RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7063
         (188 letters)



>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 319

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 14/125 (11%)

Query: 52  EADTLPSKLTLKNVLFREDCNADELIDVINA-NRVYLPCIYAYNKIDQISIEEVDRIARQ 110
           E D   +   L         + D+L+   +   RV  P + A NK D  S E++ R+ R+
Sbjct: 179 ENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLVRE 238

Query: 111 ---PNSVVVSCNMKL----------NLDYLLDIIWLYLSLIRVYTKKPGAPPDFDDGLIL 157
                 +V+  +                  +     +  L  +  K+  A     + ++ 
Sbjct: 239 EEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLD 298

Query: 158 RKGGT 162
           R G T
Sbjct: 299 RFGST 303


>d2g03a1 a.265.1.1 (A:11-187) Hypothetical protein NMA0004
           {Neisseria meningitidis [TaxId: 487]}
          Length = 177

 Score = 25.0 bits (54), Expect = 4.7
 Identities = 6/54 (11%), Positives = 19/54 (35%)

Query: 16  RTQKNKVLAYCWSKGTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLFRE 69
           R+ +  +               ++++  Y ++      + L  +  LK+ L  +
Sbjct: 105 RSTRIWLDLVLKKNLKKVVNWQNVSKTLYLQAMERSPVNDLELRFLLKDNLTDD 158


>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 76

 Score = 23.9 bits (52), Expect = 4.7
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 169 QRVGLAHVMADEDVIQIV 186
           +RVG  + +   D+++IV
Sbjct: 57  RRVGEDYELQFNDIVKIV 74


>d2blna1 b.46.1.1 (A:204-304) Polymyxin resistance protein ArnA,
           domain 2 {Escherichia coli [TaxId: 562]}
          Length = 101

 Score = 24.4 bits (52), Expect = 5.2
 Identities = 11/91 (12%), Positives = 23/91 (25%)

Query: 70  DCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVSCNMKLNLDYLLD 129
              A  L +++ A     P  ++Y    + ++           +   S      L     
Sbjct: 8   HKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACG 67

Query: 130 IIWLYLSLIRVYTKKPGAPPDFDDGLILRKG 160
              L +   +               L L +G
Sbjct: 68  DGALEIVTGQAGDGITMQGSQLAQTLGLVQG 98


>d2f6sa1 a.265.1.1 (A:1-177) Cell filamentation protein Fic
           {Helicobacter pylori [TaxId: 210]}
          Length = 177

 Score = 25.0 bits (54), Expect = 6.1
 Identities = 12/71 (16%), Positives = 21/71 (29%)

Query: 16  RTQKNKVLAYCWSKGTFQSYTSSINRHYYYKSARAYEADTLPSKLTLKNVLFREDCNADE 75
           R  +  +      +         I++  Y  +      + L  K  LK  L     +   
Sbjct: 104 RATRIWLDLLLKKELKKIVLWDRIDKAAYLSAMERSPVNDLEIKTLLKKHLSSNTNDPLT 163

Query: 76  LIDVINANRVY 86
           LI  I  +  Y
Sbjct: 164 LIKGITQSYYY 174


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0549    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 728,822
Number of extensions: 33085
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 9
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)