|.++ ++|++..+ +.. .+.. .....|+++|+||+|+.+. ++...+. . ...++++||++|.
T Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 151 (167)
T 1kao_A 72 IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKT 151 (167)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHH
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCc
Confidence 56778887 78887532 111 1211 1236899999999998642 1222222 1 2358999999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|+++|.+.|.+.+
T Consensus 152 gi~~l~~~l~~~~ 164 (167)
T 1kao_A 152 MVDELFAEIVRQM 164 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 99
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.11 E-value=1.3e-05 Score=70.09 Aligned_cols=78 Identities=24% Similarity=0.179 Sum_probs=53.0
Q ss_pred ccceeeEEE-EecCCc----hHHHHHHHh--cCCCCcEEEEEecCCCCChHHH----HHHh----c----CCCEEEEecc
Q psy7063 59 KLTLKNVLF-REDCNA----DELIDVINA--NRVYLPCIYAYNKIDQISIEEV----DRIA----R----QPNSVVVSCN 119 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~----dd~~~~l~~--~~~~kP~IlV~NKiDl~~~e~l----~~l~----~----~~~~vpISA~ 119 (188)
++..||+++ ++|++. ++..+.+.. ....+|+++|+||+|+.+.++. +.+. . ...++++||+
T Consensus 95 ~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~ 174 (403)
T 3sjy_A 95 GAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSAL 174 (403)
T ss_dssp HHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTT
T ss_pred HHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECC
Confidence 467899997 788763 222222211 1123699999999999865432 1221 1 2358999999
Q ss_pred ccccHHHHHHHHHHhcc
Q psy7063 120 MKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~ 136 (188)
+|.|+++|.+.|.+.+.
T Consensus 175 ~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 175 HKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTBSHHHHHHHHHHHSC
T ss_pred CCcChHHHHHHHHHhCC
Confidence 99999999999998764
No 100
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.11 E-value=7.6e-06 Score=63.35 Aligned_cols=78 Identities=14% Similarity=0.011 Sum_probs=52.8
Q ss_pred ccceeeEEE-EecCCchHH-------HHHHHh-cC----CCCcEEEEEecCCCCCh----HHHHHHh---cCCCEEEEec
Q psy7063 59 KLTLKNVLF-REDCNADEL-------IDVINA-NR----VYLPCIYAYNKIDQISI----EEVDRIA---RQPNSVVVSC 118 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~-------~~~l~~-~~----~~kP~IlV~NKiDl~~~----e~l~~l~---~~~~~vpISA 118 (188)
.+.+||+++ ++|++..+. ...+.. .. ...|+++|+||+|+... ++...+. ....++++||
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (207)
T 1vg8_A 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSA 156 (207)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBT
T ss_pred HHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeC
Confidence 467899997 889874321 111111 11 35899999999998632 2233332 1235899999
Q ss_pred cccccHHHHHHHHHHhcc
Q psy7063 119 NMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L~ 136 (188)
++|.|+++|.+.|.+.+.
T Consensus 157 ~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 157 KEAINVEQAFQTIARNAL 174 (207)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887654
No 101
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.11 E-value=1.1e-05 Score=61.35 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=51.8
Q ss_pred cceeeEEE-EecCCchH----HHH---HHHh--cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecc-cc
Q psy7063 60 LTLKNVLF-REDCNADE----LID---VINA--NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCN-MK 121 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~---~l~~--~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~-~~ 121 (188)
+.++|+++ ++|++..+ +.. .+.. .....|+++|+||+|+.+. ++...+. . ...++++||+ ++
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (183)
T 3kkq_A 87 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPP 166 (183)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSC
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCC
Confidence 56789997 78887532 111 1111 2346899999999998642 2233332 1 2358999999 99
Q ss_pred ccHHHHHHHHHHhc
Q psy7063 122 LNLDYLLDIIWLYL 135 (188)
Q Consensus 122 ~gld~L~~~I~~~L 135 (188)
.|+++|.+.|.+.+
T Consensus 167 ~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 167 LNVDKTFHDLVRVI 180 (183)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999988765
No 102
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.11 E-value=6e-06 Score=65.41 Aligned_cols=80 Identities=13% Similarity=-0.065 Sum_probs=54.0
Q ss_pred hcccceeeEEE-EecCCchH-HH-------HHHHhcCCCCcEEEEEecCCCCCh-----------------HHHHHHh--
Q psy7063 57 PSKLTLKNVLF-REDCNADE-LI-------DVINANRVYLPCIYAYNKIDQISI-----------------EEVDRIA-- 108 (188)
Q Consensus 57 ~~~i~~ADvvl-~~D~s~dd-~~-------~~l~~~~~~kP~IlV~NKiDl~~~-----------------e~l~~l~-- 108 (188)
...+.+||+++ ++|++..+ +. ..+.......|+++|+||+|+.+. ++...+.
T Consensus 93 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 172 (214)
T 3q3j_B 93 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQ 172 (214)
T ss_dssp GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHH
Confidence 34578899997 88987432 11 122222346899999999998531 2222222
Q ss_pred -cCCCEEEEecccccc-HHHHHHHHHHhcc
Q psy7063 109 -RQPNSVVVSCNMKLN-LDYLLDIIWLYLS 136 (188)
Q Consensus 109 -~~~~~vpISA~~~~g-ld~L~~~I~~~L~ 136 (188)
....++.+||++|.| +++|.+.|.+.+-
T Consensus 173 ~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 173 LGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp HTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 232578999999998 9999999988753
No 103
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.10 E-value=7e-06 Score=63.84 Aligned_cols=78 Identities=9% Similarity=-0.007 Sum_probs=52.0
Q ss_pred ccceeeEEE-EecCCchHH----HHHHHh---c--CCCCcEEEEEecCCCCChH-----HHHHHh-c-CCCEEEEecccc
Q psy7063 59 KLTLKNVLF-REDCNADEL----IDVINA---N--RVYLPCIYAYNKIDQISIE-----EVDRIA-R-QPNSVVVSCNMK 121 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~----~~~l~~---~--~~~kP~IlV~NKiDl~~~e-----~l~~l~-~-~~~~vpISA~~~ 121 (188)
.+.+||+++ ++|++..+- ...+.. . ...+|+++|+||+|+.+.. +...+. . ...++++||++|
T Consensus 92 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (201)
T 3oes_A 92 FIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSAREN 171 (201)
T ss_dssp GTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCH
T ss_pred HHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCC
Confidence 467789997 889874321 111111 1 1368999999999986322 222222 1 235889999999
Q ss_pred ccHHHHHHHHHHhcc
Q psy7063 122 LNLDYLLDIIWLYLS 136 (188)
Q Consensus 122 ~gld~L~~~I~~~L~ 136 (188)
.|+++|.+.|.+.+.
T Consensus 172 ~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 172 QLTQGIFTKVIQEIA 186 (201)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988765
No 104
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.10 E-value=6e-06 Score=63.89 Aligned_cols=77 Identities=14% Similarity=0.056 Sum_probs=51.9
Q ss_pred ccceeeEEE-EecCCchHHH--------HHHHhcCCCCcEEEEEecCCCCCh-----------------HHHHHHh---c
Q psy7063 59 KLTLKNVLF-REDCNADELI--------DVINANRVYLPCIYAYNKIDQISI-----------------EEVDRIA---R 109 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~--------~~l~~~~~~kP~IlV~NKiDl~~~-----------------e~l~~l~---~ 109 (188)
.+.+||+++ ++|++..+-. ..+.......|+++|+||+|+... ++...+. .
T Consensus 88 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK 167 (201)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC
Confidence 467889987 8898743211 112222237899999999998632 1122222 2
Q ss_pred CCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 110 QPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 110 ~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
...++++||++|.|+++|.+.|.+.+
T Consensus 168 ~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 168 AASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 22589999999999999999887764
No 105
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.10 E-value=1.2e-05 Score=62.72 Aligned_cols=77 Identities=19% Similarity=0.153 Sum_probs=52.3
Q ss_pred cceeeEEE-EecCCchH----HHH---HHHhcC--CCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LID---VINANR--VYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~---~l~~~~--~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~~ 122 (188)
+.+||+++ ++|++..+ +.. .+.... ...|+++|+||+|+... ++...+. .. ..++++||++|.
T Consensus 94 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 94 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHH 173 (195)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTB
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCC
Confidence 56789987 88987432 111 222111 36899999999998642 2233332 12 258899999999
Q ss_pred cHHHHHHHHHHhcc
Q psy7063 123 NLDYLLDIIWLYLS 136 (188)
Q Consensus 123 gld~L~~~I~~~L~ 136 (188)
|+++|.+.|.+.+.
T Consensus 174 ~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 174 NTRELFEGAVRQIR 187 (195)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 106
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.09 E-value=5e-06 Score=61.55 Aligned_cols=76 Identities=18% Similarity=0.099 Sum_probs=50.9
Q ss_pred cceeeEEE-EecCCchHH----H---HHHHh--cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADEL----I---DVINA--NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~----~---~~l~~--~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~ 122 (188)
+.++|.++ ++|++..+- . ..+.. ....+|+++|+||+|+.+. ++...+. . ...++++||++|.
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T 1u8z_A 73 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRA 152 (168)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCC
Confidence 56788887 888874321 1 11211 1236899999999998642 2222222 1 2358999999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|+++|.+.|.+.+
T Consensus 153 gi~~l~~~l~~~i 165 (168)
T 1u8z_A 153 NVDKVFFDLMREI 165 (168)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999988764
No 107
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.09 E-value=1.8e-05 Score=60.56 Aligned_cols=79 Identities=10% Similarity=0.073 Sum_probs=52.4
Q ss_pred cccceeeEEE-EecCCchH----HH---HHHHh--cCCCCcEEEEEecCCCCCh----HHHHHHh-c-CCCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNADE----LI---DVINA--NRVYLPCIYAYNKIDQISI----EEVDRIA-R-QPNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd----~~---~~l~~--~~~~kP~IlV~NKiDl~~~----e~l~~l~-~-~~~~vpISA~~~ 121 (188)
..+..||+++ ++|++..+ +. ..+.. ....+|+++|+||+|+.+. ++...+. . ...++++||+++
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 167 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTR 167 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 3467889887 78877432 11 11211 1236899999999998642 2333332 1 125899999999
Q ss_pred ccHHHHHHHHHHhcc
Q psy7063 122 LNLDYLLDIIWLYLS 136 (188)
Q Consensus 122 ~gld~L~~~I~~~L~ 136 (188)
.|+++|.+.|.+.+.
T Consensus 168 ~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 168 QGVEDAFYTLVREIR 182 (190)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999887664
No 108
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.08 E-value=7.6e-06 Score=62.93 Aligned_cols=76 Identities=12% Similarity=-0.018 Sum_probs=51.2
Q ss_pred cceeeEEE-EecCCchHH----HH---HHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADEL----ID---VINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~----~~---~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~g 123 (188)
+.++|+++ ++|++...- .. .+.. .....|+++|+||+|+... ++...+. . ...++++||++|.|
T Consensus 95 ~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN 174 (193)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 56789887 889874321 11 2221 1236899999999998642 2222232 1 23589999999999
Q ss_pred HHHHHHHHHHhc
Q psy7063 124 LDYLLDIIWLYL 135 (188)
Q Consensus 124 ld~L~~~I~~~L 135 (188)
+++|.+.|.+.+
T Consensus 175 i~~l~~~l~~~i 186 (193)
T 2oil_A 175 VELAFETVLKEI 186 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
No 109
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.08 E-value=2.1e-06 Score=67.81 Aligned_cols=77 Identities=10% Similarity=-0.019 Sum_probs=51.9
Q ss_pred cceeeEEE-EecCCchHH-------HHHHHhcCCCCcEEEEEecCCCCChH---HHHHH-h-cCCCEEEEeccccccHHH
Q psy7063 60 LTLKNVLF-REDCNADEL-------IDVINANRVYLPCIYAYNKIDQISIE---EVDRI-A-RQPNSVVVSCNMKLNLDY 126 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~-------~~~l~~~~~~kP~IlV~NKiDl~~~e---~l~~l-~-~~~~~vpISA~~~~gld~ 126 (188)
+.++|+++ ++|++..+. ...+......+|+++|+||+|+.+.. +...+ . ....++++||++|.|+++
T Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 85 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK 164 (221)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTH
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 56789997 888874321 12222222478999999999986432 11111 1 123589999999999999
Q ss_pred HHHHHHHhcc
Q psy7063 127 LLDIIWLYLS 136 (188)
Q Consensus 127 L~~~I~~~L~ 136 (188)
|.+.|.+.+.
T Consensus 165 l~~~l~~~l~ 174 (221)
T 3gj0_A 165 PFLWLARKLI 174 (221)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888753
No 110
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.07 E-value=7.8e-06 Score=63.58 Aligned_cols=78 Identities=10% Similarity=0.010 Sum_probs=52.4
Q ss_pred ccceeeEEE-EecCCchHH-------HHHHHh-cCCCCcEEEEEecCCCCCh----HHHHHHh-c-CCCEEEEecccccc
Q psy7063 59 KLTLKNVLF-REDCNADEL-------IDVINA-NRVYLPCIYAYNKIDQISI----EEVDRIA-R-QPNSVVVSCNMKLN 123 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~-------~~~l~~-~~~~kP~IlV~NKiDl~~~----e~l~~l~-~-~~~~vpISA~~~~g 123 (188)
.+.+||+++ ++|++..+. ...+.. ....+|+++|+||+|+... +....+. . ...++++||++|.|
T Consensus 89 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 168 (213)
T 3cph_A 89 YYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDN 168 (213)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 367889987 888874321 122221 1236899999999998532 2233332 1 13589999999999
Q ss_pred HHHHHHHHHHhcc
Q psy7063 124 LDYLLDIIWLYLS 136 (188)
Q Consensus 124 ld~L~~~I~~~L~ 136 (188)
+++|.+.|.+.+.
T Consensus 169 i~~l~~~l~~~~~ 181 (213)
T 3cph_A 169 VNEIFFTLAKLIQ 181 (213)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887664
No 111
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.07 E-value=4.9e-07 Score=69.27 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=50.4
Q ss_pred cceeeEEE-EecCCc----hH--HHHHHHh-cCCCCcEEEEEecCCCCChH-HHHHHhcCCCEEEEeccccccHHHHHHH
Q psy7063 60 LTLKNVLF-REDCNA----DE--LIDVINA-NRVYLPCIYAYNKIDQISIE-EVDRIARQPNSVVVSCNMKLNLDYLLDI 130 (188)
Q Consensus 60 i~~ADvvl-~~D~s~----dd--~~~~l~~-~~~~kP~IlV~NKiDl~~~e-~l~~l~~~~~~vpISA~~~~gld~L~~~ 130 (188)
+.+||+++ ++|++. ++ ....+.. ....+|+++|+||+|+.... ..... ....++++||++|.|+++|.+.
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~-~~~~~~~~SA~~g~gv~~l~~~ 159 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEV-NGHALIRLSARTGEGVDVLRNH 159 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEE-TTEEEEECCTTTCTTHHHHHHH
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhhhhhc-cCCceEEEeCCCCCCHHHHHHH
Confidence 68899997 788752 11 1122222 22368999999999985321 11000 1224789999999999999999
Q ss_pred HHHhcc
Q psy7063 131 IWLYLS 136 (188)
Q Consensus 131 I~~~L~ 136 (188)
|.+.+.
T Consensus 160 l~~~~~ 165 (172)
T 2gj8_A 160 LKQSMG 165 (172)
T ss_dssp HHHHC-
T ss_pred HHHHhh
Confidence 998875
No 112
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.07 E-value=5.6e-06 Score=62.35 Aligned_cols=77 Identities=16% Similarity=0.031 Sum_probs=51.0
Q ss_pred cceeeEEE-EecCCchHHH-------HHHHhc---CCCCc-EEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccc
Q psy7063 60 LTLKNVLF-REDCNADELI-------DVINAN---RVYLP-CIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNM 120 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~-------~~l~~~---~~~kP-~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~ 120 (188)
+.+||+++ ++|++..+-. ..+... ....| +++|+||+|+.+. ++...+. . ...++++||++
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (178)
T 2hxs_A 77 IYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKT 156 (178)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTT
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCC
Confidence 57899997 8898753211 112110 12466 7899999998642 2233332 1 12589999999
Q ss_pred cccHHHHHHHHHHhcc
Q psy7063 121 KLNLDYLLDIIWLYLS 136 (188)
Q Consensus 121 ~~gld~L~~~I~~~L~ 136 (188)
|.|+++|.+.|.+.+.
T Consensus 157 ~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 157 GDSVFLCFQKVAAEIL 172 (178)
T ss_dssp CTTHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 113
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.07 E-value=1.6e-05 Score=70.62 Aligned_cols=71 Identities=14% Similarity=0.006 Sum_probs=44.9
Q ss_pred ccceeeEEE-EecCCch----------HHHHHHH-hcCCCCc-EEEEEecCCCCCh----HHH-------HHHh---cC-
Q psy7063 59 KLTLKNVLF-REDCNAD----------ELIDVIN-ANRVYLP-CIYAYNKIDQISI----EEV-------DRIA---RQ- 110 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d----------d~~~~l~-~~~~~kP-~IlV~NKiDl~~~----e~l-------~~l~---~~- 110 (188)
++..||+++ ++|++.. +..+.+. .....+| +|+|+||+|+... +.. ..+. .+
T Consensus 115 ~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~ 194 (439)
T 3j2k_7 115 GASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFN 194 (439)
T ss_pred hHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhccc
Confidence 477899997 8888642 2222221 1223566 8999999998631 111 1111 11
Q ss_pred ----CCEEEEeccccccHHHHHH
Q psy7063 111 ----PNSVVVSCNMKLNLDYLLD 129 (188)
Q Consensus 111 ----~~~vpISA~~~~gld~L~~ 129 (188)
..++|+||++|.|+++|.+
T Consensus 195 ~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 195 PKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccCCeeEEEeeccCCcccccccc
Confidence 2489999999999998655
No 114
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.06 E-value=1.3e-05 Score=61.85 Aligned_cols=78 Identities=18% Similarity=0.080 Sum_probs=52.0
Q ss_pred cceeeEEE-EecCCchH----HH---HHHHhc--CCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LI---DVINAN--RVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~---~~l~~~--~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~ 122 (188)
+.++|+++ ++|++..+ .. ..+... ...+|+++|+||+|+.+. ++...+. . ...++++||++|.
T Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 162 (206)
T 2bov_A 83 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRA 162 (206)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCC
Confidence 56788887 78887432 11 122211 236899999999998642 2222222 1 2358999999999
Q ss_pred cHHHHHHHHHHhccc
Q psy7063 123 NLDYLLDIIWLYLSL 137 (188)
Q Consensus 123 gld~L~~~I~~~L~~ 137 (188)
|+++|.+.|.+.+..
T Consensus 163 gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 163 NVDKVFFDLMREIRA 177 (206)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999998887643
No 115
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.06 E-value=9.3e-06 Score=63.31 Aligned_cols=77 Identities=16% Similarity=-0.052 Sum_probs=51.6
Q ss_pred ccceeeEEE-EecCCchH----HHH---HHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LID---VINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~---~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~ 122 (188)
.+.+||+++ ++|++..+ +.. .+.. .....|+++|+||+|+... ++...+. . ...++++||++|.
T Consensus 94 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 173 (200)
T 2o52_A 94 YYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGE 173 (200)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 367789987 88987432 111 1211 2246899999999998532 2222222 1 2348899999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|+++|.+.|.+.+
T Consensus 174 gi~~l~~~l~~~i 186 (200)
T 2o52_A 174 NVEEAFLKCARTI 186 (200)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999888765
No 116
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.04 E-value=4.7e-06 Score=62.97 Aligned_cols=75 Identities=19% Similarity=0.159 Sum_probs=50.3
Q ss_pred ceeeEEE-EecCCchH-HHHHHHh-cCCCCcEEEEEecCCCCChH----HHHHHh-c-CCCEEEEeccccccHHHHHHHH
Q psy7063 61 TLKNVLF-REDCNADE-LIDVINA-NRVYLPCIYAYNKIDQISIE----EVDRIA-R-QPNSVVVSCNMKLNLDYLLDII 131 (188)
Q Consensus 61 ~~ADvvl-~~D~s~dd-~~~~l~~-~~~~kP~IlV~NKiDl~~~e----~l~~l~-~-~~~~vpISA~~~~gld~L~~~I 131 (188)
.++|+++ +.|++..+ ....+.. ....+|+++|+||+|+.... +.+.+. . ...++++||++|.|+++|.+.|
T Consensus 80 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l 159 (165)
T 2wji_A 80 EKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAI 159 (165)
T ss_dssp HCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHH
T ss_pred CCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHH
Confidence 4789987 88987432 2221111 12468999999999975321 122232 1 1358999999999999999999
Q ss_pred HHhc
Q psy7063 132 WLYL 135 (188)
Q Consensus 132 ~~~L 135 (188)
.+.+
T Consensus 160 ~~~~ 163 (165)
T 2wji_A 160 SIAV 163 (165)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8765
No 117
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.04 E-value=5.7e-06 Score=64.68 Aligned_cols=78 Identities=8% Similarity=0.030 Sum_probs=53.3
Q ss_pred ccceeeEEE-EecCCchHH-H-------HHHHhcCCCCcEEEEEecCCCCChH-------------HHHHHh---cCCCE
Q psy7063 59 KLTLKNVLF-REDCNADEL-I-------DVINANRVYLPCIYAYNKIDQISIE-------------EVDRIA---RQPNS 113 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~-~-------~~l~~~~~~kP~IlV~NKiDl~~~e-------------~l~~l~---~~~~~ 113 (188)
.+.+||+++ ++|++..+- . ..+.......|+++|+||+|+.... +...+. ....+
T Consensus 77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAY 156 (212)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEE
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceE
Confidence 467899997 889874331 1 1222222378999999999986421 222222 22358
Q ss_pred EEEeccccccHHHHHHHHHHhcc
Q psy7063 114 VVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 114 vpISA~~~~gld~L~~~I~~~L~ 136 (188)
+++||++|.|+++|.+.|.+.+.
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 157 IECSSKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEccCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 118
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.03 E-value=1.7e-05 Score=60.80 Aligned_cols=77 Identities=14% Similarity=0.035 Sum_probs=49.6
Q ss_pred ccceeeEEE-EecCCchH----HH---HHHHhc--CCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LI---DVINAN--RVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMK 121 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~---~~l~~~--~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~ 121 (188)
.+.+||+++ ++|++..+ +. ..+... ...+|+++|+||+|+.+. +....+. .. ..++++||+++
T Consensus 90 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 90 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP 169 (189)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSG
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcC
Confidence 367899997 88987432 11 122221 346899999999998642 2233332 12 35899999999
Q ss_pred ---ccHHHHHHHHHHhc
Q psy7063 122 ---LNLDYLLDIIWLYL 135 (188)
Q Consensus 122 ---~gld~L~~~I~~~L 135 (188)
.|++++.+.|.+.+
T Consensus 170 ~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 170 NDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp GGGSCHHHHHHHHC---
T ss_pred CcccCHHHHHHHHHHHH
Confidence 88888888876654
No 119
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.03 E-value=1.1e-05 Score=61.82 Aligned_cols=77 Identities=10% Similarity=-0.033 Sum_probs=51.6
Q ss_pred ccceeeEEE-EecCCchHH-H-------HHHHhcCCCCcEEEEEecCCCCCh-----------------HHHHHHh---c
Q psy7063 59 KLTLKNVLF-REDCNADEL-I-------DVINANRVYLPCIYAYNKIDQISI-----------------EEVDRIA---R 109 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~-~-------~~l~~~~~~kP~IlV~NKiDl~~~-----------------e~l~~l~---~ 109 (188)
.+.+||+++ ++|++..+- . ..+.......|+++|+||+|+... ++...+. .
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 154 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 154 (184)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC
Confidence 468899987 889874321 1 122222246899999999998631 2222232 2
Q ss_pred CCCEEEEecc-ccccHHHHHHHHHHhc
Q psy7063 110 QPNSVVVSCN-MKLNLDYLLDIIWLYL 135 (188)
Q Consensus 110 ~~~~vpISA~-~~~gld~L~~~I~~~L 135 (188)
...++++||+ ++.|+++|.+.|.+.+
T Consensus 155 ~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 155 AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 2358899999 6899999999887653
No 120
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.02 E-value=1.4e-05 Score=60.33 Aligned_cols=77 Identities=18% Similarity=0.085 Sum_probs=51.2
Q ss_pred cceeeEEE-EecCCchH----HH---HHHHh--cCCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LI---DVINA--NRVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~---~~l~~--~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~~ 122 (188)
+.++|+++ ++|++..+ .. ..+.. ....+|+++|+||+|+.+. ++...+. .. ..++++||+++.
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (187)
T 2a9k_A 87 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRA 166 (187)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCC
Confidence 56788887 78887432 11 11211 1236899999999998642 2222222 22 358999999999
Q ss_pred cHHHHHHHHHHhcc
Q psy7063 123 NLDYLLDIIWLYLS 136 (188)
Q Consensus 123 gld~L~~~I~~~L~ 136 (188)
|+++|.+.|.+.+.
T Consensus 167 gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 167 NVDKVFFDLMREIR 180 (187)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999887653
No 121
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.01 E-value=6.3e-06 Score=64.01 Aligned_cols=76 Identities=13% Similarity=0.055 Sum_probs=49.2
Q ss_pred cceeeEEE-EecCCchH----HH---HHHHh-cCCCCcEEEEEecCCCCCh-----------HHHHHHh-c-CCCEEEEe
Q psy7063 60 LTLKNVLF-REDCNADE----LI---DVINA-NRVYLPCIYAYNKIDQISI-----------EEVDRIA-R-QPNSVVVS 117 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~---~~l~~-~~~~kP~IlV~NKiDl~~~-----------e~l~~l~-~-~~~~vpIS 117 (188)
+.+||+++ ++|++..+ +. ..+.. .....|+++|+||+|+... +....+. . ...++++|
T Consensus 98 ~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~S 177 (199)
T 2p5s_A 98 FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETS 177 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECC
T ss_pred HhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEee
Confidence 56789987 88987432 11 12222 1236899999999998521 1122221 1 12478999
Q ss_pred ccccccHHHHHHHHHHhc
Q psy7063 118 CNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 118 A~~~~gld~L~~~I~~~L 135 (188)
|++|.|+++|.+.|.+.+
T Consensus 178 A~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 178 AKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999988765
No 122
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.01 E-value=1.1e-05 Score=63.85 Aligned_cols=79 Identities=14% Similarity=-0.039 Sum_probs=50.5
Q ss_pred cccceeeEEE-EecCCchHHH-------HHHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNADELI-------DVINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~~-------~~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~ 121 (188)
..+..||++| ++|++..+-. ..+.. ....+|+++|+||+|+... ++...+. . ...++++||+++
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS 160 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 3467899887 8898743211 12221 1236899999999998642 2233332 2 235788999999
Q ss_pred ccHHHHHHHHHHhcc
Q psy7063 122 LNLDYLLDIIWLYLS 136 (188)
Q Consensus 122 ~gld~L~~~I~~~L~ 136 (188)
.|+++|.+.|.+.+.
T Consensus 161 ~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 161 ENVDKAFEELINTIY 175 (223)
T ss_dssp CCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 123
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.01 E-value=7.4e-06 Score=65.28 Aligned_cols=83 Identities=13% Similarity=0.097 Sum_probs=53.4
Q ss_pred cceeeEEE-EecCCch------HH---HHHHHhcCCCCcEEEEEecCCCCChHH--------HHHHh-cC---CCEEEEe
Q psy7063 60 LTLKNVLF-REDCNAD------EL---IDVINANRVYLPCIYAYNKIDQISIEE--------VDRIA-RQ---PNSVVVS 117 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d------d~---~~~l~~~~~~kP~IlV~NKiDl~~~e~--------l~~l~-~~---~~~vpIS 117 (188)
...+|+++ ++|++.. .. ...+......+|+++|+||+|+..... +..+. .. ..++++|
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 185 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFS 185 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECC
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 46678876 7887632 11 122222113689999999999874321 12222 12 3579999
Q ss_pred ccccccHHHHHHHHHHhcccceeee
Q psy7063 118 CNMKLNLDYLLDIIWLYLSLIRVYT 142 (188)
Q Consensus 118 A~~~~gld~L~~~I~~~L~~irVY~ 142 (188)
|++|.|+++|.+.|.+.+...++++
T Consensus 186 A~~g~gi~~l~~~l~~~i~~~~~~~ 210 (228)
T 2qu8_A 186 TLTGVGVEQAKITACELLKNDQAES 210 (228)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988876555443
No 124
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.99 E-value=6.5e-06 Score=69.57 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=48.4
Q ss_pred ccceeeEEE-EecCCch----HHH-HHHHh-cCCCCcEEEEEecCCCCChHH---HHHH---h-cC-CCEEEEecccccc
Q psy7063 59 KLTLKNVLF-REDCNAD----ELI-DVINA-NRVYLPCIYAYNKIDQISIEE---VDRI---A-RQ-PNSVVVSCNMKLN 123 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d----d~~-~~l~~-~~~~kP~IlV~NKiDl~~~e~---l~~l---~-~~-~~~vpISA~~~~g 123 (188)
.+.+||+++ ++|++.+ +.+ ..+.. ....+|.++|+||+|+.+... .+.+ + .. .+++++||++|.|
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~g 155 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEG 155 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 489999997 8887632 111 22211 125699999999999986531 2222 1 22 2589999999999
Q ss_pred HHHHHHHH
Q psy7063 124 LDYLLDII 131 (188)
Q Consensus 124 ld~L~~~I 131 (188)
+++|.+.+
T Consensus 156 i~~L~~~l 163 (302)
T 2yv5_A 156 IDELVDYL 163 (302)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhc
Confidence 99876544
No 125
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.99 E-value=2.1e-06 Score=66.83 Aligned_cols=78 Identities=12% Similarity=0.007 Sum_probs=44.8
Q ss_pred ccceeeEEE-EecCCchH----HHHH---HHhc-CCCCcEEEEEecCCCCChH-----HHHHHh-c-CCCEEEEeccccc
Q psy7063 59 KLTLKNVLF-REDCNADE----LIDV---INAN-RVYLPCIYAYNKIDQISIE-----EVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~~~~---l~~~-~~~kP~IlV~NKiDl~~~e-----~l~~l~-~-~~~~vpISA~~~~ 122 (188)
.+.+||+++ ++|++..+ +... +... ....|+++|+||+|+.+.. +...+. . ...++++||++|.
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 181 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNAT 181 (199)
T ss_dssp --CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---H
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 467889987 78887432 1111 2211 1368999999999986432 222222 2 1358889999999
Q ss_pred cHHHHHHHHHHhcc
Q psy7063 123 NLDYLLDIIWLYLS 136 (188)
Q Consensus 123 gld~L~~~I~~~L~ 136 (188)
|+++|.+.|.+.+.
T Consensus 182 gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 182 NVEQSFMTMAAEIK 195 (199)
T ss_dssp HHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999887653
No 126
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.98 E-value=1.2e-06 Score=72.88 Aligned_cols=73 Identities=16% Similarity=0.113 Sum_probs=51.0
Q ss_pred cceeeEEE-EecCCchHHHH--HHHhcCCCCcEEEEEecCCCCChHHHHHH----hcC-CCEEEEeccccccHHHHHHHH
Q psy7063 60 LTLKNVLF-REDCNADELID--VINANRVYLPCIYAYNKIDQISIEEVDRI----ARQ-PNSVVVSCNMKLNLDYLLDII 131 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~~--~l~~~~~~kP~IlV~NKiDl~~~e~l~~l----~~~-~~~vpISA~~~~gld~L~~~I 131 (188)
+.++|+++ ++|+..+.... .+. .. .+|.++|+||+|+.+.+..+.+ ... .++ ++||.++.|+++|.+.+
T Consensus 19 l~~~D~vl~VvDar~P~~~~~~~l~-ll-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l 95 (262)
T 3cnl_A 19 LRLVNTVVEVRDARAPFATSAYGVD-FS-RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLS 95 (262)
T ss_dssp HTTCSEEEEEEETTSTTTTSCTTSC-CT-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHC
T ss_pred HhhCCEEEEEeeCCCCCcCcChHHH-hc-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHH
Confidence 78999998 88876332110 111 12 7999999999999876543222 222 246 99999999999999888
Q ss_pred HHhc
Q psy7063 132 WLYL 135 (188)
Q Consensus 132 ~~~L 135 (188)
.+.+
T Consensus 96 ~~~~ 99 (262)
T 3cnl_A 96 FDRL 99 (262)
T ss_dssp CCTT
T ss_pred HHhh
Confidence 7664
No 127
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.98 E-value=3.1e-05 Score=67.74 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=53.4
Q ss_pred cccceeeEEE-EecCCc----hHHHHHHHh--cCCCCcEEEEEecCCCCChHH----HHHH---h-c----CCCEEEEec
Q psy7063 58 SKLTLKNVLF-REDCNA----DELIDVINA--NRVYLPCIYAYNKIDQISIEE----VDRI---A-R----QPNSVVVSC 118 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~----dd~~~~l~~--~~~~kP~IlV~NKiDl~~~e~----l~~l---~-~----~~~~vpISA 118 (188)
.++..||+++ ++|++. .+..+.+.. ....+|+++|+||+|+.+.+. .+++ . . ..+++++||
T Consensus 102 ~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA 181 (410)
T 1kk1_A 102 AGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISA 181 (410)
T ss_dssp HCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred hhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeC
Confidence 3577899997 888862 222222211 112368999999999986432 1222 1 1 235899999
Q ss_pred cccccHHHHHHHHHHhcc
Q psy7063 119 NMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L~ 136 (188)
++|.|+++|.+.|.+.++
T Consensus 182 ~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 182 LHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp TTTBSHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999998665
No 128
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.98 E-value=3.7e-05 Score=67.25 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=47.3
Q ss_pred cccceeeEEE-EecCCc----hHHHHHHHh--cCCCCcEEEEEecCCCCChH-------HHHHHh-c----CCCEEEEec
Q psy7063 58 SKLTLKNVLF-REDCNA----DELIDVINA--NRVYLPCIYAYNKIDQISIE-------EVDRIA-R----QPNSVVVSC 118 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~----dd~~~~l~~--~~~~kP~IlV~NKiDl~~~e-------~l~~l~-~----~~~~vpISA 118 (188)
.++..||+++ ++|++. .+..+.+.. ....+|+++|+||+|+.+.+ ++..+. . ...++++||
T Consensus 100 ~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA 179 (408)
T 1s0u_A 100 SGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISA 179 (408)
T ss_dssp TTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC--
T ss_pred HhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeC
Confidence 3577899997 888872 222222211 12236899999999997532 122221 1 235899999
Q ss_pred cccccHHHHHHHHHHhcc
Q psy7063 119 NMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L~ 136 (188)
++|.|+++|.+.|.+.+.
T Consensus 180 ~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 180 HHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp ----CHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999998665
No 129
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.98 E-value=1.4e-05 Score=59.45 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=51.1
Q ss_pred cceeeEEE-EecCCchH-------HHHHHHhc---CCCCcEEEEEecCCCCChH-----HHHHHh-c-CCCEEEEecccc
Q psy7063 60 LTLKNVLF-REDCNADE-------LIDVINAN---RVYLPCIYAYNKIDQISIE-----EVDRIA-R-QPNSVVVSCNMK 121 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd-------~~~~l~~~---~~~kP~IlV~NKiDl~~~e-----~l~~l~-~-~~~~vpISA~~~ 121 (188)
+..+|+++ ++|++..+ ....+... ...+|+++|+||+|+.+.. +...+. . ...++++||++|
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (172)
T 2erx_A 72 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLN 151 (172)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred cccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCC
Confidence 46688887 78887432 11222211 1368999999999986431 222221 1 124799999999
Q ss_pred ccHHHHHHHHHHhcc
Q psy7063 122 LNLDYLLDIIWLYLS 136 (188)
Q Consensus 122 ~gld~L~~~I~~~L~ 136 (188)
.|+++|.+.|.+.+.
T Consensus 152 ~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 152 HNVKELFQELLNLEK 166 (172)
T ss_dssp BSHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999998765
No 130
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.98 E-value=1.8e-05 Score=63.78 Aligned_cols=77 Identities=17% Similarity=0.069 Sum_probs=51.6
Q ss_pred cceeeEEE-EecCCchHHH-------HHHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADELI-------DVINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~-------~~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~g 123 (188)
+++||+++ +.|++..+-. ..+.. .....|+++|+||+|+... ++...+. . ....+.+||++|.|
T Consensus 83 ~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~n 162 (216)
T 4dkx_A 83 IRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 162 (216)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBS
T ss_pred hccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcC
Confidence 57888887 7888743211 11211 2246899999999998642 2333332 1 12478899999999
Q ss_pred HHHHHHHHHHhcc
Q psy7063 124 LDYLLDIIWLYLS 136 (188)
Q Consensus 124 ld~L~~~I~~~L~ 136 (188)
++++.+.|.+.+.
T Consensus 163 V~e~F~~i~~~i~ 175 (216)
T 4dkx_A 163 VKQLFRRVAAALP 175 (216)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887764
No 131
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.96 E-value=1.1e-05 Score=62.38 Aligned_cols=76 Identities=13% Similarity=0.060 Sum_probs=51.2
Q ss_pred cceeeEEE-EecCCchH----H---HHHHHh--cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADE----L---IDVINA--NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~---~~~l~~--~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~ 122 (188)
+.+||+++ ++|++..+ + ...+.. .....|+++|+||+|+... ++...+. . ...++++||++|.
T Consensus 96 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~ 175 (196)
T 2atv_A 96 MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGE 175 (196)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCT
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCC
Confidence 56788887 88987532 1 112221 1246899999999998642 2222232 1 2358999999999
Q ss_pred -cHHHHHHHHHHhc
Q psy7063 123 -NLDYLLDIIWLYL 135 (188)
Q Consensus 123 -gld~L~~~I~~~L 135 (188)
|+++|.+.|.+.+
T Consensus 176 ~gi~~l~~~l~~~i 189 (196)
T 2atv_A 176 GNITEIFYELCREV 189 (196)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 9999999988765
No 132
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.96 E-value=4.5e-06 Score=70.37 Aligned_cols=78 Identities=13% Similarity=0.156 Sum_probs=51.3
Q ss_pred hhhcccceeeEEE-EecCCchH----HH-HHHHh-cCCCCcEEEEEecCCCCChHH---HHHHh---cC-CCEEEEeccc
Q psy7063 55 TLPSKLTLKNVLF-REDCNADE----LI-DVINA-NRVYLPCIYAYNKIDQISIEE---VDRIA---RQ-PNSVVVSCNM 120 (188)
Q Consensus 55 ~~~~~i~~ADvvl-~~D~s~dd----~~-~~l~~-~~~~kP~IlV~NKiDl~~~e~---l~~l~---~~-~~~vpISA~~ 120 (188)
+....+.+||++| ++|++..+ .. ..+.. ....+|+++|+||+|+.+... ...+. .. ..++++||++
T Consensus 77 l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAkt 156 (301)
T 1u0l_A 77 LTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKT 156 (301)
T ss_dssp ETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTT
T ss_pred eeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCC
Confidence 3345589999998 88876321 11 11211 124689999999999986533 22221 21 3589999999
Q ss_pred cccHHHHHHHHH
Q psy7063 121 KLNLDYLLDIIW 132 (188)
Q Consensus 121 ~~gld~L~~~I~ 132 (188)
|.|+++|.+.+.
T Consensus 157 g~gv~~lf~~l~ 168 (301)
T 1u0l_A 157 GMGIEELKEYLK 168 (301)
T ss_dssp CTTHHHHHHHHS
T ss_pred CcCHHHHHHHhc
Confidence 999998776554
No 133
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.96 E-value=1.8e-05 Score=60.69 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=52.5
Q ss_pred cceeeEEE-EecCCchH-------HHHHHHhc---CCCCcEEEEEecCCCCCh----HHHHHHh-c-CCCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADE-------LIDVINAN---RVYLPCIYAYNKIDQISI----EEVDRIA-R-QPNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd-------~~~~l~~~---~~~kP~IlV~NKiDl~~~----e~l~~l~-~-~~~~vpISA~~~~ 122 (188)
+.++|+++ ++|++..+ ....+... ....|+++|+||+|+... ++...+. . ...++++||++|.
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (199)
T 2gf0_A 77 ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNY 156 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCC
Confidence 56788887 78887432 11222211 135899999999998642 2222222 1 1248999999999
Q ss_pred cHHHHHHHHHHhccc
Q psy7063 123 NLDYLLDIIWLYLSL 137 (188)
Q Consensus 123 gld~L~~~I~~~L~~ 137 (188)
|+++|.+.|.+.+..
T Consensus 157 gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 157 NVKELFQELLTLETR 171 (199)
T ss_dssp SHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999987753
No 134
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.95 E-value=1.5e-05 Score=73.73 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=44.7
Q ss_pred cccceeeEEE-EecCCch----------HHHHHHH-hcCCC-CcEEEEEecCCCCCh--HH-------HHHHh---c---
Q psy7063 58 SKLTLKNVLF-REDCNAD----------ELIDVIN-ANRVY-LPCIYAYNKIDQISI--EE-------VDRIA---R--- 109 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~d----------d~~~~l~-~~~~~-kP~IlV~NKiDl~~~--e~-------l~~l~---~--- 109 (188)
.++..||++| ++|++.. ...+.+. ..... +|+|+|+||+|+.+. .. +..+. .
T Consensus 264 ~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~ 343 (611)
T 3izq_1 264 MGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFE 343 (611)
T ss_dssp TTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccc
Confidence 4588899998 8998753 2222221 11223 459999999999861 11 11111 1
Q ss_pred -CCCEEEEeccccccHHHH
Q psy7063 110 -QPNSVVVSCNMKLNLDYL 127 (188)
Q Consensus 110 -~~~~vpISA~~~~gld~L 127 (188)
...++++||++|.|+++|
T Consensus 344 ~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 344 DNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp GGCEEEECCTTTCTTTSSC
T ss_pred cCccEEeeecccCCCcccc
Confidence 135899999999999866
No 135
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.95 E-value=2.8e-05 Score=71.90 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=53.3
Q ss_pred ccceeeEEE-EecCCc----hHHHHHHHhcCCCCcEEEEEecCCCCCh--HH-HHHHh---cC--CCEEEEeccccccHH
Q psy7063 59 KLTLKNVLF-REDCNA----DELIDVINANRVYLPCIYAYNKIDQISI--EE-VDRIA---RQ--PNSVVVSCNMKLNLD 125 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~----dd~~~~l~~~~~~kP~IlV~NKiDl~~~--e~-l~~l~---~~--~~~vpISA~~~~gld 125 (188)
.+..||.++ ++|++. .............+|+|+|+||+|+.+. +. .+.+. .. .+++++||++|.|++
T Consensus 91 ~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~ 170 (599)
T 3cb4_D 91 SLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQ 170 (599)
T ss_dssp HHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCTTHH
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCCCch
Confidence 367789887 888763 1211111112246899999999999742 22 23332 22 258999999999999
Q ss_pred HHHHHHHHhcc
Q psy7063 126 YLLDIIWLYLS 136 (188)
Q Consensus 126 ~L~~~I~~~L~ 136 (188)
+|++.|.+.++
T Consensus 171 ~Ll~~I~~~lp 181 (599)
T 3cb4_D 171 DVLERLVRDIP 181 (599)
T ss_dssp HHHHHHHHHSC
T ss_pred hHHHHHhhcCC
Confidence 99999998875
No 136
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.94 E-value=4.6e-05 Score=60.96 Aligned_cols=78 Identities=14% Similarity=0.046 Sum_probs=50.2
Q ss_pred ccceeeEEE-EecCCchH----H---HHHHHhc--CCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEecccc
Q psy7063 59 KLTLKNVLF-REDCNADE----L---IDVINAN--RVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMK 121 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd----~---~~~l~~~--~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~ 121 (188)
-.+.||..+ ++|++..+ + ...+... ...+|+|+|+||+|+... ++...+. .+ ..++++||++|
T Consensus 108 ~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g 187 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQ 187 (211)
T ss_dssp CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCC
Confidence 356677776 77876432 1 1122211 136899999999998632 1112221 11 24789999999
Q ss_pred ccHHHHHHHHHHhcc
Q psy7063 122 LNLDYLLDIIWLYLS 136 (188)
Q Consensus 122 ~gld~L~~~I~~~L~ 136 (188)
.|+++|.+.|.+.+.
T Consensus 188 ~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 188 HNVKELFEGIVRQVR 202 (211)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988653
No 137
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.92 E-value=2e-05 Score=62.13 Aligned_cols=78 Identities=10% Similarity=-0.041 Sum_probs=51.6
Q ss_pred cccceeeEEE-EecCCchHH-H-------HHHHhcCCCCcEEEEEecCCCCCh-----------------HHHHHHh---
Q psy7063 58 SKLTLKNVLF-REDCNADEL-I-------DVINANRVYLPCIYAYNKIDQISI-----------------EEVDRIA--- 108 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd~-~-------~~l~~~~~~kP~IlV~NKiDl~~~-----------------e~l~~l~--- 108 (188)
..+.+||+++ ++|++..+- . ..+.......|+++|+||+|+... ++...+.
T Consensus 95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 174 (205)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence 3468899987 889874321 1 122222246899999999998631 1222222
Q ss_pred cCCCEEEEecc-ccccHHHHHHHHHHhc
Q psy7063 109 RQPNSVVVSCN-MKLNLDYLLDIIWLYL 135 (188)
Q Consensus 109 ~~~~~vpISA~-~~~gld~L~~~I~~~L 135 (188)
....++++||+ ++.|+++|.+.|.+.+
T Consensus 175 ~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 175 GAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 22358899999 6899999999887653
No 138
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.91 E-value=8.3e-06 Score=67.29 Aligned_cols=72 Identities=11% Similarity=0.138 Sum_probs=51.5
Q ss_pred ceeeEEE-EecCCchH----HHHHHHhcCCCCcEEEEEecCCCCChH----HHHHHhc--CCCEEEEeccccccHHHHHH
Q psy7063 61 TLKNVLF-REDCNADE----LIDVINANRVYLPCIYAYNKIDQISIE----EVDRIAR--QPNSVVVSCNMKLNLDYLLD 129 (188)
Q Consensus 61 ~~ADvvl-~~D~s~dd----~~~~l~~~~~~kP~IlV~NKiDl~~~e----~l~~l~~--~~~~vpISA~~~~gld~L~~ 129 (188)
.++|+++ ++|++..+ +..++ ....+|+++|+||+|+.... ....+.. ..+++++||++|.|+++|.+
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~l--~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~ 159 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQL--FELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQ 159 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHHH--TTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHH
T ss_pred CCCCEEEEEeeCCCchhHHHHHHHH--HHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence 7899998 89987532 12222 23479999999999986332 1233321 13599999999999999999
Q ss_pred HHHHh
Q psy7063 130 IIWLY 134 (188)
Q Consensus 130 ~I~~~ 134 (188)
.|.+.
T Consensus 160 ~i~~~ 164 (256)
T 3iby_A 160 SLLHC 164 (256)
T ss_dssp HHHTC
T ss_pred HHHhh
Confidence 99876
No 139
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.90 E-value=2e-05 Score=65.43 Aligned_cols=79 Identities=13% Similarity=0.016 Sum_probs=53.1
Q ss_pred hcccceeeEEE-EecCCchHH-H-------HHHHhcCCCCcEEEEEecCCCCChH-----------------HHHHHh--
Q psy7063 57 PSKLTLKNVLF-REDCNADEL-I-------DVINANRVYLPCIYAYNKIDQISIE-----------------EVDRIA-- 108 (188)
Q Consensus 57 ~~~i~~ADvvl-~~D~s~dd~-~-------~~l~~~~~~kP~IlV~NKiDl~~~e-----------------~l~~l~-- 108 (188)
...+.+||+++ ++|++..+- . ..+......+|+++|+||+|+.+.. +...+.
T Consensus 221 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 300 (332)
T 2wkq_A 221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 300 (332)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHH
Confidence 34578899997 889875321 1 2222222378999999999985421 111121
Q ss_pred -cCCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 109 -RQPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 109 -~~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
....++++||++|.|+++|.+.|.+.+
T Consensus 301 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 301 IGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 122589999999999999999988764
No 140
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.88 E-value=1.6e-05 Score=75.56 Aligned_cols=105 Identities=8% Similarity=-0.071 Sum_probs=64.7
Q ss_pred cceeEEEccCCccch---hchh---hHHHHHHhhhhhcccceeeEEE-EecCCc----hHHHHHHHh-cCCCCcEEEEEe
Q psy7063 27 WSKGTFQSYTSSINR---HYYY---KSARAYEADTLPSKLTLKNVLF-REDCNA----DELIDVINA-NRVYLPCIYAYN 94 (188)
Q Consensus 27 ~~~~~~~~~~~~ln~---~l~~---~~~~a~~~~~~~~~i~~ADvvl-~~D~s~----dd~~~~l~~-~~~~kP~IlV~N 94 (188)
.++++|++.|+-... ..++ ..+++.+..+.. ..+|+++ ++|++. .|....+.. ....+|+|+|+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~---~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlN 225 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT---KENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVIT 225 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT---STTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEE
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh---cCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEe
Confidence 456788887762110 1121 334444433333 7899998 788763 232222222 234689999999
Q ss_pred cCCCCChHH-HHHH-h--------cCCCEEEEeccccccHHHHHHHHHHh
Q psy7063 95 KIDQISIEE-VDRI-A--------RQPNSVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 95 KiDl~~~e~-l~~l-~--------~~~~~vpISA~~~~gld~L~~~I~~~ 134 (188)
|+|+.+... ...+ . .+..++++||++|.|+++|.++|.+.
T Consensus 226 KiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 226 KLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp CTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred CcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 999985432 1111 1 12247889999999999999999873
No 141
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.86 E-value=6.1e-06 Score=68.52 Aligned_cols=75 Identities=21% Similarity=0.215 Sum_probs=53.1
Q ss_pred cceeeEEE-EecCCchH----HHHHHHhcCCCCcEEEEEecCCCCChH----HHHHHh-c-CCCEEEEeccccccHHHHH
Q psy7063 60 LTLKNVLF-REDCNADE----LIDVINANRVYLPCIYAYNKIDQISIE----EVDRIA-R-QPNSVVVSCNMKLNLDYLL 128 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~~l~~~~~~kP~IlV~NKiDl~~~e----~l~~l~-~-~~~~vpISA~~~~gld~L~ 128 (188)
...+|+++ ++|++..+ +..++.. ..+|+++|+||+|+.... ..+.+. . ..+++++||++|.|+++|.
T Consensus 83 ~~~~d~ii~VvD~~~~~~~~~~~~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~ 160 (274)
T 3i8s_A 83 SGDADLLINVVDASNLERNLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALK 160 (274)
T ss_dssp HTCCSEEEEEEEGGGHHHHHHHHHHHHH--HTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHH
T ss_pred hcCCCEEEEEecCCChHHHHHHHHHHHh--cCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 47899998 88987432 1222222 368999999999986432 123332 1 1359999999999999999
Q ss_pred HHHHHhcc
Q psy7063 129 DIIWLYLS 136 (188)
Q Consensus 129 ~~I~~~L~ 136 (188)
+.|.+.+.
T Consensus 161 ~~i~~~~~ 168 (274)
T 3i8s_A 161 LAIDRYKA 168 (274)
T ss_dssp HHHHTCCC
T ss_pred HHHHHHHh
Confidence 99988765
No 142
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.86 E-value=1.5e-05 Score=65.67 Aligned_cols=74 Identities=16% Similarity=0.091 Sum_probs=51.9
Q ss_pred ceeeEEE-EecCCc-hHH---HHHHHhcCCCCcEEEEEecCCCCChH----HHHHHh-c-CCCEEEEeccccccHHHHHH
Q psy7063 61 TLKNVLF-REDCNA-DEL---IDVINANRVYLPCIYAYNKIDQISIE----EVDRIA-R-QPNSVVVSCNMKLNLDYLLD 129 (188)
Q Consensus 61 ~~ADvvl-~~D~s~-dd~---~~~l~~~~~~kP~IlV~NKiDl~~~e----~l~~l~-~-~~~~vpISA~~~~gld~L~~ 129 (188)
..+|+++ ++|++. +.. ..++ ....+|+++|+||+|+.... +...+. . ..+++++||++|.|+++|.+
T Consensus 82 ~~~d~ii~V~D~t~~~~~~~~~~~l--~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~ 159 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSLYLLLEI--LEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKE 159 (258)
T ss_dssp SCCSEEEEEEETTSCHHHHHHHHHH--HTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHH
T ss_pred cCCCEEEEEeCCCchhhHHHHHHHH--HhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHH
Confidence 5899998 889874 222 2222 23479999999999975321 122232 1 13589999999999999999
Q ss_pred HHHHhcc
Q psy7063 130 IIWLYLS 136 (188)
Q Consensus 130 ~I~~~L~ 136 (188)
.|.+.+.
T Consensus 160 ~i~~~~~ 166 (258)
T 3a1s_A 160 KIVEYAQ 166 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9988754
No 143
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.06 E-value=2.2e-06 Score=66.80 Aligned_cols=77 Identities=12% Similarity=0.010 Sum_probs=49.1
Q ss_pred cccceeeEEE-EecCCchH----HH----HHHHhcCCCCcEEEEEecCCCCChH------------HH-----HHHh---
Q psy7063 58 SKLTLKNVLF-REDCNADE----LI----DVINANRVYLPCIYAYNKIDQISIE------------EV-----DRIA--- 108 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd----~~----~~l~~~~~~kP~IlV~NKiDl~~~e------------~l-----~~l~--- 108 (188)
..+.+||+++ ++|++..+ .. ..+......+|+++|+||+|+.+.. .+ ..+.
T Consensus 97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 176 (204)
T 3th5_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 176 (204)
Confidence 3467899987 78876432 11 1111111268999999999987432 11 1111
Q ss_pred cCCCEEEEeccccccHHHHHHHHHHh
Q psy7063 109 RQPNSVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 109 ~~~~~vpISA~~~~gld~L~~~I~~~ 134 (188)
....++++||++|.|+++|.+.|.+.
T Consensus 177 ~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 177 GAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 11147889999999999999888764
No 144
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.84 E-value=1.3e-05 Score=71.25 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=54.2
Q ss_pred cceeeEEE-EecCCchH----HHHHHHhcCCCCcEEEEEecCCCCChHH---HHHHhc-C-CCEEEEeccccccHHHHHH
Q psy7063 60 LTLKNVLF-REDCNADE----LIDVINANRVYLPCIYAYNKIDQISIEE---VDRIAR-Q-PNSVVVSCNMKLNLDYLLD 129 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~~l~~~~~~kP~IlV~NKiDl~~~e~---l~~l~~-~-~~~vpISA~~~~gld~L~~ 129 (188)
+..||+++ ++|++..+ +...+.. ..+|+++|+||+|+.+... .+.+.. + ..++++||++|.|+++|.+
T Consensus 111 l~~aD~vllVvD~~~~~~~~~~l~~l~~--~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~ 188 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPYEDDVVNLFKE--MEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGK 188 (423)
T ss_dssp HTSCSEEEEECSSSCCHHHHHHHHHHHH--TTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHH
T ss_pred HhcCCEEEEEEeCCChHHHHHHHHHHHh--cCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence 67899997 78885322 2222322 3789999999999975432 233321 1 3578999999999999999
Q ss_pred HHHHhccc
Q psy7063 130 IIWLYLSL 137 (188)
Q Consensus 130 ~I~~~L~~ 137 (188)
.|.+.+..
T Consensus 189 ~L~~~l~~ 196 (423)
T 3qq5_A 189 TISEILPG 196 (423)
T ss_dssp HHHHHSCC
T ss_pred HHHHhhhh
Confidence 99998853
No 145
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.84 E-value=3.7e-05 Score=60.04 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=46.8
Q ss_pred cceeeEEE-EecCCc-hH-HH---HHHHh-------cCCCCcEEEEEecCCCCChHH---H-HHH----h----------
Q psy7063 60 LTLKNVLF-REDCNA-DE-LI---DVINA-------NRVYLPCIYAYNKIDQISIEE---V-DRI----A---------- 108 (188)
Q Consensus 60 i~~ADvvl-~~D~s~-dd-~~---~~l~~-------~~~~kP~IlV~NKiDl~~~e~---l-~~l----~---------- 108 (188)
+.+||+++ ++|++. +. .. +.+.. .....|+++|+||+|+..... + +.+ .
T Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 155 (214)
T 2fh5_B 76 KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAP 155 (214)
T ss_dssp GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---
T ss_pred HhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcc
Confidence 67899997 889874 11 11 11111 123689999999999874321 1 100 0
Q ss_pred ---------c-----------------CCCEEEEecccc------ccHHHHHHHHHHh
Q psy7063 109 ---------R-----------------QPNSVVVSCNMK------LNLDYLLDIIWLY 134 (188)
Q Consensus 109 ---------~-----------------~~~~vpISA~~~------~gld~L~~~I~~~ 134 (188)
+ ...++++||++| .|+++|.+.|.+.
T Consensus 156 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 156 STLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0 113688999999 9999999988765
No 146
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.83 E-value=1.2e-05 Score=67.07 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=51.3
Q ss_pred ceeeEEE-EecCCchH----HHHHHHhcCCCCcEEEEEecCCCCChH----HHHHHhc--CCCEEEEeccccccHHHHHH
Q psy7063 61 TLKNVLF-REDCNADE----LIDVINANRVYLPCIYAYNKIDQISIE----EVDRIAR--QPNSVVVSCNMKLNLDYLLD 129 (188)
Q Consensus 61 ~~ADvvl-~~D~s~dd----~~~~l~~~~~~kP~IlV~NKiDl~~~e----~l~~l~~--~~~~vpISA~~~~gld~L~~ 129 (188)
.++|+++ ++|++..+ +..++.. ..+|+++|+||+|+.... +...+.. ..+++++||++|.|+++|.+
T Consensus 79 ~~~d~vi~V~D~t~~e~~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~ 156 (272)
T 3b1v_A 79 QRADSILNVVDATNLERNLYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVK 156 (272)
T ss_dssp TCCSEEEEEEEGGGHHHHHHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHH
T ss_pred CCCCEEEEEecCCchHhHHHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHH
Confidence 4799998 88987432 1122222 468999999999975321 1222321 13589999999999999999
Q ss_pred HHHHhcc
Q psy7063 130 IIWLYLS 136 (188)
Q Consensus 130 ~I~~~L~ 136 (188)
.|.+.+.
T Consensus 157 ~i~~~~~ 163 (272)
T 3b1v_A 157 KAAHTTT 163 (272)
T ss_dssp HHHHSCT
T ss_pred HHHHHHh
Confidence 9988753
No 147
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.83 E-value=1.8e-05 Score=69.89 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=52.3
Q ss_pred cccceeeEEE-EecCCc----hH--HHHHHHhcCCCCcEEEEEecCCCCChH-----HH-HHHh------cCCCEEEEec
Q psy7063 58 SKLTLKNVLF-REDCNA----DE--LIDVINANRVYLPCIYAYNKIDQISIE-----EV-DRIA------RQPNSVVVSC 118 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~----dd--~~~~l~~~~~~kP~IlV~NKiDl~~~e-----~l-~~l~------~~~~~vpISA 118 (188)
..+..||+++ ++|++. .+ +...+. ...+|+++|+||+|+.+.. ++ +.+. ...+++++||
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~--~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA 330 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAH--EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSA 330 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHH--HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCT
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHHHHHHHHH--HcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEec
Confidence 3578899997 788763 12 112222 2469999999999987432 11 1111 1246899999
Q ss_pred cccccHHHHHHHHHHhcc
Q psy7063 119 NMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 119 ~~~~gld~L~~~I~~~L~ 136 (188)
++|.|+++|.+.+.+.+.
T Consensus 331 ~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 331 LTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp TTCTTGGGHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 999999999888876654
No 148
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.83 E-value=4.6e-06 Score=71.55 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=47.0
Q ss_pred ceeeEEE-EecCCchHHHHHHHhcCCCCcEEEEEecCCCCChHHH----HHHh------c------CCCEEEEecccccc
Q psy7063 61 TLKNVLF-REDCNADELIDVINANRVYLPCIYAYNKIDQISIEEV----DRIA------R------QPNSVVVSCNMKLN 123 (188)
Q Consensus 61 ~~ADvvl-~~D~s~dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~l----~~l~------~------~~~~vpISA~~~~g 123 (188)
..||+++ ++|++..+....+......+|.++|+||+|+.+...+ ..+. . .+.++++||++|.|
T Consensus 168 ~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~g 247 (341)
T 2p67_A 168 RMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRG 247 (341)
T ss_dssp TTCSEEEEEECC------CCCCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBS
T ss_pred HhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCC
Confidence 5677776 6776533211111000014689999999999864322 1221 1 24578999999999
Q ss_pred HHHHHHHHHHhcc
Q psy7063 124 LDYLLDIIWLYLS 136 (188)
Q Consensus 124 ld~L~~~I~~~L~ 136 (188)
+++|.+.|.+.+.
T Consensus 248 i~~L~~~l~~~~~ 260 (341)
T 2p67_A 248 IDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 149
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.83 E-value=2.5e-05 Score=60.17 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=50.5
Q ss_pred cceeeEEE-EecCCchH-H---H---HHHHhc----CCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEec-c
Q psy7063 60 LTLKNVLF-REDCNADE-L---I---DVINAN----RVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSC-N 119 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd-~---~---~~l~~~----~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA-~ 119 (188)
+.+||+++ +.|++..+ + . ..+... ....|+++|+||+|+... ++...+. . ...++.+|| +
T Consensus 89 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~ 168 (187)
T 3c5c_A 89 LNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACL 168 (187)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSS
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecC
Confidence 46788887 78887432 1 1 112111 147899999999998532 2233332 1 125889999 8
Q ss_pred ccccHHHHHHHHHHhc
Q psy7063 120 MKLNLDYLLDIIWLYL 135 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L 135 (188)
+|.|+++|.+.|.+.+
T Consensus 169 ~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 169 DFEHVQHVFHEAVREA 184 (187)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999988764
No 150
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.81 E-value=6.8e-05 Score=56.86 Aligned_cols=52 Identities=27% Similarity=0.391 Sum_probs=39.2
Q ss_pred CCCcEEEEEecCCCCCh--HHHHHHh---cCC------CEEEEeccccccHHHHHHHHHHhcc
Q psy7063 85 VYLPCIYAYNKIDQISI--EEVDRIA---RQP------NSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~~~--e~l~~l~---~~~------~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
...|+++|+||+|+... +..+.+. ..+ .++++||++|.|+++|.+.|.+.+.
T Consensus 121 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 121 LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 46899999999999753 2333332 221 3699999999999999999988764
No 151
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.81 E-value=1.9e-05 Score=68.04 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=48.5
Q ss_pred ceeeEEE-EecCCchHHHHHHHhcCCCCcEEEEEecCCCCChHH----HHHHh-------c-----CCCEEEEecccccc
Q psy7063 61 TLKNVLF-REDCNADELIDVINANRVYLPCIYAYNKIDQISIEE----VDRIA-------R-----QPNSVVVSCNMKLN 123 (188)
Q Consensus 61 ~~ADvvl-~~D~s~dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~----l~~l~-------~-----~~~~vpISA~~~~g 123 (188)
..+|+++ ++|++..+....+.......|.++|+||+|+.+.+. ...+. . .++++++||++|.|
T Consensus 186 ~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~G 265 (349)
T 2www_A 186 DMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEG 265 (349)
T ss_dssp TTCSEEEEEECCC------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTT
T ss_pred hhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCC
Confidence 5788887 788764322221211123578999999999875332 12221 1 24578999999999
Q ss_pred HHHHHHHHHHhccc
Q psy7063 124 LDYLLDIIWLYLSL 137 (188)
Q Consensus 124 ld~L~~~I~~~L~~ 137 (188)
+++|.+.|.+.+..
T Consensus 266 i~~L~~~I~~~~~~ 279 (349)
T 2www_A 266 ISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988753
No 152
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.80 E-value=6.2e-06 Score=73.88 Aligned_cols=68 Identities=15% Similarity=0.098 Sum_probs=42.1
Q ss_pred ccceeeEEE-EecCCch----------HHHHHHH--hcCCCCcEEEEEecCCCCC--hHHH-------HHHh---c----
Q psy7063 59 KLTLKNVLF-REDCNAD----------ELIDVIN--ANRVYLPCIYAYNKIDQIS--IEEV-------DRIA---R---- 109 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d----------d~~~~l~--~~~~~kP~IlV~NKiDl~~--~e~l-------~~l~---~---- 109 (188)
++..||++| ++|++.. ...+.+. ....-+|+|+|+||+|+.+ .+.. ..+. .
T Consensus 131 ~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~ 210 (483)
T 3p26_A 131 GISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFED 210 (483)
T ss_dssp HHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred hhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcc
Confidence 478899997 8898753 1112211 1122367999999999975 2211 1111 1
Q ss_pred CCCEEEEeccccccHHH
Q psy7063 110 QPNSVVVSCNMKLNLDY 126 (188)
Q Consensus 110 ~~~~vpISA~~~~gld~ 126 (188)
...++++||++|.|+++
T Consensus 211 ~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 211 NINWVPISGFSGEGVYK 227 (483)
T ss_dssp GEEEEECCSSSCTTSSS
T ss_pred cceEEEEeeecCCCccc
Confidence 12479999999999974
No 153
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.74 E-value=0.00012 Score=56.74 Aligned_cols=76 Identities=16% Similarity=0.100 Sum_probs=48.4
Q ss_pred cceeeEEE-EecCCchH-------HHHHHHhc--CCCCcEEEEEecCCCCCh-----HHHHHHh-cC-CCEEEEeccccc
Q psy7063 60 LTLKNVLF-REDCNADE-------LIDVINAN--RVYLPCIYAYNKIDQISI-----EEVDRIA-RQ-PNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd-------~~~~l~~~--~~~kP~IlV~NKiDl~~~-----e~l~~l~-~~-~~~vpISA~~~~ 122 (188)
.+.||..+ +.|++..+ ....+... ....|+++|+||+|+... ++...+. .+ ..++++||++|.
T Consensus 78 ~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQH 157 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCC
Confidence 34567765 67776422 11222221 236899999999998632 1111221 22 247889999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|+++|.+.|.+.+
T Consensus 158 ~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 158 NVKELFEGIVRQV 170 (192)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999988765
No 154
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.73 E-value=2.2e-05 Score=71.01 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=49.2
Q ss_pred cceeeEEE-EecCCch-H---HHHHHHhcCCCCcEEEEEecCCCCChH-----HHHHHh-cC-CCEEEEeccccccHHHH
Q psy7063 60 LTLKNVLF-REDCNAD-E---LIDVINANRVYLPCIYAYNKIDQISIE-----EVDRIA-RQ-PNSVVVSCNMKLNLDYL 127 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d-d---~~~~l~~~~~~kP~IlV~NKiDl~~~e-----~l~~l~-~~-~~~vpISA~~~~gld~L 127 (188)
+.++|+++ ++|++.. + ....+......+|+|+|+||+|+.... .+..+. .. ..++++||++|.|+++|
T Consensus 119 l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL 198 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESI 198 (535)
T ss_dssp HHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTH
T ss_pred ccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHH
Confidence 55789997 8898743 2 223333323468999999999987432 222222 11 24899999999999999
Q ss_pred HHHHHHhccc
Q psy7063 128 LDIIWLYLSL 137 (188)
Q Consensus 128 ~~~I~~~L~~ 137 (188)
.+.|.+.+..
T Consensus 199 ~~~l~~~~~~ 208 (535)
T 3dpu_A 199 AKSLKSAVLH 208 (535)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 9999988754
No 155
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.71 E-value=4.9e-05 Score=70.15 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=52.8
Q ss_pred cccceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEEEEEecCCCCCh-----------------HH----H-------
Q psy7063 58 SKLTLKNVLF-REDCNA---DELIDVINA-NRVYLPCIYAYNKIDQISI-----------------EE----V------- 104 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~IlV~NKiDl~~~-----------------e~----l------- 104 (188)
.++..||+++ ++|++. .+-.+.+.. .....|+++|+||+|+... ++ +
T Consensus 89 r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei 168 (594)
T 1g7s_A 89 RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYEL 168 (594)
T ss_dssp SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHH
Confidence 3578899997 889875 332222211 2246899999999998631 00 0
Q ss_pred -HHHhc--C--------------CCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 105 -DRIAR--Q--------------PNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 105 -~~l~~--~--------------~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
+.+.. + .+++|+||++|.|+++|++.|...++
T Consensus 169 ~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 169 VGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 11110 1 14789999999999999999987764
No 156
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.70 E-value=6.5e-05 Score=57.57 Aligned_cols=77 Identities=16% Similarity=0.112 Sum_probs=50.4
Q ss_pred cceeeEEE-EecCCch-H-H---HHH---HHhcCCCCcEEEEEecCCCCChHHH--------HHHh-c--CC---CEEEE
Q psy7063 60 LTLKNVLF-REDCNAD-E-L---IDV---INANRVYLPCIYAYNKIDQISIEEV--------DRIA-R--QP---NSVVV 116 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d-d-~---~~~---l~~~~~~kP~IlV~NKiDl~~~e~l--------~~l~-~--~~---~~vpI 116 (188)
+.++|+++ +.|++.. . + ... +.......|+++|+||+|+.+...+ ..+. . ++ +.+++
T Consensus 77 ~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
T 2zej_A 77 MTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFV 156 (184)
T ss_dssp HHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEEC
T ss_pred ccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEE
Confidence 56788886 7887642 1 1 111 1112236899999999999764332 1221 1 12 27889
Q ss_pred eccccc-cHHHHHHHHHHhcc
Q psy7063 117 SCNMKL-NLDYLLDIIWLYLS 136 (188)
Q Consensus 117 SA~~~~-gld~L~~~I~~~L~ 136 (188)
||+++. |+++|.+.|.+.+.
T Consensus 157 Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 157 NATEESDALAKLRKTIINESL 177 (184)
T ss_dssp CTTSCCHHHHHHHHHHHHHHH
T ss_pred ecccCchhHHHHHHHHHHHHh
Confidence 999996 99999999988764
No 157
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.70 E-value=4.6e-05 Score=70.51 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=53.0
Q ss_pred cceeeEEE-EecCCch---HHHHHH-HhcCCCCcEEEEEecCCCCCh--HH-HHHHh---cC--CCEEEEeccccccHHH
Q psy7063 60 LTLKNVLF-REDCNAD---ELIDVI-NANRVYLPCIYAYNKIDQISI--EE-VDRIA---RQ--PNSVVVSCNMKLNLDY 126 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d---d~~~~l-~~~~~~kP~IlV~NKiDl~~~--e~-l~~l~---~~--~~~vpISA~~~~gld~ 126 (188)
+..||..+ ++|++.. +-...+ .......|+|+|+||+|+... +. .+.+. .+ .+++++||++|.|+++
T Consensus 94 l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~ 173 (600)
T 2ywe_A 94 LAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEE 173 (600)
T ss_dssp HHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTBSHHH
T ss_pred HHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCCCchH
Confidence 57788887 8888632 111111 112346899999999999743 22 23332 22 1489999999999999
Q ss_pred HHHHHHHhcc
Q psy7063 127 LLDIIWLYLS 136 (188)
Q Consensus 127 L~~~I~~~L~ 136 (188)
|++.|.+.++
T Consensus 174 Lle~I~~~lp 183 (600)
T 2ywe_A 174 ILEAIVNRIP 183 (600)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHhcc
Confidence 9999998875
No 158
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.67 E-value=8.5e-05 Score=57.47 Aligned_cols=75 Identities=15% Similarity=0.063 Sum_probs=49.6
Q ss_pred cceeeEEE-EecCCch---HHH---HHHHh---cCCCCcEEEEEecCCCCChHH-------H-----HHHhc-----C-C
Q psy7063 60 LTLKNVLF-REDCNAD---ELI---DVINA---NRVYLPCIYAYNKIDQISIEE-------V-----DRIAR-----Q-P 111 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d---d~~---~~l~~---~~~~kP~IlV~NKiDl~~~e~-------l-----~~l~~-----~-~ 111 (188)
+.+||+++ ++|++.. .+. ..+.. .....|+++|+||+|+.+.+. + ..+.. . .
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 56799997 8888752 211 22221 234789999999999876321 1 11111 1 1
Q ss_pred CEEEEeccccccHHHHHHHHHHhc
Q psy7063 112 NSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 112 ~~vpISA~~~~gld~L~~~I~~~L 135 (188)
.++++||++ .|++++.+.|.+.+
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 478899999 99999999887754
No 159
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.65 E-value=0.0001 Score=67.00 Aligned_cols=26 Identities=15% Similarity=-0.061 Sum_probs=23.0
Q ss_pred EEEEeccccccHHHHHHHHHHhcccc
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLI 138 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~i 138 (188)
++++||.+|.|+++|++.|.++++--
T Consensus 253 V~~gSA~~~~GV~~Lld~i~~~~p~p 278 (528)
T 3tr5_A 253 IFFGSAINNFGVGELLDAFVKEAPPP 278 (528)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHSCCC
T ss_pred EEeccccCCccHHHHHHHHHHhCCCC
Confidence 56789999999999999999998744
No 160
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.61 E-value=0.00013 Score=55.49 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=51.0
Q ss_pred ceeeEEE-EecCCch-HHHHHHHh-cCCCCcEEEEEecCCCCChH----HHHHHh-c-CCCEEEEeccccccHHHHHHHH
Q psy7063 61 TLKNVLF-REDCNAD-ELIDVINA-NRVYLPCIYAYNKIDQISIE----EVDRIA-R-QPNSVVVSCNMKLNLDYLLDII 131 (188)
Q Consensus 61 ~~ADvvl-~~D~s~d-d~~~~l~~-~~~~kP~IlV~NKiDl~~~e----~l~~l~-~-~~~~vpISA~~~~gld~L~~~I 131 (188)
..+|+++ +.|.+.- .....+.. .....|+++|+||+|+.... ....+. . ...++++||+++.|+++|.+.|
T Consensus 84 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 163 (188)
T 2wjg_A 84 EKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAI 163 (188)
T ss_dssp HCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHH
T ss_pred cCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHH
Confidence 4588887 7887642 22222111 22468999999999975321 223332 1 1358999999999999999999
Q ss_pred HHhcc
Q psy7063 132 WLYLS 136 (188)
Q Consensus 132 ~~~L~ 136 (188)
.+.+.
T Consensus 164 ~~~~~ 168 (188)
T 2wjg_A 164 SIAVK 168 (188)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88775
No 161
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.61 E-value=0.00011 Score=64.87 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=51.1
Q ss_pred ccceeeEEE-EecCCc----hH--HHHHHHhcCCCCcEEEEEecCCCCChHH-----HH-HH----h--cCCCEEEEecc
Q psy7063 59 KLTLKNVLF-REDCNA----DE--LIDVINANRVYLPCIYAYNKIDQISIEE-----VD-RI----A--RQPNSVVVSCN 119 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~----dd--~~~~l~~~~~~kP~IlV~NKiDl~~~e~-----l~-~l----~--~~~~~vpISA~ 119 (188)
.+..||+++ +.|++. .+ +.+.+. ...+|+++|+||+|+.+... +. .+ . .+.+++++||+
T Consensus 260 ~i~~ad~vllv~d~~~~~~~~~~~i~~~l~--~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 337 (439)
T 1mky_A 260 SIEKADVVVIVLDATQGITRQDQRMAGLME--RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSAD 337 (439)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHH--HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTT
T ss_pred HHhhCCEEEEEEeCCCCCCHHHHHHHHHHH--HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECC
Confidence 356789887 778652 12 122222 24699999999999875321 11 11 1 23468999999
Q ss_pred ccccHHHHHHHHHHhcc
Q psy7063 120 MKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~ 136 (188)
+|.|+++|.+.|.+.+.
T Consensus 338 ~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 338 KGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998877553
No 162
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.60 E-value=2.9e-05 Score=70.98 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=54.0
Q ss_pred cccceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEEEEEecCCCCCh--H----HHHHHh----cC---CCEEEEecc
Q psy7063 58 SKLTLKNVLF-REDCNA---DELIDVINA-NRVYLPCIYAYNKIDQISI--E----EVDRIA----RQ---PNSVVVSCN 119 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~IlV~NKiDl~~~--e----~l~~l~----~~---~~~vpISA~ 119 (188)
..+..||+++ ++|++. ++..+.+.. ....+|+|+|+||+|+.+. + ++..+. .+ ..++++||+
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence 4578899997 788763 222222221 2356899999999998642 1 122211 11 147889999
Q ss_pred ccccHHHHHHHHHHhccc
Q psy7063 120 MKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~~ 137 (188)
+|.|+++|.+.|...+..
T Consensus 151 tG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 151 TGENMMALAEATIALAEM 168 (537)
T ss_dssp SSCSSHHHHHHHHHHHTT
T ss_pred CCCCchhHHHHHHHhhhc
Confidence 999999999999988764
No 163
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.59 E-value=0.00017 Score=58.10 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=38.6
Q ss_pred CCcEEEEEecCCCCChHHH---HH-----------------------------Hh---cCCCEEEEeccccccHHHHHHH
Q psy7063 86 YLPCIYAYNKIDQISIEEV---DR-----------------------------IA---RQPNSVVVSCNMKLNLDYLLDI 130 (188)
Q Consensus 86 ~kP~IlV~NKiDl~~~e~l---~~-----------------------------l~---~~~~~vpISA~~~~gld~L~~~ 130 (188)
.+|.++|+||+|+.+..++ .. +. ....++++||+++.|+++|.+.
T Consensus 171 ~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 250 (262)
T 1yrb_A 171 GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETL 250 (262)
T ss_dssp TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHH
T ss_pred CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHH
Confidence 5899999999998754321 11 01 1125899999999999999999
Q ss_pred HHHhcc
Q psy7063 131 IWLYLS 136 (188)
Q Consensus 131 I~~~L~ 136 (188)
|.+.+.
T Consensus 251 i~~~~~ 256 (262)
T 1yrb_A 251 AYEHYC 256 (262)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998775
No 164
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.56 E-value=0.00013 Score=64.70 Aligned_cols=82 Identities=23% Similarity=0.238 Sum_probs=56.7
Q ss_pred cceeeEEE-EecCCchHHHH-------HHHhc---CCCCcEEEEEecCCCCChHHHHHHh----cC-CCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADELID-------VINAN---RVYLPCIYAYNKIDQISIEEVDRIA----RQ-PNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd~~~-------~l~~~---~~~kP~IlV~NKiDl~~~e~l~~l~----~~-~~~vpISA~~~~g 123 (188)
+..++.++ ++|++ .+... ++... ...+|.++|+||+|+...+.+..+. .. ..++++||+++.|
T Consensus 233 ~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 233 IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAG 311 (416)
T ss_dssp HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccC
Confidence 45688887 88886 22111 11111 1258999999999998653333221 21 2589999999999
Q ss_pred HHHHHHHHHHhcccceeee
Q psy7063 124 LDYLLDIIWLYLSLIRVYT 142 (188)
Q Consensus 124 ld~L~~~I~~~L~~irVY~ 142 (188)
+++|.+.|++.+...+.++
T Consensus 312 i~eL~~~i~~~l~~~~~~~ 330 (416)
T 1udx_A 312 LPALKEALHALVRSTPPPE 330 (416)
T ss_dssp HHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 9999999999998766554
No 165
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.54 E-value=2e-05 Score=62.07 Aligned_cols=51 Identities=10% Similarity=0.132 Sum_probs=37.9
Q ss_pred CCcEEEEEecCCCCCh-----HHH-HHHh---cCCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 86 YLPCIYAYNKIDQISI-----EEV-DRIA---RQPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 86 ~kP~IlV~NKiDl~~~-----e~l-~~l~---~~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
.+|.++|+||+|+.+. +++ ..+. ....++++||++|.|+++|.+.|.+.+.
T Consensus 154 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 154 RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 4799999999998532 222 1121 1235899999999999999999988764
No 166
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.53 E-value=8e-05 Score=61.42 Aligned_cols=81 Identities=15% Similarity=-0.003 Sum_probs=41.8
Q ss_pred eeeEEE-Eec-CC---chHHHHHHHhcCCCCcEEEEEecCCCCChHHHHH----Hh----c-CCCEEEEeccccccHHHH
Q psy7063 62 LKNVLF-RED-CN---ADELIDVINANRVYLPCIYAYNKIDQISIEEVDR----IA----R-QPNSVVVSCNMKLNLDYL 127 (188)
Q Consensus 62 ~ADvvl-~~D-~s---~dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~~----l~----~-~~~~vpISA~~~~gld~L 127 (188)
.+|+++ +++ .+ .+.....+......+|+|+|+||+|+.+.+++.. +. . ...++++||.++.|+++|
T Consensus 115 r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l 194 (274)
T 3t5d_A 115 RVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKL 194 (274)
T ss_dssp CCCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------
T ss_pred ceeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHH
Confidence 356665 553 32 1222233332233799999999999986654321 11 1 224788999999999999
Q ss_pred HHHHHHhcccceeee
Q psy7063 128 LDIIWLYLSLIRVYT 142 (188)
Q Consensus 128 ~~~I~~~L~~irVY~ 142 (188)
.+.|.+.++.-.|-.
T Consensus 195 ~~~l~~~~p~~vv~s 209 (274)
T 3t5d_A 195 VKKIKDRLPLAVVGS 209 (274)
T ss_dssp CHHHHHTCSEECCCC
T ss_pred HHHHhcCCCcEEEEe
Confidence 999999887655433
No 167
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.52 E-value=0.00014 Score=59.81 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=51.8
Q ss_pred cceeeEEE-EecCCchH-HHHHH-HhcCCC-CcEEEEEecCCCCChH----HHHHHh-c-CCCEEEEeccccccHHHHHH
Q psy7063 60 LTLKNVLF-REDCNADE-LIDVI-NANRVY-LPCIYAYNKIDQISIE----EVDRIA-R-QPNSVVVSCNMKLNLDYLLD 129 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd-~~~~l-~~~~~~-kP~IlV~NKiDl~~~e----~l~~l~-~-~~~~vpISA~~~~gld~L~~ 129 (188)
..++|+++ ++|++..+ ..... ...... +|+++|+||+|+.... ....+. . ..+++|+||++|.|+++|.+
T Consensus 79 ~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~ 158 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKR 158 (271)
T ss_dssp TTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHH
T ss_pred ccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHH
Confidence 47899998 88987432 11111 111234 9999999999975322 122232 1 13589999999999999999
Q ss_pred HHHHhcc
Q psy7063 130 IIWLYLS 136 (188)
Q Consensus 130 ~I~~~L~ 136 (188)
.|.+.+.
T Consensus 159 ~i~~~~~ 165 (271)
T 3k53_A 159 MIALMAE 165 (271)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 168
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.52 E-value=0.00014 Score=64.67 Aligned_cols=70 Identities=14% Similarity=-0.032 Sum_probs=44.1
Q ss_pred cccceeeEEE-EecCCchH----------HHHHHH-hcCCCCc-EEEEEecCCCCC--hHHH-------HHH-h--cC--
Q psy7063 58 SKLTLKNVLF-REDCNADE----------LIDVIN-ANRVYLP-CIYAYNKIDQIS--IEEV-------DRI-A--RQ-- 110 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd----------~~~~l~-~~~~~kP-~IlV~NKiDl~~--~e~l-------~~l-~--~~-- 110 (188)
.++..||+++ ++|++... ..+.+. ......| +|+|+||+|+.+ .+.+ ..+ . .+
T Consensus 104 ~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~ 183 (458)
T 1f60_A 104 TGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNP 183 (458)
T ss_dssp HSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCG
T ss_pred hhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 3578999998 89988432 112211 1123455 899999999973 3221 111 1 22
Q ss_pred --CCEEEEeccccccHHHH
Q psy7063 111 --PNSVVVSCNMKLNLDYL 127 (188)
Q Consensus 111 --~~~vpISA~~~~gld~L 127 (188)
.+++|+||++|.|++++
T Consensus 184 ~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 184 KTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGCCEEECCTTTCBTTTBC
T ss_pred cCceEEEeecccCcCcccc
Confidence 36999999999998744
No 169
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.51 E-value=0.00025 Score=61.63 Aligned_cols=77 Identities=9% Similarity=0.003 Sum_probs=50.6
Q ss_pred ccceeeEEE-EecCCc---hHHHHHHH-hcCCCCcE-EEEEe-cCCCCChHHH----HHHh----c----CCCEEE--Ee
Q psy7063 59 KLTLKNVLF-REDCNA---DELIDVIN-ANRVYLPC-IYAYN-KIDQISIEEV----DRIA----R----QPNSVV--VS 117 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~---dd~~~~l~-~~~~~kP~-IlV~N-KiDl~~~e~l----~~l~----~----~~~~vp--IS 117 (188)
++..||+++ ++| +. ++..+.+. ......|. |+|+| |+|+ +.+.+ +++. . ..++++ +|
T Consensus 80 ~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~S 157 (370)
T 2elf_A 80 ALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTN 157 (370)
T ss_dssp HHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred HHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 368899997 788 52 12222221 11235787 99999 9999 64322 1221 1 125899 99
Q ss_pred ccc---cccHHHHHHHHHHhccc
Q psy7063 118 CNM---KLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 118 A~~---~~gld~L~~~I~~~L~~ 137 (188)
|++ +.|+++|.+.|.+.++.
T Consensus 158 A~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 158 KSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTSSSTTTTHHHHHHHHHHHHHH
T ss_pred cccCcCCCCHHHHHHHHHhhccc
Confidence 999 99999999998877653
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.50 E-value=9.7e-05 Score=60.76 Aligned_cols=76 Identities=12% Similarity=0.026 Sum_probs=47.0
Q ss_pred cceee-EEE-EecCCc----hHHHHHHHh-cCCCCcEEEEEecCCCCChHH--HHHHhc--------CCCEEEEeccccc
Q psy7063 60 LTLKN-VLF-REDCNA----DELIDVINA-NRVYLPCIYAYNKIDQISIEE--VDRIAR--------QPNSVVVSCNMKL 122 (188)
Q Consensus 60 i~~AD-vvl-~~D~s~----dd~~~~l~~-~~~~kP~IlV~NKiDl~~~e~--l~~l~~--------~~~~vpISA~~~~ 122 (188)
+..++ +++ ++|++. .+....+.. ....+|+++|+||+|+.+... .+.+.. +..++++||++|.
T Consensus 159 ~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~ 238 (299)
T 2aka_B 159 VTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDID 238 (299)
T ss_dssp HTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTT
T ss_pred HcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhcc
Confidence 33444 554 677752 222222222 224689999999999875422 222221 1135779999999
Q ss_pred cHHHHHHHHHHhc
Q psy7063 123 NLDYLLDIIWLYL 135 (188)
Q Consensus 123 gld~L~~~I~~~L 135 (188)
|+++|.+.|.+..
T Consensus 239 gi~~l~~~l~~~~ 251 (299)
T 2aka_B 239 GKKDITAALAAER 251 (299)
T ss_dssp SCBCHHHHHHHHH
T ss_pred ccccHHHHHHHHH
Confidence 9999999988743
No 171
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.48 E-value=0.00018 Score=62.79 Aligned_cols=78 Identities=18% Similarity=0.131 Sum_probs=51.0
Q ss_pred ccceeeEEE-EecCCch---HHHHHHHh-cCCCCc-EEEEEecCCCCC-hHHH-------HHH-h--cC----CCEEEEe
Q psy7063 59 KLTLKNVLF-REDCNAD---ELIDVINA-NRVYLP-CIYAYNKIDQIS-IEEV-------DRI-A--RQ----PNSVVVS 117 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d---d~~~~l~~-~~~~kP-~IlV~NKiDl~~-~e~l-------~~l-~--~~----~~~vpIS 117 (188)
++..||+++ ++|++.. ...+.+.. .....| +++|+||+|+.+ .+.+ ..+ . .+ .+++++|
T Consensus 95 ~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~S 174 (405)
T 2c78_A 95 GAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGS 174 (405)
T ss_dssp HHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECC
T ss_pred HHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEcc
Confidence 367899997 7887632 22222211 124578 789999999984 3211 111 1 12 3589999
Q ss_pred cccccc------------------HHHHHHHHHHhcc
Q psy7063 118 CNMKLN------------------LDYLLDIIWLYLS 136 (188)
Q Consensus 118 A~~~~g------------------ld~L~~~I~~~L~ 136 (188)
|++|.| +++|++.|.+.++
T Consensus 175 A~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 175 ALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 999987 7889998888765
No 172
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.38 E-value=0.00075 Score=59.40 Aligned_cols=67 Identities=12% Similarity=-0.066 Sum_probs=42.1
Q ss_pred ccceeeEEE-EecCCc---hHHHH---HHHhcCCCCcEEEEEecCCCCC--hHHH-------HHH-hcC------CCEEE
Q psy7063 59 KLTLKNVLF-REDCNA---DELID---VINANRVYLPCIYAYNKIDQIS--IEEV-------DRI-ARQ------PNSVV 115 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~---dd~~~---~l~~~~~~kP~IlV~NKiDl~~--~e~l-------~~l-~~~------~~~vp 115 (188)
.+..||+++ ++|++. ++..+ .+.. ..-+|+|+|+||+|+.+ .+.+ ..+ ... ..+++
T Consensus 124 ~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~ 202 (434)
T 1zun_B 124 GASTCDLAIILVDARYGVQTQTRRHSYIASL-LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVP 202 (434)
T ss_dssp HHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEE
T ss_pred HHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEE
Confidence 368899997 888863 22222 2221 12246899999999975 2222 111 121 24789
Q ss_pred EeccccccHHH
Q psy7063 116 VSCNMKLNLDY 126 (188)
Q Consensus 116 ISA~~~~gld~ 126 (188)
+||++|.|+++
T Consensus 203 vSA~~g~gi~~ 213 (434)
T 1zun_B 203 MSALKGDNVVN 213 (434)
T ss_dssp CCTTTCTTTSS
T ss_pred EeccCCCCccc
Confidence 99999999987
No 173
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.37 E-value=0.00011 Score=67.76 Aligned_cols=79 Identities=14% Similarity=0.081 Sum_probs=43.8
Q ss_pred cccceeeEEE-EecCCc----------hHHHHHHH-hcCCCCc-EEEEEecCCCCC--hHHH-------HHHh----cCC
Q psy7063 58 SKLTLKNVLF-REDCNA----------DELIDVIN-ANRVYLP-CIYAYNKIDQIS--IEEV-------DRIA----RQP 111 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~----------dd~~~~l~-~~~~~kP-~IlV~NKiDl~~--~e~l-------~~l~----~~~ 111 (188)
.++..||++| ++|++. ....+.+. .....+| +|+|+||+|+.+ .+.+ ..+. .+.
T Consensus 274 ~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~ 353 (592)
T 3mca_A 274 AGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFK 353 (592)
T ss_dssp C-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCC
T ss_pred HHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCC
Confidence 3467788887 777652 12122211 1123455 889999999875 2222 1111 121
Q ss_pred ----CEEEEeccccccHH--------------HHHHHHHHhcc
Q psy7063 112 ----NSVVVSCNMKLNLD--------------YLLDIIWLYLS 136 (188)
Q Consensus 112 ----~~vpISA~~~~gld--------------~L~~~I~~~L~ 136 (188)
.++++||++|.|++ .|++.|...++
T Consensus 354 ~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 354 TSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp GGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred ccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 47999999999998 78888877653
No 174
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.37 E-value=6.1e-05 Score=62.64 Aligned_cols=115 Identities=10% Similarity=0.024 Sum_probs=63.8
Q ss_pred ceeEEEccCCccchh--chhhHHHHHHhhhhhcccceeeEEE-EecC-Cc----hHHHHHHHh-cCCCCcEEEEEecCCC
Q psy7063 28 SKGTFQSYTSSINRH--YYYKSARAYEADTLPSKLTLKNVLF-REDC-NA----DELIDVINA-NRVYLPCIYAYNKIDQ 98 (188)
Q Consensus 28 ~~~~~~~~~~~ln~~--l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~-s~----dd~~~~l~~-~~~~kP~IlV~NKiDl 98 (188)
.++.|++.|+..... -....+.+++.......+.+||+++ ++|. +. .+....+.. ....+|+++|+||+|+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl 210 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDL 210 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTS
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCccc
Confidence 356777766532100 0001222334444445678999775 6664 21 121122221 2346899999999998
Q ss_pred CChHH--HHHHh----cC-CCEEE---Eeccc---cccHHHHHHHHHHhcccceeee
Q psy7063 99 ISIEE--VDRIA----RQ-PNSVV---VSCNM---KLNLDYLLDIIWLYLSLIRVYT 142 (188)
Q Consensus 99 ~~~e~--l~~l~----~~-~~~vp---ISA~~---~~gld~L~~~I~~~L~~irVY~ 142 (188)
..... .+.+. .+ ...++ +||.+ +.|+++|.+.+.+.++....|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~ 267 (315)
T 1jwy_B 211 MDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYK 267 (315)
T ss_dssp SCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGG
T ss_pred CCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCccc
Confidence 75432 33332 11 23455 55555 7889999999999987554454
No 175
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.34 E-value=0.00036 Score=60.78 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=51.3
Q ss_pred ccceeeEEE-EecCCc---hHHHHHHHh-cCCCCc-EEEEEecCCCCC-hHH-------HHHH-h--cC----CCEEEEe
Q psy7063 59 KLTLKNVLF-REDCNA---DELIDVINA-NRVYLP-CIYAYNKIDQIS-IEE-------VDRI-A--RQ----PNSVVVS 117 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP-~IlV~NKiDl~~-~e~-------l~~l-~--~~----~~~vpIS 117 (188)
++..||+++ ++|++. .+..+.+.. .....| +++|+||+|+.+ .+. +..+ . .+ .+++++|
T Consensus 86 ~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~S 165 (397)
T 1d2e_A 86 GTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGS 165 (397)
T ss_dssp TSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECC
T ss_pred hHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEee
Confidence 478999997 888874 222222211 124578 689999999974 321 1112 1 22 2689999
Q ss_pred cccccc----------HHHHHHHHHHhcc
Q psy7063 118 CNMKLN----------LDYLLDIIWLYLS 136 (188)
Q Consensus 118 A~~~~g----------ld~L~~~I~~~L~ 136 (188)
|++|.| +++|++.|.+.++
T Consensus 166 A~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 166 ALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred hhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 999874 8899999988765
No 176
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.31 E-value=0.00015 Score=62.12 Aligned_cols=76 Identities=21% Similarity=0.084 Sum_probs=47.2
Q ss_pred ceeeEEE-EecCCchHHHHHHHhcCCCCcEEEEEecCCCCC-hHH----HHHHh------c------CCCEEEEeccccc
Q psy7063 61 TLKNVLF-REDCNADELIDVINANRVYLPCIYAYNKIDQIS-IEE----VDRIA------R------QPNSVVVSCNMKL 122 (188)
Q Consensus 61 ~~ADvvl-~~D~s~dd~~~~l~~~~~~kP~IlV~NKiDl~~-~e~----l~~l~------~------~~~~vpISA~~~~ 122 (188)
..+|+++ +.|.+..+..+.+.......|.++|+||+|+.. .+. ...+. . +++++++||.++.
T Consensus 167 ~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~ 246 (337)
T 2qm8_A 167 DLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGK 246 (337)
T ss_dssp TTSSEEEEEECSCC------CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTB
T ss_pred hhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCC
Confidence 5788887 677653221111110001357789999999753 221 12221 1 3568999999999
Q ss_pred cHHHHHHHHHHhcc
Q psy7063 123 NLDYLLDIIWLYLS 136 (188)
Q Consensus 123 gld~L~~~I~~~L~ 136 (188)
|+++|.+.|.+.+.
T Consensus 247 gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 247 GLDSLWSRIEDHRS 260 (337)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998765
No 177
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.27 E-value=0.00016 Score=58.63 Aligned_cols=78 Identities=15% Similarity=0.064 Sum_probs=50.3
Q ss_pred ccceeeEEE-EecCCc--hH---HHHHHHhc---CCCCcEEEEEe-cCCCCChH--H---------HHHH-hc-------
Q psy7063 59 KLTLKNVLF-REDCNA--DE---LIDVINAN---RVYLPCIYAYN-KIDQISIE--E---------VDRI-AR------- 109 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~--dd---~~~~l~~~---~~~kP~IlV~N-KiDl~~~e--~---------l~~l-~~------- 109 (188)
.+..+|+++ ++|++. +. +...+... ...+|.++|+| |+|+.... . +..+ ..
T Consensus 102 ~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 181 (260)
T 2xtp_A 102 SAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICA 181 (260)
T ss_dssp HTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEE
T ss_pred cCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCeEEE
Confidence 468899997 788752 11 22223221 11468888888 99987431 1 1112 11
Q ss_pred CCCEEEEeccccccHHHHHHHHHHhccc
Q psy7063 110 QPNSVVVSCNMKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 110 ~~~~vpISA~~~~gld~L~~~I~~~L~~ 137 (188)
+.. +++||+++.|+++|.+.|.+.+..
T Consensus 182 ~~~-~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 182 FNN-RAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp CCT-TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecC-cccccccHHHHHHHHHHHHHHHHh
Confidence 222 789999999999999999998764
No 178
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.20 E-value=0.00014 Score=61.95 Aligned_cols=71 Identities=10% Similarity=0.061 Sum_probs=46.3
Q ss_pred cccceeeEEE-EecCCc----hHHH-HHHH-hcCCCCcEEEEEecCCCCChHH----HHHH---h-c-CCCEEEEecccc
Q psy7063 58 SKLTLKNVLF-REDCNA----DELI-DVIN-ANRVYLPCIYAYNKIDQISIEE----VDRI---A-R-QPNSVVVSCNMK 121 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~----dd~~-~~l~-~~~~~kP~IlV~NKiDl~~~e~----l~~l---~-~-~~~~vpISA~~~ 121 (188)
-.+.++|+++ +.|+.. .+.+ ..+. .....+|.++|+||+|+.+.++ ++.+ + . ..+++++||.++
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~ 161 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ 161 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3589999997 777642 2233 3332 1235799999999999986532 3222 2 1 136899999999
Q ss_pred ccHHHHH
Q psy7063 122 LNLDYLL 128 (188)
Q Consensus 122 ~gld~L~ 128 (188)
.|+++|.
T Consensus 162 ~g~~~L~ 168 (307)
T 1t9h_A 162 DSLADII 168 (307)
T ss_dssp TTCTTTG
T ss_pred CCHHHHH
Confidence 9876543
No 179
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.19 E-value=0.0001 Score=66.77 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=50.4
Q ss_pred cccceeeEEE-EecCCc---hHHHHHHHh-cCCCCcEEEEEecCCCCCh--HHH-HHHh-------cC---CCEEEEecc
Q psy7063 58 SKLTLKNVLF-REDCNA---DELIDVINA-NRVYLPCIYAYNKIDQISI--EEV-DRIA-------RQ---PNSVVVSCN 119 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP~IlV~NKiDl~~~--e~l-~~l~-------~~---~~~vpISA~ 119 (188)
.++..||+++ ++|++. ....+.+.. .....|+|+|+||+|+... +.+ ..+. .+ ..++++||+
T Consensus 70 ~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAk 149 (501)
T 1zo1_I 70 RGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAK 149 (501)
T ss_dssp SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred HHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence 4578899887 788753 221222211 2246899999999999742 222 1111 11 248999999
Q ss_pred ccccHHHHHHHHHHh
Q psy7063 120 MKLNLDYLLDIIWLY 134 (188)
Q Consensus 120 ~~~gld~L~~~I~~~ 134 (188)
+|.|+++|.+.|...
T Consensus 150 tG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 150 AGTGIDELLDAILLQ 164 (501)
T ss_dssp TCTTCTTHHHHTTTT
T ss_pred eccCcchhhhhhhhh
Confidence 999999999998754
No 180
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.18 E-value=0.00023 Score=61.94 Aligned_cols=72 Identities=15% Similarity=0.127 Sum_probs=46.2
Q ss_pred cceeeEEEEecCC----chHHH-HHHHh-cCCCCcEEEEEecCCCCChHH---HHHH----hcC-CCEEEEeccccccHH
Q psy7063 60 LTLKNVLFREDCN----ADELI-DVINA-NRVYLPCIYAYNKIDQISIEE---VDRI----ARQ-PNSVVVSCNMKLNLD 125 (188)
Q Consensus 60 i~~ADvvl~~D~s----~dd~~-~~l~~-~~~~kP~IlV~NKiDl~~~e~---l~~l----~~~-~~~vpISA~~~~gld 125 (188)
+.++|+++++++. ....+ ..+.. ....+|.++|+||+|+.+.+. ++.+ ... .+++++||.++.|++
T Consensus 128 ~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~ 207 (358)
T 2rcn_A 128 AANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLK 207 (358)
T ss_dssp EECCCEEEEEEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHH
T ss_pred HhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHH
Confidence 6899999744432 12222 22211 124688899999999987643 2222 121 258999999999999
Q ss_pred HHHHHH
Q psy7063 126 YLLDII 131 (188)
Q Consensus 126 ~L~~~I 131 (188)
.|...+
T Consensus 208 ~L~~~~ 213 (358)
T 2rcn_A 208 PLEEAL 213 (358)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887643
No 181
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=97.16 E-value=0.00019 Score=49.40 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=29.7
Q ss_pred cEEeccC--------------CC---CCCCCCcccCCCccccCCCeEEEee
Q psy7063 154 GLILRKG--------------GT---STKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 154 p~il~~g--------------g~---~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
++.+|+| |+ .|+.+||+|+++|+|++||+|+|++
T Consensus 17 ~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIit 67 (78)
T 3hvz_A 17 VISLPIGSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLT 67 (78)
T ss_dssp EEEEETTCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEEE
T ss_pred EEEecCCCCHHHHHHHhhhhhhcceEEEEECCEEcCCCcccCCCCEEEEEc
Confidence 6888998 21 5788999999999999999999986
No 182
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.11 E-value=0.0003 Score=60.19 Aligned_cols=107 Identities=8% Similarity=-0.092 Sum_probs=58.8
Q ss_pred ceeEEEccCCccchhc---hhhHHHHHHhhhhhcccceeeEEE-EecCCc----hHHHHHHHh-cCCCCcEEEEEecCCC
Q psy7063 28 SKGTFQSYTSSINRHY---YYKSARAYEADTLPSKLTLKNVLF-REDCNA----DELIDVINA-NRVYLPCIYAYNKIDQ 98 (188)
Q Consensus 28 ~~~~~~~~~~~ln~~l---~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s~----dd~~~~l~~-~~~~kP~IlV~NKiDl 98 (188)
.+++|+..|+...... ++.....+......|.-..+++++ +.|++. .+....+.. ....+|+++|+||+|+
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl 209 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDL 209 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGG
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccc
Confidence 4578888776321100 222111122222223235567776 566542 222223322 2346899999999999
Q ss_pred CChHH--HHHHh----c----CCCEEEEeccccccHHHHHHHHHHh
Q psy7063 99 ISIEE--VDRIA----R----QPNSVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 99 ~~~e~--l~~l~----~----~~~~vpISA~~~~gld~L~~~I~~~ 134 (188)
.+... ...+. . +..++++||+++.|+++|.+.+.+.
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 210 MDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp SCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred cCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 75422 22221 1 1135779999999999999888763
No 183
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.06 E-value=0.0013 Score=55.30 Aligned_cols=77 Identities=10% Similarity=0.062 Sum_probs=46.3
Q ss_pred hhhhcccceeeEEE-EecCCch----HH---HHHHHh---cCCCCcEEEEEecCCCCChHH-----------HHHHh-cC
Q psy7063 54 DTLPSKLTLKNVLF-REDCNAD----EL---IDVINA---NRVYLPCIYAYNKIDQISIEE-----------VDRIA-RQ 110 (188)
Q Consensus 54 ~~~~~~i~~ADvvl-~~D~s~d----d~---~~~l~~---~~~~kP~IlV~NKiDl~~~e~-----------l~~l~-~~ 110 (188)
.+....+.+||+++ ++|++.. ++ ...+.. ....+|+++|+||+|+...+. +..+. .+
T Consensus 72 ~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~ 151 (307)
T 3r7w_A 72 KQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEF 151 (307)
T ss_dssp TTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHc
Confidence 33344567899998 8898742 22 111211 224699999999999986221 12222 22
Q ss_pred ----CCEEEEeccccccHHHHHHHH
Q psy7063 111 ----PNSVVVSCNMKLNLDYLLDII 131 (188)
Q Consensus 111 ----~~~vpISA~~~~gld~L~~~I 131 (188)
..++++||++ .|+.++...+
T Consensus 152 g~~~~~~~~tSa~~-~~i~e~~~~i 175 (307)
T 3r7w_A 152 GFPNLIGFPTSIWD-ESLYKAWSQI 175 (307)
T ss_dssp TCCSCEEEECCTTS-SHHHHHHHHH
T ss_pred CCCCeEEEEeeecC-ChHHHHHHHH
Confidence 3578899999 5665544333
No 184
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.02 E-value=0.00025 Score=55.84 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=36.2
Q ss_pred CcEEEEEecCCCCCh-----HHHHH-Hh---cCCCEEEEeccccccHHHHHHHHHHhcc
Q psy7063 87 LPCIYAYNKIDQISI-----EEVDR-IA---RQPNSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 87 kP~IlV~NKiDl~~~-----e~l~~-l~---~~~~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
+|.++|+||+|+.+. +++.. +. ....++++||++|.|+++|.+.|.+.+.
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 456999999998642 22221 12 1235899999999999999999987664
No 185
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.00 E-value=0.00077 Score=59.41 Aligned_cols=68 Identities=16% Similarity=0.036 Sum_probs=42.4
Q ss_pred ccceeeEEE-EecCCchHHH----------HHHHh-cCCC-CcEEEEEecCCCCC----hHH-------HHHHh---cC-
Q psy7063 59 KLTLKNVLF-REDCNADELI----------DVINA-NRVY-LPCIYAYNKIDQIS----IEE-------VDRIA---RQ- 110 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd~~----------~~l~~-~~~~-kP~IlV~NKiDl~~----~e~-------l~~l~---~~- 110 (188)
++..||+++ ++|++...+. +.+.. .... .|+++|+||+|+.+ .+. +..+. .+
T Consensus 104 ~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~ 183 (435)
T 1jny_A 104 GASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFN 183 (435)
T ss_dssp TSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCC
Confidence 578999997 8898754221 11111 1123 46899999999975 111 12221 11
Q ss_pred ---CCEEEEeccccccHHH
Q psy7063 111 ---PNSVVVSCNMKLNLDY 126 (188)
Q Consensus 111 ---~~~vpISA~~~~gld~ 126 (188)
..++++||++|.|+++
T Consensus 184 ~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 184 TNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp CTTCEEEECBTTTTBTTTB
T ss_pred cCCceEEEeecccCccccc
Confidence 2489999999999973
No 186
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.85 E-value=0.00098 Score=62.41 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=51.5
Q ss_pred ccceeeEEE-EecCCch---HHHHHHH-h-cCCCCcEEEEEecCCCCChH--------H-------HH-----HHhc---
Q psy7063 59 KLTLKNVLF-REDCNAD---ELIDVIN-A-NRVYLPCIYAYNKIDQISIE--------E-------VD-----RIAR--- 109 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d---d~~~~l~-~-~~~~kP~IlV~NKiDl~~~e--------~-------l~-----~l~~--- 109 (188)
.+.+||++| ++|++.. +..+.+. . ....+|+++|+||+|+.... + +. .+..
T Consensus 197 ~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~ 276 (695)
T 2j69_A 197 YVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCT 276 (695)
T ss_dssp HHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGB
T ss_pred HHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467799998 7887521 2122232 1 22368999999999986432 1 11 1211
Q ss_pred -------CCCEEEEecc--------------ccccHHHHHHHHHHhcc
Q psy7063 110 -------QPNSVVVSCN--------------MKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 110 -------~~~~vpISA~--------------~~~gld~L~~~I~~~L~ 136 (188)
...++++||+ ++.|+++|.+.|.+.+.
T Consensus 277 ~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 277 VEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp SSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred ccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 1258999999 99999999999888764
No 187
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.72 E-value=0.0015 Score=58.15 Aligned_cols=70 Identities=14% Similarity=0.031 Sum_probs=42.6
Q ss_pred cccceeeEEE-EecCCchH----------HHHHHH-hcCCCCc-EEEEEecCCCCC----hHH-------HHHH-h---c
Q psy7063 58 SKLTLKNVLF-REDCNADE----------LIDVIN-ANRVYLP-CIYAYNKIDQIS----IEE-------VDRI-A---R 109 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~dd----------~~~~l~-~~~~~kP-~IlV~NKiDl~~----~e~-------l~~l-~---~ 109 (188)
.++..||++| ++|++... ..+.+. ......| +|+|+||+|+.+ .+. +..+ . .
T Consensus 140 ~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g 219 (467)
T 1r5b_A 140 NGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAG 219 (467)
T ss_dssp --TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred hhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcC
Confidence 3578899997 88987432 122221 1224577 899999999953 121 1111 1 1
Q ss_pred C-----CCEEEEeccccccHHHH
Q psy7063 110 Q-----PNSVVVSCNMKLNLDYL 127 (188)
Q Consensus 110 ~-----~~~vpISA~~~~gld~L 127 (188)
+ ..++|+||++|.|++++
T Consensus 220 ~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 220 YNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp CCHHHHEEEEECBTTTTBTTSSC
T ss_pred CCccCCceEEecccccccccccc
Confidence 1 23799999999999763
No 188
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.63 E-value=0.004 Score=61.84 Aligned_cols=78 Identities=17% Similarity=0.046 Sum_probs=50.6
Q ss_pred ccceeeEEE-EecCCc---hHHHHHHHh-cCCCCc-EEEEEecCCCCCh-HH-------HHHHh---cC----CCEEEEe
Q psy7063 59 KLTLKNVLF-REDCNA---DELIDVINA-NRVYLP-CIYAYNKIDQISI-EE-------VDRIA---RQ----PNSVVVS 117 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~---dd~~~~l~~-~~~~kP-~IlV~NKiDl~~~-e~-------l~~l~---~~----~~~vpIS 117 (188)
++..||++| ++|++. ++..+.+.. ....+| +|+|+||+|+.+. +. +..+. .+ .+++++|
T Consensus 379 gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvS 458 (1289)
T 3avx_A 379 GAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGS 458 (1289)
T ss_dssp TSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECC
T ss_pred HHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEE
Confidence 578899997 888763 122222211 113578 6899999999852 21 11121 11 3589999
Q ss_pred cccc--------ccHHHHHHHHHHhcc
Q psy7063 118 CNMK--------LNLDYLLDIIWLYLS 136 (188)
Q Consensus 118 A~~~--------~gld~L~~~I~~~L~ 136 (188)
|++| .|+++|.+.|.+.++
T Consensus 459 AktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 459 ALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp STTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred eccCCCCCccccccchhhHhHHhhhcC
Confidence 9999 578999999988664
No 189
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.51 E-value=0.0056 Score=48.82 Aligned_cols=106 Identities=8% Similarity=0.004 Sum_probs=53.8
Q ss_pred eEEEccCCccchhchhhHHHHHHhhhhhcccceeeEEE-EecCC---chH--HHHHHHh---cCCCCcEEEEEecCCCCC
Q psy7063 30 GTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLF-REDCN---ADE--LIDVINA---NRVYLPCIYAYNKIDQIS 100 (188)
Q Consensus 30 ~~~~~~~~~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl-~~D~s---~dd--~~~~l~~---~~~~kP~IlV~NKiDl~~ 100 (188)
+.|++.|+-.+.......+.+.+..........+|++| ++|++ ..+ ....+.. ....+|+++|+||+|+..
T Consensus 80 i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~ 159 (239)
T 3lxx_A 80 LVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLG 159 (239)
T ss_dssp EEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-
T ss_pred EEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCC
Confidence 46777666333222222222222233333457889997 78864 222 1111111 112469999999999874
Q ss_pred hHH-----------HHHHh-cC-CCEEEEeccc-----cccHHHHHHHHHHhc
Q psy7063 101 IEE-----------VDRIA-RQ-PNSVVVSCNM-----KLNLDYLLDIIWLYL 135 (188)
Q Consensus 101 ~e~-----------l~~l~-~~-~~~vpISA~~-----~~gld~L~~~I~~~L 135 (188)
... +..+. .+ ...+++++.. ..++.+|++.|.+.+
T Consensus 160 ~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 160 DTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp -----------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 322 22221 12 2366676553 367888888887766
No 190
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.41 E-value=0.0037 Score=50.69 Aligned_cols=77 Identities=8% Similarity=0.015 Sum_probs=47.9
Q ss_pred cceeeEEE-EecCCc---hH--HHHHHHhc----CCCCcEEEEEecCCCCCh--H---------HHHHHh-cCC-CEEEE
Q psy7063 60 LTLKNVLF-REDCNA---DE--LIDVINAN----RVYLPCIYAYNKIDQISI--E---------EVDRIA-RQP-NSVVV 116 (188)
Q Consensus 60 i~~ADvvl-~~D~s~---dd--~~~~l~~~----~~~kP~IlV~NKiDl~~~--e---------~l~~l~-~~~-~~vpI 116 (188)
...+|++| ++|++. .+ ..+.+... ....|+|+|.||+|+... + .+..+. .+. ..+++
T Consensus 103 ~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~ 182 (247)
T 3lxw_A 103 APGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAF 182 (247)
T ss_dssp TTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEEC
T ss_pred CCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEE
Confidence 48899998 788752 11 22223221 125799999999998642 1 122222 222 35556
Q ss_pred eccc-----cccHHHHHHHHHHhcc
Q psy7063 117 SCNM-----KLNLDYLLDIIWLYLS 136 (188)
Q Consensus 117 SA~~-----~~gld~L~~~I~~~L~ 136 (188)
++.. +.|+++|++.|.+.+.
T Consensus 183 ~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 183 DNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCccccHHHHHHHHHHHHHHHH
Confidence 6443 6899999999999875
No 191
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.41 E-value=0.0077 Score=46.30 Aligned_cols=77 Identities=12% Similarity=-0.002 Sum_probs=49.5
Q ss_pred cceeeEEE-EecCCchH----HHH---HHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEecccccc
Q psy7063 60 LTLKNVLF-REDCNADE----LID---VINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKLN 123 (188)
Q Consensus 60 i~~ADvvl-~~D~s~dd----~~~---~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~g 123 (188)
..++|.++ +.|++... ... .+.. .....|+++|+||+|+... ++...+. . ...++.+||+++.|
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~ 154 (199)
T 2f9l_A 75 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTN 154 (199)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 45678776 78876432 111 1211 1246899999999998632 2222232 1 12367799999999
Q ss_pred HHHHHHHHHHhcc
Q psy7063 124 LDYLLDIIWLYLS 136 (188)
Q Consensus 124 ld~L~~~I~~~L~ 136 (188)
++++.+.|.+.+.
T Consensus 155 i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 155 VEEAFKNILTEIY 167 (199)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887764
No 192
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.38 E-value=0.0052 Score=57.44 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=22.0
Q ss_pred EEEEeccccccHHHHHHHHHHhcc
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
+++.||.++.|++.|++.|.++++
T Consensus 258 v~~gSA~~~~Gv~~LLd~i~~~lP 281 (691)
T 1dar_A 258 VFLGSALKNKGVQLLLDAVVDYLP 281 (691)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHSC
T ss_pred EEEeecccCcCHHHHHHHHHHhCC
Confidence 666799999999999999999986
No 193
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.27 E-value=0.014 Score=44.80 Aligned_cols=75 Identities=15% Similarity=0.103 Sum_probs=49.1
Q ss_pred ceeeEEE-EecCCc---h-H--HHHHHHhcCCCCcEEEEEecCCCCChHH----HHHH----hcC---CCEEEEeccccc
Q psy7063 61 TLKNVLF-REDCNA---D-E--LIDVINANRVYLPCIYAYNKIDQISIEE----VDRI----ARQ---PNSVVVSCNMKL 122 (188)
Q Consensus 61 ~~ADvvl-~~D~s~---d-d--~~~~l~~~~~~kP~IlV~NKiDl~~~e~----l~~l----~~~---~~~vpISA~~~~ 122 (188)
..++.++ +.|++. . + +...+. ....|.++|.||+|+.+..+ +..+ ... ...+|+||+++.
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~ 184 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAV--DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQ 184 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHH--HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTB
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHH--HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCC
Confidence 4567765 677652 1 1 222222 24689999999999886432 1111 121 236889999999
Q ss_pred cHHHHHHHHHHhccc
Q psy7063 123 NLDYLLDIIWLYLSL 137 (188)
Q Consensus 123 gld~L~~~I~~~L~~ 137 (188)
|+++|.+.|.+.+..
T Consensus 185 ~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 185 GVDKLRQKLDTWFSE 199 (210)
T ss_dssp SHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999987653
No 194
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.21 E-value=0.0053 Score=53.17 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=47.8
Q ss_pred ccceeeEEE-EecCCc----------h-HHHHH------HHhc--CCCCcEEEEEecCCCCC------------------
Q psy7063 59 KLTLKNVLF-REDCNA----------D-ELIDV------INAN--RVYLPCIYAYNKIDQIS------------------ 100 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~----------d-d~~~~------l~~~--~~~kP~IlV~NKiDl~~------------------ 100 (188)
-..+|+.+| ++|++. . .+.+. +... -...|+|+++||+|+..
T Consensus 221 ~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~ 300 (362)
T 1zcb_A 221 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGD 300 (362)
T ss_dssp SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSC
T ss_pred HhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCC
Confidence 367899997 888875 1 12221 1111 13689999999999741
Q ss_pred ---hHHHHHHh--------c---C--CCEEEEeccccccHHHHHHHHHHhc
Q psy7063 101 ---IEEVDRIA--------R---Q--PNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 101 ---~e~l~~l~--------~---~--~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
.++...+. . . -.++.+||+++.|++++.+.+.+.+
T Consensus 301 ~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 301 PHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp TTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 12221110 1 1 1256799999999999887776643
No 195
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.19 E-value=0.014 Score=52.90 Aligned_cols=27 Identities=11% Similarity=0.016 Sum_probs=23.0
Q ss_pred EEEEeccccccHHHHHHHHHHhcccce
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLIR 139 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~ir 139 (188)
+++.||.++.|++.|++.|.++++--.
T Consensus 254 v~~gSA~~~~Gv~~LLd~i~~~~P~P~ 280 (529)
T 2h5e_A 254 VFFGTALGNFGVDHMLDGLVEWAPAPM 280 (529)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSCSSC
T ss_pred EEeeecccCCCHHHHHHHHHHhCCCCC
Confidence 566899999999999999999987443
No 196
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.17 E-value=0.004 Score=53.78 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=48.2
Q ss_pred ccceeeEEE-EecCCch-----------HHHHH------HHhc--CCCCcEEEEEecCCCCC------------------
Q psy7063 59 KLTLKNVLF-REDCNAD-----------ELIDV------INAN--RVYLPCIYAYNKIDQIS------------------ 100 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d-----------d~~~~------l~~~--~~~kP~IlV~NKiDl~~------------------ 100 (188)
-..+|+.+| ++|++.. .+.+. +... -...|+|+++||+|+..
T Consensus 213 yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~ 292 (353)
T 1cip_A 213 CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 292 (353)
T ss_dssp GCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSC
T ss_pred HHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCC
Confidence 368899997 8887751 12221 1111 13689999999999841
Q ss_pred --hHHHHHH-h----c------CC--CEEEEeccccccHHHHHHHHHHhc
Q psy7063 101 --IEEVDRI-A----R------QP--NSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 101 --~e~l~~l-~----~------~~--~~vpISA~~~~gld~L~~~I~~~L 135 (188)
.++...+ . . .. .++.+||+++.|++++.+.+.+.+
T Consensus 293 ~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 293 NTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence 1222111 1 1 11 256799999999999888777654
No 197
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.10 E-value=0.012 Score=50.71 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=30.7
Q ss_pred cCCCCcEEEEEecCCCCChHHHHH----Hh----cC-CCEEEEecccccc---HHHHHHHHHHhcccc
Q psy7063 83 NRVYLPCIYAYNKIDQISIEEVDR----IA----RQ-PNSVVVSCNMKLN---LDYLLDIIWLYLSLI 138 (188)
Q Consensus 83 ~~~~kP~IlV~NKiDl~~~e~l~~----l~----~~-~~~vpISA~~~~g---ld~L~~~I~~~L~~i 138 (188)
.....|+|+|+||+|+.+..++.. +. .. ..++++||+++.| +..|.+.|.+.++.-
T Consensus 171 l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip~~ 238 (361)
T 2qag_A 171 IHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFS 238 (361)
T ss_dssp TCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHHHHHHHHHTCSCE
T ss_pred hccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHHHHHHHHhcCCCC
Confidence 345689999999999987654422 11 11 2478899999877 334556666655543
No 198
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.07 E-value=0.01 Score=54.05 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=22.8
Q ss_pred EEEEeccccccHHHHHHHHHHhcccc
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLI 138 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~i 138 (188)
+++.||.++.|++.|++.|.++++--
T Consensus 271 V~~gSA~~~~Gv~~LLd~iv~~~PsP 296 (548)
T 3vqt_A 271 VFFGSAINNFGVREMLDMFVEFAPGP 296 (548)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHSCCS
T ss_pred eeecccccCcCHHHHHHHHHHhCCCC
Confidence 45679999999999999999999743
No 199
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=95.92 E-value=0.012 Score=55.05 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=22.3
Q ss_pred EEEEeccccccHHHHHHHHHHhccc
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~ 137 (188)
+++.||.++.|++.|++.|.++++-
T Consensus 256 v~~gSA~~~~Gv~~LLd~i~~~lPs 280 (693)
T 2xex_A 256 VLCGTAFKNKGVQLMLDAVIDYLPS 280 (693)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred EEEeecccCcCHHHHHHHHHHHCCC
Confidence 6678999999999999999999973
No 200
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=95.88 E-value=0.016 Score=54.31 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=22.4
Q ss_pred EEEEeccccccHHHHHHHHHHhccc
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~ 137 (188)
+++.||.++.|++.|++.|.++++-
T Consensus 264 v~~gSa~~~~Gv~~LLd~i~~~lPs 288 (704)
T 2rdo_7 264 VTCGSAFKNKGVQAMLDAVIDYLPS 288 (704)
T ss_pred EEEeecccCccHHHHHHHHHHHCCC
Confidence 6678999999999999999999873
No 201
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.77 E-value=0.0094 Score=55.44 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.9
Q ss_pred EEEEeccccccHHHHHHHHHHhcc
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
+++.||+++.|++.|++.|.++++
T Consensus 250 v~~~SA~~~~Gv~~Ll~~i~~~lp 273 (665)
T 2dy1_A 250 VALASGEREIGVLPLLELILEALP 273 (665)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEEeecccCcCHHHHHHHHHHhCC
Confidence 677899999999999999999885
No 202
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=95.71 E-value=0.012 Score=48.05 Aligned_cols=77 Identities=5% Similarity=-0.081 Sum_probs=49.5
Q ss_pred cceeeEEE-EecCCch-------HHHH---HHHhc--CCCCcEEEEEecC-CCCC---hHHHH-HHh--cC---CCEEEE
Q psy7063 60 LTLKNVLF-REDCNAD-------ELID---VINAN--RVYLPCIYAYNKI-DQIS---IEEVD-RIA--RQ---PNSVVV 116 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d-------d~~~---~l~~~--~~~kP~IlV~NKi-Dl~~---~e~l~-~l~--~~---~~~vpI 116 (188)
..++|.+| |+|.++. ++.+ .+... ....|.++.+||. |+.. ..++. .+. .. -.+.++
T Consensus 123 y~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W~Iq~c 202 (227)
T 3l82_B 123 CEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDT 202 (227)
T ss_dssp HHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEEEE
T ss_pred hcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCEEEEEe
Confidence 57788998 8887632 1211 11111 1467999999996 6653 33442 221 11 147889
Q ss_pred eccccccHHHHHHHHHHhcc
Q psy7063 117 SCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 117 SA~~~~gld~L~~~I~~~L~ 136 (188)
||.+|.|+.+=++.+.+.+.
T Consensus 203 sA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 203 EAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp ETTTCTTHHHHHHHHTTTTT
T ss_pred ECCCCcCHHHHHHHHHHHHH
Confidence 99999999998888877664
No 203
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.58 E-value=0.027 Score=43.13 Aligned_cols=75 Identities=12% Similarity=0.016 Sum_probs=47.1
Q ss_pred ceeeEEE-EecCCchH----HH---HHHHh-cCCCCcEEEEEecCCCCCh-----HHHHHHh-c-CCCEEEEeccccccH
Q psy7063 61 TLKNVLF-REDCNADE----LI---DVINA-NRVYLPCIYAYNKIDQISI-----EEVDRIA-R-QPNSVVVSCNMKLNL 124 (188)
Q Consensus 61 ~~ADvvl-~~D~s~dd----~~---~~l~~-~~~~kP~IlV~NKiDl~~~-----e~l~~l~-~-~~~~vpISA~~~~gl 124 (188)
.+++..+ +.|.+... +. ..+.. .....|+++|+||+|+... +....+. . .-..+.+||+++.|+
T Consensus 100 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v 179 (191)
T 1oix_A 100 RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNV 179 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 4567665 77876332 11 11211 1246899999999998532 2222232 1 123677999999999
Q ss_pred HHHHHHHHHhc
Q psy7063 125 DYLLDIIWLYL 135 (188)
Q Consensus 125 d~L~~~I~~~L 135 (188)
+++.+.|.+.+
T Consensus 180 ~~l~~~l~~~i 190 (191)
T 1oix_A 180 EAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 204
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.97 E-value=0.016 Score=44.93 Aligned_cols=63 Identities=10% Similarity=0.117 Sum_probs=29.7
Q ss_pred ceeeEEE-EecCC-c----hHHHHHH----Hh----cCCCCcEEEEEecCCCCChHH-----------HHHHhc--CCCE
Q psy7063 61 TLKNVLF-REDCN-A----DELIDVI----NA----NRVYLPCIYAYNKIDQISIEE-----------VDRIAR--QPNS 113 (188)
Q Consensus 61 ~~ADvvl-~~D~s-~----dd~~~~l----~~----~~~~kP~IlV~NKiDl~~~e~-----------l~~l~~--~~~~ 113 (188)
..+|+++ ++|++ . ++....+ .. .....|+++|+||+|+..... +..+.. ...+
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSL 160 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 3478887 78876 2 1222221 11 124689999999999975321 111110 1136
Q ss_pred EEEecccccc
Q psy7063 114 VVVSCNMKLN 123 (188)
Q Consensus 114 vpISA~~~~g 123 (188)
+++||++|.+
T Consensus 161 ~~~Sa~~~~~ 170 (218)
T 1nrj_B 161 NEVERKINEE 170 (218)
T ss_dssp HC--------
T ss_pred cccccccccc
Confidence 7799998865
No 205
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.84 E-value=0.022 Score=48.43 Aligned_cols=76 Identities=12% Similarity=0.063 Sum_probs=45.8
Q ss_pred HhhhhhcccceeeEEE-EecCC-----chHHHHHHHh-cCCCCcEEEEEecCCCCChH-H-HHHHh----cC-CCEEEEe
Q psy7063 52 EADTLPSKLTLKNVLF-REDCN-----ADELIDVINA-NRVYLPCIYAYNKIDQISIE-E-VDRIA----RQ-PNSVVVS 117 (188)
Q Consensus 52 ~~~~~~~~i~~ADvvl-~~D~s-----~dd~~~~l~~-~~~~kP~IlV~NKiDl~~~e-~-l~~l~----~~-~~~vpIS 117 (188)
+..+....+.++|++| ++|.+ ..+....+.. ....+|+|+|+||+|+.+.. . .+.+. .. ..++++|
T Consensus 162 ~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~ 241 (360)
T 3t34_A 162 IENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVV 241 (360)
T ss_dssp HHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEEC
T ss_pred HHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEE
Confidence 3344444578999776 55532 1222333332 23468999999999987542 2 22222 11 2478999
Q ss_pred ccccccHHHH
Q psy7063 118 CNMKLNLDYL 127 (188)
Q Consensus 118 A~~~~gld~L 127 (188)
+.++.+++++
T Consensus 242 ~~s~~~i~~~ 251 (360)
T 3t34_A 242 NRSQADINKN 251 (360)
T ss_dssp CCCHHHHHTT
T ss_pred ECChHHhccC
Confidence 9998888664
No 206
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.52 E-value=0.042 Score=45.89 Aligned_cols=57 Identities=12% Similarity=0.028 Sum_probs=29.4
Q ss_pred HHHHhcCCCCcEEEEEecCCCCChHHHH----H---H-hc-CCCEEEEeccccccHHHHHHHHHHhc
Q psy7063 78 DVINANRVYLPCIYAYNKIDQISIEEVD----R---I-AR-QPNSVVVSCNMKLNLDYLLDIIWLYL 135 (188)
Q Consensus 78 ~~l~~~~~~kP~IlV~NKiDl~~~e~l~----~---l-~~-~~~~vpISA~~~~gld~L~~~I~~~L 135 (188)
+.+.......|+++|+||+|+.+..++. . + .. ...++++||+++ |++++...+.+.+
T Consensus 147 ~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 147 AFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHh
Confidence 3333333457999999999998654331 1 1 11 135788999999 9998777666654
No 207
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=94.46 E-value=0.024 Score=48.92 Aligned_cols=22 Identities=0% Similarity=-0.225 Sum_probs=17.6
Q ss_pred EEEEeccccccHHHHHHHHHHh
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~ 134 (188)
++.+||+++.|++++.+.+.+.
T Consensus 321 ~~eTSA~d~~nV~~vF~~v~~~ 342 (354)
T 2xtz_A 321 IYRTTALDQKLVKKTFKLVDET 342 (354)
T ss_dssp EEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEEeecchhHHHHHHHHHHH
Confidence 4679999999998877776654
No 208
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.44 E-value=0.073 Score=40.04 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=25.6
Q ss_pred eeeEEE-EecCC-chH-HH---HHH----Hh----cCCCCcEEEEEecCCCCCh
Q psy7063 62 LKNVLF-REDCN-ADE-LI---DVI----NA----NRVYLPCIYAYNKIDQISI 101 (188)
Q Consensus 62 ~ADvvl-~~D~s-~dd-~~---~~l----~~----~~~~kP~IlV~NKiDl~~~ 101 (188)
.||+++ ++|++ ..+ +. ..+ .. .....|+++|+||+|+.+.
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 388887 88987 332 11 111 11 1236899999999998754
No 209
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.33 E-value=0.048 Score=48.09 Aligned_cols=57 Identities=18% Similarity=0.053 Sum_probs=26.0
Q ss_pred CCCCcEEEEEecCCCCChHHHHHH--------h-cCCCEEEEeccccccHHHHHHHHHHhccccee
Q psy7063 84 RVYLPCIYAYNKIDQISIEEVDRI--------A-RQPNSVVVSCNMKLNLDYLLDIIWLYLSLIRV 140 (188)
Q Consensus 84 ~~~kP~IlV~NKiDl~~~e~l~~l--------~-~~~~~vpISA~~~~gld~L~~~I~~~L~~irV 140 (188)
....|+|+|+||+|+.+..++..+ . ....++.+||+++.+.+.+...+.+.++.-.|
T Consensus 165 ~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iPfavv 230 (418)
T 2qag_C 165 HEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVV 230 (418)
T ss_dssp TTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------CCEEEC
T ss_pred hccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCCccee
Confidence 346899999999999876544321 1 12346778999999998887777777664443
No 210
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=94.30 E-value=0.017 Score=53.37 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=21.9
Q ss_pred CEEEEeccccccHHHHHHHHHHhcc
Q psy7063 112 NSVVVSCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 112 ~~vpISA~~~~gld~L~~~I~~~L~ 136 (188)
++++.||.++.|++.|++.|.++++
T Consensus 214 Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 214 PLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp CCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred cccccccccCCCchhHhhhhhcccc
Confidence 4667899999999999999998775
No 211
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=93.81 E-value=0.042 Score=48.34 Aligned_cols=22 Identities=5% Similarity=-0.141 Sum_probs=17.1
Q ss_pred EEEEeccccccHHHHHHHHHHh
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~ 134 (188)
.+.+||+++.|++.+.+.+.+.
T Consensus 361 ~~~TSA~d~~nV~~vF~~v~~~ 382 (402)
T 1azs_C 361 PHFTCAVDTENIRRVFNDCRDI 382 (402)
T ss_dssp EEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEEeecCcCHHHHHHHHHHH
Confidence 3569999999998877766554
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=93.77 E-value=0.095 Score=44.64 Aligned_cols=77 Identities=5% Similarity=-0.081 Sum_probs=49.9
Q ss_pred cceeeEEE-EecCCch-------HHH---HHHHh--cCCCCcEEEEEec-CCCCC---hHHHH-HHh--cC---CCEEEE
Q psy7063 60 LTLKNVLF-REDCNAD-------ELI---DVINA--NRVYLPCIYAYNK-IDQIS---IEEVD-RIA--RQ---PNSVVV 116 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d-------d~~---~~l~~--~~~~kP~IlV~NK-iDl~~---~e~l~-~l~--~~---~~~vpI 116 (188)
..++|.+| |+|.++- ++. ..+.. .....|.++.+|| -|+.. ..++. .+. .. -.+.++
T Consensus 208 y~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~W~Iq~c 287 (312)
T 3l2o_B 208 CEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDT 287 (312)
T ss_dssp HHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEEEE
T ss_pred hcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCcEEEEec
Confidence 46788888 8887632 221 12211 1356899999997 47753 33442 221 11 147889
Q ss_pred eccccccHHHHHHHHHHhcc
Q psy7063 117 SCNMKLNLDYLLDIIWLYLS 136 (188)
Q Consensus 117 SA~~~~gld~L~~~I~~~L~ 136 (188)
||.+|+|+.+=++.+.+.+.
T Consensus 288 sA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 288 EAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp ETTTCTTHHHHHHHHHHHSC
T ss_pred ccCCCcCHHHHHHHHHHHHH
Confidence 99999999998888888765
No 213
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=92.84 E-value=0.13 Score=43.97 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=17.2
Q ss_pred EEEEeccccccHHHHHHHHHHh
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLY 134 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~ 134 (188)
...+||+.+.|++.+.+.+.+.
T Consensus 294 ~~~TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 294 SHFTCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp EEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEEeecCHHHHHHHHHHHHH
Confidence 4569999999998877776654
No 214
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=92.69 E-value=0.1 Score=47.48 Aligned_cols=48 Identities=19% Similarity=0.118 Sum_probs=32.4
Q ss_pred cccceeeEEE-EecCCc----hHHHHHHHhcC-CCCcEEEEEecCCCCChHHHH
Q psy7063 58 SKLTLKNVLF-REDCNA----DELIDVINANR-VYLPCIYAYNKIDQISIEEVD 105 (188)
Q Consensus 58 ~~i~~ADvvl-~~D~s~----dd~~~~l~~~~-~~kP~IlV~NKiDl~~~e~l~ 105 (188)
..+..||+++ ++|++. +.....+.... ...|+++|+||+|+.+.+++.
T Consensus 184 ~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~ 237 (550)
T 2qpt_A 184 WFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLM 237 (550)
T ss_dssp HHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHH
T ss_pred HHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHH
Confidence 3467899998 888753 23333333322 358999999999998765543
No 215
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=92.64 E-value=0.1 Score=44.76 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=28.1
Q ss_pred cceeeEEE-EecCCch--HHH----HHHH---hcCCCCcEEEEEecCCCCCh
Q psy7063 60 LTLKNVLF-REDCNAD--ELI----DVIN---ANRVYLPCIYAYNKIDQISI 101 (188)
Q Consensus 60 i~~ADvvl-~~D~s~d--d~~----~~l~---~~~~~kP~IlV~NKiDl~~~ 101 (188)
.++|+.++ ++|++.. +.. +.+. ......|+++|+||+|+.+.
T Consensus 70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 57889887 8898753 211 1121 12346899999999999864
No 216
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=91.59 E-value=0.3 Score=45.54 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.9
Q ss_pred EEEEeccccccHHHHHHHHHHhccc
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~ 137 (188)
+++.||.++.|+..|++.|.++++-
T Consensus 267 v~~gsa~~~~gv~~lLd~i~~~lPs 291 (709)
T 4fn5_A 267 AVCGSSFKNKGVPLVLDAVIDYLPA 291 (709)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHSCC
T ss_pred eeeeecccCCchHHHHHHHHhhCCC
Confidence 4667999999999999999999873
No 217
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=88.83 E-value=0.17 Score=32.87 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.3
Q ss_pred CCCCCcccCCCccccCCCeEEEee
Q psy7063 164 TKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 164 ~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
++..|+-+.+++.|++||.|+|++
T Consensus 39 a~vNg~lvdl~~~L~~~~~Veivt 62 (73)
T 2kmm_A 39 AKVNHKLVPLSYVLNSGDQVEVLS 62 (73)
T ss_dssp EEETTEECCTTCBCCSSSBEEEEE
T ss_pred EEECCEEeCCCcCcCCCCEEEEEE
Confidence 456888999999999999999986
No 218
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=88.54 E-value=1.2 Score=35.93 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=25.3
Q ss_pred cceeeEEE-EecCC---ch----HHHHHHHhc-C--CCCcEEEEEecCCCCChH
Q psy7063 60 LTLKNVLF-REDCN---AD----ELIDVINAN-R--VYLPCIYAYNKIDQISIE 102 (188)
Q Consensus 60 i~~ADvvl-~~D~s---~d----d~~~~l~~~-~--~~kP~IlV~NKiDl~~~e 102 (188)
...+|+++ ++|++ .. .+...+... . ..+|+++|+||+|+.+.+
T Consensus 117 ~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 45799997 65443 11 122223211 1 126999999999987543
No 219
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=87.24 E-value=0.24 Score=47.26 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=26.4
Q ss_pred ccceeeEEE-EecCCch---HHHHHHH-hcCCCCcEEEEEecCCCC
Q psy7063 59 KLTLKNVLF-REDCNAD---ELIDVIN-ANRVYLPCIYAYNKIDQI 99 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~d---d~~~~l~-~~~~~kP~IlV~NKiDl~ 99 (188)
.++.||.++ ++|++.. +-...+. .....+|.++|+||+|+.
T Consensus 118 ~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 118 ALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp HHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 467789887 7887632 1111111 122468999999999986
No 220
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=86.08 E-value=0.3 Score=34.57 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=17.5
Q ss_pred CCcccCCCccccCCCeEEEee
Q psy7063 167 SPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 167 ~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
.|+.|..+++|+|||.|+|+.
T Consensus 64 ng~~v~~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 64 FSRPIKLTDVLKEGDRIEIYR 84 (97)
T ss_dssp EECSCCTTCBCCTTCEEEECC
T ss_pred cCEECCCCccCCCCCEEEEEe
Confidence 455677999999999999973
No 221
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=81.16 E-value=0.099 Score=47.23 Aligned_cols=73 Identities=10% Similarity=0.039 Sum_probs=42.3
Q ss_pred eeeEEE-EecCCch-HHHHHHHhcCCCCcE-EEEEecCCCCChH--HHHHH--h-----------------cCCCEEEEe
Q psy7063 62 LKNVLF-REDCNAD-ELIDVINANRVYLPC-IYAYNKIDQISIE--EVDRI--A-----------------RQPNSVVVS 117 (188)
Q Consensus 62 ~ADvvl-~~D~s~d-d~~~~l~~~~~~kP~-IlV~NKiDl~~~e--~l~~l--~-----------------~~~~~vpIS 117 (188)
.+|.++ ++|++.. +....+.......|+ .+|+||+|..... .+... . .|.+.+++|
T Consensus 213 ~pd~vllVvDa~~g~~~~~~a~~~~~~~~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vs 292 (504)
T 2j37_W 213 QPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFIS 292 (504)
T ss_dssp CCSEEEEEEETTCCTTHHHHHHHHHHHHCCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHH
T ss_pred cCceEEEEEeccccccHHHHHHHHHhhcCceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeee
Confidence 566665 7776521 222222111112674 8999999987432 12211 0 122234589
Q ss_pred cccccc-HHHHHHHHHHh
Q psy7063 118 CNMKLN-LDYLLDIIWLY 134 (188)
Q Consensus 118 A~~~~g-ld~L~~~I~~~ 134 (188)
|..|.| ++.|.+.+.+.
T Consensus 293 al~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 293 KLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCTTTTTTTTHHHHTTT
T ss_pred hhcCCCcHHHHHHHHHHH
Confidence 999999 99999998865
No 222
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=79.27 E-value=1 Score=38.50 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=25.7
Q ss_pred cceeeEEE-EecCC-----------chHHHHH------HHhc--CCCCcEEEEEecCCCC
Q psy7063 60 LTLKNVLF-REDCN-----------ADELIDV------INAN--RVYLPCIYAYNKIDQI 99 (188)
Q Consensus 60 i~~ADvvl-~~D~s-----------~dd~~~~------l~~~--~~~kP~IlV~NKiDl~ 99 (188)
.++|+.+| ++|+| ...+.+. +... ....|+++++||+|+.
T Consensus 182 y~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 182 FSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp SCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHH
T ss_pred hccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhh
Confidence 78899887 78875 1112211 1111 1468999999999975
No 223
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=79.00 E-value=1 Score=32.42 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=36.1
Q ss_pred ccHHHHHHHHHHhcc--cceeeeCCCC--CCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 122 LNLDYLLDIIWLYLS--LIRVYTKKPG--APPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 122 ~gld~L~~~I~~~L~--~irVY~k~~g--~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
..+.+|++.+.+.+. .-++|. ..| .. .|.-+++ -+|++..+- =|.+|+|+|||.|.|++
T Consensus 35 ~TV~dLl~~L~~~~~~~r~~lf~-~~g~~~l--rpgIlVL-VNg~d~e~l---~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 35 TNLNGLVQLLKTNYVKERPDLLV-DQTGQTL--RPGILVL-VNSCDAEVV---GGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp CCHHHHHHHHTTTTCCSCHHHHB-CSSSSSB--CTTEEEE-ESSSBHHHH---TSSCCCCCSSCEEEEEE
T ss_pred ccHHHHHHHHHHHccccchhhEe-cCCCccc--CCCeEEE-ECCeeeecc---CCcccCCCCcCEEEEeC
Confidence 478888888887653 224443 223 33 3433344 334443321 28999999999999986
No 224
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=78.25 E-value=5.3 Score=35.18 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=24.7
Q ss_pred EecCC----chHHHHHHHhcCCCCcEEEEEecCCCCChHHHH
Q psy7063 68 REDCN----ADELIDVINANRVYLPCIYAYNKIDQISIEEVD 105 (188)
Q Consensus 68 ~~D~s----~dd~~~~l~~~~~~kP~IlV~NKiDl~~~e~l~ 105 (188)
+.|.+ ..| .+.+.......|+|+|+||+|..+.+++.
T Consensus 155 I~d~~~~l~~~D-ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~ 195 (427)
T 2qag_B 155 IAPTGHSLKSLD-LVTMKKLDSKVNIIPIIAKADAISKSELT 195 (427)
T ss_dssp ECCCC---CHHH-HHHHHHTCSCSEEEEEESCGGGSCHHHHH
T ss_pred EeCCCCCCCHHH-HHHHHHHhhCCCEEEEEcchhccchHHHH
Confidence 66654 223 34444444578999999999998776553
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=78.21 E-value=0.56 Score=41.29 Aligned_cols=41 Identities=12% Similarity=-0.018 Sum_probs=25.2
Q ss_pred cceeeEEE-EecCCc-hHHHHHHHhcCCCC-c-EEEEEecCCCCC
Q psy7063 60 LTLKNVLF-REDCNA-DELIDVINANRVYL-P-CIYAYNKIDQIS 100 (188)
Q Consensus 60 i~~ADvvl-~~D~s~-dd~~~~l~~~~~~k-P-~IlV~NKiDl~~ 100 (188)
+..+|.++ ++|++. .+....+....... | ..+|+||+|...
T Consensus 208 ~~~~d~vllVvda~~g~~~~~~~~~~~~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 208 ITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SSCCSEEEEEEEGGGGGGHHHHHHHHHTTSCSCEEEEEECSSSCS
T ss_pred HhcCcceeEEeeccccHHHHHHHHHHhhcccCCeEEEEeCCCCcc
Confidence 45688886 788753 23333332212235 6 899999999864
No 226
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=77.07 E-value=6 Score=31.51 Aligned_cols=40 Identities=8% Similarity=0.152 Sum_probs=23.7
Q ss_pred ceeeEEE-EecCCc-----h--HHHHHHHhc---CCCCcEEEEEecCCCCC
Q psy7063 61 TLKNVLF-REDCNA-----D--ELIDVINAN---RVYLPCIYAYNKIDQIS 100 (188)
Q Consensus 61 ~~ADvvl-~~D~s~-----d--d~~~~l~~~---~~~kP~IlV~NKiDl~~ 100 (188)
..+|+++ +.+++. . .+...+... ...+|+++|+||+|+.+
T Consensus 115 ~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 115 RTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp CEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred CCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 5789997 544331 1 223333221 11359999999999863
No 227
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=75.80 E-value=1.6 Score=38.19 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=38.0
Q ss_pred CCCcEEEEEecCCCC------------ChHHH----HHHh-----c----CCCEEEEec--cccccHHHHHHHHHHhccc
Q psy7063 85 VYLPCIYAYNKIDQI------------SIEEV----DRIA-----R----QPNSVVVSC--NMKLNLDYLLDIIWLYLSL 137 (188)
Q Consensus 85 ~~kP~IlV~NKiDl~------------~~e~l----~~l~-----~----~~~~vpISA--~~~~gld~L~~~I~~~L~~ 137 (188)
..+|+++|+||.|+. ....+ ..+. . +..+|++|+ ..+.|+++|.+.|.+.|+.
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 358999999999864 12221 2221 1 235899999 5677899999999999864
Q ss_pred c
Q psy7063 138 I 138 (188)
Q Consensus 138 i 138 (188)
.
T Consensus 254 g 254 (413)
T 1tq4_A 254 Y 254 (413)
T ss_dssp G
T ss_pred c
Confidence 4
No 228
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=75.36 E-value=1.6 Score=28.46 Aligned_cols=21 Identities=10% Similarity=0.259 Sum_probs=17.1
Q ss_pred CCcccCCCccccCCCeEEEee
Q psy7063 167 SPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 167 ~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
+|+.|..|+.|+|||.|.|+.
T Consensus 52 Ng~~v~~~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 52 NEEFVQKSDFIQPNDTVALIP 72 (77)
T ss_dssp TTEEECTTSEECTTCEEEEEC
T ss_pred CCEECCCCCCcCCCCEEEEEC
Confidence 455677789999999999973
No 229
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=72.57 E-value=1.5 Score=31.15 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=18.7
Q ss_pred CCCcccCCC--ccccCCCeEEEee
Q psy7063 166 YSPQRVGLA--HVMADEDVIQIVK 187 (188)
Q Consensus 166 ~~~qrvg~d--~~L~d~Dvv~iv~ 187 (188)
+.|+++++| |.|+|||+++|+-
T Consensus 68 vng~~l~k~~~~~L~~GD~l~Ll~ 91 (102)
T 3kt9_A 68 IDSVVIGKDQEVKLQPGQVLHMVN 91 (102)
T ss_dssp ETTEECCBTCEEEECTTCCEEEET
T ss_pred ECCEEcCCCCeEEeCCCCEEEEcc
Confidence 467788888 9999999999973
No 230
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=71.54 E-value=2.4 Score=27.82 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=17.0
Q ss_pred CCcccCCCccccCCCeEEEe
Q psy7063 167 SPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 167 ~~qrvg~d~~L~d~Dvv~iv 186 (188)
+|+.++.++.|+|||.|.|+
T Consensus 56 N~~~v~~~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 56 NQTLVSFDHPLTDGDEVAFF 75 (81)
T ss_dssp TTEECCTTCBCCTTCEEEEE
T ss_pred CCEECCCCCCCCCCCEEEEe
Confidence 45567789999999999986
No 231
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=69.76 E-value=3.6 Score=24.16 Aligned_cols=16 Identities=50% Similarity=0.630 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhh
Q psy7063 4 LEKISEIEKEIARTQK 19 (188)
Q Consensus 4 ~~~i~~~e~e~~~~~~ 19 (188)
..+|..||.|+.|++|
T Consensus 27 v~~~~~~~~~~~~~~~ 42 (42)
T 3g9r_A 27 KSKIKRIENEIKRIKK 42 (42)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5789999999999975
No 232
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=69.40 E-value=2.1 Score=30.84 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHHhcccc--eeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 122 LNLDYLLDIIWLYLSLI--RVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 122 ~gld~L~~~I~~~L~~i--rVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
..+.+|++.+.+...-. ++|. ..|.. .|.-+++ -+|++.+|- -|.|++|+|||.|.|++
T Consensus 43 ~TV~~Ll~~L~~~~~~~~~~lf~-~~g~l--r~~i~Vl-VN~~di~~l---~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 43 WDIRNLLVWIKKNLLKERPELFI-QGDSV--RPGILVL-INDADWELL---GELDYQLQDQDSILFIS 103 (114)
T ss_dssp CBHHHHHHHHTTTTCCSCHHHHC-CSSSC--CSSEEEE-ESSSBHHHH---CTTTCBCCSSEEEEEEE
T ss_pred CCHHHHHHHHHHHccchhHhhCc-cCCcc--cCCeEEE-ECCeeeecc---CCcCcCCCCCCEEEEeC
Confidence 47888988888765322 2333 23443 3333333 335555532 47999999999999975
No 233
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=67.67 E-value=2.8 Score=27.65 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=12.6
Q ss_pred CccccCCCeEEEee
Q psy7063 174 AHVMADEDVIQIVK 187 (188)
Q Consensus 174 d~~L~d~Dvv~iv~ 187 (188)
++.|+|||.|+|++
T Consensus 47 ~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 47 ETPVTAGDEIEILT 60 (73)
T ss_dssp TCBCCTTCEEEEEC
T ss_pred cccCCCCCEEEEEc
Confidence 58999999999985
No 234
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=64.13 E-value=3.5 Score=28.37 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=35.7
Q ss_pred EEEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
.+.+..+...-+..|.+++.+..+. . ....-++= +|+- ..+..-..|+-++|||+|.++.
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~gi----------~--~~~~rf~F-dG~~--l~~~~Tp~dl~medgD~Idv~~ 76 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQGL----------S--MRQIRFRF-DGQP--INETDTPAQLEMEDEDTIDVFQ 76 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTC----------C--STTEEEEE-TTEE--CCTTCCTTTTTCCTTEEEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCC----------C--cccEEEEE-CCEE--cCCCCCHHHcCCCCCCEEEEEE
Confidence 4566666677778899888877542 2 12222221 2321 1222344569999999999874
No 235
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=64.08 E-value=4.1 Score=27.27 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=36.8
Q ss_pred EEEeccccccHHHHHHHHHHhcccce--eeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEe
Q psy7063 114 VVVSCNMKLNLDYLLDIIWLYLSLIR--VYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 114 vpISA~~~~gld~L~~~I~~~L~~ir--VY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv 186 (188)
..+....+..+.+|++.+...-+..+ ++.. .|.. .+...++ .+|+.+..|+.|+|||.|.|+
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~-~g~l--~~~~~v~--------VN~~~v~~~~~l~~gDeV~i~ 83 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVGAHPALESRVFGD-DGEL--YDHINVL--------RNGEAAALGEATAAGDELALF 83 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHHHCGGGHHHHBCT-TSCB--CTTSEEE--------ETTEECCTTSBCCTTCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHCcHHHHHHhcc-CCcc--cccEEEE--------ECCEECCCCcccCCCCEEEEE
Confidence 34444456788899988877544332 3322 2322 1112222 245566779999999999986
No 236
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=64.03 E-value=4.3 Score=27.89 Aligned_cols=58 Identities=12% Similarity=0.046 Sum_probs=33.0
Q ss_pred ccccHHHHHHHHHHhcccc-eeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 120 MKLNLDYLLDIIWLYLSLI-RVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~~i-rVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
.+..+.+|++.+....+.. ...-+..|.. ...+.+-- +|+.|..++.|+|||.|.|+.
T Consensus 35 ~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~---~~~v~v~V-------Ng~~v~~~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 35 EGARVRDLIEEIKKRHEKFKEEVFGEGYDE---DADVNIAV-------NGRYVSWDEELKDGDVVGVFP 93 (98)
T ss_dssp TTCBHHHHHHHHHHHCGGGGGSCBCSSSCT---TSSBEEEE-------TTBCCCTTCBCCTTCEEEEES
T ss_pred CCCCHHHHHHHHHhHChhHHHHhhcccccc---CCcEEEEE-------CCEECCCCCCCCCCCEEEEEC
Confidence 4568888888876553211 1111233322 22222322 344566799999999999973
No 237
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=63.94 E-value=1.6 Score=28.83 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=17.0
Q ss_pred CCcccCCCccccCCCeEEEe
Q psy7063 167 SPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 167 ~~qrvg~d~~L~d~Dvv~iv 186 (188)
.|+-|..|+.|+|||.|+|+
T Consensus 52 Ng~~v~~~~~L~dGD~V~i~ 71 (77)
T 1rws_A 52 NGKVVLEDDEVKDGDFVEVI 71 (77)
T ss_dssp TTEEECSSSCCCSSCCCBCS
T ss_pred CCEECCCCCCcCCCCEEEEE
Confidence 55667788999999999986
No 238
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=63.62 E-value=4.7 Score=26.05 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=16.5
Q ss_pred CCcccCCCccccCCCeEEEee
Q psy7063 167 SPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 167 ~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
.|+-|.+|..|+|||.|+|+.
T Consensus 45 N~~~v~~~~~L~~gD~V~ii~ 65 (70)
T 1ryj_A 45 NGQIVIDEEEIFDGDIIEVIR 65 (70)
T ss_dssp TTEECCTTSBCCTTCEEEEEE
T ss_pred CCEECCCcccCCCCCEEEEEe
Confidence 444566777999999999974
No 239
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=62.32 E-value=3.5 Score=27.53 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=16.2
Q ss_pred CCcccCCC----ccccCCCeEEEee
Q psy7063 167 SPQRVGLA----HVMADEDVIQIVK 187 (188)
Q Consensus 167 ~~qrvg~d----~~L~d~Dvv~iv~ 187 (188)
.|+-|.++ +.|+|||.|+|++
T Consensus 40 Ng~iVpr~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 40 NGEVLEREAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp TTEECCTTHHHHCEECSSBCEEECC
T ss_pred CCEECChHHcCcccCCCCCEEEEEe
Confidence 44455564 8999999999985
No 240
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion protein; gitrl, glucocorticoid-induced TNF receptor ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP: b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Probab=61.75 E-value=5.1 Score=30.50 Aligned_cols=18 Identities=61% Similarity=0.746 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHhh
Q psy7063 2 GILEKISEIEKEIARTQK 19 (188)
Q Consensus 2 ~i~~~i~~~e~e~~~~~~ 19 (188)
.|+.+|.-||.|++|++|
T Consensus 18 ~~~~~~~~~~~~~~~~~~ 35 (166)
T 2r32_A 18 EILSKIYHIENEIARIKK 35 (166)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 378899999999999987
No 241
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=60.61 E-value=5.8 Score=28.45 Aligned_cols=19 Identities=58% Similarity=0.655 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q psy7063 2 GILEKISEIEKEIARTQKN 20 (188)
Q Consensus 2 ~i~~~i~~~e~e~~~~~~~ 20 (188)
.|++||+-||.|++|+++-
T Consensus 10 eilskiyhieneiar~~gl 28 (131)
T 1ebo_A 10 EILSKIYHIENEIARIKKL 28 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999873
No 242
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=60.09 E-value=5.9 Score=34.19 Aligned_cols=25 Identities=52% Similarity=0.686 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcc
Q psy7063 2 GILEKISEIEKEIARTQKNKVLAYC 26 (188)
Q Consensus 2 ~i~~~i~~~e~e~~~~~~~~~~~~~ 26 (188)
+|.|||++||+||++|||||+|++|
T Consensus 10 t~~eki~~ie~~~~~~~k~k~Te~~ 34 (376)
T 4a9a_A 10 TTVEKIKAIEDEMARTQKNKATSFH 34 (376)
T ss_dssp HHHHHHHHHHHHHHHSCCSTTTHHH
T ss_pred CHHHHHHHHHHHHHhcchhhhHHHH
Confidence 8999999999999999999999988
No 243
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=59.94 E-value=4.1 Score=25.80 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.4
Q ss_pred CCCccccCCCeEEEee
Q psy7063 172 GLAHVMADEDVIQIVK 187 (188)
Q Consensus 172 g~d~~L~d~Dvv~iv~ 187 (188)
..++.|+|||.|+|+.
T Consensus 44 ~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 44 VPDRPLRDGDVVEVVA 59 (64)
T ss_dssp CCCCCCCTTCEEEEEE
T ss_pred cCCcCCCCCCEEEEEe
Confidence 3558999999999974
No 244
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=59.63 E-value=4.5 Score=27.97 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=14.6
Q ss_pred CCCccccCCCeEEEee
Q psy7063 172 GLAHVMADEDVIQIVK 187 (188)
Q Consensus 172 g~d~~L~d~Dvv~iv~ 187 (188)
+.++.|+|||.|.|+.
T Consensus 79 ~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 79 GLETLLKDSDEIGILP 94 (99)
T ss_dssp STTSCCCTTEEEEEEC
T ss_pred CCCCCCCCCCEEEEEC
Confidence 8899999999999973
No 245
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=59.44 E-value=5.5 Score=27.41 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=37.1
Q ss_pred EEEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
.+.+..+...-+..|.+++.+..+. . . ..+-+--+|+- ..+.+--.||.++|||+|.++.
T Consensus 19 ~i~~~v~~~t~l~kl~~~y~~~~gi----------~--~-~~~rf~FdG~~--l~~~~Tp~dl~medgD~Idv~~ 78 (94)
T 2io1_B 19 VVQFKIKRHTPLSKLMKAYCERQGL----------S--M-RQIRFRFDGQP--INETDTPAQLEMEDEDTIDVFQ 78 (94)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTC----------C--G-GGEEEEETTEE--CCTTCCTTTTTCCTTCEEEEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHhCC----------C--c-ccEEEEECCEE--cCCCCCHHHcCCCCCCEEEEEE
Confidence 4566666677778899999887652 1 1 22222112331 2233455679999999999874
No 246
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=57.30 E-value=6 Score=27.07 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=12.6
Q ss_pred CccccCCCeEEEee
Q psy7063 174 AHVMADEDVIQIVK 187 (188)
Q Consensus 174 d~~L~d~Dvv~iv~ 187 (188)
++.|+|||.|+|+.
T Consensus 69 ~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 69 EVELCDRDVIEIVH 82 (87)
T ss_dssp TSBCCSSSEEEEEE
T ss_pred CcCCCCCCEEEEEc
Confidence 78999999999974
No 247
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=56.08 E-value=13 Score=30.05 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.6
Q ss_pred CcEEEEEecCCCCChHHH
Q psy7063 87 LPCIYAYNKIDQISIEEV 104 (188)
Q Consensus 87 kP~IlV~NKiDl~~~e~l 104 (188)
.++|+|+||+|..+.+++
T Consensus 141 ~~vI~Vi~K~D~lt~~e~ 158 (270)
T 3sop_A 141 VNIIPVIAKADTMTLEEK 158 (270)
T ss_dssp SEEEEEETTGGGSCHHHH
T ss_pred CcEEEEEeccccCCHHHH
Confidence 899999999999876654
No 248
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=55.80 E-value=3.6 Score=26.18 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=12.7
Q ss_pred CccccCCCeEEEee
Q psy7063 174 AHVMADEDVIQIVK 187 (188)
Q Consensus 174 d~~L~d~Dvv~iv~ 187 (188)
++.|+|||.|+|+.
T Consensus 48 ~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 48 QHIVQDGDQILLFQ 61 (66)
T ss_dssp TCCCCTTEEECEEE
T ss_pred CcCCCCCCEEEEEe
Confidence 78999999999974
No 249
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=55.55 E-value=7.3 Score=25.22 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=14.1
Q ss_pred cCCCccccCCCeEEEe
Q psy7063 171 VGLAHVMADEDVIQIV 186 (188)
Q Consensus 171 vg~d~~L~d~Dvv~iv 186 (188)
.+.|+.|+|||.|.|+
T Consensus 53 ~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 53 DNLNTPLKDGDVISLL 68 (74)
T ss_dssp CCTTCCCCTTCEEEEE
T ss_pred CCCCcCCCCCCEEEEE
Confidence 3689999999999986
No 250
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=55.52 E-value=5.4 Score=29.03 Aligned_cols=21 Identities=14% Similarity=-0.027 Sum_probs=18.6
Q ss_pred CCCCcccCCCccccCCCeEEE
Q psy7063 165 KYSPQRVGLAHVMADEDVIQI 185 (188)
Q Consensus 165 k~~~qrvg~d~~L~d~Dvv~i 185 (188)
-..|++|...+.|.+||+|.|
T Consensus 93 ~VNG~~V~~~~~L~~GD~I~l 113 (124)
T 3fm8_A 93 FVNGSSVSSPIQLHHGDRILW 113 (124)
T ss_dssp EETTEECCSCEEECTTCEEEE
T ss_pred EECCEEcCCcEECCCCCEEEE
Confidence 347999998899999999987
No 251
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=54.86 E-value=5.7 Score=25.66 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=36.4
Q ss_pred CEEEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEe
Q psy7063 112 NSVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 112 ~~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv 186 (188)
..+.+..+...-+..|.++..+..+. . ....-++=. |+- ..+..-..++-++|||+|.++
T Consensus 12 ~~v~~~v~~~t~l~kl~~~y~~~~gi----------~--~~~~rf~fd-G~~--l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 12 SVVQFKIKRHTPLSKLMKAYCERQGL----------S--MRQIRFRFD-GQP--INETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp CEEEEEECTTSCTHHHHHHHHHHHTC----------C--TTTCEEEET-TEE--CCTTCCTTTTTCCTTEEEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC----------C--cceEEEEEC-CEE--cCCCCCHHHcCCCCCCEEEEE
Confidence 35666667777788899998887652 1 111222212 321 123335567899999999875
No 252
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=54.61 E-value=6.6 Score=27.65 Aligned_cols=60 Identities=17% Similarity=0.097 Sum_probs=35.6
Q ss_pred EEEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
.+.+..+...-+..|.+++.+..++ .| ...-++= +|+- ..+-.--.++-++|||+|.++.
T Consensus 36 ~i~~kVk~~t~l~kL~~~y~ek~gi----------~~--~~~rf~F-dG~~--l~~~~Tp~dl~medgD~Idv~~ 95 (104)
T 1wz0_A 36 VVQFKIKRHTPLSKLMKAYCERQGL----------SM--RQIRFRF-DGQP--INETDTPAQLEMEDEDTIDVFQ 95 (104)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTC----------CT--TTSCEES-SSSB--CCTTSCTTTTTCCTTEEEEECC
T ss_pred EEEEEEcCCChHHHHHHHHHHHhCC----------Cc--ceEEEEE-CCEE--cCCCCCHHHcCCCCCCEEEEEE
Confidence 4566666667788899998887652 11 1111221 1321 1222344569999999999864
No 253
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=53.73 E-value=6.2 Score=26.10 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=34.6
Q ss_pred EEEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccC-----CCccccCCCeEEEee
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVG-----LAHVMADEDVIQIVK 187 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg-----~d~~L~d~Dvv~iv~ 187 (188)
.+.+..+...-+..|.++..+..+. . ...--++ |.|+|+. .++-++|||+|.+++
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi----------~--~~~~rf~--------fdG~~l~~~~Tp~~l~medgD~Idv~~ 79 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGL----------S--GHKLSFF--------FDGTKLSGKELPADLGLESGDLIEVWG 79 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTC----------T--TCCCEEE--------ETTEECCSCCCHHHHTCCTTCEEEEEC
T ss_pred EEEEEECCCChHHHHHHHHHHHhCC----------C--cccEEEE--------ECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 4666666667788899988887652 1 1111222 3344444 457899999998763
No 254
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=53.46 E-value=6.7 Score=26.82 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=35.4
Q ss_pred EEEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
.+.+..+...-+..|.+++.+..+. . . ..+-+--+|+- ..+..--.++-++|||+|.++.
T Consensus 29 ~i~~~v~~~t~l~kl~~~y~~~~gi----------~--~-~~~rf~fdG~~--l~~~~Tp~dl~medgD~Idv~~ 88 (93)
T 2d07_B 29 VVQFKIKRHTPLSKLMKAYCERQGL----------S--M-RQIRFRFDGQP--INETDTPAQLEMEDEDTIDVFQ 88 (93)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHTC----------C--G-GGEEEEETTEE--CCTTCCTTTTTCCTTEEEEEEE
T ss_pred EEEEEEccCCHHHHHHHHHHHHhCC----------C--c-cceEEEECCEE--cCCCCCHHHcCCCCCCEEEEEe
Confidence 4555555666778899988887652 1 1 12222112321 1222344579999999999874
No 255
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=53.36 E-value=6 Score=29.67 Aligned_cols=20 Identities=10% Similarity=0.198 Sum_probs=18.1
Q ss_pred CCCcccCCCccccCCCeEEE
Q psy7063 166 YSPQRVGLAHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~d~~L~d~Dvv~i 185 (188)
..|++|...+.|++||+|.|
T Consensus 114 VNG~~i~~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 114 VNGKKVTEPSILRSGNRIIM 133 (154)
T ss_dssp ETTEECCSCEECCTTCEEEE
T ss_pred ECCEEcCCceECCCCCEEEE
Confidence 47899988899999999987
No 256
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=52.78 E-value=8.9 Score=25.40 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=33.3
Q ss_pred cccHHHHHHHHHHhcccce---eeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 121 KLNLDYLLDIIWLYLSLIR---VYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 121 ~~gld~L~~~I~~~L~~ir---VY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
+..+.+|++.+....+-.+ ++ +..| . .+. +.+--+|+.+. ..=+.++.|+|||.|.|+.
T Consensus 24 ~~tv~~ll~~l~~~~p~~~~~~l~-~~~g-~--~~~-v~v~vN~~~v~---~~~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 24 ISKISELLERLKVEYGSEFTKQMY-DGNN-L--FKN-VIILVNGNNIT---SMKGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp CCBHHHHHHHHHHHSCHHHHHHHC-CSSC-S--TTT-CEEEESSSBGG---GTCSSSCBCCTTCEEEEEC
T ss_pred CCcHHHHHHHHHHHCcchhhhccc-cccC-c--Ccc-eEEEECCEEcc---ccCCCCcCCCCCCEEEEeC
Confidence 5678888888776532111 12 2333 2 222 23333344332 1136899999999999974
No 257
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=51.53 E-value=4.9 Score=26.87 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=20.9
Q ss_pred CCCCCcccCCCccccCCCeEEEee
Q psy7063 164 TKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 164 ~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
|+..|+-+.+++.|++++.|+|++
T Consensus 49 akvNg~l~dL~~~l~~d~~ve~vt 72 (88)
T 1wwt_A 49 AKVNNVVWDLDRPLEEDCTLELLK 72 (88)
T ss_dssp EEESSSEECSSSCCCSSEEEEECS
T ss_pred EEECCEEECCCcCcCCCCEEEEEe
Confidence 456788899999999999999985
No 258
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=51.36 E-value=7.6 Score=27.58 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=17.9
Q ss_pred CCCcccCCCccccCCCeEEE
Q psy7063 166 YSPQRVGLAHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~d~~L~d~Dvv~i 185 (188)
..|+||..-+.|++||+|.|
T Consensus 84 vNg~~i~~~~~L~~GD~I~i 103 (120)
T 1wln_A 84 VDGQRISETTMLQSGMRLQF 103 (120)
T ss_dssp ETSCBCSSCEEECTTCEEEE
T ss_pred ECCEEcCCCEECCCCCEEEE
Confidence 47899998889999999987
No 259
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=51.19 E-value=6.9 Score=28.50 Aligned_cols=30 Identities=17% Similarity=0.167 Sum_probs=20.8
Q ss_pred cEEeccC---CCCCCCCCcccCCC--ccccCCCeEEE
Q psy7063 154 GLILRKG---GTSTKYSPQRVGLA--HVMADEDVIQI 185 (188)
Q Consensus 154 p~il~~g---g~~~k~~~qrvg~d--~~L~d~Dvv~i 185 (188)
.+|..-| |+- ..|+||... +.|++||+|+|
T Consensus 85 ~~l~Dl~StNGT~--vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 85 FYLYDLGSTHGTF--LNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp EEEEECSCSSCEE--ETTEECCTTCCEECCTTCEEEE
T ss_pred ceEeeCCCCCceE--ECCEECCCCceeECCCCCEEEE
Confidence 4444434 543 368899664 68999999987
No 260
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=49.86 E-value=6.2 Score=27.35 Aligned_cols=20 Identities=5% Similarity=0.272 Sum_probs=17.7
Q ss_pred CCCcccCCCccccCCCeEEE
Q psy7063 166 YSPQRVGLAHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~d~~L~d~Dvv~i 185 (188)
..|+++...+.|++||+|+|
T Consensus 73 vng~~i~~~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 73 VEGRKIEHQSTLSANQVVAL 92 (106)
T ss_dssp ETTEECSSEEECCTTCCEEE
T ss_pred ECCEECCCCeECCCCCEEEE
Confidence 47889998889999999987
No 261
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=49.31 E-value=9.9 Score=26.62 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=17.7
Q ss_pred CCCcccCC--CccccCCCeEEEe
Q psy7063 166 YSPQRVGL--AHVMADEDVIQIV 186 (188)
Q Consensus 166 ~~~qrvg~--d~~L~d~Dvv~iv 186 (188)
..|++++. .+.|.+||+|.|-
T Consensus 72 vng~~l~~~~~~~L~~GD~i~~G 94 (116)
T 1lgp_A 72 INKLKVVKKQTCPLQTGDVIYLV 94 (116)
T ss_dssp CCCCCCCCSSCCCCCTTCEEEEE
T ss_pred ECCEEcCCCCcEECCCCCEEEEe
Confidence 46888886 5999999999984
No 262
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=46.16 E-value=5.8 Score=28.87 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.6
Q ss_pred CCCcccCCCccccCCCeEEE
Q psy7063 166 YSPQRVGLAHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~d~~L~d~Dvv~i 185 (188)
..|+||+. +.|.+||+|+|
T Consensus 86 vNg~~i~~-~~L~~GD~I~i 104 (131)
T 3hx1_A 86 INGKKVQE-HIIQTGDEIVM 104 (131)
T ss_dssp ETTEEESE-EECCTTCEEEC
T ss_pred ECCEEeEe-EECCCCCEEEE
Confidence 36889987 99999999987
No 263
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=45.72 E-value=16 Score=32.19 Aligned_cols=63 Identities=10% Similarity=-0.011 Sum_probs=32.4
Q ss_pred eeeEEE-EecCCch-HHHHHHHh-cCCCCcEEEEEecCCCCChH-H-HHHHhcC-CCEEEEeccccccHHH
Q psy7063 62 LKNVLF-REDCNAD-ELIDVINA-NRVYLPCIYAYNKIDQISIE-E-VDRIARQ-PNSVVVSCNMKLNLDY 126 (188)
Q Consensus 62 ~ADvvl-~~D~s~d-d~~~~l~~-~~~~kP~IlV~NKiDl~~~e-~-l~~l~~~-~~~vpISA~~~~gld~ 126 (188)
.+|.++ ++|++.. +..++... ...-.+..+|+||+|..... . +...... .++.++| +|+++++
T Consensus 212 ~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig--~Ge~vdd 280 (443)
T 3dm5_A 212 HPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIG--TGEKIDD 280 (443)
T ss_dssp CCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEE--CSSSTTC
T ss_pred cCceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEEECCCCcccccHHHHHHHHHCCCEEEEE--cCCChHH
Confidence 345554 7776532 22222221 11235678999999987543 2 2222222 2355666 4777744
No 264
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=45.02 E-value=14 Score=26.91 Aligned_cols=18 Identities=61% Similarity=0.746 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHhh
Q psy7063 2 GILEKISEIEKEIARTQK 19 (188)
Q Consensus 2 ~i~~~i~~~e~e~~~~~~ 19 (188)
.++.||+-+|.|++|++|
T Consensus 25 ~~~~~~~~~~~~~~~~~~ 42 (125)
T 4g2k_A 25 EILSKIYHIENEIARIKK 42 (125)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 368899999999999998
No 265
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=42.60 E-value=11 Score=26.38 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=33.3
Q ss_pred EEEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCC-----ccccCCCeEEEe
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLA-----HVMADEDVIQIV 186 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d-----~~L~d~Dvv~iv 186 (188)
.+...-+...-++.|.++..+..+ -. ...-..+ |.|+||..+ -.++|||+|..+
T Consensus 32 ev~FkIK~tt~l~KL~~aYc~r~g----------v~--~~sirFl--------fDG~rI~~~~TP~~L~meD~DiID~~ 90 (95)
T 2l76_A 32 LVRLPLRMSEPLQSVVDHMATHLG----------VS--PSRILLL--------FGETELSPTATPRTLKLGVADIIDCV 90 (95)
T ss_dssp EEEEEECSSSCTHHHHHHHHHHHT----------SC--GGGEEEE--------ETTEECCTTSCHHHHTCCSSCEEEEE
T ss_pred EEEEEEecCChHHHHHHHHHhhcC----------CC--hhhEEEE--------ECCcCCCCCCCHhHcCCCCCCEEEEE
Confidence 455555666677888888776654 22 2222233 455555555 368999999875
No 266
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=42.31 E-value=11 Score=25.81 Aligned_cols=61 Identities=15% Similarity=0.100 Sum_probs=34.3
Q ss_pred ccccHHHHHHHHHHhccc--cee--eeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 120 MKLNLDYLLDIIWLYLSL--IRV--YTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~~--irV--Y~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
.+..+.+|++.+.+..+- -++ +. ..|.. .+...++ -+|++++|- -|.|+.|+|||.|.|+.
T Consensus 30 ~~~Tv~~L~~~L~~~~~~~~~~l~~~~-~~~~l--r~~~~v~-VN~~~~~~~---~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 30 DPVTVGDLIDHIVSTMINNPNDVSIFI-EDDSI--RPGIITL-INDTDWELE---GEKDYILEDGDIISFTS 94 (99)
T ss_dssp SCCBHHHHHHHHHHHTCSSGGGHHHHE-ETTEE--CTTEEEE-ETTEEGGGG---TGGGCBCCTTCEEEEEE
T ss_pred CCCcHHHHHHHHHHHCchhhHHHhhhc-cCCcc--ccCeEEE-ECCEEcccc---CCCCcCcCCCCEEEEEC
Confidence 567888899988876431 112 22 11222 2222222 224444321 37899999999998863
No 267
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=42.16 E-value=11 Score=25.37 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=34.2
Q ss_pred ccccHHHHHHHHHHhcccce--eeeCC-CCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEe
Q psy7063 120 MKLNLDYLLDIIWLYLSLIR--VYTKK-PGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~~ir--VY~k~-~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv 186 (188)
.+..+.+|++.+....+..+ ++... .|.. ...+.+--+|+.+.+. =|.++.|+|||.|.|+
T Consensus 24 ~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~---~~~~~v~VN~~~v~~~---~~~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 24 SGDTLGAVISDLEANYSGISERLMDPSSPGKL---HRFVNIYVNDEDVRFS---GGLATAIADGDSVTIL 87 (93)
T ss_dssp CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSB---CTTEEEEETTEEGGGT---TGGGCBCCTTCEEEEE
T ss_pred CCCCHHHHHHHHHHHChhHHHHHhccccCCcc---cCCEEEEECCEEccCc---CCCCcCCCCCCEEEEE
Confidence 45678888888876543221 11110 2332 2223333344444321 2579999999999986
No 268
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=40.94 E-value=8.5 Score=27.57 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=17.7
Q ss_pred CCCcccCCCccccCCCeEEE
Q psy7063 166 YSPQRVGLAHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~d~~L~d~Dvv~i 185 (188)
..|+++...+.|.+||+|+|
T Consensus 79 vNg~~i~~~~~L~~Gd~i~i 98 (128)
T 1r21_A 79 VNGSVIDEPVRLKHGDVITI 98 (128)
T ss_dssp ETTEECSSCEECCTTEEEEC
T ss_pred ECCEECCCcEEcCCCCEEEE
Confidence 47889998899999999987
No 269
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=40.77 E-value=14 Score=26.14 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=33.7
Q ss_pred EEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 114 VVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 114 vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
+.+..+...-+..|.+++.+..++ . .. .+-+--+|+- ..+..--.++-++|||+|.++.
T Consensus 43 i~fkIk~tt~l~kL~~ay~ek~gi----------~--~~-~~rF~FdG~r--l~~~~Tp~dl~medgD~Idv~~ 101 (106)
T 2eke_C 43 IFFKIKKTTPLRRLMEAFAKRQGK----------E--MD-SLRFLYDGIR--IQADQTPEDLDMEDNDIIEAHR 101 (106)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTC----------C--GG-GEEEEETTEE--CCTTCCTTTTTCCTTEEEEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHhCC----------C--cc-cEEEEECCeE--cCCCCCHHHcCCCCCCEEEEEe
Confidence 444444555568888888877642 1 11 2222112331 2233455678999999999874
No 270
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=38.91 E-value=27 Score=21.41 Aligned_cols=22 Identities=36% Similarity=0.373 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhc
Q psy7063 4 LEKISEIEKEIARTQKNKVLAY 25 (188)
Q Consensus 4 ~~~i~~~e~e~~~~~~~~~~~~ 25 (188)
++-|--||.||.+.|+.|.-+-
T Consensus 5 ~EEILRLErEIE~Lqrqke~~~ 26 (51)
T 2lw9_A 5 VEEILRLEKEIEDLQRMKEQQE 26 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999887553
No 271
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=38.62 E-value=10 Score=28.03 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=17.4
Q ss_pred CCCcccC--CCccccCCCeEEEe
Q psy7063 166 YSPQRVG--LAHVMADEDVIQIV 186 (188)
Q Consensus 166 ~~~qrvg--~d~~L~d~Dvv~iv 186 (188)
..|+||+ ..+.|.+||+|.|-
T Consensus 107 VNg~~i~~~~~~~L~~GD~I~lG 129 (149)
T 1gxc_A 107 VNTELVGKGKRRPLNNNSEIALS 129 (149)
T ss_dssp ETTEECCTTCEEECCTTEEEEES
T ss_pred ECCEECCCCCeEECCCCCEEEEC
Confidence 3688888 47999999999873
No 272
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=38.36 E-value=19 Score=20.99 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q psy7063 3 ILEKISEIEKEIA 15 (188)
Q Consensus 3 i~~~i~~~e~e~~ 15 (188)
.+++|.+||++|.
T Consensus 6 ~~d~I~aiEQqiy 18 (40)
T 1gp8_A 6 SAANKDAIRKQMD 18 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 5789999999984
No 273
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=38.20 E-value=17 Score=23.87 Aligned_cols=20 Identities=10% Similarity=0.219 Sum_probs=14.6
Q ss_pred CCcccCCCccccCCCeEEEee
Q psy7063 167 SPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 167 ~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
+|+-|.+|..++ ||.|+|++
T Consensus 42 NG~~v~~d~~l~-GD~VeIv~ 61 (74)
T 2l32_A 42 DGRPVPEDQSVE-VDRVKVLR 61 (74)
T ss_dssp CCCCCCTTSSSC-CCCEEECS
T ss_pred CCEECCHHHCCC-CCEEEEEE
Confidence 445567777775 99999974
No 274
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=38.14 E-value=8.2 Score=29.00 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.5
Q ss_pred CCCcccCC--CccccCCCeEEE
Q psy7063 166 YSPQRVGL--AHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~--d~~L~d~Dvv~i 185 (188)
..|+||+. .+.|.+||+|+|
T Consensus 87 VNg~ri~~~~~~~L~~GD~I~l 108 (158)
T 1dmz_A 87 LNNNRMIQGTKFLLQDGDEIKI 108 (158)
T ss_dssp ETTEECCSSEEEECCSSCCEES
T ss_pred ECCEEcCCCceEEcCCCCEEEE
Confidence 36899988 599999999997
No 275
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=37.74 E-value=19 Score=25.89 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=34.7
Q ss_pred EEEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
.+.+..+...-+..|.++..+..++ . ...--.+-. |. +..+..-..+..++|||+|.++.
T Consensus 52 ev~fkIk~tt~L~KLm~aY~er~Gl----------~--~~~irFlFD-G~--rI~~~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 52 EIHFKVKMTTHLKKLKESYCQRQGV----------P--MNSLRFLFE-GQ--RIADNHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTC----------C--TTSEEEEET-TE--ECCTTCCTTTTTCCTTCEEEEEE
T ss_pred EEEEEEccCChHHHHHHHHHHHhCC----------C--hhhEEEEEC-Ce--ECCCCCCHHHcCCCCCCEEEEEe
Confidence 3455555666678899988888652 1 121112211 22 11223344678899999999864
No 276
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=37.27 E-value=9.9 Score=29.38 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.7
Q ss_pred CCCcccCC--CccccCCCeEEE
Q psy7063 166 YSPQRVGL--AHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~--d~~L~d~Dvv~i 185 (188)
..|+||+. .+.|.+||+|.|
T Consensus 111 VNg~ri~~~~~~~L~~GD~I~l 132 (182)
T 1qu5_A 111 LNNNRMIQGTKFLLQDGDEIKI 132 (182)
T ss_dssp ETTEECCSSEEEECCTTBCCEE
T ss_pred ECCEEcCCCcceEcCCCCEEEE
Confidence 36899988 599999999998
No 277
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=37.01 E-value=13 Score=27.50 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=17.2
Q ss_pred CCCcccCC-CccccCCCeEEE
Q psy7063 166 YSPQRVGL-AHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~-d~~L~d~Dvv~i 185 (188)
..|++|+. .+.|.+||+|.|
T Consensus 91 VNg~~i~~~~~~L~~GD~I~l 111 (151)
T 2jqj_A 91 INGNRLVKKDYILKNGDRIVF 111 (151)
T ss_dssp ETTEECCSSCEEECSSEEEEE
T ss_pred ECCEEcCCCceECCCCCEEEE
Confidence 36889988 599999999987
No 278
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=36.65 E-value=13 Score=25.21 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=16.1
Q ss_pred CCCcccCCCccccCCCeEEE
Q psy7063 166 YSPQRVGLAHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~d~~L~d~Dvv~i 185 (188)
..|+++. .+.|++||+|+|
T Consensus 69 vng~~i~-~~~L~~gd~i~i 87 (100)
T 3po8_A 69 VNNAPVQ-EWQLADGDVIRL 87 (100)
T ss_dssp ETTEECS-EEECCTTCEEEE
T ss_pred ECCEECc-eEECCCCCEEEE
Confidence 3678887 699999999987
No 279
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=36.28 E-value=16 Score=26.05 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=17.3
Q ss_pred CCCcccCC--CccccCCCeEEEe
Q psy7063 166 YSPQRVGL--AHVMADEDVIQIV 186 (188)
Q Consensus 166 ~~~qrvg~--d~~L~d~Dvv~iv 186 (188)
..|++++. .+.|.+||+|+|-
T Consensus 83 vNg~~l~~~~~~~L~~Gd~I~lG 105 (127)
T 1g6g_A 83 LNGQKVEKNSNQLLSQGDEITVG 105 (127)
T ss_dssp ETTEECCTTCCEECCTTCEEEEC
T ss_pred ECCEEcCCCCeEEcCCCCEEEEC
Confidence 36788887 5999999999873
No 280
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=36.21 E-value=14 Score=26.27 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=34.3
Q ss_pred EEEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccC-----CCccccCCCeEEEee
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVG-----LAHVMADEDVIQIVK 187 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg-----~d~~L~d~Dvv~iv~ 187 (188)
.+.+..+...-+..|.+++.+..++ . ....-++ |.|+|+. .|+-++|||+|.++.
T Consensus 38 ~i~fkVk~~t~l~kL~~ay~ek~gi----------~--~~~~rfi--------FdG~~L~~~~Tp~dl~mEDgD~Idv~~ 97 (110)
T 2k8h_A 38 EMFFRIKSRTALKKLIDTYCKKQGI----------S--RNSVRFL--------FDGTPIDETKTPEELGMEDDDVIDAMV 97 (110)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHTC----------C--SSSCEEE--------SSSCBCCSSSHHHHHHCSSEEEEEEEC
T ss_pred EEEEEECCCChHHHHHHHHHHHhCC----------C--cccEEEE--------ECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 3555556666778898888887542 2 1111222 3444444 458899999999874
No 281
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=36.16 E-value=16 Score=26.50 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=17.5
Q ss_pred CCCcccCC--CccccCCCeEEEe
Q psy7063 166 YSPQRVGL--AHVMADEDVIQIV 186 (188)
Q Consensus 166 ~~~qrvg~--d~~L~d~Dvv~iv 186 (188)
..|+|+.. .+.|.+||+|.|=
T Consensus 79 vNg~~l~~~~~~~L~~GD~I~lG 101 (138)
T 2pie_A 79 LNRARLEPLRVYSIHQGDYIQLG 101 (138)
T ss_dssp ETTEECCTTCCEECCTTCEEEES
T ss_pred ECCEEcCCCCcEECCCCCEEEEC
Confidence 36788887 6999999999983
No 282
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=36.08 E-value=13 Score=26.09 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=16.8
Q ss_pred CCCcccCC--CccccCCCeEEE
Q psy7063 166 YSPQRVGL--AHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~--d~~L~d~Dvv~i 185 (188)
..|+|+.. .+.|.+||+|+|
T Consensus 80 vng~~l~~~~~~~L~~gd~i~l 101 (118)
T 1uht_A 80 LNSNALDPETSVNLGDGDVIKL 101 (118)
T ss_dssp ESSSBCCTTCEEECCTTEEEEE
T ss_pred ECCEECCCCCeEEcCCCCEEEE
Confidence 36788876 689999999987
No 283
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=35.57 E-value=16 Score=26.82 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=17.2
Q ss_pred CCCcccCC--CccccCCCeEEEe
Q psy7063 166 YSPQRVGL--AHVMADEDVIQIV 186 (188)
Q Consensus 166 ~~~qrvg~--d~~L~d~Dvv~iv 186 (188)
..|+|+.. .+.|.+||+|+|=
T Consensus 87 vNg~~i~~~~~~~L~~GD~I~iG 109 (145)
T 2csw_A 87 LNRARLEPLRVYSIHQGDYIQLG 109 (145)
T ss_dssp ESSCBCCBTCCEECCSSCCEEES
T ss_pred ECCEECCCCccEECCCCCEEEEC
Confidence 36788877 5999999999983
No 284
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=35.55 E-value=15 Score=25.62 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=32.0
Q ss_pred EEEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCC-----CccccCCCeEEEee
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGL-----AHVMADEDVIQIVK 187 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~-----d~~L~d~Dvv~iv~ 187 (188)
.+.+..+...-+..|.++..+..++ . ....-.+ |.|+||.. +..++|||+|.+.+
T Consensus 38 ~v~fkIk~~t~l~kLm~aY~~~~g~----------~--~~~vrF~--------FDG~rI~~~~TP~dLdMEDgD~IDv~~ 97 (97)
T 2jxx_A 38 TLEVSLSRDSPLKTLMSHYEEAMGL----------S--GRKLSFF--------FDGTKLSGRELPADLGMESGDLIEVWG 97 (97)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTTC----------S--SSCCEEE--------ETTEECCSCSCHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCChHHHHHHHHHHHHCC----------C--cccEEEE--------ECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 3444545555667788877776542 1 1111122 44555544 46789999998753
No 285
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=34.86 E-value=36 Score=19.04 Aligned_cols=17 Identities=41% Similarity=0.356 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy7063 3 ILEKISEIEKEIARTQK 19 (188)
Q Consensus 3 i~~~i~~~e~e~~~~~~ 19 (188)
...+.+++|.|.+|.++
T Consensus 12 ll~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 12 NTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 45688899999998875
No 286
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=33.49 E-value=18 Score=27.14 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=17.1
Q ss_pred CCCcccCCC--ccccCCCeEEE
Q psy7063 166 YSPQRVGLA--HVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~d--~~L~d~Dvv~i 185 (188)
..|++|... +.|.+||+|.|
T Consensus 111 vNg~~i~~~~~~~L~~GD~I~i 132 (164)
T 1g3g_A 111 LNGQKVEKNSNQLLSQGDEITV 132 (164)
T ss_dssp ETTEEECTTEEEECCTTCEEEE
T ss_pred ECCEEcCCCCceEcCCCCEEEE
Confidence 367889874 99999999988
No 287
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=33.14 E-value=17 Score=24.56 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=31.4
Q ss_pred ccccHHHHHHHHHHhcccceeeeCCCCCC-CCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEE
Q psy7063 120 MKLNLDYLLDIIWLYLSLIRVYTKKPGAP-PDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQI 185 (188)
Q Consensus 120 ~~~gld~L~~~I~~~L~~irVY~k~~g~~-~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~i 185 (188)
...-+.+|.+.+++.+++- ++...|.. --..++.+| +|-+.=.||.+.|||+++|
T Consensus 25 ~~~tvK~Li~~l~ea~~l~--~~~~~~~~irv~NK~~~L---------~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 25 DYHPVKKVIDIAWQAQSVS--MPPREGHWIRVVNKDKVF---------SGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTSBTTHHHHHHHHHSCCC--SCCCTTCEEEEGGGTEEE---------ETTSBTGGGTCCTTCEEEE
T ss_pred CchhHHHHHHHHHHHhCCC--cCCCCCCEEEEecCCEEE---------cCCCEEeeCCcCCCCEEEE
Confidence 3455678999999998865 12222111 001122222 2222233999999999998
No 288
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=32.78 E-value=27 Score=20.61 Aligned_cols=16 Identities=44% Similarity=0.565 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhh
Q psy7063 5 EKISEIEKEIARTQKN 20 (188)
Q Consensus 5 ~~i~~~e~e~~~~~~~ 20 (188)
+-|+++|+||+...|.
T Consensus 31 dliaylekeianlrkk 46 (49)
T 3he5_A 31 DLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4589999999988764
No 289
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=32.18 E-value=22 Score=25.85 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=15.4
Q ss_pred CCccc----CCCccccCCCeEEE
Q psy7063 167 SPQRV----GLAHVMADEDVIQI 185 (188)
Q Consensus 167 ~~qrv----g~d~~L~d~Dvv~i 185 (188)
.|+++ +..+.|.+||+|+|
T Consensus 94 Ng~~i~l~~~~~~~L~~GD~I~l 116 (132)
T 3va4_A 94 VKPPRVLPPGVSHRLRDQELILF 116 (132)
T ss_dssp TTTTEEECTTCCEECCTTCEEEE
T ss_pred CCEEcccCCCCEEECCCCCEEEE
Confidence 56665 56789999999987
No 290
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=31.16 E-value=14 Score=26.97 Aligned_cols=20 Identities=5% Similarity=0.127 Sum_probs=16.8
Q ss_pred CCCcccC--CCccccCCCeEEE
Q psy7063 166 YSPQRVG--LAHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg--~d~~L~d~Dvv~i 185 (188)
..|+|+. ..+.|.+||+|+|
T Consensus 104 vNg~~l~~~~~~~L~~gd~i~~ 125 (140)
T 2jpe_A 104 LGHIRLEPHKPQQIPIDSTVSF 125 (140)
T ss_dssp SSSCEECSSSCCEECTTCCBBC
T ss_pred ECCEECCCCccEECCCCCEEEE
Confidence 3678888 6799999999986
No 291
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=29.51 E-value=17 Score=28.90 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=16.8
Q ss_pred CCCcccCCC--ccccCCCeEEE
Q psy7063 166 YSPQRVGLA--HVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~d--~~L~d~Dvv~i 185 (188)
..|+||... +.|.+||+|+|
T Consensus 168 VNG~rI~~~~~~~L~~GD~I~f 189 (205)
T 3elv_A 168 LNNVVIPGARYIELRSGDVLTL 189 (205)
T ss_dssp ETTEECCBTSCEECCTTCEEES
T ss_pred ECCEECCCCceeECCCCCEEEE
Confidence 368999876 68999999986
No 292
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=28.97 E-value=21 Score=24.94 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=16.1
Q ss_pred CCCcccCCCccccCCCeEEE
Q psy7063 166 YSPQRVGLAHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~d~~L~d~Dvv~i 185 (188)
..|+++. .+.|.+||+|+|
T Consensus 77 vng~~i~-~~~L~~gd~i~i 95 (115)
T 2xt9_B 77 VNREPVD-SAVLANGDEVQI 95 (115)
T ss_dssp ETTEECS-EEEECTTCEEEE
T ss_pred ECCEEcc-eEECCCCCEEEE
Confidence 3678888 699999999987
No 293
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=28.94 E-value=27 Score=23.28 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=19.3
Q ss_pred CCCCCcccCCCccccCCCeEEEe
Q psy7063 164 TKYSPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 164 ~k~~~qrvg~d~~L~d~Dvv~iv 186 (188)
++.+|+.+..++.|..||+|+|.
T Consensus 28 V~VNg~~~~~~~~v~~gd~I~v~ 50 (92)
T 2k6p_A 28 VWLNGSCAKASKEVKAGDTISLH 50 (92)
T ss_dssp CEETTEECCTTCBCCTTCEEEEC
T ss_pred EEECCEEcCCCCCcCCCCEEEEE
Confidence 55678888889999999999874
No 294
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=28.38 E-value=19 Score=26.61 Aligned_cols=19 Identities=37% Similarity=0.386 Sum_probs=16.4
Q ss_pred CCCcccCCCccccCCCeEEE
Q psy7063 166 YSPQRVGLAHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~d~~L~d~Dvv~i 185 (188)
..|+||. .+.|.+||+|+|
T Consensus 112 VNg~~i~-~~~L~~GD~I~i 130 (143)
T 2kb3_A 112 VNREPRN-AQVMQTGDEIQI 130 (143)
T ss_dssp ETTEECS-EEECCTTEEEEE
T ss_pred ECCEEcc-eEECCCCCEEEE
Confidence 4688888 699999999987
No 295
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=28.11 E-value=18 Score=26.27 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=16.3
Q ss_pred CCCcccCC----------CccccCCCeEEE
Q psy7063 166 YSPQRVGL----------AHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~----------d~~L~d~Dvv~i 185 (188)
..|+++.. .+.|.+||+|+|
T Consensus 80 vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 80 VNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp ETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred ECCEECcCcccccccCCceEECCCCCEEEE
Confidence 36777764 799999999987
No 296
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=27.70 E-value=27 Score=26.54 Aligned_cols=16 Identities=13% Similarity=0.370 Sum_probs=13.7
Q ss_pred CCCccccCCCeEEEee
Q psy7063 172 GLAHVMADEDVIQIVK 187 (188)
Q Consensus 172 g~d~~L~d~Dvv~iv~ 187 (188)
+.++.|+|||.|.|+.
T Consensus 67 ~~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 67 GLSTPLSPGATLDLFP 82 (168)
T ss_dssp GGGCBCCTTCEEEEEC
T ss_pred CCccCCCCCCEEEEEC
Confidence 4599999999999973
No 297
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=27.05 E-value=22 Score=25.37 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=15.1
Q ss_pred CCCcccCC--CccccCCCeEEEe
Q psy7063 166 YSPQRVGL--AHVMADEDVIQIV 186 (188)
Q Consensus 166 ~~~qrvg~--d~~L~d~Dvv~iv 186 (188)
+.|+++++ .+.|++||+++|+
T Consensus 74 vng~~l~k~~~~~L~~GD~leLl 96 (110)
T 2brf_A 74 TGTQELKPGLEGSLGVGDTLYLV 96 (110)
T ss_dssp EC-CBCCTTCEEEEETTCEEEEE
T ss_pred ECCEEcCCCCEEEecCCCEEEEc
Confidence 34555554 4889999999986
No 298
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=26.66 E-value=18 Score=27.21 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=16.6
Q ss_pred CCCcccCC--CccccCCCeEEE
Q psy7063 166 YSPQRVGL--AHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~--d~~L~d~Dvv~i 185 (188)
..|+|+.. -+.|++||+|+|
T Consensus 121 VNg~ri~~~~~~~L~~GD~I~~ 142 (158)
T 3els_A 121 LNNVVIPGARYIELRSGDVLTL 142 (158)
T ss_dssp ETTEECCTTCCEECCTTEEEES
T ss_pred ECCEEcCCCceEEcCCCCEEEE
Confidence 36888877 588999999986
No 299
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.58 E-value=51 Score=22.92 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcc
Q psy7063 2 GILEKISEIEKEIARTQKNKVLAYC 26 (188)
Q Consensus 2 ~i~~~i~~~e~e~~~~~~~~~~~~~ 26 (188)
.|..+|.+|++||.+-++.|.-.-+
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~K 43 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKK 43 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999998888765544
No 300
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=25.43 E-value=26 Score=29.74 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=17.9
Q ss_pred CCCcccCCCccccCCCeEEE
Q psy7063 166 YSPQRVGLAHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~d~~L~d~Dvv~i 185 (188)
.+|++|+..+.|.+||+|+|
T Consensus 352 vng~~i~~~~~L~~gd~i~~ 371 (388)
T 2ff4_A 352 VQHERIRSAVTLNDGDHIRI 371 (388)
T ss_dssp ETTEECSSEEEECTTCEEEE
T ss_pred ECCEECCCceECCCCCEEEE
Confidence 46899988999999999987
No 301
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=23.57 E-value=33 Score=27.25 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=32.9
Q ss_pred EEEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCC-cEEeccCCCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDD-GLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~-p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
.+.+..+...-+..|+++..+..++ . ... -|+. +|. +..+..-..++.++|||+|..+.
T Consensus 68 eV~FKIKrtTpL~KLmeAYcERqGL----------~--~~sIRFLF--DGq--RI~~ddTPeDLdMEDGDtIDV~l 127 (207)
T 3tix_A 68 EIFFKIKKTTPLRRLMEAFAKRQGK----------E--MDSLTFLY--DGI--EIQADQTPEDLDMEDNDIIEAHR 127 (207)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTC----------C--GGGSCEEE--TTE--ECCSSCCTTTTTCCTTEEEEECC
T ss_pred EEEEEEccCChHHHHHHHHHHHhCC----------C--cccEEEEE--CCe--ecCCCCCHHHcCCCCCCEEEEEE
Confidence 4445555566678888888776542 1 111 1211 122 11222334678899999998863
No 302
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=23.24 E-value=32 Score=24.99 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=19.4
Q ss_pred CCCCCCcccCCCccccCCCeEEEe
Q psy7063 163 STKYSPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 163 ~~k~~~qrvg~d~~L~d~Dvv~iv 186 (188)
.+..+|+.+..++.|..||+|+|.
T Consensus 35 ~V~VNG~~vk~s~~V~~GD~I~I~ 58 (133)
T 1dm9_A 35 KVHYNGQRSKPSKIVELNATLTLR 58 (133)
T ss_dssp CEEETTEECCTTCBCCTTCEEEEE
T ss_pred cEEECCEEcCCCCEeCCCCEEEEE
Confidence 345678888889999999999884
No 303
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=22.84 E-value=33 Score=25.90 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=16.1
Q ss_pred CCCcccCCCccccCCCeEEE
Q psy7063 166 YSPQRVGLAHVMADEDVIQI 185 (188)
Q Consensus 166 ~~~qrvg~d~~L~d~Dvv~i 185 (188)
..|+||. .+.|++||+|+|
T Consensus 121 VNg~~i~-~~~L~~GD~I~i 139 (162)
T 2kfu_A 121 VNREPVD-SAVLANGDEVQI 139 (162)
T ss_dssp ETTBCCS-EEECCSSCEEEE
T ss_pred ECCEEcc-eEECCCCCEEEE
Confidence 3678888 599999999987
No 304
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=22.79 E-value=39 Score=26.54 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=34.5
Q ss_pred EEEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEee
Q psy7063 113 SVVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIVK 187 (188)
Q Consensus 113 ~vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv~ 187 (188)
.+.+.-+...-+..|+++..+..++ . . ..+-+-=+|+ +..+..-..++.++|||+|..+.
T Consensus 40 ~v~fkIk~~t~l~kL~~ay~er~Gi----------~--~-~~~RF~FdG~--rI~~~~TP~dL~MEdgD~Idv~~ 99 (200)
T 3pge_A 40 EIFFKIKKTTPLRRLMEAFAKRQGK----------E--M-DSLRFLYDGI--RIQADQTPEDLDMEDNDIIEAHR 99 (200)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHSS----------C--G-GGEEEEETTE--ECCTTCCTTTTTCCTTEEEEEEE
T ss_pred EEEEEEecCCHHHHHHHHHHHHhCC----------C--h-hhEEEEECCE--EcCCCCCHHHcCCCCCCEEEEEe
Confidence 4555555666678899988887653 1 1 1222211122 11222344678899999998863
No 305
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=22.10 E-value=64 Score=21.24 Aligned_cols=14 Identities=7% Similarity=0.342 Sum_probs=11.3
Q ss_pred CccccCCCeEEEee
Q psy7063 174 AHVMADEDVIQIVK 187 (188)
Q Consensus 174 d~~L~d~Dvv~iv~ 187 (188)
.-.|+.||+|+++.
T Consensus 23 ei~lk~Gd~VeVl~ 36 (71)
T 1v1c_A 23 AITLREGQYVEVLD 36 (71)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred eeeecCCCEEEEEE
Confidence 34589999999985
No 306
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=21.98 E-value=68 Score=23.88 Aligned_cols=38 Identities=3% Similarity=-0.070 Sum_probs=23.0
Q ss_pred ccceeeEEE-EecCCchH---HHHHHHhcCCCCcEEEEEecC
Q psy7063 59 KLTLKNVLF-REDCNADE---LIDVINANRVYLPCIYAYNKI 96 (188)
Q Consensus 59 ~i~~ADvvl-~~D~s~dd---~~~~l~~~~~~kP~IlV~NKi 96 (188)
.|.+||+++ +.|.+..| ..+.=......||++.+..+-
T Consensus 75 ~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A~gkPVv~~~~~~ 116 (157)
T 1f8y_A 75 GIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIPDE 116 (157)
T ss_dssp HHHTSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEEEECGG
T ss_pred HHHhCCEEEEEcCCCCCCccHHHHHHHHHHCCCeEEEEEcCC
Confidence 489999998 77643222 222212233579998887553
No 307
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=21.87 E-value=82 Score=16.19 Aligned_cols=17 Identities=41% Similarity=0.440 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy7063 4 LEKISEIEKEIARTQKN 20 (188)
Q Consensus 4 ~~~i~~~e~e~~~~~~~ 20 (188)
++||+.-|+.|+..-||
T Consensus 9 rrriarwekriayalkn 25 (26)
T 1hji_B 9 RRRIARWEKRIAYALKN 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 67899999998876665
No 308
>4a94_C Carboxypeptidase inhibitor; hydrolase-hydrolase inhibitor complex, CPA4, NVCI, PCI, LCI; 1.70A {Nerita versicolor}
Probab=21.12 E-value=22 Score=21.36 Aligned_cols=7 Identities=57% Similarity=1.004 Sum_probs=5.8
Q ss_pred CCCcccC
Q psy7063 166 YSPQRVG 172 (188)
Q Consensus 166 ~~~qrvg 172 (188)
|.|||||
T Consensus 44 fegqrvg 50 (53)
T 4a94_C 44 FEGQRVG 50 (53)
T ss_dssp ETTEEEC
T ss_pred ECCeEee
Confidence 6789988
No 309
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=21.10 E-value=54 Score=24.79 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy7063 3 ILEKISEIEKEIARTQKNKV 22 (188)
Q Consensus 3 i~~~i~~~e~e~~~~~~~~~ 22 (188)
...||.++|+||+.++..|-
T Consensus 107 s~~ri~~lekeL~~i~~~~P 126 (160)
T 2cly_B 107 SKTRIQEYEKELEKMRNIIP 126 (160)
T ss_dssp HHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 45799999999999998773
No 310
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=20.47 E-value=45 Score=22.57 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=32.9
Q ss_pred EEEeccccccHHHHHHHHHHhcccceeeeCCCCCCCCCCCcEEeccCCCCCCCCCcccCCCccccCCCeEEEe
Q psy7063 114 VVVSCNMKLNLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLILRKGGTSTKYSPQRVGLAHVMADEDVIQIV 186 (188)
Q Consensus 114 vpISA~~~~gld~L~~~I~~~L~~irVY~k~~g~~~d~~~p~il~~gg~~~k~~~qrvg~d~~L~d~Dvv~iv 186 (188)
+.++-+.+.-+..|..+....- |-++.. .-.++-.| . +..|..=-.||.++|||.|..+
T Consensus 22 l~f~I~~~t~v~kLi~ayc~~~----------~I~~~~-~IrllFDG-d--RLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 22 LRLSIPVDFTVKDLIKRYCTEV----------KISFHE-RIRLEFEG-E--WLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEEEEETTSBHHHHHHHHHHHH----------TCCCCT-TCEEEETT-E--ECCTTSBGGGSSCCTTCEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHHHc----------CCCcCc-eEEEEEcC-c--ccCccCChhhhCCcCCceeeee
Confidence 4455556666666666655443 433211 23333333 2 1233334568999999999876
No 311
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=20.33 E-value=94 Score=17.44 Aligned_cols=17 Identities=53% Similarity=0.759 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy7063 3 ILEKISEIEKEIARTQK 19 (188)
Q Consensus 3 i~~~i~~~e~e~~~~~~ 19 (188)
++.+=++||.|.+|.++
T Consensus 13 Ll~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 13 ILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 56677889999999875
No 312
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=20.17 E-value=2.4e+02 Score=22.04 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=47.8
Q ss_pred eEEEccC-C----ccchhchhhHHHHHHhhhhhcccceeeEEEEecCC-----chHHHHHHHhcCC--CCcEEEEEecCC
Q psy7063 30 GTFQSYT-S----SINRHYYYKSARAYEADTLPSKLTLKNVLFREDCN-----ADELIDVINANRV--YLPCIYAYNKID 97 (188)
Q Consensus 30 ~~~~~~~-~----~ln~~l~~~~~~a~~~~~~~~~i~~ADvvl~~D~s-----~dd~~~~l~~~~~--~kP~IlV~NKiD 97 (188)
+..|+|+ + .+|+++-+.++ +..++. ++.+..++++.|.. .-++.+++..... .+.+++|.+ |
T Consensus 87 G~~fgP~pR~~~~klnkK~rrlAl---~sALs~-k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~lg~~~~~~~LiV~~--~ 160 (210)
T 3v2d_F 87 GVVFGPKPRDYSYTLPKKVRKKGL---AMAVAD-RAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTG--N 160 (210)
T ss_dssp CCSSCCCCCCCCCCCCHHHHHHHH---HHHHHH-HHHTTCEEEESCCTTCSSCHHHHHHHHHHTTCCSSSCEEEECS--C
T ss_pred eeeCCCCCccceeeCCHHHHHHHH---HHHHHH-HHhcCCEEEecccccCCccHHHHHHHHHHcCCCCCCceEEEeC--C
Confidence 4577766 3 38887766555 344444 34444566555443 3356666654333 256677765 3
Q ss_pred CCChHHHH-HHhcCCCEEEEeccccccHHHHHH
Q psy7063 98 QISIEEVD-RIARQPNSVVVSCNMKLNLDYLLD 129 (188)
Q Consensus 98 l~~~e~l~-~l~~~~~~vpISA~~~~gld~L~~ 129 (188)
+.+. ...+.+. +-+-...+.|+.+|+.
T Consensus 161 ----~~~~~a~RNip~-v~v~~~~~lnv~dll~ 188 (210)
T 3v2d_F 161 ----ELVRRAARNLPW-VVTLAPEGLNVYDIVR 188 (210)
T ss_dssp ----HHHHHHHTTCTT-EEEECGGGCCHHHHHH
T ss_pred ----hhHHHHHhCcCC-ceEEeeCCccHHHHhC
Confidence 3332 2234443 4444456788777664
No 313
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=20.08 E-value=70 Score=22.56 Aligned_cols=20 Identities=55% Similarity=0.587 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q psy7063 2 GILEKISEIEKEIARTQKNK 21 (188)
Q Consensus 2 ~i~~~i~~~e~e~~~~~~~~ 21 (188)
.|+.||+-||.|+++.+...
T Consensus 10 ~~~~~~~~~~~~~sQLktTn 29 (107)
T 2wps_A 10 EILSKIYHIENEIARIKKLI 29 (107)
T ss_dssp HHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 47889999999999987765
Done!