Query psy7068
Match_columns 487
No_of_seqs 229 out of 1313
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 17:16:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1029|consensus 99.9 1.4E-26 3E-31 250.2 16.9 207 268-475 2-277 (1118)
2 KOG0998|consensus 99.9 4.5E-23 9.6E-28 233.2 11.1 268 217-485 58-376 (847)
3 KOG0027|consensus 99.8 2.8E-19 6.1E-24 163.2 17.1 142 276-454 2-148 (151)
4 COG5126 FRQ1 Ca2+-binding prot 99.8 6.8E-19 1.5E-23 163.9 16.6 137 275-453 13-154 (160)
5 KOG1029|consensus 99.8 1.4E-19 3.1E-24 196.4 13.3 101 272-372 185-285 (1118)
6 PTZ00183 centrin; Provisional 99.8 2.3E-17 5.1E-22 147.8 17.5 141 273-454 8-153 (158)
7 PTZ00184 calmodulin; Provision 99.8 3.3E-17 7.2E-22 144.6 17.0 139 274-453 3-146 (149)
8 PF12763 EF-hand_4: Cytoskelet 99.7 3.4E-18 7.3E-23 149.1 6.8 95 275-370 3-99 (104)
9 PF12763 EF-hand_4: Cytoskelet 99.7 3.4E-17 7.5E-22 142.8 8.3 96 388-483 4-101 (104)
10 smart00027 EH Eps15 homology d 99.7 3.9E-16 8.4E-21 132.6 10.7 95 385-479 1-96 (96)
11 KOG0037|consensus 99.7 3.7E-15 7.9E-20 143.9 16.5 141 283-485 58-204 (221)
12 KOG0028|consensus 99.6 4E-15 8.7E-20 137.8 15.5 143 271-454 22-169 (172)
13 smart00027 EH Eps15 homology d 99.6 1.5E-15 3.3E-20 129.0 11.0 95 273-367 1-95 (96)
14 KOG0998|consensus 99.5 9.5E-15 2.1E-19 166.0 7.9 199 280-478 9-215 (847)
15 KOG0030|consensus 99.5 1.3E-13 2.7E-18 125.3 13.2 140 275-453 4-149 (152)
16 KOG0034|consensus 99.4 2.5E-12 5.4E-17 123.0 14.9 137 275-454 26-174 (187)
17 KOG0044|consensus 99.4 3.1E-12 6.7E-17 122.8 14.4 136 275-454 22-174 (193)
18 KOG0031|consensus 99.4 7.2E-12 1.6E-16 115.7 16.0 135 275-454 25-164 (171)
19 KOG0036|consensus 99.4 3.4E-12 7.3E-17 132.8 15.5 134 275-455 7-146 (463)
20 KOG1955|consensus 99.4 4.2E-13 9.1E-18 141.4 8.2 104 382-485 219-323 (737)
21 KOG1955|consensus 99.3 2.1E-12 4.6E-17 136.2 8.0 99 271-369 220-318 (737)
22 KOG4223|consensus 99.2 2.5E-11 5.5E-16 123.2 9.9 133 283-451 164-301 (325)
23 KOG4223|consensus 99.2 2E-10 4.3E-15 116.8 12.6 165 277-471 72-242 (325)
24 cd00052 EH Eps15 homology doma 99.1 2.7E-10 5.9E-15 88.7 8.2 66 284-349 1-66 (67)
25 PF13499 EF-hand_7: EF-hand do 99.0 6.9E-10 1.5E-14 87.1 7.3 60 283-342 1-66 (66)
26 KOG0377|consensus 99.0 4.3E-09 9.3E-14 110.6 12.0 146 283-460 465-620 (631)
27 cd05022 S-100A13 S-100A13: S-1 98.9 3.3E-09 7.1E-14 90.2 8.4 70 279-348 5-79 (89)
28 KOG1954|consensus 98.9 8.5E-10 1.8E-14 114.4 5.6 97 271-369 434-530 (532)
29 cd00052 EH Eps15 homology doma 98.9 3.3E-09 7.1E-14 82.5 7.6 65 397-461 2-67 (67)
30 KOG0027|consensus 98.9 1.4E-08 3E-13 92.9 12.6 121 315-485 7-135 (151)
31 PF13499 EF-hand_7: EF-hand do 98.8 1.2E-08 2.6E-13 80.0 8.1 59 395-453 1-66 (66)
32 PLN02964 phosphatidylserine de 98.8 2.5E-08 5.5E-13 110.7 13.3 105 271-421 131-243 (644)
33 KOG0044|consensus 98.8 3E-08 6.4E-13 95.6 10.7 108 282-420 64-174 (193)
34 cd05027 S-100B S-100B: S-100B 98.8 2.9E-08 6.3E-13 84.0 9.3 69 279-347 5-82 (88)
35 PTZ00183 centrin; Provisional 98.8 6.8E-08 1.5E-12 86.6 11.9 99 316-456 17-119 (158)
36 cd05022 S-100A13 S-100A13: S-1 98.8 2.9E-08 6.3E-13 84.5 7.8 68 394-461 8-81 (89)
37 PTZ00184 calmodulin; Provision 98.7 1.5E-07 3.3E-12 83.0 11.8 98 316-455 11-112 (149)
38 cd05025 S-100A1 S-100A1: S-100 98.7 6.4E-08 1.4E-12 81.6 8.6 68 281-348 8-84 (92)
39 KOG1954|consensus 98.7 1.3E-08 2.9E-13 105.7 5.4 97 383-480 434-530 (532)
40 cd05026 S-100Z S-100Z: S-100Z 98.7 9.1E-08 2E-12 81.5 9.4 67 280-346 8-83 (93)
41 cd00213 S-100 S-100: S-100 dom 98.7 9.7E-08 2.1E-12 79.5 9.4 68 278-345 4-80 (88)
42 COG5126 FRQ1 Ca2+-binding prot 98.7 6.5E-08 1.4E-12 90.7 7.8 64 279-342 89-154 (160)
43 KOG0037|consensus 98.6 2.3E-07 5.1E-12 90.3 11.4 121 283-453 95-218 (221)
44 cd05031 S-100A10_like S-100A10 98.6 1.7E-07 3.7E-12 79.4 9.3 67 280-346 6-81 (94)
45 cd05023 S-100A11 S-100A11: S-1 98.6 1.9E-07 4.1E-12 79.3 9.4 70 278-347 5-83 (89)
46 cd05029 S-100A6 S-100A6: S-100 98.6 1.7E-07 3.6E-12 79.4 8.8 69 279-347 7-82 (88)
47 cd00252 SPARC_EC SPARC_EC; ext 98.5 2.8E-07 6.1E-12 82.2 8.4 65 276-342 42-106 (116)
48 PF13833 EF-hand_8: EF-hand do 98.5 3.2E-07 7E-12 69.5 6.7 49 406-454 1-52 (54)
49 cd05027 S-100B S-100B: S-100B 98.5 5E-07 1.1E-11 76.5 8.4 65 394-458 8-82 (88)
50 cd00051 EFh EF-hand, calcium b 98.5 5.4E-07 1.2E-11 66.6 7.2 59 284-342 2-62 (63)
51 cd05026 S-100Z S-100Z: S-100Z 98.5 6.3E-07 1.4E-11 76.3 8.0 63 394-456 10-82 (93)
52 KOG0028|consensus 98.5 1.4E-06 3.1E-11 81.4 10.8 98 316-455 33-134 (172)
53 cd05029 S-100A6 S-100A6: S-100 98.4 9.3E-07 2E-11 74.9 8.7 64 395-458 11-82 (88)
54 cd05023 S-100A11 S-100A11: S-1 98.4 9.2E-07 2E-11 75.1 8.5 65 394-458 9-83 (89)
55 KOG0041|consensus 98.4 7.3E-07 1.6E-11 86.1 7.8 71 276-346 93-165 (244)
56 cd05025 S-100A1 S-100A1: S-100 98.4 9.1E-07 2E-11 74.6 7.1 65 394-458 9-83 (92)
57 PF13833 EF-hand_8: EF-hand do 98.4 1.2E-06 2.6E-11 66.3 6.7 49 295-343 1-52 (54)
58 PLN02964 phosphatidylserine de 98.3 1.6E-06 3.6E-11 96.5 10.0 139 287-473 112-258 (644)
59 KOG2643|consensus 98.3 2.7E-06 5.8E-11 89.9 10.9 156 291-467 295-463 (489)
60 cd00213 S-100 S-100: S-100 dom 98.3 2.7E-06 5.9E-11 70.7 8.9 66 391-456 5-80 (88)
61 cd05031 S-100A10_like S-100A10 98.3 2.2E-06 4.7E-11 72.7 8.0 63 393-455 7-79 (94)
62 KOG4251|consensus 98.3 1.4E-06 3E-11 86.5 6.7 149 277-453 96-262 (362)
63 cd05030 calgranulins Calgranul 98.3 5.4E-06 1.2E-10 69.9 8.9 68 279-346 5-81 (88)
64 cd00051 EFh EF-hand, calcium b 98.2 5.6E-06 1.2E-10 61.1 7.0 57 397-453 3-62 (63)
65 KOG0034|consensus 98.2 1.5E-05 3.2E-10 76.7 11.5 102 285-422 69-176 (187)
66 KOG0038|consensus 98.2 9.5E-06 2.1E-10 75.2 9.5 94 319-453 74-175 (189)
67 KOG0041|consensus 98.2 4.2E-06 9E-11 81.0 7.4 68 389-456 94-164 (244)
68 cd00252 SPARC_EC SPARC_EC; ext 98.2 5.7E-06 1.2E-10 73.8 7.6 62 390-453 44-106 (116)
69 KOG4251|consensus 98.2 6.6E-06 1.4E-10 81.7 8.7 158 286-458 144-348 (362)
70 cd05030 calgranulins Calgranul 98.1 1.5E-05 3.3E-10 67.2 8.2 62 395-456 9-80 (88)
71 KOG0036|consensus 98.1 2.9E-05 6.4E-10 81.8 11.4 124 282-453 51-181 (463)
72 KOG0040|consensus 98.0 6.2E-05 1.4E-09 88.4 13.6 136 274-454 2245-2397(2399)
73 KOG2643|consensus 97.9 2.6E-05 5.7E-10 82.6 8.0 57 291-347 208-264 (489)
74 KOG0377|consensus 97.9 2.4E-05 5.2E-10 83.0 7.1 67 282-348 547-619 (631)
75 PF14658 EF-hand_9: EF-hand do 97.8 4.5E-05 9.7E-10 61.9 6.4 59 286-344 2-64 (66)
76 KOG2562|consensus 97.8 0.00018 4E-09 76.9 11.2 124 285-451 281-420 (493)
77 cd05024 S-100A10 S-100A10: A s 97.7 0.00015 3.2E-09 62.4 8.4 65 395-459 9-80 (91)
78 PF00036 EF-hand_1: EF hand; 97.7 4.5E-05 9.8E-10 52.0 3.8 27 428-454 1-27 (29)
79 cd05024 S-100A10 S-100A10: A s 97.7 0.00034 7.4E-09 60.2 9.5 66 280-346 6-78 (91)
80 PF00036 EF-hand_1: EF hand; 97.6 6.7E-05 1.5E-09 51.2 3.5 27 317-343 1-27 (29)
81 KOG0046|consensus 97.5 0.00023 5E-09 77.0 8.3 69 275-344 12-85 (627)
82 PRK12309 transaldolase/EF-hand 97.4 0.00033 7.2E-09 74.4 7.6 57 280-347 332-388 (391)
83 PF13405 EF-hand_6: EF-hand do 97.4 0.00019 4.2E-09 49.0 3.8 30 283-312 1-31 (31)
84 KOG0031|consensus 97.4 0.00052 1.1E-08 64.3 7.8 62 282-343 101-164 (171)
85 PF10591 SPARC_Ca_bdg: Secrete 97.3 7.8E-05 1.7E-09 66.1 1.1 64 278-341 50-113 (113)
86 KOG0169|consensus 97.3 0.0019 4.2E-08 72.7 12.0 133 277-454 131-273 (746)
87 KOG2562|consensus 97.2 0.0024 5.2E-08 68.6 11.2 61 393-454 278-342 (493)
88 KOG4666|consensus 97.1 0.00059 1.3E-08 70.4 5.5 116 295-453 240-357 (412)
89 KOG0046|consensus 97.1 0.0012 2.6E-08 71.7 7.5 72 388-459 13-89 (627)
90 PRK12309 transaldolase/EF-hand 97.1 0.0035 7.5E-08 66.8 11.0 55 393-458 333-388 (391)
91 PF14658 EF-hand_9: EF-hand do 97.0 0.002 4.4E-08 52.3 6.4 56 399-454 3-63 (66)
92 PF14788 EF-hand_10: EF hand; 96.9 0.0031 6.8E-08 48.8 6.4 48 409-456 1-50 (51)
93 PF14788 EF-hand_10: EF hand; 96.9 0.0031 6.8E-08 48.8 5.9 47 298-344 1-49 (51)
94 KOG0751|consensus 96.9 0.0072 1.6E-07 65.5 10.8 131 280-457 31-177 (694)
95 PF13202 EF-hand_5: EF hand; P 96.8 0.0016 3.4E-08 42.9 3.6 25 429-453 1-25 (25)
96 PF13202 EF-hand_5: EF hand; P 96.7 0.0021 4.6E-08 42.3 3.3 22 285-306 2-23 (25)
97 KOG0038|consensus 96.5 0.004 8.7E-08 58.1 5.4 60 283-342 109-175 (189)
98 PF13405 EF-hand_6: EF-hand do 96.4 0.0048 1E-07 42.0 3.9 27 428-454 1-27 (31)
99 KOG0751|consensus 96.4 0.024 5.1E-07 61.7 10.7 91 283-422 109-208 (694)
100 KOG4065|consensus 96.4 0.0099 2.2E-07 53.5 6.6 65 275-341 62-142 (144)
101 PF10591 SPARC_Ca_bdg: Secrete 96.3 0.0024 5.2E-08 56.7 2.3 61 392-452 52-113 (113)
102 KOG0030|consensus 96.2 0.05 1.1E-06 50.5 10.3 103 315-456 10-117 (152)
103 KOG4065|consensus 95.7 0.034 7.4E-07 50.2 7.0 54 399-452 72-142 (144)
104 PF09279 EF-hand_like: Phospho 95.3 0.037 8E-07 45.6 5.4 58 396-453 2-67 (83)
105 KOG0040|consensus 95.2 0.038 8.2E-07 66.3 6.7 67 387-453 2246-2322(2399)
106 smart00054 EFh EF-hand, calciu 95.1 0.028 6.1E-07 34.8 3.1 27 428-454 1-27 (29)
107 smart00054 EFh EF-hand, calciu 94.7 0.042 9.1E-07 34.0 3.1 25 318-342 2-26 (29)
108 PF05042 Caleosin: Caleosin re 94.6 0.22 4.9E-06 47.6 9.1 103 283-420 8-165 (174)
109 KOG1707|consensus 94.5 0.39 8.4E-06 53.6 12.1 163 273-452 186-374 (625)
110 KOG3866|consensus 93.7 0.22 4.7E-06 51.7 7.6 24 430-453 299-322 (442)
111 PF09279 EF-hand_like: Phospho 93.6 0.14 3.1E-06 42.1 5.1 60 283-343 1-68 (83)
112 PF05517 p25-alpha: p25-alpha 93.5 0.38 8.3E-06 44.9 8.3 59 404-462 13-76 (154)
113 KOG4578|consensus 92.4 0.11 2.3E-06 54.2 3.2 61 283-343 334-397 (421)
114 KOG0042|consensus 92.3 0.26 5.7E-06 54.7 6.2 74 273-346 584-659 (680)
115 KOG3555|consensus 91.5 0.26 5.7E-06 51.8 4.9 66 275-342 243-308 (434)
116 PF05517 p25-alpha: p25-alpha 91.3 0.67 1.4E-05 43.3 7.0 65 285-349 2-74 (154)
117 PF05042 Caleosin: Caleosin re 91.3 2 4.3E-05 41.3 10.2 124 316-450 7-161 (174)
118 PLN02952 phosphoinositide phos 91.0 0.96 2.1E-05 51.0 9.0 63 392-454 36-109 (599)
119 KOG4666|consensus 90.6 0.51 1.1E-05 49.4 6.0 99 282-423 259-361 (412)
120 KOG0035|consensus 90.4 1.6 3.5E-05 51.0 10.3 71 276-346 741-818 (890)
121 KOG0169|consensus 89.7 2.4 5.1E-05 48.7 10.6 98 315-456 135-233 (746)
122 KOG0042|consensus 87.7 1 2.2E-05 50.3 6.0 72 386-457 585-659 (680)
123 PRK14136 recX recombination re 87.2 12 0.00026 39.1 13.1 134 279-485 160-293 (309)
124 KOG3555|consensus 86.9 0.94 2E-05 47.8 5.0 114 274-433 199-323 (434)
125 KOG3866|consensus 86.7 1.2 2.5E-05 46.6 5.4 59 285-343 247-323 (442)
126 PF09069 EF-hand_3: EF-hand; 85.7 4.3 9.3E-05 35.1 7.6 60 281-343 2-74 (90)
127 KOG4578|consensus 84.2 1 2.2E-05 47.3 3.6 54 400-453 339-396 (421)
128 PF05099 TerB: Tellurite resis 82.1 0.89 1.9E-05 40.5 2.1 59 283-342 25-87 (140)
129 KOG2243|consensus 81.8 2 4.4E-05 51.9 5.1 57 288-344 4063-4120(5019)
130 PRK09430 djlA Dna-J like membr 79.3 16 0.00035 37.1 10.2 102 294-436 67-175 (267)
131 cd07313 terB_like_2 tellurium 78.4 10 0.00022 32.1 7.3 49 295-343 12-64 (104)
132 KOG1923|consensus 77.0 49 0.0011 38.6 13.9 66 279-347 401-470 (830)
133 PF15437 PGBA_C: Plasminogen-b 76.5 2 4.4E-05 36.4 2.3 26 24-49 58-83 (86)
134 PF08726 EFhand_Ca_insen: Ca2+ 76.0 0.39 8.5E-06 39.4 -2.0 59 394-453 6-67 (69)
135 KOG2243|consensus 73.1 7.7 0.00017 47.4 6.5 65 390-454 4041-4119(5019)
136 KOG4347|consensus 73.0 4.6 0.0001 45.7 4.7 55 283-338 556-612 (671)
137 PF09069 EF-hand_3: EF-hand; 72.2 18 0.00039 31.3 7.1 58 394-453 3-73 (90)
138 KOG1924|consensus 72.0 18 0.00039 42.2 8.9 14 332-345 761-774 (1102)
139 KOG1924|consensus 71.8 14 0.00029 43.1 8.0 18 272-289 643-660 (1102)
140 PRK14137 recX recombination re 71.4 30 0.00065 33.8 9.4 118 297-485 53-170 (195)
141 PF08976 DUF1880: Domain of un 70.6 2.8 6.1E-05 37.9 2.0 31 313-343 4-34 (118)
142 PF00046 Homeobox: Homeobox do 69.4 21 0.00046 26.9 6.4 46 273-323 4-49 (57)
143 KOG1265|consensus 68.0 42 0.0009 39.9 10.8 76 392-474 219-311 (1189)
144 PRK00117 recX recombination re 68.0 69 0.0015 29.4 10.7 132 282-485 12-144 (157)
145 cd07311 terB_like_1 tellurium 67.4 92 0.002 29.2 11.4 108 278-435 20-133 (150)
146 cd00086 homeodomain Homeodomai 66.5 25 0.00054 26.3 6.2 46 274-324 5-50 (59)
147 PLN02952 phosphoinositide phos 62.8 44 0.00096 38.0 9.8 52 295-347 13-68 (599)
148 KOG4347|consensus 60.9 94 0.002 35.7 11.7 63 383-449 547-612 (671)
149 COG4103 Uncharacterized protei 58.9 65 0.0014 30.3 8.5 56 286-343 34-93 (148)
150 PF01397 Terpene_synth: Terpen 58.8 42 0.00091 32.5 7.6 55 297-353 45-106 (183)
151 cd07313 terB_like_2 tellurium 57.5 17 0.00037 30.8 4.3 47 407-453 13-63 (104)
152 cd07316 terB_like_DjlA N-termi 57.1 73 0.0016 26.8 8.1 11 333-343 53-63 (106)
153 KOG1707|consensus 56.3 18 0.00038 41.0 5.2 65 274-344 307-377 (625)
154 PF08976 DUF1880: Domain of un 55.7 9.2 0.0002 34.7 2.4 30 424-453 4-33 (118)
155 KOG0843|consensus 54.6 87 0.0019 30.7 8.8 46 271-322 104-149 (197)
156 PLN02222 phosphoinositide phos 53.8 28 0.0006 39.5 6.3 60 394-454 25-89 (581)
157 PF12174 RST: RCD1-SRO-TAF4 (R 51.6 31 0.00066 28.5 4.6 48 409-457 8-55 (70)
158 PLN02230 phosphoinositide phos 51.2 37 0.0008 38.7 6.7 63 392-454 27-101 (598)
159 PLN02228 Phosphoinositide phos 51.0 38 0.00082 38.3 6.8 62 392-454 22-91 (567)
160 PRK14135 recX recombination re 48.4 2.7E+02 0.0059 27.7 11.9 71 408-485 121-193 (263)
161 smart00389 HOX Homeodomain. DN 46.1 95 0.0021 22.9 6.4 46 274-324 5-50 (56)
162 PF00046 Homeobox: Homeobox do 45.9 39 0.00086 25.4 4.3 45 386-434 5-49 (57)
163 KOG1264|consensus 45.9 85 0.0018 37.2 8.5 66 277-343 138-207 (1267)
164 KOG0035|consensus 45.0 40 0.00088 39.9 5.9 66 388-453 741-814 (890)
165 TIGR02698 CopY_TcrY copper tra 44.0 2.5E+02 0.0053 25.4 12.1 43 276-324 2-45 (130)
166 PF14513 DAG_kinase_N: Diacylg 43.8 12 0.00027 34.7 1.3 71 408-482 6-83 (138)
167 KOG4004|consensus 43.5 8.1 0.00018 38.2 0.1 56 288-344 193-250 (259)
168 PF03979 Sigma70_r1_1: Sigma-7 43.0 24 0.00052 29.4 2.9 46 393-439 6-51 (82)
169 TIGR02675 tape_meas_nterm tape 42.0 66 0.0014 26.5 5.3 55 276-338 10-75 (75)
170 COG2137 OraA Uncharacterized p 41.9 2.5E+02 0.0054 27.1 9.9 119 299-485 35-155 (174)
171 cd00086 homeodomain Homeodomai 41.6 85 0.0018 23.3 5.5 44 388-435 7-50 (59)
172 KOG4004|consensus 40.9 10 0.00023 37.5 0.4 50 404-454 199-249 (259)
173 TIGR02675 tape_meas_nterm tape 40.3 32 0.00069 28.4 3.1 38 406-449 27-75 (75)
174 PLN02222 phosphoinositide phos 40.1 77 0.0017 36.1 7.0 59 283-343 26-89 (581)
175 PF05788 Orbi_VP1: Orbivirus R 38.2 39 0.00085 40.6 4.5 85 395-479 1123-1216(1301)
176 PF04391 DUF533: Protein of un 37.2 2.7E+02 0.0058 27.2 9.4 31 404-434 155-185 (188)
177 TIGR03830 CxxCG_CxxCG_HTH puta 36.2 63 0.0014 28.1 4.6 39 396-434 51-89 (127)
178 COG2979 Uncharacterized protei 35.5 3.4E+02 0.0074 27.3 9.8 32 404-435 186-217 (225)
179 PLN02228 Phosphoinositide phos 34.2 1.2E+02 0.0026 34.4 7.4 59 283-343 25-91 (567)
180 PF06014 DUF910: Bacterial pro 33.2 92 0.002 25.3 4.6 21 440-460 39-59 (62)
181 TIGR01565 homeo_ZF_HD homeobox 32.5 87 0.0019 24.9 4.3 40 275-319 7-50 (58)
182 PRK14135 recX recombination re 32.4 4.6E+02 0.01 26.0 10.6 71 412-485 178-250 (263)
183 PF07462 MSP1_C: Merozoite sur 31.1 1.3E+02 0.0028 34.0 6.8 10 227-236 333-342 (574)
184 PF05819 NolX: NolX protein; 30.3 6.1E+02 0.013 28.7 11.6 64 386-451 362-438 (624)
185 PF14513 DAG_kinase_N: Diacylg 30.0 42 0.00091 31.2 2.5 47 297-343 6-59 (138)
186 PLN02223 phosphoinositide phos 29.8 1.2E+02 0.0025 34.3 6.3 61 394-454 16-91 (537)
187 TIGR03830 CxxCG_CxxCG_HTH puta 29.7 1.1E+02 0.0023 26.6 5.0 48 276-323 42-89 (127)
188 cd07316 terB_like_DjlA N-termi 28.9 1.4E+02 0.0031 24.9 5.5 17 430-448 78-94 (106)
189 smart00389 HOX Homeodomain. DN 28.4 1.8E+02 0.0039 21.4 5.4 44 388-435 7-50 (56)
190 KOG0719|consensus 27.8 6.4E+02 0.014 25.9 10.4 66 277-343 27-103 (264)
191 KOG2301|consensus 27.5 41 0.0009 42.4 2.6 68 275-343 1410-1483(1592)
192 PLN02230 phosphoinositide phos 27.1 1.9E+02 0.004 33.2 7.4 62 281-343 28-101 (598)
193 KOG4849|consensus 26.9 3.9E+02 0.0085 28.9 9.1 19 125-143 186-204 (498)
194 PF07499 RuvA_C: RuvA, C-termi 26.6 1.3E+02 0.0027 22.5 4.2 37 302-340 4-40 (47)
195 cd07177 terB_like tellurium re 26.4 2.5E+02 0.0054 22.8 6.4 13 404-416 83-95 (104)
196 PRK09430 djlA Dna-J like membr 26.1 1.3E+02 0.0028 30.7 5.5 50 404-453 66-118 (267)
197 PF08414 NADPH_Ox: Respiratory 26.1 1.3E+02 0.0027 26.8 4.6 26 315-342 29-54 (100)
198 PF07499 RuvA_C: RuvA, C-termi 26.0 1.4E+02 0.0031 22.2 4.4 38 412-451 3-40 (47)
199 COG0541 Ffh Signal recognition 25.8 2.9E+02 0.0062 30.6 8.2 93 329-437 323-419 (451)
200 PHA03378 EBNA-3B; Provisional 25.7 3.9E+02 0.0085 31.4 9.4 34 31-64 507-544 (991)
201 PF00404 Dockerin_1: Dockerin 25.7 79 0.0017 20.3 2.4 17 437-453 1-17 (21)
202 PF08726 EFhand_Ca_insen: Ca2+ 25.3 74 0.0016 26.2 2.9 57 282-341 6-66 (69)
203 TIGR01565 homeo_ZF_HD homeobox 25.1 87 0.0019 24.9 3.2 40 388-431 8-51 (58)
204 COG1508 RpoN DNA-directed RNA 25.0 9.7E+02 0.021 26.6 12.1 64 275-341 104-171 (444)
205 cd08315 Death_TRAILR_DR4_DR5 D 24.6 1.1E+02 0.0024 26.5 4.0 38 282-323 4-41 (96)
206 cd07176 terB tellurite resista 24.3 1.2E+02 0.0026 25.4 4.2 10 405-414 89-98 (111)
207 COG1692 Calcineurin-like phosp 23.8 63 0.0014 33.1 2.7 38 105-145 161-203 (266)
208 PF12174 RST: RCD1-SRO-TAF4 (R 22.3 1.4E+02 0.003 24.6 4.0 34 313-346 22-55 (70)
209 PF09068 EF-hand_2: EF hand; 21.7 3.9E+02 0.0085 24.2 7.2 64 280-343 39-124 (127)
210 PF04876 Tenui_NCP: Tenuivirus 21.7 6.9E+02 0.015 24.0 8.8 48 291-343 63-110 (175)
211 PF02631 RecX: RecX family; I 21.6 2.7E+02 0.0059 24.3 6.1 63 412-484 45-109 (121)
212 PF09373 PMBR: Pseudomurein-bi 20.8 1.5E+02 0.0032 20.7 3.3 27 441-467 2-29 (33)
213 PF03979 Sigma70_r1_1: Sigma-7 20.5 1E+02 0.0022 25.6 2.9 48 279-328 4-51 (82)
214 KOG1365|consensus 20.2 2.7E+02 0.0058 30.5 6.5 31 123-153 342-384 (508)
No 1
>KOG1029|consensus
Probab=99.94 E-value=1.4e-26 Score=250.20 Aligned_cols=207 Identities=36% Similarity=0.651 Sum_probs=181.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHh
Q psy7068 268 GGPPLEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDL 347 (487)
Q Consensus 268 ~~~~~~w~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~ 347 (487)
.+....|+|+++|+.++.+.|..+-. +.|+|++++++.+|..+||+...|.+||.+.|.|+||++|..||..+|.|+..
T Consensus 2 ng~~n~WavT~~Er~K~~~qF~~Lkp-~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~l 80 (1118)
T KOG1029|consen 2 NGMTNPWAVTDEERQKHDAQFGQLKP-GQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKL 80 (1118)
T ss_pred CCCCCccccchHHHHHHHHHHhccCC-CCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHH
Confidence 34567899999999999999999966 99999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCCCCCCCC----------Chhhhhhccc----------------------------------hhhh------
Q psy7068 348 AKGGEKIPVPLPIDMI----------PPAFRRQRQN----------------------------------SVTL------ 377 (487)
Q Consensus 348 a~~g~~lP~~LP~~Lv----------Pps~r~~~~s----------------------------------s~~s------ 377 (487)
.+.|.+||..||++++ .|.|++...+ ++.+
T Consensus 81 kLqG~~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~ 160 (1118)
T KOG1029|consen 81 KLQGIQLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPT 160 (1118)
T ss_pred HhcCCcCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCC
Confidence 9999999999999652 2323332110 0000
Q ss_pred -----------------hhcc-cCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhcC
Q psy7068 378 -----------------AANV-AMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADT 438 (487)
Q Consensus 378 -----------------~~s~-~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~ 438 (487)
..++ ....|.+....|.+|.++|+. |+...|+|++...|.+|..++|+...|++||.+.|.
T Consensus 161 ~~spl~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDv 240 (1118)
T KOG1029|consen 161 SNSPLPHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDV 240 (1118)
T ss_pred CCCCCCCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeecc
Confidence 0001 034799999999999999998 699999999999999999999999999999999999
Q ss_pred CCCCceeHHHHHHHHHHHHHhhcCCCCCCCCChhHHH
Q psy7068 439 DQDGKMNINEFVIACKLISNKLRGFDIPPTLPVSLMQ 475 (487)
Q Consensus 439 D~DGkIS~dEFv~aM~LV~~k~~G~~~P~sLP~~L~~ 475 (487)
|+||+|+-|||+.+|||+..++.|..+|.+||++|+.
T Consensus 241 d~DGkL~~dEfilam~liema~sGq~lP~tlP~E~Vp 277 (1118)
T KOG1029|consen 241 DGDGKLSADEFILAMHLIEMAKSGQPLPKTLPPELVP 277 (1118)
T ss_pred CCCCcccHHHHHHHHHHHHHHhcCCCCCCCCChhhcC
Confidence 9999999999999999999999999999999999875
No 2
>KOG0998|consensus
Probab=99.88 E-value=4.5e-23 Score=233.20 Aligned_cols=268 Identities=26% Similarity=0.459 Sum_probs=223.1
Q ss_pred CCCCCCCCcceeeeccccccc-ccccccchhhhhhhhcC-C--CCCCchhhccc--cCCCCCCCCCCHHHHHHHHHHHHH
Q psy7068 217 PAPVESPWGAFINGWLSTKEK-DLEVNNSNLVDLKKTLA-N--MMSDSEKLYNV--LGGPPLEWAVPHASKLKYTQLFNT 290 (487)
Q Consensus 217 ~~p~~~~~g~fv~~pl~a~~~-~~evs~SsL~~~~~~~p-~--s~~~s~~~~~~--~~~~~~~w~lt~eEk~k~~qiF~~ 290 (487)
.++..+.++||+++|+++++| +.+.............| . +...++..... .......|+++.+++.+|.++|..
T Consensus 58 ~~g~l~~q~f~~~lrlva~aq~~~~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s 137 (847)
T KOG0998|consen 58 GKGFLNRQGFYAALRLVAQAQSGRELSAKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRS 137 (847)
T ss_pred cCCccccccccccchHhhhhhcccCcCccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhc
Confidence 346689999999999999998 77777777322211222 1 11122222111 222277899999999999999999
Q ss_pred hCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhC--CCCCCCCCCCCCCChhhh
Q psy7068 291 TDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKG--GEKIPVPLPIDMIPPAFR 368 (487)
Q Consensus 291 lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~--g~~lP~~LP~~LvPps~r 368 (487)
+.+ ++|.++++.++.+|.+++|+-+.|.+||.+.|.|.+|.|++.||..+||+++..++ ....|..+|+.+|+++..
T Consensus 138 ~~p-~~g~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~~p~P~~~p~~lIpps~~ 216 (847)
T KOG0998|consen 138 LSP-SNGLLSGDKAKPILLNSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGNSEPVPSRLPPSLIPPSKS 216 (847)
T ss_pred cCC-CCCccccchhhhhhhcCCCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhcccCCCCccCCcccCCcchh
Confidence 988 69999999999999999999999999999999999999999999999999999998 789999999999999988
Q ss_pred hhccchh-----------------------------hh----------hhcccCCCC--ccchhHHHHHHHHhhh-cCCC
Q psy7068 369 RQRQNSV-----------------------------TL----------AANVAMDPW--NVSRHERTRFETHFQA-MKPV 406 (487)
Q Consensus 369 ~~~~ss~-----------------------------~s----------~~s~~~d~W--~~s~edk~~~~~iF~~-dkD~ 406 (487)
....... .. ...-....| ++++.++..|.++|.. +++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp~d~~~~~~if~q~d~~~ 296 (847)
T KOG0998|consen 217 ELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSPSDKQKYSKIFSQVDKDN 296 (847)
T ss_pred cccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccChHHHHHHHHHHHhccccC
Confidence 7322110 00 011113458 9999999999999987 5999
Q ss_pred CCcccHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHHh-hcCCCCCCCCChhHHHhhcccccccC
Q psy7068 407 NGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISNK-LRGFDIPPTLPVSLMQSLAGKDKTYD 485 (487)
Q Consensus 407 DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~k-~~G~~~P~sLP~~L~~sl~~~~~~~~ 485 (487)
+|+|+..+++.+|+..|++...++++|.++|++++|.|+++||..+||++.++ .+|..+|.+||.+++.+..+.-+.++
T Consensus 297 dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~~~~~g~~lP~vl~~s~~p~~~~~~~~~~ 376 (847)
T KOG0998|consen 297 DGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQKRAEGRSLPSVLPSSLIPSENRKQTNPT 376 (847)
T ss_pred CCcccccccccccccCCCChhhhhhhhhhcchhccCcccccccchhhhhhhhhhhcCCCCcccccccccCccccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999 69999999999999999988877664
No 3
>KOG0027|consensus
Probab=99.82 E-value=2.8e-19 Score=163.23 Aligned_cols=142 Identities=23% Similarity=0.348 Sum_probs=122.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCC--CHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCC
Q psy7068 276 VPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGL--SQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEK 353 (487)
Q Consensus 276 lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL--~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~ 353 (487)
++.++...++++|+.+|+|++|+|+..||..+|+.+|. +..++..+++.+|.|++|.|+|+||+..|..........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~- 80 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDE- 80 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccc-
Confidence 56788999999999999999999999999999999985 689999999999999999999999999986544311100
Q ss_pred CCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCC--CCHHHHH
Q psy7068 354 IPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSG--LPVATLG 430 (487)
Q Consensus 354 lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~G--L~eeeL~ 430 (487)
......+.++|+. |+|++|+|+.+||+.+|...| ++.++++
T Consensus 81 ------------------------------------~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~ 124 (151)
T KOG0027|consen 81 ------------------------------------EASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECK 124 (151)
T ss_pred ------------------------------------cccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHH
Confidence 0123456667766 589999999999999999997 7789999
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHH
Q psy7068 431 QIWSLADTDQDGKMNINEFVIACK 454 (487)
Q Consensus 431 ~I~~l~D~D~DGkIS~dEFv~aM~ 454 (487)
.+++.+|.|+||.|+|+||+.+|.
T Consensus 125 ~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 125 EMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred HHHHhcCCCCCCeEeHHHHHHHHh
Confidence 999999999999999999999884
No 4
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.81 E-value=6.8e-19 Score=163.88 Aligned_cols=137 Identities=17% Similarity=0.286 Sum_probs=121.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC--CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCC
Q psy7068 275 AVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGE 352 (487)
Q Consensus 275 ~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sG--L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~ 352 (487)
.++++|++++++.|..+|+|++|.|+..+|..+|+.+| .+..++.+|++.+|. +.+.|+|.||+.+|......
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~---- 87 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKR---- 87 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhcc----
Confidence 58999999999999999999999999999999999886 588999999999999 89999999999999643320
Q ss_pred CCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCC--CCHHHH
Q psy7068 353 KIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSG--LPVATL 429 (487)
Q Consensus 353 ~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~G--L~eeeL 429 (487)
.+.++++..+|+. |+|+||+|+..||+.++..+| ++++++
T Consensus 88 -------------------------------------~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev 130 (160)
T COG5126 88 -------------------------------------GDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEV 130 (160)
T ss_pred -------------------------------------CCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHH
Confidence 1234566667776 589999999999999999887 899999
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHH
Q psy7068 430 GQIWSLADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 430 ~~I~~l~D~D~DGkIS~dEFv~aM 453 (487)
+.|++.+|.|+||.|+|++|+.++
T Consensus 131 ~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 131 EKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred HHHHHhcCCCCCceEeHHHHHHHH
Confidence 999999999999999999999876
No 5
>KOG1029|consensus
Probab=99.81 E-value=1.4e-19 Score=196.42 Aligned_cols=101 Identities=56% Similarity=1.013 Sum_probs=98.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCC
Q psy7068 272 LEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGG 351 (487)
Q Consensus 272 ~~w~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g 351 (487)
..|+++...+.+|+++|+.+|+.+.|+|++.+.+.+|..++|+...|..||.+.|+|+||+|+.+||+.+||++..++.|
T Consensus 185 ~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liema~sG 264 (1118)
T KOG1029|consen 185 EEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEMAKSG 264 (1118)
T ss_pred hhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCChhhhhhcc
Q psy7068 352 EKIPVPLPIDMIPPAFRRQRQ 372 (487)
Q Consensus 352 ~~lP~~LP~~LvPps~r~~~~ 372 (487)
++||..||+++|||++|..++
T Consensus 265 q~lP~tlP~E~Vpp~~r~~rs 285 (1118)
T KOG1029|consen 265 QPLPKTLPPELVPPSFRSSRS 285 (1118)
T ss_pred CCCCCCCChhhcCcccccccC
Confidence 999999999999999999764
No 6
>PTZ00183 centrin; Provisional
Probab=99.76 E-value=2.3e-17 Score=147.84 Aligned_cols=141 Identities=20% Similarity=0.241 Sum_probs=122.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC--CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhC
Q psy7068 273 EWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKG 350 (487)
Q Consensus 273 ~w~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sG--L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~ 350 (487)
...++++++.++..+|..+|.|++|+|+..|+..+|+..| ++..++..+|..+|.+++|.|+|+||+.++......
T Consensus 8 ~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~-- 85 (158)
T PTZ00183 8 RPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE-- 85 (158)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC--
Confidence 4468899999999999999999999999999999999887 578889999999999999999999999887643210
Q ss_pred CCCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCC--CCHH
Q psy7068 351 GEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSG--LPVA 427 (487)
Q Consensus 351 g~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~G--L~ee 427 (487)
...+..++.+|+. |.|++|+|+.+||+.++...| ++++
T Consensus 86 ---------------------------------------~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~ 126 (158)
T PTZ00183 86 ---------------------------------------RDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDE 126 (158)
T ss_pred ---------------------------------------CCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHH
Confidence 0112346677776 489999999999999999776 8899
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHH
Q psy7068 428 TLGQIWSLADTDQDGKMNINEFVIACK 454 (487)
Q Consensus 428 eL~~I~~l~D~D~DGkIS~dEFv~aM~ 454 (487)
++..+|..+|.|++|.|+|+||+.+|.
T Consensus 127 ~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 127 ELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 999999999999999999999998873
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.76 E-value=3.3e-17 Score=144.61 Aligned_cols=139 Identities=19% Similarity=0.329 Sum_probs=119.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC--CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCC
Q psy7068 274 WAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGG 351 (487)
Q Consensus 274 w~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sG--L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g 351 (487)
..++++++.+++..|..+|.|++|.|+..|+..++...+ +..+++..+|+.+|.+++|.|+|+||+.++......
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~--- 79 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKD--- 79 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccC---
Confidence 357889999999999999999999999999999998876 467789999999999999999999999887643210
Q ss_pred CCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCC--CCHHH
Q psy7068 352 EKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSG--LPVAT 428 (487)
Q Consensus 352 ~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~G--L~eee 428 (487)
......+..+|+. |.|++|+|+.+||+.++...| ++.++
T Consensus 80 --------------------------------------~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~ 121 (149)
T PTZ00184 80 --------------------------------------TDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEE 121 (149)
T ss_pred --------------------------------------CcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHH
Confidence 0123445667776 489999999999999999776 78899
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHH
Q psy7068 429 LGQIWSLADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 429 L~~I~~l~D~D~DGkIS~dEFv~aM 453 (487)
+..++..+|.+++|.|+|+||+.+|
T Consensus 122 ~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 122 VDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 9999999999999999999999876
No 8
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.73 E-value=3.4e-18 Score=149.08 Aligned_cols=95 Identities=43% Similarity=0.784 Sum_probs=81.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhC--CC
Q psy7068 275 AVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKG--GE 352 (487)
Q Consensus 275 ~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~--g~ 352 (487)
.|+++|+++|.++|+.+|. .+|+|++++++.+|.++||+.+.|.+||+++|.|+||+|+++||+.|||++...++ +.
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~~ 81 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNGK 81 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCCC
Confidence 4788999999999999996 78999999999999999999999999999999999999999999999999987654 46
Q ss_pred CCCCCCCCCCCChhhhhh
Q psy7068 353 KIPVPLPIDMIPPAFRRQ 370 (487)
Q Consensus 353 ~lP~~LP~~LvPps~r~~ 370 (487)
++|..||+.|+|+++|..
T Consensus 82 ~lP~~LP~~L~p~s~~~~ 99 (104)
T PF12763_consen 82 PLPSSLPPSLIPPSKRPL 99 (104)
T ss_dssp ---SSSSGGGSSSCG---
T ss_pred CCchhcCHHHCCCCcccc
Confidence 999999999999999873
No 9
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.70 E-value=3.4e-17 Score=142.75 Aligned_cols=96 Identities=42% Similarity=0.762 Sum_probs=81.1
Q ss_pred cchhHHHHHHHHhhhcCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHHhhc--CCCC
Q psy7068 388 VSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISNKLR--GFDI 465 (487)
Q Consensus 388 ~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~k~~--G~~~ 465 (487)
++++++.+|..+|+...+++|+|++++++.+|.++||+.+.+.+||.++|.|+||+|+++||+.|||||+++++ +.++
T Consensus 4 ls~~e~~~y~~~F~~l~~~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~~~l 83 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDPQDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNGKPL 83 (104)
T ss_dssp -SCCHHHHHHHHHHCTSSSTTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTTS--
T ss_pred CCHHHHHHHHHHHHhcCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCCCCC
Confidence 56789999999999866789999999999999999999999999999999999999999999999999999874 6799
Q ss_pred CCCCChhHHHhhcccccc
Q psy7068 466 PPTLPVSLMQSLAGKDKT 483 (487)
Q Consensus 466 P~sLP~~L~~sl~~~~~~ 483 (487)
|.+||++|+++-++.-+.
T Consensus 84 P~~LP~~L~p~s~~~~~~ 101 (104)
T PF12763_consen 84 PSSLPPSLIPPSKRPLVQ 101 (104)
T ss_dssp -SSSSGGGSSSCG-----
T ss_pred chhcCHHHCCCCcccccc
Confidence 999999999988776543
No 10
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.67 E-value=3.9e-16 Score=132.63 Aligned_cols=95 Identities=41% Similarity=0.774 Sum_probs=91.3
Q ss_pred CCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHHhhcCC
Q psy7068 385 PWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISNKLRGF 463 (487)
Q Consensus 385 ~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~k~~G~ 463 (487)
+|++++++...+.++|.. |+|++|+|+.+||+.+|...|++++++.+||+.+|.+++|.|+|+||+.+|+++.+...|.
T Consensus 1 ~~~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~ 80 (96)
T smart00027 1 DWAISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGY 80 (96)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCC
Confidence 499999999999999998 4999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHhhcc
Q psy7068 464 DIPPTLPVSLMQSLAG 479 (487)
Q Consensus 464 ~~P~sLP~~L~~sl~~ 479 (487)
++|..||++|+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~ 96 (96)
T smart00027 81 PIPASLPPSLIPPSKR 96 (96)
T ss_pred CCCccCCHhhcCCCcC
Confidence 9999999999999875
No 11
>KOG0037|consensus
Probab=99.65 E-value=3.7e-15 Score=143.95 Aligned_cols=141 Identities=17% Similarity=0.336 Sum_probs=128.4
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHc---CCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCC
Q psy7068 283 KYTQLFNTTDRTRSGFLSGPQARNIMVAT---GLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLP 359 (487)
Q Consensus 283 k~~qiF~~lD~D~dG~Is~eELk~~L~~s---GL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP 359 (487)
.+...|..+|+|+.|+|+.+||...|.+. +++.+.++.|+.++|.+++|+|+|+||...+..+.
T Consensus 58 ~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~------------- 124 (221)
T KOG0037|consen 58 QLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN------------- 124 (221)
T ss_pred HHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-------------
Confidence 57889999999999999999999999866 57899999999999999999999999998876444
Q ss_pred CCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHHh
Q psy7068 360 IDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSG--LPVATLGQIWSLA 436 (487)
Q Consensus 360 ~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~G--L~eeeL~~I~~l~ 436 (487)
.+..+|+. |+|++|.|+..||+.+|..+| |+.+.++.|++.+
T Consensus 125 -----------------------------------~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~ky 169 (221)
T KOG0037|consen 125 -----------------------------------QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKY 169 (221)
T ss_pred -----------------------------------HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHh
Confidence 47788987 599999999999999999998 8999999999999
Q ss_pred cCCCCCceeHHHHHHHHHHHHHhhcCCCCCCCCChhHHHhhcccccccC
Q psy7068 437 DTDQDGKMNINEFVIACKLISNKLRGFDIPPTLPVSLMQSLAGKDKTYD 485 (487)
Q Consensus 437 D~D~DGkIS~dEFv~aM~LV~~k~~G~~~P~sLP~~L~~sl~~~~~~~~ 485 (487)
|...+|.|.||+|+.++-.+++ |.+.++++|..++
T Consensus 170 d~~~~g~i~FD~FI~ccv~L~~--------------lt~~Fr~~D~~q~ 204 (221)
T KOG0037|consen 170 DRFGGGRIDFDDFIQCCVVLQR--------------LTEAFRRRDTAQQ 204 (221)
T ss_pred ccccCCceeHHHHHHHHHHHHH--------------HHHHHHHhccccc
Confidence 9877999999999999988888 8899999988765
No 12
>KOG0028|consensus
Probab=99.65 E-value=4e-15 Score=137.75 Aligned_cols=143 Identities=19% Similarity=0.267 Sum_probs=124.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCC--CHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhh
Q psy7068 271 PLEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGL--SQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLA 348 (487)
Q Consensus 271 ~~~w~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL--~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a 348 (487)
.....++++++++++..|..||.+++|+|+.+||+..++..|+ ..+++.++...+|.++.|.|+|++|...|..+...
T Consensus 22 ~~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e 101 (172)
T KOG0028|consen 22 SPKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGE 101 (172)
T ss_pred CCCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhc
Confidence 4566799999999999999999999999999999999999996 57889999999999999999999999988644321
Q ss_pred hCCCCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCC--CC
Q psy7068 349 KGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSG--LP 425 (487)
Q Consensus 349 ~~g~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~G--L~ 425 (487)
.+.+..+..+|+. |.|++|.||..+|+.+...+| ++
T Consensus 102 -----------------------------------------~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenlt 140 (172)
T KOG0028|consen 102 -----------------------------------------RDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLT 140 (172)
T ss_pred -----------------------------------------cCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCcccc
Confidence 1134445556664 579999999999999999887 99
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q psy7068 426 VATLGQIWSLADTDQDGKMNINEFVIACK 454 (487)
Q Consensus 426 eeeL~~I~~l~D~D~DGkIS~dEFv~aM~ 454 (487)
++++.+|+..+|.|+||.|+-+||+.+|.
T Consensus 141 D~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 141 DEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 99999999999999999999999998874
No 13
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.64 E-value=1.5e-15 Score=129.02 Aligned_cols=95 Identities=46% Similarity=0.845 Sum_probs=91.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCC
Q psy7068 273 EWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGE 352 (487)
Q Consensus 273 ~w~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~ 352 (487)
+|.++++++.+|+++|..+|.|++|+|+.+|++.+|+..+++.+++++||..+|.+++|.|+|+||+.+|+.+.+.+.|.
T Consensus 1 ~~~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~ 80 (96)
T smart00027 1 DWAISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGY 80 (96)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCChhh
Q psy7068 353 KIPVPLPIDMIPPAF 367 (487)
Q Consensus 353 ~lP~~LP~~LvPps~ 367 (487)
+||.+||+.++++..
T Consensus 81 ~~~~~~~~~~~~~~~ 95 (96)
T smart00027 81 PIPASLPPSLIPPSK 95 (96)
T ss_pred CCCccCCHhhcCCCc
Confidence 999999999988754
No 14
>KOG0998|consensus
Probab=99.53 E-value=9.5e-15 Score=165.97 Aligned_cols=199 Identities=30% Similarity=0.570 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCC-
Q psy7068 280 SKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPL- 358 (487)
Q Consensus 280 Ek~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~L- 358 (487)
+...|.++|+.+|.+.+|.|++.++..+|..+||+...+.+||...|..+.|.+++.+|..+++++..++++.++....
T Consensus 9 ~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~~ 88 (847)
T KOG0998|consen 9 GQPLFDQYFKSADPQGDGRITGAEAVAFLSKSGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKKV 88 (847)
T ss_pred ccchHHHhhhccCcccCCcccHHHhhhhhhccccchhhhhccccccccccCCccccccccccchHhhhhhcccCcCcccc
Confidence 3467999999999999999999999999999999999999999999999999999999999999999999987655533
Q ss_pred -CCCCCChhhhhhcc---chh-hhhhcccCCCCccchhHHHHHHHHhhhcCCCCCcccHHHHHHHHHhCCCCHHHHHHHH
Q psy7068 359 -PIDMIPPAFRRQRQ---NSV-TLAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIW 433 (487)
Q Consensus 359 -P~~LvPps~r~~~~---ss~-~s~~s~~~d~W~~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~ 433 (487)
+...+++-.+.... ... ......+...|.+++.++.+|..+|+.....+|+++++..+.+|.+.+|+.+.+.+||
T Consensus 89 ~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~~g~~sg~~~~pil~~s~Lp~~~l~~iw 168 (847)
T KOG0998|consen 89 LPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPSNGLLSGDKAKPILLNSKLPSDVLGRIW 168 (847)
T ss_pred ccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCCCCccccchhhhhhhcCCCChhhhcccc
Confidence 44444443322110 111 1114445667999999999999999988888999999999999999999999999999
Q ss_pred HHhcCCCCCceeHHHHHHHHHHHHHhhc--CCCCCCCCChhHHHhhc
Q psy7068 434 SLADTDQDGKMNINEFVIACKLISNKLR--GFDIPPTLPVSLMQSLA 478 (487)
Q Consensus 434 ~l~D~D~DGkIS~dEFv~aM~LV~~k~~--G~~~P~sLP~~L~~sl~ 478 (487)
.++|.|.+|.|++.||..+|||++..++ -+.+|..+|+.++.--+
T Consensus 169 ~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~~p~P~~~p~~lIpps~ 215 (847)
T KOG0998|consen 169 ELSDIDKDGNLDRDEFAVAMHLINDLLNGNSEPVPSRLPPSLIPPSK 215 (847)
T ss_pred ccccccccCCCChhhhhhhhhHHHHHhhcccCCCCccCCcccCCcch
Confidence 9999999999999999999999999998 78888899988855433
No 15
>KOG0030|consensus
Probab=99.53 E-value=1.3e-13 Score=125.35 Aligned_cols=140 Identities=20% Similarity=0.274 Sum_probs=115.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCC--CHHHHHHHHHHhCCC--CCCCccHHHHHHHHHHhHhhhC
Q psy7068 275 AVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGL--SQGILAQIWNLADMD--SDGQLSCDEFVLAMHLCDLAKG 350 (487)
Q Consensus 275 ~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL--~e~eL~~Iw~l~D~D--~DG~LdfeEFl~aM~Lv~~a~~ 350 (487)
..++++..+++++|..||..+||+|++.++.++|+.+|. ++.++.+.....+.+ +-.+|+|++|+..+..+...+.
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 456778899999999999999999999999999999986 578888888777776 4579999999999876664322
Q ss_pred CCCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhhcCCCCCcccHHHHHHHHHhCC--CCHHH
Q psy7068 351 GEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSG--LPVAT 428 (487)
Q Consensus 351 g~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~~~G--L~eee 428 (487)
+. +-++-.+-.+.| |++++|+|...|||++|..+| ++++|
T Consensus 84 q~------------------------------------t~edfvegLrvF--Dkeg~G~i~~aeLRhvLttlGekl~eeE 125 (152)
T KOG0030|consen 84 QG------------------------------------TYEDFVEGLRVF--DKEGNGTIMGAELRHVLTTLGEKLTEEE 125 (152)
T ss_pred cC------------------------------------cHHHHHHHHHhh--cccCCcceeHHHHHHHHHHHHhhccHHH
Confidence 11 223434444555 579999999999999999987 99999
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHH
Q psy7068 429 LGQIWSLADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 429 L~~I~~l~D~D~DGkIS~dEFv~aM 453 (487)
++.++.-.. |.+|.|+|+.|+..+
T Consensus 126 Ve~Llag~e-D~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 126 VEELLAGQE-DSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHcccc-ccCCcCcHHHHHHHH
Confidence 999998775 889999999999765
No 16
>KOG0034|consensus
Probab=99.43 E-value=2.5e-12 Score=123.02 Aligned_cols=137 Identities=23% Similarity=0.361 Sum_probs=107.0
Q ss_pred CCCHHHHHHHHHHHHHhCCC-CCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHhHhhhCCC
Q psy7068 275 AVPHASKLKYTQLFNTTDRT-RSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQ-LSCDEFVLAMHLCDLAKGGE 352 (487)
Q Consensus 275 ~lt~eEk~k~~qiF~~lD~D-~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~-LdfeEFl~aM~Lv~~a~~g~ 352 (487)
.++.+|+..+...|.++|.+ ++|+|+.+|+..+.... . .-...+|++.+|.+++|. |+|+||+..+....-.
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~-~-Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~---- 99 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELA-L-NPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPK---- 99 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHh-c-CcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCC----
Confidence 47789999999999999999 99999999999988332 1 123468999999998888 9999999988644310
Q ss_pred CCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhC---CCC--H
Q psy7068 353 KIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQS---GLP--V 426 (487)
Q Consensus 353 ~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~---GL~--e 426 (487)
...++|.+| +|+. |.+++|+|+.+||..++... +.. +
T Consensus 100 -----------------------------------~~~~~Kl~f--aF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~ 142 (187)
T KOG0034|consen 100 -----------------------------------ASKREKLRF--AFRVYDLDGDGFISREELKQILRMMVGENDDMSD 142 (187)
T ss_pred -----------------------------------ccHHHHHHH--HHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchH
Confidence 012234443 6665 48999999999999999844 344 3
Q ss_pred HH----HHHHHHHhcCCCCCceeHHHHHHHHH
Q psy7068 427 AT----LGQIWSLADTDQDGKMNINEFVIACK 454 (487)
Q Consensus 427 ee----L~~I~~l~D~D~DGkIS~dEFv~aM~ 454 (487)
+. ++.++..+|.|+||+|+|+||..++.
T Consensus 143 e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 143 EQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 33 46678899999999999999999884
No 17
>KOG0044|consensus
Probab=99.42 E-value=3.1e-12 Score=122.84 Aligned_cols=136 Identities=21% Similarity=0.359 Sum_probs=110.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC---CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCC
Q psy7068 275 AVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATG---LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGG 351 (487)
Q Consensus 275 ~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sG---L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g 351 (487)
..++.++.++.+-|..- ..+|.++.++++.++.... -+....+.+|+.+|.|+||.|+|.||+.+++++.+.
T Consensus 22 ~f~~~ei~~~Yr~Fk~~--cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG--- 96 (193)
T KOG0044|consen 22 KFSKKEIQQWYRGFKNE--CPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG--- 96 (193)
T ss_pred CCCHHHHHHHHHHhccc--CCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC---
Confidence 46677888888888773 3599999999999999874 356677889999999999999999999999876641
Q ss_pred CCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhC----C---
Q psy7068 352 EKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQS----G--- 423 (487)
Q Consensus 352 ~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~----G--- 423 (487)
+.+++.++. |+. |.|+||+|+.+|+.++++.. |
T Consensus 97 -------------------------------------t~eekl~w~--F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~ 137 (193)
T KOG0044|consen 97 -------------------------------------TLEEKLKWA--FRLYDLDGDGYITKEEMLKIVQAIYQMTGSKA 137 (193)
T ss_pred -------------------------------------cHHHHhhhh--heeecCCCCceEcHHHHHHHHHHHHHHccccc
Confidence 234555553 665 58999999999999998722 2
Q ss_pred ------CCHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q psy7068 424 ------LPVATLGQIWSLADTDQDGKMNINEFVIACK 454 (487)
Q Consensus 424 ------L~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~ 454 (487)
.+++.++.+|+.+|.|+||.|+++||+.++.
T Consensus 138 ~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 138 LPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred CCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 1356689999999999999999999998773
No 18
>KOG0031|consensus
Probab=99.41 E-value=7.2e-12 Score=115.73 Aligned_cols=135 Identities=17% Similarity=0.327 Sum_probs=114.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC--CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCC
Q psy7068 275 AVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGE 352 (487)
Q Consensus 275 ~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sG--L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~ 352 (487)
.+++.|+++|++.|+.+|.|+||+|+.++|+..|..+| .++++|..+++.+ .|-|+|.-|+..+-. .+.+.
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGe---kL~gt 97 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGE---KLNGT 97 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHH---HhcCC
Confidence 36889999999999999999999999999999999997 4889999999874 579999999887731 11221
Q ss_pred CCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCC--CCHHHH
Q psy7068 353 KIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSG--LPVATL 429 (487)
Q Consensus 353 ~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~G--L~eeeL 429 (487)
+..+.+...|.. |.+++|.|..+.|+++|...| ++++||
T Consensus 98 --------------------------------------dpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV 139 (171)
T KOG0031|consen 98 --------------------------------------DPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEV 139 (171)
T ss_pred --------------------------------------CHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHH
Confidence 123345556665 478999999999999999887 999999
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHH
Q psy7068 430 GQIWSLADTDQDGKMNINEFVIACK 454 (487)
Q Consensus 430 ~~I~~l~D~D~DGkIS~dEFv~aM~ 454 (487)
+.||+.+-.|..|.|+|.+|+.+|.
T Consensus 140 ~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 140 DEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHhCCcccCCceeHHHHHHHHH
Confidence 9999999999999999999998773
No 19
>KOG0036|consensus
Probab=99.41 E-value=3.4e-12 Score=132.79 Aligned_cols=134 Identities=15% Similarity=0.234 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCC---CHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCC
Q psy7068 275 AVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGL---SQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGG 351 (487)
Q Consensus 275 ~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL---~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g 351 (487)
.+.++-..+++.+|+.+|.+++|.|+.+++...|.++.. +.+....++..+|.|.||.+||+||...|.
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~-------- 78 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD-------- 78 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH--------
Confidence 345666678999999999999999999999999988864 356778899999999999999999998774
Q ss_pred CCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCC--CCHHH
Q psy7068 352 EKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSG--LPVAT 428 (487)
Q Consensus 352 ~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~G--L~eee 428 (487)
+.+.++.++|+. |.|+||.|+.+|+.+.|+++| |++++
T Consensus 79 ---------------------------------------~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~ 119 (463)
T KOG0036|consen 79 ---------------------------------------NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEK 119 (463)
T ss_pred ---------------------------------------HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHH
Confidence 122345567776 699999999999999999997 88999
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHH
Q psy7068 429 LGQIWSLADTDQDGKMNINEFVIACKL 455 (487)
Q Consensus 429 L~~I~~l~D~D~DGkIS~dEFv~aM~L 455 (487)
+++++..+|.|+++.|+++||..++.|
T Consensus 120 ~~k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 120 AAKFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred HHHHHHHhccCCCeeeccHHHHhhhhc
Confidence 999999999999999999999987743
No 20
>KOG1955|consensus
Probab=99.40 E-value=4.2e-13 Score=141.44 Aligned_cols=104 Identities=27% Similarity=0.634 Sum_probs=96.8
Q ss_pred cCCCCccchhHHHHHHHHhhhc-CCCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHHhh
Q psy7068 382 AMDPWNVSRHERTRFETHFQAM-KPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISNKL 460 (487)
Q Consensus 382 ~~d~W~~s~edk~~~~~iF~~d-kD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~k~ 460 (487)
-++.|.+++|+|+.|..-|+.. .|-+|+|++.-.+++|.+..|+-.||.+||.+.|.|.||.|+++||..+||||..++
T Consensus 219 ~d~pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRk 298 (737)
T KOG1955|consen 219 LDTPWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARK 298 (737)
T ss_pred cCCccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhheeecc
Confidence 3567999999999999999987 899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChhHHHhhcccccccC
Q psy7068 461 RGFDIPPTLPVSLMQSLAGKDKTYD 485 (487)
Q Consensus 461 ~G~~~P~sLP~~L~~sl~~~~~~~~ 485 (487)
+|+++|.+||.+|+.-+-.....++
T Consensus 299 NgypLPe~LP~~L~P~~lqaa~s~~ 323 (737)
T KOG1955|consen 299 NGYPLPESLPHCLHPNVLQAAASGS 323 (737)
T ss_pred cCCCCCCCCccccChhHhhhhccCC
Confidence 9999999999999987766555544
No 21
>KOG1955|consensus
Probab=99.33 E-value=2.1e-12 Score=136.20 Aligned_cols=99 Identities=31% Similarity=0.576 Sum_probs=95.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhC
Q psy7068 271 PLEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKG 350 (487)
Q Consensus 271 ~~~w~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~ 350 (487)
...|.|++|++++|-+.|+.+-+|-+|+|++.-+++||.+++|+-.+|..||++.|.|+||-|+..||+.+||||..+++
T Consensus 220 d~pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkN 299 (737)
T KOG1955|consen 220 DTPWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKN 299 (737)
T ss_pred CCccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhheeeccc
Confidence 66899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCChhhhh
Q psy7068 351 GEKIPVPLPIDMIPPAFRR 369 (487)
Q Consensus 351 g~~lP~~LP~~LvPps~r~ 369 (487)
+++||+.||..|.|.....
T Consensus 300 gypLPe~LP~~L~P~~lqa 318 (737)
T KOG1955|consen 300 GYPLPESLPHCLHPNVLQA 318 (737)
T ss_pred CCCCCCCCccccChhHhhh
Confidence 9999999999999877655
No 22
>KOG4223|consensus
Probab=99.24 E-value=2.5e-11 Score=123.22 Aligned_cols=133 Identities=21% Similarity=0.338 Sum_probs=105.3
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHcC---CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCC
Q psy7068 283 KYTQLFNTTDRTRSGFLSGPQARNIMVATG---LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLP 359 (487)
Q Consensus 283 k~~qiF~~lD~D~dG~Is~eELk~~L~~sG---L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP 359 (487)
+-++.|+..|.|+||.++.+||..||.--- +..-.|++-+...|.|+||+|+++||+--|+.-.. ++
T Consensus 164 rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~--~~-------- 233 (325)
T KOG4223|consen 164 RDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEG--NE-------- 233 (325)
T ss_pred HHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccC--CC--------
Confidence 346789999999999999999999985432 23445667777899999999999999988863332 11
Q ss_pred CCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhhcCCCCCcccHHHHHHHHHhC--CCCHHHHHHHHHHhc
Q psy7068 360 IDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQS--GLPVATLGQIWSLAD 437 (487)
Q Consensus 360 ~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~~~--GL~eeeL~~I~~l~D 437 (487)
....|+++ ++.+|.... |+|+||+|+.+|++.++.-. ...+.+..+|+-.+|
T Consensus 234 ----------------------~epeWv~~--Ere~F~~~~--DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD 287 (325)
T KOG4223|consen 234 ----------------------EEPEWVLT--EREQFFEFR--DKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEAD 287 (325)
T ss_pred ----------------------CCcccccc--cHHHHHHHh--hcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhc
Confidence 12369887 455555444 68999999999999998844 467889999999999
Q ss_pred CCCCCceeHHHHHH
Q psy7068 438 TDQDGKMNINEFVI 451 (487)
Q Consensus 438 ~D~DGkIS~dEFv~ 451 (487)
.|+||+||++|-+.
T Consensus 288 ~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 288 EDKDGKLSKEEILE 301 (325)
T ss_pred cCccccccHHHHhh
Confidence 99999999999764
No 23
>KOG4223|consensus
Probab=99.18 E-value=2e-10 Score=116.80 Aligned_cols=165 Identities=18% Similarity=0.252 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc--CCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCC
Q psy7068 277 PHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVAT--GLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKI 354 (487)
Q Consensus 277 t~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~s--GL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~l 354 (487)
+.+...++..+|.++|.+++|+|+..|++.++..+ ..-..+..+-|...|.|+||.|+|+||...++-.+. .
T Consensus 72 ~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~------~ 145 (325)
T KOG4223|consen 72 PEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVD------L 145 (325)
T ss_pred cchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhccc------C
Confidence 34466789999999999999999999999998776 234566778889999999999999999998863321 0
Q ss_pred CCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCC---CCHHHHH
Q psy7068 355 PVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSG---LPVATLG 430 (487)
Q Consensus 355 P~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~G---L~eeeL~ 430 (487)
+..-+..-.-..++. ...+-++-|+. |.|+||.++.+||..+|--.. +..-.|+
T Consensus 146 ~~~~~d~e~~~~~~k----------------------m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~ 203 (325)
T KOG4223|consen 146 PDEFPDEEDNEEYKK----------------------MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIA 203 (325)
T ss_pred ccccccchhcHHHHH----------------------HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHH
Confidence 111110000011111 22334456765 699999999999999986332 4445578
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHHHHHHhhcCCCCCCCCCh
Q psy7068 431 QIWSLADTDQDGKMNINEFVIACKLISNKLRGFDIPPTLPV 471 (487)
Q Consensus 431 ~I~~l~D~D~DGkIS~dEFv~aM~LV~~k~~G~~~P~sLP~ 471 (487)
+-+...|+|+||+|+++||+.-|+--.. ++.++==.+|.
T Consensus 204 Etl~d~Dkn~DG~I~~eEfigd~~~~~~--~~~epeWv~~E 242 (325)
T KOG4223|consen 204 ETLEDIDKNGDGKISLEEFIGDLYSHEG--NEEEPEWVLTE 242 (325)
T ss_pred HHHhhcccCCCCceeHHHHHhHHhhccC--CCCCccccccc
Confidence 8888999999999999999998865444 55554445543
No 24
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.12 E-value=2.7e-10 Score=88.66 Aligned_cols=66 Identities=47% Similarity=0.829 Sum_probs=61.7
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhh
Q psy7068 284 YTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAK 349 (487)
Q Consensus 284 ~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~ 349 (487)
|+++|+.+|.|++|+|+.+|++.+|+..|++.+++++||+.+|.+++|.|+|+||+.+|+.+..++
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 66 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALAL 66 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999999999999999999999998877643
No 25
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.03 E-value=6.9e-10 Score=87.07 Aligned_cols=60 Identities=30% Similarity=0.524 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHcCC------CHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q psy7068 283 KYTQLFNTTDRTRSGFLSGPQARNIMVATGL------SQGILAQIWNLADMDSDGQLSCDEFVLAM 342 (487)
Q Consensus 283 k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL------~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM 342 (487)
+++++|+.+|.|++|+|+.+|++.+++..+. .++.+..+|+.+|.|+||.|+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 5889999999999999999999999999974 23566777999999999999999999876
No 26
>KOG0377|consensus
Probab=98.96 E-value=4.3e-09 Score=110.61 Aligned_cols=146 Identities=19% Similarity=0.280 Sum_probs=107.0
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHc---CCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCC
Q psy7068 283 KYTQLFNTTDRTRSGFLSGPQARNIMVAT---GLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLP 359 (487)
Q Consensus 283 k~~qiF~~lD~D~dG~Is~eELk~~L~~s---GL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP 359 (487)
.+..-|+.+|.+..|+|+..+...++.+. ||+...|.. +++..+.||++.|.+.+..+..-..... .-
T Consensus 465 dL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~--kla~~s~d~~v~Y~~~~~~l~~e~~~~e-------a~ 535 (631)
T KOG0377|consen 465 DLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRP--KLANGSDDGKVEYKSTLDNLDTEVILEE-------AG 535 (631)
T ss_pred HHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhh--hccCCCcCcceehHhHHHHhhhhhHHHH-------HH
Confidence 45667888999999999998888888765 677776665 5667777888888887655431110000 00
Q ss_pred CCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHH------hCCCCHHHHHHH
Q psy7068 360 IDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLM------QSGLPVATLGQI 432 (487)
Q Consensus 360 ~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~------~~GL~eeeL~~I 432 (487)
..++...+| .|..++.||+. |+|++|.|+.+||+.+.. +..++++++.++
T Consensus 536 ~slvetLYr-----------------------~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~l 592 (631)
T KOG0377|consen 536 SSLVETLYR-----------------------NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILEL 592 (631)
T ss_pred hHHHHHHHh-----------------------chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHH
Confidence 011111112 24557789987 699999999999999876 223889999999
Q ss_pred HHHhcCCCCCceeHHHHHHHHHHHHHhh
Q psy7068 433 WSLADTDQDGKMNINEFVIACKLISNKL 460 (487)
Q Consensus 433 ~~l~D~D~DGkIS~dEFv~aM~LV~~k~ 460 (487)
-+.+|.|+||+|++.||+.|++|+.+..
T Consensus 593 a~~mD~NkDG~IDlNEfLeAFrlvdr~~ 620 (631)
T KOG0377|consen 593 ARSMDLNKDGKIDLNEFLEAFRLVDRRR 620 (631)
T ss_pred HHhhccCCCCcccHHHHHHHHhhhcchh
Confidence 9999999999999999999999999865
No 27
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.94 E-value=3.3e-09 Score=90.25 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHH-cC--CCH-HHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhh
Q psy7068 279 ASKLKYTQLFNTTDR-TRSGFLSGPQARNIMVA-TG--LSQ-GILAQIWNLADMDSDGQLSCDEFVLAMHLCDLA 348 (487)
Q Consensus 279 eEk~k~~qiF~~lD~-D~dG~Is~eELk~~L~~-sG--L~e-~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a 348 (487)
..+..+..+|+.+|+ +++|+|+..||+.+|.. +| ++. ++++.+++.+|.|+||+|+|+||+..|..+..+
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~ 79 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKA 79 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 456789999999999 99999999999999998 66 666 899999999999999999999999988655443
No 28
>KOG1954|consensus
Probab=98.94 E-value=8.5e-10 Score=114.42 Aligned_cols=97 Identities=40% Similarity=0.713 Sum_probs=91.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhC
Q psy7068 271 PLEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKG 350 (487)
Q Consensus 271 ~~~w~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~ 350 (487)
+..|-++. ++-.|+++|-.+.+ -||+|++..++..|.+++|+...|.+||+++|.|+||.|+-+||..+-|++....+
T Consensus 434 ~~ewvv~~-dk~~yde~fy~l~p-~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala~hli~~kle 511 (532)
T KOG1954|consen 434 EAEWVVSK-DKPTYDEIFYTLSP-VNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKLKLE 511 (532)
T ss_pred ccceeeec-CCcchHhhhhcccc-cCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHHHheecc
Confidence 67788765 56689999999977 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCChhhhh
Q psy7068 351 GEKIPVPLPIDMIPPAFRR 369 (487)
Q Consensus 351 g~~lP~~LP~~LvPps~r~ 369 (487)
|+++|.+||++|+||++|.
T Consensus 512 ghelp~~lp~hl~pps~r~ 530 (532)
T KOG1954|consen 512 GHELPSELPKHLVPPSKRG 530 (532)
T ss_pred cccCccccCcccCCccccc
Confidence 9999999999999999986
No 29
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.93 E-value=3.3e-09 Score=82.54 Aligned_cols=65 Identities=45% Similarity=0.780 Sum_probs=59.1
Q ss_pred HHHhhh-cCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHHhhc
Q psy7068 397 ETHFQA-MKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISNKLR 461 (487)
Q Consensus 397 ~~iF~~-dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~k~~ 461 (487)
+++|+. |+|++|+|+.+|++.+|...|++++++.+||+.+|.+++|.|+|+||+.+|+.+..+.+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 67 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 456665 58999999999999999999999999999999999999999999999999999988753
No 30
>KOG0027|consensus
Probab=98.92 E-value=1.4e-08 Score=92.92 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHH
Q psy7068 315 QGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERT 394 (487)
Q Consensus 315 e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~ 394 (487)
..++.++|..+|.|++|.|+.+|+..+|+..... . ...
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~---------------------------------------~---t~~ 44 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQN---------------------------------------P---TEE 44 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCC---------------------------------------C---CHH
Confidence 3568899999999999999999999999755431 1 233
Q ss_pred HHHHHhhh-cCCCCCcccHHHHHHHHHhCCC-------CHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHHhhcCCCCC
Q psy7068 395 RFETHFQA-MKPVNGIVTGDQVKGFLMQSGL-------PVATLGQIWSLADTDQDGKMNINEFVIACKLISNKLRGFDIP 466 (487)
Q Consensus 395 ~~~~iF~~-dkD~DG~IS~eELr~vL~~~GL-------~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~k~~G~~~P 466 (487)
.+..++.. +.|++|.|+..||..++...+. ..+++.++|+.+|.|+||.|+.+||..+|.-+-.+..
T Consensus 45 el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~----- 119 (151)
T KOG0027|consen 45 ELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLT----- 119 (151)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCC-----
Confidence 45556655 5899999999999999986542 2458999999999999999999999999855444333
Q ss_pred CCCChhHHHhhcccccccC
Q psy7068 467 PTLPVSLMQSLAGKDKTYD 485 (487)
Q Consensus 467 ~sLP~~L~~sl~~~~~~~~ 485 (487)
..++...++..|.+.|
T Consensus 120 ---~~e~~~mi~~~d~d~d 135 (151)
T KOG0027|consen 120 ---DEECKEMIREVDVDGD 135 (151)
T ss_pred ---HHHHHHHHHhcCCCCC
Confidence 5566666666666554
No 31
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.85 E-value=1.2e-08 Score=79.98 Aligned_cols=59 Identities=25% Similarity=0.438 Sum_probs=50.1
Q ss_pred HHHHHhhh-cCCCCCcccHHHHHHHHHhCCC--CH----HHHHHHHHHhcCCCCCceeHHHHHHHH
Q psy7068 395 RFETHFQA-MKPVNGIVTGDQVKGFLMQSGL--PV----ATLGQIWSLADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 395 ~~~~iF~~-dkD~DG~IS~eELr~vL~~~GL--~e----eeL~~I~~l~D~D~DGkIS~dEFv~aM 453 (487)
+++++|+. |+|++|+|+.+||+.++...+. .+ +.+..+|+.+|.|+||.|+++||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 35677876 5999999999999999998873 24 445667999999999999999999886
No 32
>PLN02964 phosphatidylserine decarboxylase
Probab=98.84 E-value=2.5e-08 Score=110.71 Aligned_cols=105 Identities=23% Similarity=0.257 Sum_probs=84.2
Q ss_pred CCCC-CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCC---CHHH---HHHHHHHhCCCCCCCccHHHHHHHHH
Q psy7068 271 PLEW-AVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGL---SQGI---LAQIWNLADMDSDGQLSCDEFVLAMH 343 (487)
Q Consensus 271 ~~~w-~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL---~e~e---L~~Iw~l~D~D~DG~LdfeEFl~aM~ 343 (487)
+.+| .++.+|++++++.|+.+|+|++|+| +..+++..|. ++++ ++++|+.+|.|+||.|+|+||+.+|.
T Consensus 131 e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~ 206 (644)
T PLN02964 131 ELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIK 206 (644)
T ss_pred eecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 3445 5788899999999999999999997 8888888883 3444 78999999999999999999999886
Q ss_pred HhHhhhCCCCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHh
Q psy7068 344 LCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQ 421 (487)
Q Consensus 344 Lv~~a~~g~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~ 421 (487)
.... . ...+.+.++|+. |+|++|+|+.+||+++|..
T Consensus 207 ~lg~-----~-------------------------------------~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 207 AFGN-----L-------------------------------------VAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred Hhcc-----C-------------------------------------CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 3211 0 122345666665 5899999999999999987
No 33
>KOG0044|consensus
Probab=98.80 E-value=3e-08 Score=95.56 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=85.2
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHc--CCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCC
Q psy7068 282 LKYTQLFNTTDRTRSGFLSGPQARNIMVAT--GLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLP 359 (487)
Q Consensus 282 ~k~~qiF~~lD~D~dG~Is~eELk~~L~~s--GL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP 359 (487)
...+.+|+.+|.|+||.|+..|+...|... |-.++-++-.|+++|.|+||.|+++|++.++..++........|
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~---- 139 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALP---- 139 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCC----
Confidence 345779999999999999999988887665 55677788889999999999999999999998887655432211
Q ss_pred CCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHH
Q psy7068 360 IDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLM 420 (487)
Q Consensus 360 ~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~ 420 (487)
.....-+.+..++|.+ |+|+||.||.+|+.+...
T Consensus 140 ---------------------------~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 140 ---------------------------EDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred ---------------------------cccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 0011235567789987 599999999999998876
No 34
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.80 E-value=2.9e-08 Score=84.03 Aligned_cols=69 Identities=14% Similarity=0.270 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-----cC--CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHh
Q psy7068 279 ASKLKYTQLFNTTD-RTRSG-FLSGPQARNIMVA-----TG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDL 347 (487)
Q Consensus 279 eEk~k~~qiF~~lD-~D~dG-~Is~eELk~~L~~-----sG--L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~ 347 (487)
.-+..+.++|+.+| +|++| +|+.+||+.+|+. .| .++++++++++.+|.|+||+|+|+||+..+..+..
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 44678999999998 79999 5999999999998 66 47888999999999999999999999988754443
No 35
>PTZ00183 centrin; Provisional
Probab=98.79 E-value=6.8e-08 Score=86.56 Aligned_cols=99 Identities=16% Similarity=0.278 Sum_probs=78.4
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHH
Q psy7068 316 GILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTR 395 (487)
Q Consensus 316 ~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~ 395 (487)
.++..+|..+|.|++|.|+++||..++..+.. . . ....
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~-----~----------------------------------~---~~~~ 54 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGF-----E----------------------------------P---KKEE 54 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC-----C----------------------------------C---CHHH
Confidence 46778899999999999999999998864421 0 0 1123
Q ss_pred HHHHhhh-cCCCCCcccHHHHHHHHHh---CCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHH
Q psy7068 396 FETHFQA-MKPVNGIVTGDQVKGFLMQ---SGLPVATLGQIWSLADTDQDGKMNINEFVIACKLI 456 (487)
Q Consensus 396 ~~~iF~~-dkD~DG~IS~eELr~vL~~---~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV 456 (487)
...+|.. +.|++|.|+.+||..++.. ....++.++.+|+.+|.+++|.|+++||..++..+
T Consensus 55 ~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 55 IKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 5556655 5899999999999998764 23567889999999999999999999999988543
No 36
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.75 E-value=2.9e-08 Score=84.46 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=58.2
Q ss_pred HHHHHHhhhc-C-CCCCcccHHHHHHHHHh-CC--CCH-HHHHHHHHHhcCCCCCceeHHHHHHHHHHHHHhhc
Q psy7068 394 TRFETHFQAM-K-PVNGIVTGDQVKGFLMQ-SG--LPV-ATLGQIWSLADTDQDGKMNINEFVIACKLISNKLR 461 (487)
Q Consensus 394 ~~~~~iF~~d-k-D~DG~IS~eELr~vL~~-~G--L~e-eeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~k~~ 461 (487)
..+.++|+.+ + |++|+|+..||+.+|.+ .| +++ +++++|++.+|.|+||.|+|+||+.+|.-+-.+..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~~ 81 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAVK 81 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4566788874 7 99999999999999998 76 777 89999999999999999999999998876655443
No 37
>PTZ00184 calmodulin; Provisional
Probab=98.72 E-value=1.5e-07 Score=82.95 Aligned_cols=98 Identities=13% Similarity=0.186 Sum_probs=76.4
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHH
Q psy7068 316 GILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTR 395 (487)
Q Consensus 316 ~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~ 395 (487)
+.+..+|..+|.|++|.|+++||..+++.+.. . .. ...
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~-----~----------------------------------~~---~~~ 48 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQ-----N----------------------------------PT---EAE 48 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCC-----C----------------------------------CC---HHH
Confidence 45678899999999999999999988753321 0 01 123
Q ss_pred HHHHhhh-cCCCCCcccHHHHHHHHHhC---CCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHH
Q psy7068 396 FETHFQA-MKPVNGIVTGDQVKGFLMQS---GLPVATLGQIWSLADTDQDGKMNINEFVIACKL 455 (487)
Q Consensus 396 ~~~iF~~-dkD~DG~IS~eELr~vL~~~---GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~L 455 (487)
...+|.. +.+++|.|+.+||..++... ....+.+..+|+.+|.+++|.|+.+||..++..
T Consensus 49 ~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 49 LQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 4556665 47999999999999988743 345577899999999999999999999888854
No 38
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.71 E-value=6.4e-08 Score=81.64 Aligned_cols=68 Identities=16% Similarity=0.318 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhC-CCCCCc-ccHHHHHHHHHH-cC------CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhh
Q psy7068 281 KLKYTQLFNTTD-RTRSGF-LSGPQARNIMVA-TG------LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLA 348 (487)
Q Consensus 281 k~k~~qiF~~lD-~D~dG~-Is~eELk~~L~~-sG------L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a 348 (487)
...++++|+.+| +|++|+ |+..|++.+|+. .| .+..++++|++.+|.|++|.|+|+||+.+|..+..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~ 84 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVA 84 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHH
Confidence 467899999997 999995 999999999986 43 368899999999999999999999999988665543
No 39
>KOG1954|consensus
Probab=98.71 E-value=1.3e-08 Score=105.67 Aligned_cols=97 Identities=36% Similarity=0.680 Sum_probs=89.1
Q ss_pred CCCCccchhHHHHHHHHhhhcCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHHhhcC
Q psy7068 383 MDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISNKLRG 462 (487)
Q Consensus 383 ~d~W~~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~k~~G 462 (487)
..+|+++ .++-.|.++|.+...-||+|++...++.|.++.|+...+-+||+++|.|.||.++-+||+.+-|||+.|++|
T Consensus 434 ~~ewvv~-~dk~~yde~fy~l~p~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala~hli~~kleg 512 (532)
T KOG1954|consen 434 EAEWVVS-KDKPTYDEIFYTLSPVNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKLKLEG 512 (532)
T ss_pred ccceeee-cCCcchHhhhhcccccCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHHHheeccc
Confidence 4579887 567789999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChhHHHhhccc
Q psy7068 463 FDIPPTLPVSLMQSLAGK 480 (487)
Q Consensus 463 ~~~P~sLP~~L~~sl~~~ 480 (487)
.++|..||..|+.--+++
T Consensus 513 help~~lp~hl~pps~r~ 530 (532)
T KOG1954|consen 513 HELPSELPKHLVPPSKRG 530 (532)
T ss_pred ccCccccCcccCCccccc
Confidence 999999999998755544
No 40
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.70 E-value=9.1e-08 Score=81.49 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhC-CCCCC-cccHHHHHHHHHHc------C-CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhH
Q psy7068 280 SKLKYTQLFNTTD-RTRSG-FLSGPQARNIMVAT------G-LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCD 346 (487)
Q Consensus 280 Ek~k~~qiF~~lD-~D~dG-~Is~eELk~~L~~s------G-L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~ 346 (487)
-+..+.++|..+| .|++| +|+.+||+.+|+.. + .+..++++|++.+|.|+||.|+|+||+..|..+.
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 3467888999999 78998 59999999999762 1 3677899999999999999999999999885444
No 41
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.70 E-value=9.7e-08 Score=79.46 Aligned_cols=68 Identities=15% Similarity=0.241 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhCC--CCCCcccHHHHHHHHHH-cC--C----CHHHHHHHHHHhCCCCCCCccHHHHHHHHHHh
Q psy7068 278 HASKLKYTQLFNTTDR--TRSGFLSGPQARNIMVA-TG--L----SQGILAQIWNLADMDSDGQLSCDEFVLAMHLC 345 (487)
Q Consensus 278 ~eEk~k~~qiF~~lD~--D~dG~Is~eELk~~L~~-sG--L----~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv 345 (487)
+++++.++.+|..+|+ |++|+|+.+|++.+++. .| + +..++.+||..+|.+++|.|+|+||+..|...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5678889999999999 89999999999999976 34 2 48899999999999999999999999887543
No 42
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.66 E-value=6.5e-08 Score=90.67 Aligned_cols=64 Identities=22% Similarity=0.410 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC--CCHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q psy7068 279 ASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342 (487)
Q Consensus 279 eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sG--L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM 342 (487)
...++++..|+.||+|++|+|+..+++.+|..+| +++++++.+++.+|.|+||.|+|+||+..+
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 3467899999999999999999999999999986 799999999999999999999999999876
No 43
>KOG0037|consensus
Probab=98.64 E-value=2.3e-07 Score=90.32 Aligned_cols=121 Identities=15% Similarity=0.193 Sum_probs=89.2
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCCC
Q psy7068 283 KYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDM 362 (487)
Q Consensus 283 k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~L 362 (487)
-.+.+-..||.|++|+|+.+|++.+.+.+ ...+.+|+.+|+|+.|+|+..|+..|+......
T Consensus 95 TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i----~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~-------------- 156 (221)
T KOG0037|consen 95 TCRLMISMFDRDNSGTIGFKEFKALWKYI----NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYR-------------- 156 (221)
T ss_pred HHHHHHHHhcCCCCCccCHHHHHHHHHHH----HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcC--------------
Confidence 34566666788999999999999888776 367889999999999999999999888654431
Q ss_pred CChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhhcC-CCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhcCCCC
Q psy7068 363 IPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMK-PVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQD 441 (487)
Q Consensus 363 vPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~dk-D~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D~D 441 (487)
++++ .+..+++++. -++|.|..+++.+.+..+ ..+-+.|+..|.+++
T Consensus 157 -------------------------Lspq---~~~~lv~kyd~~~~g~i~FD~FI~ccv~L----~~lt~~Fr~~D~~q~ 204 (221)
T KOG0037|consen 157 -------------------------LSPQ---FYNLLVRKYDRFGGGRIDFDDFIQCCVVL----QRLTEAFRRRDTAQQ 204 (221)
T ss_pred -------------------------CCHH---HHHHHHHHhccccCCceeHHHHHHHHHHH----HHHHHHHHHhccccc
Confidence 2222 2344555543 348999999988887743 235667899999999
Q ss_pred Cc--eeHHHHHHHH
Q psy7068 442 GK--MNINEFVIAC 453 (487)
Q Consensus 442 Gk--IS~dEFv~aM 453 (487)
|. |+|++|+.+.
T Consensus 205 G~i~~~y~dfl~~t 218 (221)
T KOG0037|consen 205 GSITISYDDFLQMT 218 (221)
T ss_pred eeEEEeHHHHHHHh
Confidence 85 7889998754
No 44
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.64 E-value=1.7e-07 Score=79.44 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhCC-CC-CCcccHHHHHHHHHH-----c--CCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhH
Q psy7068 280 SKLKYTQLFNTTDR-TR-SGFLSGPQARNIMVA-----T--GLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCD 346 (487)
Q Consensus 280 Ek~k~~qiF~~lD~-D~-dG~Is~eELk~~L~~-----s--GL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~ 346 (487)
....++++|+.+|. |+ +|+|+.+|++.+|+. . .+++++++.+++.+|.|++|.|+|+||+.+|....
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 35678999999997 97 699999999999986 2 35788999999999999999999999998875444
No 45
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.63 E-value=1.9e-07 Score=79.35 Aligned_cols=70 Identities=20% Similarity=0.278 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHH-hCCCCCC-cccHHHHHHHHHHc-------CCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHh
Q psy7068 278 HASKLKYTQLFNT-TDRTRSG-FLSGPQARNIMVAT-------GLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDL 347 (487)
Q Consensus 278 ~eEk~k~~qiF~~-lD~D~dG-~Is~eELk~~L~~s-------GL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~ 347 (487)
+..+..+..+|+. +|+|++| +|+.+||+.+|... .....+++++|+.+|.|+||.|+|+||+..|..+..
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 3456788999999 8888886 99999999999875 356789999999999999999999999988865543
No 46
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.63 E-value=1.7e-07 Score=79.43 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhCC-CC-CCcccHHHHHHHHHH---cC--CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHh
Q psy7068 279 ASKLKYTQLFNTTDR-TR-SGFLSGPQARNIMVA---TG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDL 347 (487)
Q Consensus 279 eEk~k~~qiF~~lD~-D~-dG~Is~eELk~~L~~---sG--L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~ 347 (487)
+.+..+-.+|.++|. |+ +|+|+.+||+.+|.+ .| ++++++.++|+.+|.|++|+|+|+||+..|..+..
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 445677889999998 67 899999999999974 34 68999999999999999999999999988865443
No 47
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.55 E-value=2.8e-07 Score=82.16 Aligned_cols=65 Identities=23% Similarity=0.300 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q psy7068 276 VPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAM 342 (487)
Q Consensus 276 lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM 342 (487)
+.+..+.++...|..+|.|+||+|+.+||..++ +...+..+..+|+.+|.|+||.|+++||..++
T Consensus 42 ~~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 42 LYPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hhHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 356788899999999999999999999999887 55567788999999999999999999999988
No 48
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.51 E-value=3.2e-07 Score=69.53 Aligned_cols=49 Identities=24% Similarity=0.460 Sum_probs=44.9
Q ss_pred CCCcccHHHHHHHHHhCC---CCHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q psy7068 406 VNGIVTGDQVKGFLMQSG---LPVATLGQIWSLADTDQDGKMNINEFVIACK 454 (487)
Q Consensus 406 ~DG~IS~eELr~vL~~~G---L~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~ 454 (487)
++|+|+.+||+.+|...| ++++++..||+.+|.|+||.|+|+||+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 479999999999998654 7899999999999999999999999999874
No 49
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.50 E-value=5e-07 Score=76.54 Aligned_cols=65 Identities=12% Similarity=0.258 Sum_probs=55.4
Q ss_pred HHHHHHhhh-c-CCCCC-cccHHHHHHHHHh-----CC--CCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHH
Q psy7068 394 TRFETHFQA-M-KPVNG-IVTGDQVKGFLMQ-----SG--LPVATLGQIWSLADTDQDGKMNINEFVIACKLISN 458 (487)
Q Consensus 394 ~~~~~iF~~-d-kD~DG-~IS~eELr~vL~~-----~G--L~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~ 458 (487)
..+.++|+. + +|++| +|+..||+.+|+. .| .++++++++++.+|.|+||.|+|+||+.++.-+-.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 356678877 4 68999 5999999999998 66 67888999999999999999999999988865543
No 50
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.48 E-value=5.4e-07 Score=66.57 Aligned_cols=59 Identities=24% Similarity=0.429 Sum_probs=54.0
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHcC--CCHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q psy7068 284 YTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342 (487)
Q Consensus 284 ~~qiF~~lD~D~dG~Is~eELk~~L~~sG--L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM 342 (487)
+..+|+.+|.|++|.|+..|+..+++..+ .+.+.+..+|..+|.+++|.|+++||+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 57889999999999999999999999986 578889999999999999999999998754
No 51
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.46 E-value=6.3e-07 Score=76.33 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=52.2
Q ss_pred HHHHHHhhh-c-CCCCC-cccHHHHHHHHHhC------C-CCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHH
Q psy7068 394 TRFETHFQA-M-KPVNG-IVTGDQVKGFLMQS------G-LPVATLGQIWSLADTDQDGKMNINEFVIACKLI 456 (487)
Q Consensus 394 ~~~~~iF~~-d-kD~DG-~IS~eELr~vL~~~------G-L~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV 456 (487)
..+.++|.. + +|++| +|+.+||+.+|.+. + ..+.++++|++.+|.|+||.|+|+||+.+|.-+
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 345667887 3 78998 59999999999752 2 467889999999999999999999999988644
No 52
>KOG0028|consensus
Probab=98.46 E-value=1.4e-06 Score=81.44 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=78.0
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHH
Q psy7068 316 GILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTR 395 (487)
Q Consensus 316 ~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~ 395 (487)
++++..|.++|.+++|.|+++|+.++|...... + .+..
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE---------------------------------------~---~k~e 70 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFE---------------------------------------P---KKEE 70 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCC---------------------------------------c---chHH
Confidence 568889999999999999999999999755431 1 1223
Q ss_pred HHHHhh-hcCCCCCcccHHHHHHHHHh-C--CCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHH
Q psy7068 396 FETHFQ-AMKPVNGIVTGDQVKGFLMQ-S--GLPVATLGQIWSLADTDQDGKMNINEFVIACKL 455 (487)
Q Consensus 396 ~~~iF~-~dkD~DG~IS~eELr~vL~~-~--GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~L 455 (487)
+.++.. .++++.|+|+.++|+.++.. . +-+.++|...|+++|.|.+|+||..+|...+.-
T Consensus 71 i~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvake 134 (172)
T KOG0028|consen 71 ILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKE 134 (172)
T ss_pred HHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHH
Confidence 333332 35889999999999999872 2 358899999999999999999999999987743
No 53
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.45 E-value=9.3e-07 Score=74.90 Aligned_cols=64 Identities=16% Similarity=0.280 Sum_probs=53.8
Q ss_pred HHHHHhhhc--CCC-CCcccHHHHHHHHHh---CC--CCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHH
Q psy7068 395 RFETHFQAM--KPV-NGIVTGDQVKGFLMQ---SG--LPVATLGQIWSLADTDQDGKMNINEFVIACKLISN 458 (487)
Q Consensus 395 ~~~~iF~~d--kD~-DG~IS~eELr~vL~~---~G--L~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~ 458 (487)
.+-.+|.++ +|+ +|+|+.+||+++|.+ .| ++++++.+||+.+|.|+||+|+|+||+.+|.-+-.
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 455778875 477 899999999999963 45 78999999999999999999999999988865543
No 54
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.44 E-value=9.2e-07 Score=75.14 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=54.6
Q ss_pred HHHHHHhhh-c-CCCCC-cccHHHHHHHHHhC-------CCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHH
Q psy7068 394 TRFETHFQA-M-KPVNG-IVTGDQVKGFLMQS-------GLPVATLGQIWSLADTDQDGKMNINEFVIACKLISN 458 (487)
Q Consensus 394 ~~~~~iF~~-d-kD~DG-~IS~eELr~vL~~~-------GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~ 458 (487)
..+..+|.. + +|++| +|+.+||+.+|... ...+.++++||+.+|.|+||.|+|+||+.+|.-|-.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 456678887 3 77876 99999999999865 366789999999999999999999999998865543
No 55
>KOG0041|consensus
Probab=98.41 E-value=7.3e-07 Score=86.09 Aligned_cols=71 Identities=25% Similarity=0.355 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHH--HHHHHHHHhCCCCCCCccHHHHHHHHHHhH
Q psy7068 276 VPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQG--ILAQIWNLADMDSDGQLSCDEFVLAMHLCD 346 (487)
Q Consensus 276 lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~--eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~ 346 (487)
.+..+++.+..+|+.+|.|.||+|+..||+.+|.++|.++. -++.+++.+|.|.||+|+|.||+.+++.+.
T Consensus 93 FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 93 FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 67889999999999999999999999999999999998765 467899999999999999999999887554
No 56
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.38 E-value=9.1e-07 Score=74.61 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=53.8
Q ss_pred HHHHHHhhh-c-CCCCCc-ccHHHHHHHHHh-CC------CCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHH
Q psy7068 394 TRFETHFQA-M-KPVNGI-VTGDQVKGFLMQ-SG------LPVATLGQIWSLADTDQDGKMNINEFVIACKLISN 458 (487)
Q Consensus 394 ~~~~~iF~~-d-kD~DG~-IS~eELr~vL~~-~G------L~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~ 458 (487)
..+.++|+. | +|++|+ |+..||+.+|.. .| .+++++++|++.+|.|++|.|+|+||+.+|..+--
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~ 83 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHH
Confidence 346667775 4 899995 999999999975 43 36889999999999999999999999998865543
No 57
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.36 E-value=1.2e-06 Score=66.35 Aligned_cols=49 Identities=29% Similarity=0.495 Sum_probs=45.0
Q ss_pred CCCcccHHHHHHHHHHcC---CCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q psy7068 295 RSGFLSGPQARNIMVATG---LSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343 (487)
Q Consensus 295 ~dG~Is~eELk~~L~~sG---L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~ 343 (487)
.+|+|+.++|+.+|...| ++.+++..||..+|.|++|.|+|+||+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 479999999999997764 7899999999999999999999999999885
No 58
>PLN02964 phosphatidylserine decarboxylase
Probab=98.35 E-value=1.6e-06 Score=96.54 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=93.2
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHH--cCCC---HHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCC
Q psy7068 287 LFNTTDRTRSGFLSGPQARNIMVA--TGLS---QGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPID 361 (487)
Q Consensus 287 iF~~lD~D~dG~Is~eELk~~L~~--sGL~---e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~ 361 (487)
.|..+|. ..++.+++...-.. ..+. .+++.+.|+++|.|+||.+ ....+.++ .. ..
T Consensus 112 ~~~~~~~---~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrsl---G~----~~-------- 172 (644)
T PLN02964 112 RISVFET---NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSC---SI----ED-------- 172 (644)
T ss_pred EEEEEec---CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHh---CC----CC--------
Confidence 5666776 44556655544332 2232 3567778899999999997 22222221 10 00
Q ss_pred CCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHHhcC
Q psy7068 362 MIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSG--LPVATLGQIWSLADT 438 (487)
Q Consensus 362 LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~G--L~eeeL~~I~~l~D~ 438 (487)
.+.+++..+.++|.. |.|++|.|+.+||..++...+ .+++++.++|+.+|.
T Consensus 173 --------------------------pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDk 226 (644)
T PLN02964 173 --------------------------PVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADL 226 (644)
T ss_pred --------------------------CCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCC
Confidence 122333346677765 589999999999999999776 778899999999999
Q ss_pred CCCCceeHHHHHHHHHHHHHhhcCCCCCCCCChhH
Q psy7068 439 DQDGKMNINEFVIACKLISNKLRGFDIPPTLPVSL 473 (487)
Q Consensus 439 D~DGkIS~dEFv~aM~LV~~k~~G~~~P~sLP~~L 473 (487)
|+||.|+++||..+|...+. +...=...|.+-
T Consensus 227 DgdG~Is~dEL~~vL~~~~~---~~~~~~~cp~cg 258 (644)
T PLN02964 227 NGDGVVTIDELAALLALQQE---QEPIINNCPVCG 258 (644)
T ss_pred CCCCcCCHHHHHHHHHhccc---Ccchhhhchhhc
Confidence 99999999999988865432 334344455444
No 59
>KOG2643|consensus
Probab=98.34 E-value=2.7e-06 Score=89.94 Aligned_cols=156 Identities=16% Similarity=0.197 Sum_probs=93.2
Q ss_pred hCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCCCCChhhhhh
Q psy7068 291 TDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQ 370 (487)
Q Consensus 291 lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~LvPps~r~~ 370 (487)
|-+|++|+++.+|+.++++++ .++.++-=|..+|....|.|+-.+|...|-.......... ...+-..+++
T Consensus 295 FG~rg~~kLs~deF~~F~e~L--q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k------~~~lkrvk~k- 365 (489)
T KOG2643|consen 295 FGKRGNGKLSIDEFLKFQENL--QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKK------HKYLKRVKEK- 365 (489)
T ss_pred hccCCCccccHHHHHHHHHHH--HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhH------HHHHHHHHHh-
Confidence 567788888888888887765 2444445566777777778887777765522111000000 0000000000
Q ss_pred ccchhhhhhcccCCCCccchhHHHHHHHHhhh----------cCCCCCcccHHHHHHHHHhC-C--CCHHHHHHHHHHhc
Q psy7068 371 RQNSVTLAANVAMDPWNVSRHERTRFETHFQA----------MKPVNGIVTGDQVKGFLMQS-G--LPVATLGQIWSLAD 437 (487)
Q Consensus 371 ~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~----------dkD~DG~IS~eELr~vL~~~-G--L~eeeL~~I~~l~D 437 (487)
-..+.-.++-.+-..|.++... +..-.+-|+..+|+++.... | |++..++-+|..+|
T Consensus 366 ----------f~~~~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD 435 (489)
T KOG2643|consen 366 ----------FKDDGKGISLQEFKAFFRFLNNLNDFDIALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFD 435 (489)
T ss_pred ----------ccCCCCCcCHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEc
Confidence 0111122332232222221111 13456789999999988744 4 77778899999999
Q ss_pred CCCCCceeHHHHHHHHHHHHHhhcCCCCCC
Q psy7068 438 TDQDGKMNINEFVIACKLISNKLRGFDIPP 467 (487)
Q Consensus 438 ~D~DGkIS~dEFv~aM~LV~~k~~G~~~P~ 467 (487)
.|+||.|+++||+..|+ ++-+.|.++|.
T Consensus 436 ~N~Dg~LS~~EFl~Vmk--~Rmhrgl~~p~ 463 (489)
T KOG2643|consen 436 ENNDGTLSHKEFLAVMK--RRMHRGLELPK 463 (489)
T ss_pred cCCCCcccHHHHHHHHH--HHhhccccCCc
Confidence 99999999999999884 34447888887
No 60
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.34 E-value=2.7e-06 Score=70.73 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=55.5
Q ss_pred hHHHHHHHHhhh-cC--CCCCcccHHHHHHHHHh-CC--C----CHHHHHHHHHHhcCCCCCceeHHHHHHHHHHH
Q psy7068 391 HERTRFETHFQA-MK--PVNGIVTGDQVKGFLMQ-SG--L----PVATLGQIWSLADTDQDGKMNINEFVIACKLI 456 (487)
Q Consensus 391 edk~~~~~iF~~-dk--D~DG~IS~eELr~vL~~-~G--L----~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV 456 (487)
++...+.++|.. |+ |++|+|+.+||+.++.. .| + .+.++..||+.+|.+++|.|+|+||+.+|.-+
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 455667888887 46 79999999999999975 34 3 48899999999999999999999999877544
No 61
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.32 E-value=2.2e-06 Score=72.68 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=52.7
Q ss_pred HHHHHHHhhhc-C-CC-CCcccHHHHHHHHHh-----C--CCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHH
Q psy7068 393 RTRFETHFQAM-K-PV-NGIVTGDQVKGFLMQ-----S--GLPVATLGQIWSLADTDQDGKMNINEFVIACKL 455 (487)
Q Consensus 393 k~~~~~iF~~d-k-D~-DG~IS~eELr~vL~~-----~--GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~L 455 (487)
...+.++|..+ . |+ +|+|+.+||+.+|.. . .++++++..|++.+|.|+||.|+|+||+.+|.-
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 34567788764 4 86 699999999999985 2 367899999999999999999999999987753
No 62
>KOG4251|consensus
Probab=98.28 E-value=1.4e-06 Score=86.48 Aligned_cols=149 Identities=19% Similarity=0.288 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc---CC--CHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCC
Q psy7068 277 PHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVAT---GL--SQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGG 351 (487)
Q Consensus 277 t~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~s---GL--~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g 351 (487)
+...+.++..+|.+.|.|-||+|+..|++.++++- .+ ..++-+..|+.+|.|+||.|.|+||..-+.. ..+
T Consensus 96 prrsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla----skg 171 (362)
T KOG4251|consen 96 PRRSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA----SKG 171 (362)
T ss_pred hhHHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh----hcC
Confidence 44567899999999999999999999998877553 12 2344556788899999999999999754321 111
Q ss_pred CCCCCCCCCCCCChhhhhhccchhhhhhcccCCC-CccchhHHHHHHHHhhhcCCCCC---------cccHHHHHHHHH-
Q psy7068 352 EKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDP-WNVSRHERTRFETHFQAMKPVNG---------IVTGDQVKGFLM- 420 (487)
Q Consensus 352 ~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~-W~~s~edk~~~~~iF~~dkD~DG---------~IS~eELr~vL~- 420 (487)
.. .-.+...+.+++ --+..+.+...+ .++|.+| .++..|+..+|-
T Consensus 172 hs--------------------ekevadairlneelkVDeEtqevle----nlkdRwyqaDsppadlllteeEflsFLHP 227 (362)
T KOG4251|consen 172 HS--------------------EKEVADAIRLNEELKVDEETQEVLE----NLKDRWYQADSPPADLLLTEEEFLSFLHP 227 (362)
T ss_pred cc--------------------hHHHHHHhhccCcccccHHHHHHHH----hhhhhhccccCchhhhhhhHHHHHHHcCh
Confidence 00 000000111110 011111221111 2334444 455588888875
Q ss_pred --hCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q psy7068 421 --QSGLPVATLGQIWSLADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 421 --~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM 453 (487)
..|.-..-+++|++.+|.|+|..++-.||+...
T Consensus 228 EhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislp 262 (362)
T KOG4251|consen 228 EHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLP 262 (362)
T ss_pred HhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCC
Confidence 335555678999999999999999999998754
No 63
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.26 E-value=5.4e-06 Score=69.94 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHH-cC--CC----HHHHHHHHHHhCCCCCCCccHHHHHHHHHHhH
Q psy7068 279 ASKLKYTQLFNTTDRT--RSGFLSGPQARNIMVA-TG--LS----QGILAQIWNLADMDSDGQLSCDEFVLAMHLCD 346 (487)
Q Consensus 279 eEk~k~~qiF~~lD~D--~dG~Is~eELk~~L~~-sG--L~----e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~ 346 (487)
+-+..+-.+|..++.+ .+|+|+.+||+.+|.. .+ ++ ++++..||+.+|.|++|.|+|+||+..|..+.
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4466788999999976 4799999999999974 33 44 88999999999999999999999999886443
No 64
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.20 E-value=5.6e-06 Score=61.06 Aligned_cols=57 Identities=26% Similarity=0.441 Sum_probs=50.0
Q ss_pred HHHhhh-cCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q psy7068 397 ETHFQA-MKPVNGIVTGDQVKGFLMQSG--LPVATLGQIWSLADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 397 ~~iF~~-dkD~DG~IS~eELr~vL~~~G--L~eeeL~~I~~l~D~D~DGkIS~dEFv~aM 453 (487)
..+|.. +.|++|.|+.+|++.++...+ .+.+++..+|+.+|.+++|.|+++||+.++
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 456665 589999999999999999875 678889999999999999999999998765
No 65
>KOG0034|consensus
Probab=98.19 E-value=1.5e-05 Score=76.71 Aligned_cols=102 Identities=12% Similarity=0.154 Sum_probs=78.2
Q ss_pred HHHHHHhCCCCCCc-ccHHHHHHHHHHcC---CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCC
Q psy7068 285 TQLFNTTDRTRSGF-LSGPQARNIMVATG---LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPI 360 (487)
Q Consensus 285 ~qiF~~lD~D~dG~-Is~eELk~~L~~sG---L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~ 360 (487)
.++|+.+|.+++|. |+.+++..+|...- ..++-++-.|+++|.|++|.|+++|+..++...-...
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~----------- 137 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGEN----------- 137 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccC-----------
Confidence 67899999999999 99999999987763 3345677899999999999999999999886443210
Q ss_pred CCCChhhhhhccchhhhhhcccCCCCccchhHHH-HHHHHhhh-cCCCCCcccHHHHHHHHHhC
Q psy7068 361 DMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERT-RFETHFQA-MKPVNGIVTGDQVKGFLMQS 422 (487)
Q Consensus 361 ~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~-~~~~iF~~-dkD~DG~IS~eELr~vL~~~ 422 (487)
|-++.+.+. ..+.+|.. |.|+||+|+.+|+.+++.+.
T Consensus 138 -------------------------~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 138 -------------------------DDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred -------------------------CcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 111233443 34466765 69999999999999998854
No 66
>KOG0038|consensus
Probab=98.18 E-value=9.5e-06 Score=75.20 Aligned_cols=94 Identities=21% Similarity=0.310 Sum_probs=71.4
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHH
Q psy7068 319 AQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFET 398 (487)
Q Consensus 319 ~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~ 398 (487)
++|...+..|++|.|+|++|+.++..... +. ..+.+..|
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE-~A--------------------------------------PrdlK~~Y-- 112 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSE-MA--------------------------------------PRDLKAKY-- 112 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHh-hC--------------------------------------hHHhhhhh--
Confidence 46777888999999999999987754331 00 01122233
Q ss_pred Hhhh-cCCCCCcccHHHHHHHHHhC---CCCHHHH----HHHHHHhcCCCCCceeHHHHHHHH
Q psy7068 399 HFQA-MKPVNGIVTGDQVKGFLMQS---GLPVATL----GQIWSLADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 399 iF~~-dkD~DG~IS~eELr~vL~~~---GL~eeeL----~~I~~l~D~D~DGkIS~dEFv~aM 453 (487)
.|+. |-|+|++|...+|...+..+ +|+++|+ ++++..+|.|+||+|++.||-.++
T Consensus 113 AFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 113 AFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred eeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 5665 47999999999999988754 5888875 567889999999999999998765
No 67
>KOG0041|consensus
Probab=98.18 E-value=4.2e-06 Score=80.97 Aligned_cols=68 Identities=24% Similarity=0.384 Sum_probs=59.7
Q ss_pred chhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCCCCHHHH--HHHHHHhcCCCCCceeHHHHHHHHHHH
Q psy7068 389 SRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSGLPVATL--GQIWSLADTDQDGKMNINEFVIACKLI 456 (487)
Q Consensus 389 s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~GL~eeeL--~~I~~l~D~D~DGkIS~dEFv~aM~LV 456 (487)
+..+...+..+|+. |.|.||||+..||+.+|.++|.++..+ +.|++.+|.|.||+|+|-||+.+.+..
T Consensus 94 srkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 94 SRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 45567788899987 599999999999999999999998774 889999999999999999998766543
No 68
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.17 E-value=5.7e-06 Score=73.84 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=52.6
Q ss_pred hhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q psy7068 390 RHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 390 ~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM 453 (487)
+..+..+.-+|.. |+|+||+|+.+||..++ .+..+..+..+|+.+|.|+||.||++||..++
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3455666667876 59999999999999887 45567778999999999999999999999887
No 69
>KOG4251|consensus
Probab=98.17 E-value=6.6e-06 Score=81.75 Aligned_cols=158 Identities=21% Similarity=0.296 Sum_probs=100.0
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHc-CCCH---------------HHHHHHHHHhCCCCCCCccH---------HHHHH
Q psy7068 286 QLFNTTDRTRSGFLSGPQARNIMVAT-GLSQ---------------GILAQIWNLADMDSDGQLSC---------DEFVL 340 (487)
Q Consensus 286 qiF~~lD~D~dG~Is~eELk~~L~~s-GL~e---------------~eL~~Iw~l~D~D~DG~Ldf---------eEFl~ 340 (487)
-.|+..|+|+||.|+.+|++.-|.++ |.++ ++-.+.+..-+++.+++++. +||..
T Consensus 144 thFraVDpdgDGhvsWdEykvkFlaskghsekevadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEfls 223 (362)
T KOG4251|consen 144 THFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLS 223 (362)
T ss_pred hheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHH
Confidence 35888999999999999998887776 2221 23345666677777787777 99998
Q ss_pred HHHHhHhh---------------hCCCCCC---C--CCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHh
Q psy7068 341 AMHLCDLA---------------KGGEKIP---V--PLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHF 400 (487)
Q Consensus 341 aM~Lv~~a---------------~~g~~lP---~--~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF 400 (487)
++|.-+.+ +++.+.. . .||+..|... ....-++.|+ .+.+..|+++.
T Consensus 224 FLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenq-----------qgqdiddnwv--kdRkkEFeElI 290 (362)
T KOG4251|consen 224 FLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQ-----------QGQDIDDNWV--KDRKKEFEELI 290 (362)
T ss_pred HcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhh-----------hccchHHHHH--HHHHHHHHHHh
Confidence 87644332 2222110 0 1111111100 0000012242 11222333333
Q ss_pred hhcCCCCCcccHHHHHHHHHhC--CCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHH
Q psy7068 401 QAMKPVNGIVTGDQVKGFLMQS--GLPVATLGQIWSLADTDQDGKMNINEFVIACKLISN 458 (487)
Q Consensus 401 ~~dkD~DG~IS~eELr~vL~~~--GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~ 458 (487)
|.|.||.++.+||..++.-. .+.-.++..|+.+.|.|+|.+++.+|.+..-+++.+
T Consensus 291 --DsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r~~~~~r 348 (362)
T KOG4251|consen 291 --DSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLERDWLLAR 348 (362)
T ss_pred --hcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHHHhhhcc
Confidence 57999999999999997633 366788999999999999999999998876665543
No 70
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.09 E-value=1.5e-05 Score=67.17 Aligned_cols=62 Identities=18% Similarity=0.313 Sum_probs=51.0
Q ss_pred HHHHHhhhc--C-CCCCcccHHHHHHHHH-hCC--CC----HHHHHHHHHHhcCCCCCceeHHHHHHHHHHH
Q psy7068 395 RFETHFQAM--K-PVNGIVTGDQVKGFLM-QSG--LP----VATLGQIWSLADTDQDGKMNINEFVIACKLI 456 (487)
Q Consensus 395 ~~~~iF~~d--k-D~DG~IS~eELr~vL~-~~G--L~----eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV 456 (487)
.+..+|..+ + +.+|+|+.+||+.+|. ..| ++ +++++.||+.+|.|+||.|+|+||+.+|.-+
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 455677764 3 3689999999999997 333 44 8999999999999999999999999888644
No 71
>KOG0036|consensus
Probab=98.06 E-value=2.9e-05 Score=81.83 Aligned_cols=124 Identities=17% Similarity=0.243 Sum_probs=95.5
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCC
Q psy7068 282 LKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPID 361 (487)
Q Consensus 282 ~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~ 361 (487)
+....+|..+|.|.||.++.+||+..+... +.++.++|...|.++||.|+.+|.-..+..... +
T Consensus 51 ~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~---E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi-----~-------- 114 (463)
T KOG0036|consen 51 EAAKMLFSAMDANRDGRVDYSEFKRYLDNK---ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGI-----Q-------- 114 (463)
T ss_pred HHHHHHHHhcccCcCCcccHHHHHHHHHHh---HHHHHHHHhhhccccCCccCHHHHHHHHHHhCC-----c--------
Confidence 355789999999999999999999999876 667889999999999999999998776643321 1
Q ss_pred CCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCCCCHHHHHHH---HHH--
Q psy7068 362 MIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSGLPVATLGQI---WSL-- 435 (487)
Q Consensus 362 LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~GL~eeeL~~I---~~l-- 435 (487)
++ .++..++|.. |+|+++.|+.+|+++++.-. +++.+..| |+.
T Consensus 115 --------------------------l~---de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~--p~s~i~di~~~W~h~~ 163 (463)
T KOG0036|consen 115 --------------------------LS---DEKAAKFFEHMDKDGKATIDLEEWRDHLLLY--PESDLEDIYDFWRHVL 163 (463)
T ss_pred --------------------------cC---HHHHHHHHHHhccCCCeeeccHHHHhhhhcC--ChhHHHHHHHhhhhhe
Confidence 12 2334456765 68999999999999998853 35556665 443
Q ss_pred -hcCCCCCceeHHHHHHHH
Q psy7068 436 -ADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 436 -~D~D~DGkIS~dEFv~aM 453 (487)
+|.+.|..|. |+|....
T Consensus 164 ~idigE~~~iP-dg~s~~e 181 (463)
T KOG0036|consen 164 LIDIGEDAVLP-DGDSKLE 181 (463)
T ss_pred EEEccccccCC-cchHHHH
Confidence 6788888888 7776544
No 72
>KOG0040|consensus
Probab=98.01 E-value=6.2e-05 Score=88.44 Aligned_cols=136 Identities=18% Similarity=0.283 Sum_probs=102.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCC---------CHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q psy7068 274 WAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGL---------SQGILAQIWNLADMDSDGQLSCDEFVLAMHL 344 (487)
Q Consensus 274 w~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL---------~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~L 344 (487)
-.+++++..+|..+|+.||++.+|.++..+|+.+|+..|+ ++.++++|+.++|.+.+|.|+..||+.+|-.
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 3699999999999999999999999999999999999873 3458999999999999999999999998832
Q ss_pred hHhhhCCCCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhhcCCCCCcccHHHHHHHHHhCCC
Q psy7068 345 CDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGL 424 (487)
Q Consensus 345 v~~a~~g~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~~~GL 424 (487)
.. -+. +.+ -..++..|+....+.-||+..++..- +
T Consensus 2325 ~E----TeN---------------------------------I~s---~~eIE~AfraL~a~~~yvtke~~~~~-----l 2359 (2399)
T KOG0040|consen 2325 KE----TEN---------------------------------ILS---SEEIEDAFRALDAGKPYVTKEELYQN-----L 2359 (2399)
T ss_pred cc----ccc---------------------------------ccc---hHHHHHHHHHhhcCCccccHHHHHhc-----C
Confidence 11 011 111 12677788876348889999998644 4
Q ss_pred CHHHH----HHHHHHhcCC----CCCceeHHHHHHHHH
Q psy7068 425 PVATL----GQIWSLADTD----QDGKMNINEFVIACK 454 (487)
Q Consensus 425 ~eeeL----~~I~~l~D~D----~DGkIS~dEFv~aM~ 454 (487)
+.++. .+|-..+|.. --+.|.|.+|+..++
T Consensus 2360 treqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2360 TREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSLF 2397 (2399)
T ss_pred CHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHHh
Confidence 44444 3444455553 224699999988764
No 73
>KOG2643|consensus
Probab=97.92 E-value=2.6e-05 Score=82.63 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=49.3
Q ss_pred hCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHh
Q psy7068 291 TDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDL 347 (487)
Q Consensus 291 lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~ 347 (487)
+|-+.+|.|+..|..-++.-+..++...+--|+++|.|+||.|+.+||...+.++..
T Consensus 208 ~~lg~~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~s 264 (489)
T KOG2643|consen 208 YKLGESGLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRS 264 (489)
T ss_pred EEcCCCCeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHh
Confidence 456779999999988888777788888888899999999999999999998877654
No 74
>KOG0377|consensus
Probab=97.89 E-value=2.4e-05 Score=82.99 Aligned_cols=67 Identities=24% Similarity=0.343 Sum_probs=59.5
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHc------CCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhh
Q psy7068 282 LKYTQLFNTTDRTRSGFLSGPQARNIMVAT------GLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLA 348 (487)
Q Consensus 282 ~k~~qiF~~lD~D~dG~Is~eELk~~L~~s------GL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a 348 (487)
..+.-+|+.+|.|++|.|+.+||+...+-+ .++++++.++-+.+|.|+||.||++||+.|++++.+.
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~ 619 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRR 619 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcch
Confidence 446789999999999999999999877654 2688999999999999999999999999999998863
No 75
>PF14658 EF-hand_9: EF-hand domain
Probab=97.84 E-value=4.5e-05 Score=61.86 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=53.9
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHcCC---CHHHHHHHHHHhCCCCC-CCccHHHHHHHHHH
Q psy7068 286 QLFNTTDRTRSGFLSGPQARNIMVATGL---SQGILAQIWNLADMDSD-GQLSCDEFVLAMHL 344 (487)
Q Consensus 286 qiF~~lD~D~dG~Is~eELk~~L~~sGL---~e~eL~~Iw~l~D~D~D-G~LdfeEFl~aM~L 344 (487)
..|+.+|.++.|.|...+++.+|+..+. .+.+|+.+.+++|.++. |.|+|+.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3699999999999999999999999854 67899999999999987 99999999999963
No 76
>KOG2562|consensus
Probab=97.76 E-value=0.00018 Score=76.87 Aligned_cols=124 Identities=18% Similarity=0.276 Sum_probs=89.3
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHH----HhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCC
Q psy7068 285 TQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWN----LADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPI 360 (487)
Q Consensus 285 ~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~----l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~ 360 (487)
...|-.+|+|+||.|+.++|+..-.. -++...+++||. ..-.-.+|+++|++|+-.+-.... +.
T Consensus 281 y~kFweLD~Dhd~lidk~~L~ry~d~-tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~---k~-------- 348 (493)
T KOG2562|consen 281 YCKFWELDTDHDGLIDKEDLKRYGDH-TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED---KD-------- 348 (493)
T ss_pred HHHHhhhccccccccCHHHHHHHhcc-chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc---CC--------
Confidence 33488899999999999998876322 256778999999 344557899999999876521110 00
Q ss_pred CCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHH-------hCC---CC-HHH
Q psy7068 361 DMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLM-------QSG---LP-VAT 428 (487)
Q Consensus 361 ~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~-------~~G---L~-eee 428 (487)
.-..++-.|+. |-|++|+|+..||+-++. ..| ++ ++.
T Consensus 349 -------------------------------t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~ 397 (493)
T KOG2562|consen 349 -------------------------------TPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDA 397 (493)
T ss_pred -------------------------------CccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHH
Confidence 01112336775 589999999999998886 223 44 455
Q ss_pred HHHHHHHhcCCCCCceeHHHHHH
Q psy7068 429 LGQIWSLADTDQDGKMNINEFVI 451 (487)
Q Consensus 429 L~~I~~l~D~D~DGkIS~dEFv~ 451 (487)
+.+||+++-....++|++.+|..
T Consensus 398 l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 398 LCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred HHHHHHHhCccCCCceeHHHHhh
Confidence 78899999888899999999764
No 77
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.74 E-value=0.00015 Score=62.40 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=52.2
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHhC-------CCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHHh
Q psy7068 395 RFETHFQAMKPVNGIVTGDQVKGFLMQS-------GLPVATLGQIWSLADTDQDGKMNINEFVIACKLISNK 459 (487)
Q Consensus 395 ~~~~iF~~dkD~DG~IS~eELr~vL~~~-------GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~k 459 (487)
.+-.+|..+.-+++.|+..||++++.+. ....+.+++|++..|.|+||.|+|.||+.++.-|-.+
T Consensus 9 ~lI~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~a 80 (91)
T cd05024 9 KMMLTFHKFAGEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIA 80 (91)
T ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 3456788775556799999999999722 2457889999999999999999999999888655443
No 78
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.71 E-value=4.5e-05 Score=52.05 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHH
Q psy7068 428 TLGQIWSLADTDQDGKMNINEFVIACK 454 (487)
Q Consensus 428 eL~~I~~l~D~D~DGkIS~dEFv~aM~ 454 (487)
|++++|+.+|.|+||+|+++||..+|.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 578999999999999999999999885
No 79
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.67 E-value=0.00034 Score=60.15 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc-------CCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhH
Q psy7068 280 SKLKYTQLFNTTDRTRSGFLSGPQARNIMVAT-------GLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCD 346 (487)
Q Consensus 280 Ek~k~~qiF~~lD~D~dG~Is~eELk~~L~~s-------GL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~ 346 (487)
.+..+-.+|.++-. .++.|+..||+.+|.+- .-....+++|++..|.|+||.|+|.||+..+..+.
T Consensus 6 ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 6 SMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 34567789999985 56799999999998653 23578899999999999999999999998775443
No 80
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.61 E-value=6.7e-05 Score=51.20 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHH
Q psy7068 317 ILAQIWNLADMDSDGQLSCDEFVLAMH 343 (487)
Q Consensus 317 eL~~Iw~l~D~D~DG~LdfeEFl~aM~ 343 (487)
+++++|+.+|.|+||.|+++||..+|.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 356666667777777777777666654
No 81
>KOG0046|consensus
Probab=97.55 E-value=0.00023 Score=77.05 Aligned_cols=69 Identities=17% Similarity=0.291 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCC-----CHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q psy7068 275 AVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGL-----SQGILAQIWNLADMDSDGQLSCDEFVLAMHL 344 (487)
Q Consensus 275 ~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL-----~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~L 344 (487)
.++++|...++..|.++| |++|+|+..|+..+|.+.++ .+++++++....+.|.+|+|+|+||+.++.-
T Consensus 12 ~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred cccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 589999999999999999 99999999999999999874 3789999999999999999999999987643
No 82
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.42 E-value=0.00033 Score=74.43 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHh
Q psy7068 280 SKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDL 347 (487)
Q Consensus 280 Ek~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~ 347 (487)
-+..++.+|+.+|.|+||+|+.+|+.. ++.+|..+|.|+||.|+++||..++....+
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 345778999999999999999999842 578999999999999999999999865543
No 83
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.42 E-value=0.00019 Score=48.98 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHH-HcC
Q psy7068 283 KYTQLFNTTDRTRSGFLSGPQARNIMV-ATG 312 (487)
Q Consensus 283 k~~qiF~~lD~D~dG~Is~eELk~~L~-~sG 312 (487)
+|+.+|+.+|.|++|+|+.+|++.+|+ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478889999999999999999999888 444
No 84
>KOG0031|consensus
Probab=97.41 E-value=0.00052 Score=64.29 Aligned_cols=62 Identities=18% Similarity=0.337 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcC--CCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q psy7068 282 LKYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343 (487)
Q Consensus 282 ~k~~qiF~~lD~D~dG~Is~eELk~~L~~sG--L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~ 343 (487)
+.+...|..||.+++|+|..+.++++|...| +++++++++|..+-.|..|.|+|.+|+.++.
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 4578899999999999999999999999986 7999999999999999999999999998874
No 85
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.31 E-value=7.8e-05 Score=66.12 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHH
Q psy7068 278 HASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLA 341 (487)
Q Consensus 278 ~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~a 341 (487)
......+.-.|..+|.|+||+|+..|++.+...+...+.=+..+++.+|.|+||.|++.||..+
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 3456677888999999999999999999987766556666788999999999999999999753
No 86
>KOG0169|consensus
Probab=97.30 E-value=0.0019 Score=72.67 Aligned_cols=133 Identities=16% Similarity=0.226 Sum_probs=103.8
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC--CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCC
Q psy7068 277 PHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKI 354 (487)
Q Consensus 277 t~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sG--L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~l 354 (487)
.......+..+|+..|++.+|.++..+..++++.++ +....+..+|+..|...++++.++||.........
T Consensus 131 ~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~------- 203 (746)
T KOG0169|consen 131 RSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK------- 203 (746)
T ss_pred cchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc-------
Confidence 344556788899999999999999999999998875 57777888999998889999999999876542221
Q ss_pred CCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhhcCCCCCcccHHHHHHHHHhC----CCCHHHHH
Q psy7068 355 PVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQS----GLPVATLG 430 (487)
Q Consensus 355 P~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~~~----GL~eeeL~ 430 (487)
+-....+|..+.++.++++.++|.++|... +...+..+
T Consensus 204 --------------------------------------rpev~~~f~~~s~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae 245 (746)
T KOG0169|consen 204 --------------------------------------RPEVYFLFVQYSHGKEYLSTDDLLRFLEEEQGEDGATLDEAE 245 (746)
T ss_pred --------------------------------------CchHHHHHHHHhCCCCccCHHHHHHHHHHhcccccccHHHHH
Confidence 113445666665669999999999999854 36677778
Q ss_pred HHHHHhcC----CCCCceeHHHHHHHHH
Q psy7068 431 QIWSLADT----DQDGKMNINEFVIACK 454 (487)
Q Consensus 431 ~I~~l~D~----D~DGkIS~dEFv~aM~ 454 (487)
+|++.+.. ...+.+++|.|..+|.
T Consensus 246 ~ii~~~e~~k~~~~~~~l~ldgF~~yL~ 273 (746)
T KOG0169|consen 246 EIIERYEPSKEFRRHGLLSLDGFTRYLF 273 (746)
T ss_pred HHHHHhhhhhhccccceecHHHHHHHhc
Confidence 88776643 3556799999998884
No 87
>KOG2562|consensus
Probab=97.22 E-value=0.0024 Score=68.58 Aligned_cols=61 Identities=15% Similarity=0.286 Sum_probs=43.7
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHHh----cCCCCCceeHHHHHHHHH
Q psy7068 393 RTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLA----DTDQDGKMNINEFVIACK 454 (487)
Q Consensus 393 k~~~~~iF~~dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~----D~D~DGkIS~dEFv~aM~ 454 (487)
...|-++...|+|+||.|+.++|...-... +..--+++||..+ -...+|+++|++|+.++.
T Consensus 278 ~viy~kFweLD~Dhd~lidk~~L~ry~d~t-lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~Fil 342 (493)
T KOG2562|consen 278 YVIYCKFWELDTDHDGLIDKEDLKRYGDHT-LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFIL 342 (493)
T ss_pred HHHHHHHhhhccccccccCHHHHHHHhccc-hhhHHHHHHHhhccccceeeecCcccHHHHHHHHH
Confidence 334444444579999999999999875533 4466688999833 345789999999988773
No 88
>KOG4666|consensus
Probab=97.15 E-value=0.00059 Score=70.42 Aligned_cols=116 Identities=15% Similarity=0.060 Sum_probs=85.5
Q ss_pred CCCcccHHHHHHHHHHcCCCH-HHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCCCCChhhhhhccc
Q psy7068 295 RSGFLSGPQARNIMVATGLSQ-GILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQN 373 (487)
Q Consensus 295 ~dG~Is~eELk~~L~~sGL~e-~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~LvPps~r~~~~s 373 (487)
+.+.|.+.|+..-+ .++. +.++.+|.++|.+++|.+||.|.+..+..+..
T Consensus 240 kg~~igi~efa~~l---~vpvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~-------------------------- 290 (412)
T KOG4666|consen 240 KGPDIGIVEFAVNL---RVPVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCG-------------------------- 290 (412)
T ss_pred cCCCcceeEeeeee---ecchhhhhhhhhheecCCCCCcccHHHHhhhheeeeC--------------------------
Confidence 45555555543322 2322 56788999999999999999999988764442
Q ss_pred hhhhhhcccCCCCccchhHHHHHHHHhhhcCCCCCcccHHHHHHHHH-hCCCCHHHHHHHHHHhcCCCCCceeHHHHHHH
Q psy7068 374 SVTLAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLM-QSGLPVATLGQIWSLADTDQDGKMNINEFVIA 452 (487)
Q Consensus 374 s~~s~~s~~~d~W~~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~-~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~a 452 (487)
-..+++..+...++| +.+.||++...+|.-+++ ..|+.+-.+-.+|...+...||+|+|.+|-.+
T Consensus 291 ------------p~~t~~iiq~afk~f--~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~f 356 (412)
T KOG4666|consen 291 ------------PPVTPVIIQYAFKRF--SVAEDGISGEHILSLILQVVLGVEVLRVPVLFPSIEQKDDPKIYASNFRKF 356 (412)
T ss_pred ------------CCCcHHHHHHHHHhc--ccccccccchHHHHHHHHHhcCcceeeccccchhhhcccCcceeHHHHHHH
Confidence 112233333334444 368999999999999998 45888888889999999999999999999987
Q ss_pred H
Q psy7068 453 C 453 (487)
Q Consensus 453 M 453 (487)
|
T Consensus 357 a 357 (412)
T KOG4666|consen 357 A 357 (412)
T ss_pred H
Confidence 7
No 89
>KOG0046|consensus
Probab=97.11 E-value=0.0012 Score=71.71 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=63.2
Q ss_pred cchhHHHHHHHHhhhcCCCCCcccHHHHHHHHHhCC-----CCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHHh
Q psy7068 388 VSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSG-----LPVATLGQIWSLADTDQDGKMNINEFVIACKLISNK 459 (487)
Q Consensus 388 ~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~~~G-----L~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~k 459 (487)
+++++...+.+-|.+.+|++|+|+..|+..+|.+.+ ...++++.++...+.|.+|+|+|+||+.+++-++.+
T Consensus 13 ~tq~El~~l~~kF~~~d~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~ 89 (627)
T KOG0046|consen 13 LTQEELRELKEKFNKLDDQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSK 89 (627)
T ss_pred ccHHHHHHHHHHHHhhcCCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhh
Confidence 677888888899988679999999999999999876 347889999999999999999999999988666554
No 90
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.10 E-value=0.0035 Score=66.78 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=45.7
Q ss_pred HHHHHHHhhh-cCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHH
Q psy7068 393 RTRFETHFQA-MKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISN 458 (487)
Q Consensus 393 k~~~~~iF~~-dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~ 458 (487)
+..+..+|+. |.|+||+|+.+||.. ++.+|+.+|.|+||.|+++||..+|....+
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 4455667776 589999999999942 578999999999999999999998876554
No 91
>PF14658 EF-hand_9: EF-hand domain
Probab=97.03 E-value=0.002 Score=52.35 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=49.0
Q ss_pred Hhhh-cCCCCCcccHHHHHHHHHhCC---CCHHHHHHHHHHhcCCCC-CceeHHHHHHHHH
Q psy7068 399 HFQA-MKPVNGIVTGDQVKGFLMQSG---LPVATLGQIWSLADTDQD-GKMNINEFVIACK 454 (487)
Q Consensus 399 iF~~-dkD~DG~IS~eELr~vL~~~G---L~eeeL~~I~~l~D~D~D-GkIS~dEFv~aM~ 454 (487)
+|+. |.++.|.|...+|..+|+..+ ..+++++.+.+++|.++. |.|+++.|..+|.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 3444 479999999999999999765 468899999999999887 9999999999995
No 92
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.93 E-value=0.0031 Score=48.79 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=39.6
Q ss_pred cccHHHHHHHHHhCC--CCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHH
Q psy7068 409 IVTGDQVKGFLMQSG--LPVATLGQIWSLADTDQDGKMNINEFVIACKLI 456 (487)
Q Consensus 409 ~IS~eELr~vL~~~G--L~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV 456 (487)
+++..|++++|+..+ +++.-+..+|+.+|.+++|.|..+||..+...+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 478999999999777 566668999999999999999999999987643
No 93
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.86 E-value=0.0031 Score=48.79 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=39.6
Q ss_pred cccHHHHHHHHHHcCC--CHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q psy7068 298 FLSGPQARNIMVATGL--SQGILAQIWNLADMDSDGQLSCDEFVLAMHL 344 (487)
Q Consensus 298 ~Is~eELk~~L~~sGL--~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~L 344 (487)
+++..|++.+|+.+++ ++.....+|+.+|.+++|.|+.+||...++.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 4688999999999975 7788999999999999999999999987753
No 94
>KOG0751|consensus
Probab=96.86 E-value=0.0072 Score=65.49 Aligned_cols=131 Identities=16% Similarity=0.211 Sum_probs=80.4
Q ss_pred HHHHHHHH---HHHhCCCCCCcccHHHHHHHHHHc----CCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCC
Q psy7068 280 SKLKYTQL---FNTTDRTRSGFLSGPQARNIMVAT----GLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGE 352 (487)
Q Consensus 280 Ek~k~~qi---F~~lD~D~dG~Is~eELk~~L~~s----GL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~ 352 (487)
+.++++.+ |...|.++.-+++.+++......+ +.+++.++-+-...|..+||-|+|+||+..-.+...
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~----- 105 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCA----- 105 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccC-----
Confidence 33445554 455678888899999887654333 345555555556789999999999999865432221
Q ss_pred CCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCCCC------
Q psy7068 353 KIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSGLP------ 425 (487)
Q Consensus 353 ~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~GL~------ 425 (487)
....++.+|+. |+.++|.+|.+++.+++.+..+.
T Consensus 106 ---------------------------------------pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~ 146 (694)
T KOG0751|consen 106 ---------------------------------------PDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFN 146 (694)
T ss_pred ---------------------------------------chHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCcc
Confidence 12234555554 47888999999999999865432
Q ss_pred --HHHHHHHHHHhcCCCCCceeHHHHHHHHHHHH
Q psy7068 426 --VATLGQIWSLADTDQDGKMNINEFVIACKLIS 457 (487)
Q Consensus 426 --eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~ 457 (487)
.+-|...|. .+..-.++|+||..++|-++
T Consensus 147 ~d~efI~~~Fg---~~~~r~~ny~~f~Q~lh~~~ 177 (694)
T KOG0751|consen 147 WDSEFIKLHFG---DIRKRHLNYAEFTQFLHEFQ 177 (694)
T ss_pred CCcchHHHHhh---hHHHHhccHHHHHHHHHHHH
Confidence 222222221 12233466666666665443
No 95
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.84 E-value=0.0016 Score=42.93 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHH
Q psy7068 429 LGQIWSLADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 429 L~~I~~l~D~D~DGkIS~dEFv~aM 453 (487)
|+++|+.+|.|+||.|+++||..+|
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4668889999999999999988753
No 96
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.67 E-value=0.0021 Score=42.34 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=11.1
Q ss_pred HHHHHHhCCCCCCcccHHHHHH
Q psy7068 285 TQLFNTTDRTRSGFLSGPQARN 306 (487)
Q Consensus 285 ~qiF~~lD~D~dG~Is~eELk~ 306 (487)
+..|+.+|.|+||.|+.+|+..
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHH
Confidence 3445555555555555555544
No 97
>KOG0038|consensus
Probab=96.54 E-value=0.004 Score=58.11 Aligned_cols=60 Identities=25% Similarity=0.349 Sum_probs=50.3
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHc---CCCHHHH----HHHHHHhCCCCCCCccHHHHHHHH
Q psy7068 283 KYTQLFNTTDRTRSGFLSGPQARNIMVAT---GLSQGIL----AQIWNLADMDSDGQLSCDEFVLAM 342 (487)
Q Consensus 283 k~~qiF~~lD~D~dG~Is~eELk~~L~~s---GL~e~eL----~~Iw~l~D~D~DG~LdfeEFl~aM 342 (487)
|..=.|+.+|-|+|++|..++|...+..+ +|+.+++ +++++.+|.|+||+|+|.||...+
T Consensus 109 K~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 109 KAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred hhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 44557999999999999999999988776 6877654 567788999999999999998654
No 98
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.41 E-value=0.0048 Score=42.00 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHH
Q psy7068 428 TLGQIWSLADTDQDGKMNINEFVIACK 454 (487)
Q Consensus 428 eL~~I~~l~D~D~DGkIS~dEFv~aM~ 454 (487)
++..+|+.+|.|+||.|+++||..+|.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467888999999999999999988774
No 99
>KOG0751|consensus
Probab=96.39 E-value=0.024 Score=61.66 Aligned_cols=91 Identities=20% Similarity=0.241 Sum_probs=59.5
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHcCCC--------HHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCC
Q psy7068 283 KYTQLFNTTDRTRSGFLSGPQARNIMVATGLS--------QGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKI 354 (487)
Q Consensus 283 k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~--------e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~l 354 (487)
.|..+|+.||+.++|.++.+++++++.+..+. .+-+...| ..+..-.++|.||...+|..+.
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~F---g~~~~r~~ny~~f~Q~lh~~~~------- 178 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHF---GDIRKRHLNYAEFTQFLHEFQL------- 178 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHh---hhHHHHhccHHHHHHHHHHHHH-------
Confidence 46667777788788888888777777776431 22333322 2233456777777777764442
Q ss_pred CCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhC
Q psy7068 355 PVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQS 422 (487)
Q Consensus 355 P~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~ 422 (487)
+..++.|+. |+.++|+||.-+++.++...
T Consensus 179 ---------------------------------------E~~~qafr~~d~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 179 ---------------------------------------EHAEQAFREKDKAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred ---------------------------------------HHHHHHHHHhcccCCCeeeeechHhhhhhh
Confidence 124455654 78999999999999988744
No 100
>KOG4065|consensus
Probab=96.37 E-value=0.0099 Score=53.53 Aligned_cols=65 Identities=23% Similarity=0.387 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc------C-----C-CHHHHHHHHH----HhCCCCCCCccHHHH
Q psy7068 275 AVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVAT------G-----L-SQGILAQIWN----LADMDSDGQLSCDEF 338 (487)
Q Consensus 275 ~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~s------G-----L-~e~eL~~Iw~----l~D~D~DG~LdfeEF 338 (487)
.+++++.+ -..|+.+|-|+||+|++-|+..++.-. | + ++.++++|++ .-|.|+||.|+|-||
T Consensus 62 ~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEf 139 (144)
T KOG4065|consen 62 KMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEF 139 (144)
T ss_pred hCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHH
Confidence 46776653 347999999999999999988877532 3 2 5667776665 457889999999999
Q ss_pred HHH
Q psy7068 339 VLA 341 (487)
Q Consensus 339 l~a 341 (487)
+..
T Consensus 140 lK~ 142 (144)
T KOG4065|consen 140 LKR 142 (144)
T ss_pred Hhh
Confidence 864
No 101
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.30 E-value=0.0024 Score=56.70 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=42.7
Q ss_pred HHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHH
Q psy7068 392 ERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIA 452 (487)
Q Consensus 392 dk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~a 452 (487)
.+..+.=.|.. |.|+||+|+..||+.+...+.-.+.-+...++.+|.|+||.||+.|+..+
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 34444446765 69999999999999887655444555888999999999999999999753
No 102
>KOG0030|consensus
Probab=96.19 E-value=0.05 Score=50.48 Aligned_cols=103 Identities=10% Similarity=0.009 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHH
Q psy7068 315 QGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERT 394 (487)
Q Consensus 315 e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~ 394 (487)
..+++++|.++|..+||+|++..--.+|+.... .+ +.++..
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~----nP-----------------------------------T~aeV~ 50 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQ----NP-----------------------------------TNAEVL 50 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcC----CC-----------------------------------cHHHHH
Confidence 368899999999999999999998877764432 11 111221
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHhC-----CCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHH
Q psy7068 395 RFETHFQAMKPVNGIVTGDQVKGFLMQS-----GLPVATLGQIWSLADTDQDGKMNINEFVIACKLI 456 (487)
Q Consensus 395 ~~~~iF~~dkD~DG~IS~eELr~vL~~~-----GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV 456 (487)
+...-|...+-+--+|++++|.-++... +..-++.-+-++.+|++++|.|...|+-..+.-+
T Consensus 51 k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttl 117 (152)
T KOG0030|consen 51 KVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTL 117 (152)
T ss_pred HHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHH
Confidence 2111121112234678888888777633 3455667777899999999999999988776443
No 103
>KOG4065|consensus
Probab=95.74 E-value=0.034 Score=50.16 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=40.8
Q ss_pred Hhhh-cCCCCCcccHHHHHHHHH------hCC------CCHHHHHHHHH----HhcCCCCCceeHHHHHHH
Q psy7068 399 HFQA-MKPVNGIVTGDQVKGFLM------QSG------LPVATLGQIWS----LADTDQDGKMNINEFVIA 452 (487)
Q Consensus 399 iF~~-dkD~DG~IS~eELr~vL~------~~G------L~eeeL~~I~~----l~D~D~DGkIS~dEFv~a 452 (487)
.|.. |-|++|+|++-||.+.+. +.| .++.|+..|++ .-|.|+||.|+|-||+..
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3443 579999999999999887 233 34666666554 457899999999999864
No 104
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.32 E-value=0.037 Score=45.59 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=48.4
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHhC----CCCHHHHHHHHHHhcCC----CCCceeHHHHHHHH
Q psy7068 396 FETHFQAMKPVNGIVTGDQVKGFLMQS----GLPVATLGQIWSLADTD----QDGKMNINEFVIAC 453 (487)
Q Consensus 396 ~~~iF~~dkD~DG~IS~eELr~vL~~~----GL~eeeL~~I~~l~D~D----~DGkIS~dEFv~aM 453 (487)
+..+|..+.++.+.|+.++|+++|.+. .++.+++.+|+..+..+ ..+.|++++|..+|
T Consensus 2 i~~if~~ys~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 2 IEEIFRKYSSDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHCTTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 457888876689999999999999844 36789999999887654 47999999999988
No 105
>KOG0040|consensus
Probab=95.16 E-value=0.038 Score=66.28 Aligned_cols=67 Identities=22% Similarity=0.410 Sum_probs=59.5
Q ss_pred ccchhHHHHHHHHhhhc-CCCCCcccHHHHHHHHHhCC--C--CHH-----HHHHHHHHhcCCCCCceeHHHHHHHH
Q psy7068 387 NVSRHERTRFETHFQAM-KPVNGIVTGDQVKGFLMQSG--L--PVA-----TLGQIWSLADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 387 ~~s~edk~~~~~iF~~d-kD~DG~IS~eELr~vL~~~G--L--~ee-----eL~~I~~l~D~D~DGkIS~dEFv~aM 453 (487)
.++.+....|..+|+.+ ++.+|.++.++|+..|+..| + .++ +++.++.++|.+.+|.|++.+|+.+|
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 46778888999999875 99999999999999999877 3 234 79999999999999999999999998
No 106
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.06 E-value=0.028 Score=34.85 Aligned_cols=27 Identities=37% Similarity=0.544 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHH
Q psy7068 428 TLGQIWSLADTDQDGKMNINEFVIACK 454 (487)
Q Consensus 428 eL~~I~~l~D~D~DGkIS~dEFv~aM~ 454 (487)
++..+|+.+|.+++|.|+++||..++.
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 367889999999999999999998774
No 107
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.65 E-value=0.042 Score=34.04 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=13.4
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHH
Q psy7068 318 LAQIWNLADMDSDGQLSCDEFVLAM 342 (487)
Q Consensus 318 L~~Iw~l~D~D~DG~LdfeEFl~aM 342 (487)
++.+|+.+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHH
Confidence 3445555555555555555555544
No 108
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.57 E-value=0.22 Score=47.64 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=71.2
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHcC--------------------------------------------------
Q psy7068 283 KYTQLFNTTDRTRSGFLSGPQARNIMVATG-------------------------------------------------- 312 (487)
Q Consensus 283 k~~qiF~~lD~D~dG~Is~eELk~~L~~sG-------------------------------------------------- 312 (487)
.+.+...-+|+|+||.|..-|--.-|+.+|
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 466777779999999999988665555432
Q ss_pred -----CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCc
Q psy7068 313 -----LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWN 387 (487)
Q Consensus 313 -----L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~ 387 (487)
+..+.+++||..++..+.+.|++.|....++--.... ..-.|.
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~--------------------------------D~~GW~ 135 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNAN--------------------------------DPFGWF 135 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccC--------------------------------Ccchhh
Confidence 1235678999999988888999999877664211100 011254
Q ss_pred cchhHHHHHHHHhhhcCCCCCcccHHHHHHHHH
Q psy7068 388 VSRHERTRFETHFQAMKPVNGIVTGDQVKGFLM 420 (487)
Q Consensus 388 ~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~ 420 (487)
. ...++..+|...+|.||+|.++++|.++.
T Consensus 136 a---~~~EW~~~y~L~~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 136 A---AFFEWGALYILAKDKDGFLSKEDIRGVYD 165 (174)
T ss_pred h---hhhHHHHHHHHHcCcCCcEeHHHHhhhcc
Confidence 3 34455566655689999999999998764
No 109
>KOG1707|consensus
Probab=94.55 E-value=0.39 Score=53.58 Aligned_cols=163 Identities=15% Similarity=0.242 Sum_probs=99.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc---CCCHHHHHHHHHHhCCC-----CCCCccHHHHHHHHHH
Q psy7068 273 EWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVAT---GLSQGILAQIWNLADMD-----SDGQLSCDEFVLAMHL 344 (487)
Q Consensus 273 ~w~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~s---GL~e~eL~~Iw~l~D~D-----~DG~LdfeEFl~aM~L 344 (487)
.-.+.+.-+..+.++|+..|.|.||.++..|+-.+-++- .+...+++.+-...+.. .+..++..-|+..-.+
T Consensus 186 ~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 186 EQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred cccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 335777888999999999999999999999998876553 35555555555444322 2345666666644322
Q ss_pred h-HhhhC----------CCCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccH
Q psy7068 345 C-DLAKG----------GEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTG 412 (487)
Q Consensus 345 v-~~a~~----------g~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~ 412 (487)
. .+... ++.=..+|-.++++|.+...-- + --.+++.-...+..+|.. |.|+||-++.
T Consensus 266 fiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~------~-----s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p 334 (625)
T KOG1707|consen 266 FIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPD------Q-----SVELSPKGYRFLVDVFEKFDRDNDGALSP 334 (625)
T ss_pred HHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCC------c-----ceeccHHHHHHHHHHHHhccCCCCCCcCH
Confidence 1 21111 1222223444444433333100 0 022445555667788887 5999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH------HhcCCCCCceeHHHHHHH
Q psy7068 413 DQVKGFLMQSGLPVATLGQIWS------LADTDQDGKMNINEFVIA 452 (487)
Q Consensus 413 eELr~vL~~~GL~eeeL~~I~~------l~D~D~DGkIS~dEFv~a 452 (487)
+||...|...+-.. |. ..-.+..|.++|+-|+..
T Consensus 335 ~El~~LF~~~P~~p------W~~~~~~~~t~~~~~G~ltl~g~l~~ 374 (625)
T KOG1707|consen 335 EELKDLFSTAPGSP------WTSSPYKDSTVKNERGWLTLNGFLSQ 374 (625)
T ss_pred HHHHHHhhhCCCCC------CCCCcccccceecccceeehhhHHHH
Confidence 99999999664111 21 011236899999999863
No 110
>KOG3866|consensus
Probab=93.72 E-value=0.22 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=18.0
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHH
Q psy7068 430 GQIWSLADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 430 ~~I~~l~D~D~DGkIS~dEFv~aM 453 (487)
+++++.+|.|+|-.|+.+||+..-
T Consensus 299 EHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 299 EHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred HHHHHhcccchhhhhhHHHHHhhh
Confidence 456777888888888888887654
No 111
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=93.55 E-value=0.14 Score=42.07 Aligned_cols=60 Identities=13% Similarity=0.288 Sum_probs=50.4
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHc----CCCHHHHHHHHHHhCCC----CCCCccHHHHHHHHH
Q psy7068 283 KYTQLFNTTDRTRSGFLSGPQARNIMVAT----GLSQGILAQIWNLADMD----SDGQLSCDEFVLAMH 343 (487)
Q Consensus 283 k~~qiF~~lD~D~dG~Is~eELk~~L~~s----GL~e~eL~~Iw~l~D~D----~DG~LdfeEFl~aM~ 343 (487)
+++.+|+.+-. +.+.|+.++|..+|+.- .++.+++++|+..+..+ ..+.|++++|...|.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 36789999955 89999999999999876 35789999999987544 479999999998874
No 112
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.48 E-value=0.38 Score=44.90 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=48.4
Q ss_pred CCCCCcccHHHHHHHHHhCC-----CCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHHhhcC
Q psy7068 404 KPVNGIVTGDQVKGFLMQSG-----LPVATLGQIWSLADTDQDGKMNINEFVIACKLISNKLRG 462 (487)
Q Consensus 404 kD~DG~IS~eELr~vL~~~G-----L~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~k~~G 462 (487)
+.....|+...|.+++++.+ ++..+++-||..+-..+..+|+|++|+.+|..|-.+...
T Consensus 13 ~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~ 76 (154)
T PF05517_consen 13 KKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGK 76 (154)
T ss_dssp TSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSC
T ss_pred CCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhc
Confidence 67777899999999999776 577899999999876777789999999999988877644
No 113
>KOG4578|consensus
Probab=92.38 E-value=0.11 Score=54.24 Aligned_cols=61 Identities=13% Similarity=0.237 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHH---HHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q psy7068 283 KYTQLFNTTDRTRSGFLSGPQARNI---MVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343 (487)
Q Consensus 283 k~~qiF~~lD~D~dG~Is~eELk~~---L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~ 343 (487)
...-.|+.+|+|+++.|+..|.+.| +.+-.-+..=.+++++..|.|+|-+|+++|+..++-
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 4566799999999999999986554 444444566677899999999999999999988763
No 114
>KOG0042|consensus
Probab=92.27 E-value=0.26 Score=54.66 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=66.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC--CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhH
Q psy7068 273 EWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCD 346 (487)
Q Consensus 273 ~w~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sG--L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~ 346 (487)
..-+++++.++++..|..+|.|+.|++..+++..+|+..+ .+++.+.++.+.+|.+..|.+..+||...|.-+.
T Consensus 584 ~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 584 PIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred ccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 3457999999999999999999999999999999998874 7899999999999999999999999998886443
No 115
>KOG3555|consensus
Probab=91.52 E-value=0.26 Score=51.77 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q psy7068 275 AVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAM 342 (487)
Q Consensus 275 ~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM 342 (487)
.|.+.=+..+.-.|+++|.|.||+|+..|++.+- ++-.+.=++.+|+..|..+||.|+-+|++.++
T Consensus 243 s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~--ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 243 SILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE--LDKNEACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred ccCcchhhhhhhhhhccccccccccCHHHhhhhh--ccCchhHHHHHHhhhcccccCccccchhhhhh
Confidence 3455566777889999999999999999999874 34456778999999999999999999998775
No 116
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=91.32 E-value=0.67 Score=43.29 Aligned_cols=65 Identities=11% Similarity=0.184 Sum_probs=49.9
Q ss_pred HHHHHHh---CCCCCCcccHHHHHHHHHHcC-----CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhh
Q psy7068 285 TQLFNTT---DRTRSGFLSGPQARNIMVATG-----LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAK 349 (487)
Q Consensus 285 ~qiF~~l---D~D~dG~Is~eELk~~L~~sG-----L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~ 349 (487)
+++|..| -......|+...+..+++..+ ++..++.-||..+-..+..+|+|++|+.+|..+....
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~ 74 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKK 74 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHh
Confidence 4555555 455677899999999999986 4788999999998766667899999999998776544
No 117
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=91.32 E-value=2 Score=41.33 Aligned_cols=124 Identities=20% Similarity=0.175 Sum_probs=73.1
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHh--------------HhhhCCCCCCCCCCCCCCChhhhh-------hccch
Q psy7068 316 GILAQIWNLADMDSDGQLSCDEFVLAMHLC--------------DLAKGGEKIPVPLPIDMIPPAFRR-------QRQNS 374 (487)
Q Consensus 316 ~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv--------------~~a~~g~~lP~~LP~~LvPps~r~-------~~~ss 374 (487)
..|++-..-+|.|+||.|.--|=...++.+ .....-...|..+|.. .++. ..+.|
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P----~f~Iyi~nIhk~kHGS 82 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDP----FFRIYIKNIHKGKHGS 82 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCC----ceeEEeecccccccCC
Confidence 457777788999999999877743332211 1112222333333332 2322 12222
Q ss_pred hhhhhcccCCCCccchhHHHHHHHHhhhc-CCCCCcccHHHHHHHHHhC-------C--CCHHHHHHHHHHhcCCCCCce
Q psy7068 375 VTLAANVAMDPWNVSRHERTRFETHFQAM-KPVNGIVTGDQVKGFLMQS-------G--LPVATLGQIWSLADTDQDGKM 444 (487)
Q Consensus 375 ~~s~~s~~~d~W~~s~edk~~~~~iF~~d-kD~DG~IS~eELr~vL~~~-------G--L~eeeL~~I~~l~D~D~DGkI 444 (487)
.+. .+..+... .-.++++||.+. +.+.+.||..|+.+++..- | -..-|...+|.++ .|.||.|
T Consensus 83 DSg--~YD~eGrF----vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l 155 (174)
T PF05042_consen 83 DSG--AYDTEGRF----VPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFL 155 (174)
T ss_pred Ccc--ccccCCcC----CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcE
Confidence 221 11111111 236899999986 7788999999999999842 2 2245566777776 4779999
Q ss_pred eHHHHH
Q psy7068 445 NINEFV 450 (487)
Q Consensus 445 S~dEFv 450 (487)
.+|.-.
T Consensus 156 ~Ke~iR 161 (174)
T PF05042_consen 156 SKEDIR 161 (174)
T ss_pred eHHHHh
Confidence 988754
No 118
>PLN02952 phosphoinositide phospholipase C
Probab=90.97 E-value=0.96 Score=50.99 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=45.0
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHhCC----CCHHHHHHHHHHhc-------CCCCCceeHHHHHHHHH
Q psy7068 392 ERTRFETHFQAMKPVNGIVTGDQVKGFLMQSG----LPVATLGQIWSLAD-------TDQDGKMNINEFVIACK 454 (487)
Q Consensus 392 dk~~~~~iF~~dkD~DG~IS~eELr~vL~~~G----L~eeeL~~I~~l~D-------~D~DGkIS~dEFv~aM~ 454 (487)
.+.++..+|..+..+++.|+.++|.++|.... .+.+++++|+..+- ..+...++++.|..+|.
T Consensus 36 ~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 36 PPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ChHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 45677888887755668999999999998542 55666777765431 12334699999998874
No 119
>KOG4666|consensus
Probab=90.62 E-value=0.51 Score=49.39 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=72.5
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHc-C--CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCC
Q psy7068 282 LKYTQLFNTTDRTRSGFLSGPQARNIMVAT-G--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPL 358 (487)
Q Consensus 282 ~k~~qiF~~lD~D~dG~Is~eELk~~L~~s-G--L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~L 358 (487)
.+++..|..||.+++|.++..|-...+.-+ | .....++--|++++.+.||.+.-++|..++..+- +.+
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l----gv~----- 329 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL----GVE----- 329 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc----Ccc-----
Confidence 678999999999999999988765555443 3 3577888999999999999999988876664222 111
Q ss_pred CCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCC
Q psy7068 359 PIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSG 423 (487)
Q Consensus 359 P~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~G 423 (487)
..+.-.+|.. +...+|+|+..+|++++...+
T Consensus 330 ----------------------------------~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 330 ----------------------------------VLRVPVLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred ----------------------------------eeeccccchhhhcccCcceeHHHHHHHHHhCc
Confidence 0111234554 367789999999999987554
No 120
>KOG0035|consensus
Probab=90.42 E-value=1.6 Score=50.97 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHH---H-HHH---HHHHhCCCCCCCccHHHHHHHHHHhH
Q psy7068 276 VPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQG---I-LAQ---IWNLADMDSDGQLSCDEFVLAMHLCD 346 (487)
Q Consensus 276 lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~---e-L~~---Iw~l~D~D~DG~LdfeEFl~aM~Lv~ 346 (487)
+++....+|+.+|+.+|+...|.++.+++...|..+|...+ + +.+ |.+..|.+.-|.++|.||...|...+
T Consensus 741 ~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 741 TSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred hhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 45667789999999999999999999999999999987422 1 333 44445666668999999999986444
No 121
>KOG0169|consensus
Probab=89.66 E-value=2.4 Score=48.69 Aligned_cols=98 Identities=10% Similarity=0.145 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHH
Q psy7068 315 QGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERT 394 (487)
Q Consensus 315 e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~ 394 (487)
+.-+..+|..+|.+++|.+++.|-..++..+.... ...
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l------------------------------------------~~~ 172 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQL------------------------------------------SES 172 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhh------------------------------------------hHH
Confidence 45678899999999999999999877765443311 112
Q ss_pred HHHHHhhh-cCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHH
Q psy7068 395 RFETHFQA-MKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLI 456 (487)
Q Consensus 395 ~~~~iF~~-dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV 456 (487)
+...+|+. +...++.+..+++.++........ ++..+|..+-.+ .+.++.++++.++...
T Consensus 173 ~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp-ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 173 KARRLFKESDNSQTGKLEEEEFVKFRKELTKRP-EVYFLFVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred HHHHHHHHHHhhccceehHHHHHHHHHhhccCc-hHHHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 33344543 356789999999999998877666 788877776644 7788888887777655
No 122
>KOG0042|consensus
Probab=87.74 E-value=1 Score=50.26 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=61.8
Q ss_pred CccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhC--CCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHH
Q psy7068 386 WNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQS--GLPVATLGQIWSLADTDQDGKMNINEFVIACKLIS 457 (487)
Q Consensus 386 W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~--GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~ 457 (487)
-.+++++-.++..-|.. |+|+.|+++.+++.++|++. +++++.+.++.+.+|.+-+|.+...||..+|--++
T Consensus 585 i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 585 IKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred cccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 34678888888888876 58899999999999999966 48999999999999999999999999988775443
No 123
>PRK14136 recX recombination regulator RecX; Provisional
Probab=87.17 E-value=12 Score=39.09 Aligned_cols=134 Identities=12% Similarity=0.067 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCC
Q psy7068 279 ASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPL 358 (487)
Q Consensus 279 eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~L 358 (487)
++...+...++.+-. -.-+..||..-|.+.+++.+.++.++..+-. .|.||=..|...+-....
T Consensus 160 ~~~~lk~kAL~lLSr---ReRSe~ELr~KL~kkG~~ee~IE~VIerLke--~gYLDDeRFAesyVr~R~----------- 223 (309)
T PRK14136 160 PARSLKGRALGYLSR---REYSRAELARKLAPYADESDSVEPLLDALER--EGWLSDARFAESLVHRRA----------- 223 (309)
T ss_pred cHHHHHHHHHHHhhc---ccccHHHHHHHHHHcCCCHHHHHHHHHHHHH--cCCcCHHHHHHHHHHHHh-----------
Confidence 345556666766644 4557899999999999999999998877654 478998888876531100
Q ss_pred CCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhhcCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhcC
Q psy7068 359 PIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADT 438 (487)
Q Consensus 359 P~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~ 438 (487)
..-| ..-|+.-|++.|++.+.|++.+..++
T Consensus 224 ----------------------------------------------~kkG---p~rIrqELrQKGId~eLIEqALeeie- 253 (309)
T PRK14136 224 ----------------------------------------------SRVG---SARIVSELKRHAVGDALVESVGAQLR- 253 (309)
T ss_pred ----------------------------------------------hchh---HHHHHHHHHHcCCCHHHHHHHHHhcc-
Confidence 0012 23456667777899988888887542
Q ss_pred CCCCceeHHHHHHHHHHHHHhhcCCCCCCCCChhHHHhhcccccccC
Q psy7068 439 DQDGKMNINEFVIACKLISNKLRGFDIPPTLPVSLMQSLAGKDKTYD 485 (487)
Q Consensus 439 D~DGkIS~dEFv~aM~LV~~k~~G~~~P~sLP~~L~~sl~~~~~~~~ 485 (487)
.+||..+..++.+|.+...--...=..++..|-+|..+||
T Consensus 254 -------EDE~E~A~~L~eKK~~~~~~d~kek~K~iRfL~rRGFS~D 293 (309)
T PRK14136 254 -------ETEFERAQAVWRKKFGALPQTPAERAKQARFLAARGFSSA 293 (309)
T ss_pred -------HhHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHCCCCHH
Confidence 2567788888877764321110111233444555555544
No 124
>KOG3555|consensus
Probab=86.93 E-value=0.94 Score=47.76 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=76.7
Q ss_pred CCCCHHHHH----HHHHHHHHhCCCCCCcccHHHHHHHHHH---cCC--CHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q psy7068 274 WAVPHASKL----KYTQLFNTTDRTRSGFLSGPQARNIMVA---TGL--SQGILAQIWNLADMDSDGQLSCDEFVLAMHL 344 (487)
Q Consensus 274 w~lt~eEk~----k~~qiF~~lD~D~dG~Is~eELk~~L~~---sGL--~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~L 344 (487)
.+-+..|.. +|+..|..+=.|.++......+...-.. +-+ =.+++.-||+..|.|.|+.|+..|...+
T Consensus 199 ~~Ct~qeL~~lg~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I--- 275 (434)
T KOG3555|consen 199 YACTDQELRRLGNRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAI--- 275 (434)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhh---
Confidence 445566653 5688899887777777666554443222 112 2578999999999999999999996543
Q ss_pred hHhhhCCCCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhCC
Q psy7068 345 CDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQSG 423 (487)
Q Consensus 345 v~~a~~g~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~G 423 (487)
+..++ ..-++.+|+. |...||.|+.+|.-.-|.+.+
T Consensus 276 -~ldkn------------------------------------------E~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 276 -ELDKN------------------------------------------EACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred -hccCc------------------------------------------hhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 22111 1235567776 477899999999999998877
Q ss_pred CC-HHHHHHHH
Q psy7068 424 LP-VATLGQIW 433 (487)
Q Consensus 424 L~-eeeL~~I~ 433 (487)
.+ .+++.+|-
T Consensus 313 ~pc~~e~~riq 323 (434)
T KOG3555|consen 313 PPCQAELCRIQ 323 (434)
T ss_pred CccccHHHHHH
Confidence 44 45555543
No 125
>KOG3866|consensus
Probab=86.73 E-value=1.2 Score=46.57 Aligned_cols=59 Identities=15% Similarity=0.283 Sum_probs=44.8
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHc-----C--CCHHH-----------HHHHHHHhCCCCCCCccHHHHHHHHH
Q psy7068 285 TQLFNTTDRTRSGFLSGPQARNIMVAT-----G--LSQGI-----------LAQIWNLADMDSDGQLSCDEFVLAMH 343 (487)
Q Consensus 285 ~qiF~~lD~D~dG~Is~eELk~~L~~s-----G--L~e~e-----------L~~Iw~l~D~D~DG~LdfeEFl~aM~ 343 (487)
+-.|..+|.|+||+++..||..+|.+- . -.+++ -+.+++.+|+|.|..|+.+||+..-.
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 346888999999999999999988653 1 11111 13467889999999999999997653
No 126
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=85.70 E-value=4.3 Score=35.05 Aligned_cols=60 Identities=12% Similarity=0.207 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHc-------------CCCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q psy7068 281 KLKYTQLFNTTDRTRSGFLSGPQARNIMVAT-------------GLSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343 (487)
Q Consensus 281 k~k~~qiF~~lD~D~dG~Is~eELk~~L~~s-------------GL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~ 343 (487)
.+||+-+|..+ .|.+|.++...+..+|+.. |-.+..++..|... ..+-.|+.++|+..|.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 36899999999 7899999999998888763 34577888888876 3456799999999885
No 127
>KOG4578|consensus
Probab=84.21 E-value=1 Score=47.29 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=44.8
Q ss_pred hhh-cCCCCCcccHHH---HHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q psy7068 400 FQA-MKPVNGIVTGDQ---VKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 400 F~~-dkD~DG~IS~eE---Lr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM 453 (487)
|.. |+|+++-|...| |++++.+..-...-...+++.+|.|+|-+|+++|+..++
T Consensus 339 F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 339 FNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred eeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhh
Confidence 444 589999999999 556666655666678899999999999999999998876
No 128
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=82.06 E-value=0.89 Score=40.47 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHc----CCCHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q psy7068 283 KYTQLFNTTDRTRSGFLSGPQARNIMVAT----GLSQGILAQIWNLADMDSDGQLSCDEFVLAM 342 (487)
Q Consensus 283 k~~qiF~~lD~D~dG~Is~eELk~~L~~s----GL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM 342 (487)
.+-.+.-.+=. -||.|+.+|...+.... +++..+...+...++.-....+++++|+..+
T Consensus 25 a~~~ll~~~a~-aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 87 (140)
T PF05099_consen 25 ALLALLAAVAK-ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLREL 87 (140)
T ss_dssp HHHHHHHHHHH-TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 33334444323 68999998877665544 6677777777777665555567788887654
No 129
>KOG2243|consensus
Probab=81.75 E-value=2 Score=51.90 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=50.1
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHcC-CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q psy7068 288 FNTTDRTRSGFLSGPQARNIMVATG-LSQGILAQIWNLADMDSDGQLSCDEFVLAMHL 344 (487)
Q Consensus 288 F~~lD~D~dG~Is~eELk~~L~~sG-L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~L 344 (487)
|+.+|+|+.|.|+..++..+|...+ .++.+++-+..-+..|.+..++|+||+.-+|.
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 6779999999999999999987764 67888888888888898999999999988764
No 130
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=79.26 E-value=16 Score=37.15 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=60.0
Q ss_pred CCCCcccHHHHH---HHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCCCCChhhhhh
Q psy7068 294 TRSGFLSGPQAR---NIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQ 370 (487)
Q Consensus 294 D~dG~Is~eELk---~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~LvPps~r~~ 370 (487)
.-||.|+..|+. .++..++++.++-+...++++..+....++++|+..+..... ..
T Consensus 67 kADG~Vse~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~---~r------------------ 125 (267)
T PRK09430 67 KAKGRVTEADIRIASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCG---GR------------------ 125 (267)
T ss_pred hcCCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhc---cc------------------
Confidence 378999999875 445556888777333334444444445889999887753331 00
Q ss_pred ccchhhhhhcccCCCCccchhHHHH-HHHHhhhcCCCCCcccHHH---HHHHHHhCCCCHHHHHHHHHHh
Q psy7068 371 RQNSVTLAANVAMDPWNVSRHERTR-FETHFQAMKPVNGIVTGDQ---VKGFLMQSGLPVATLGQIWSLA 436 (487)
Q Consensus 371 ~~ss~~s~~s~~~d~W~~s~edk~~-~~~iF~~dkD~DG~IS~eE---Lr~vL~~~GL~eeeL~~I~~l~ 436 (487)
.+.... ++-+|.. .=-||.|+..| |+++-.-+|++..+...+...+
T Consensus 126 -------------------~~l~~~lL~~l~~v-A~ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~ 175 (267)
T PRK09430 126 -------------------FDLLRMFLEIQIQA-AFADGSLHPNERQVLYVIAEELGFSRFQFDQLLRMM 175 (267)
T ss_pred -------------------HHHHHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 011111 1223332 22458898888 4445557789988887776653
No 131
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=78.37 E-value=10 Score=32.09 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=33.1
Q ss_pred CCCcccHHHHH---HHHHH-cCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q psy7068 295 RSGFLSGPQAR---NIMVA-TGLSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343 (487)
Q Consensus 295 ~dG~Is~eELk---~~L~~-sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~ 343 (487)
.||.++..|.. .+|.. .+++.++..++...+....+...++.+|...+.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46777776643 34444 477777777777777666666778888877653
No 132
>KOG1923|consensus
Probab=77.00 E-value=49 Score=38.57 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHH-HHH-HHHc--CCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHh
Q psy7068 279 ASKLKYTQLFNTTDRTRSGFLSGPQA-RNI-MVAT--GLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDL 347 (487)
Q Consensus 279 eEk~k~~qiF~~lD~D~dG~Is~eEL-k~~-L~~s--GL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~ 347 (487)
-+.++++..|..+- .+|.+-.+.. +.. +.+. +..-.+-.+++++.-+-. ..+.++|.+.+.|.++.
T Consensus 401 lD~~~~ee~Fk~~~--s~~~~~~e~~a~~~~~~ka~qk~tLle~~R~~nlaiT~R-~~~~~~~V~~Aih~~dL 470 (830)
T KOG1923|consen 401 LDFSRFEEQFKILK--SNGQILDESSAVSKAMTKAPQKRTLLEQRRLFNLAITRR-VQMKAKEVMAAIHPLDL 470 (830)
T ss_pred hhHHHHHHHHHhhh--cccchhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhh-hcCchHHHHHHhhhccc
Confidence 35567788887742 4454333322 111 1111 223344567777776666 78999999998886653
No 133
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=76.53 E-value=2 Score=36.43 Aligned_cols=26 Identities=54% Similarity=0.831 Sum_probs=22.5
Q ss_pred chhhhhhhhhhhhHHHHHHHhhhhcC
Q psy7068 24 SFEDKRKENYEKGQAELERRRKALEL 49 (487)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (487)
-||.+-||--|+-..|||.||||||.
T Consensus 58 EfEqRakehqErDEkElEERrKALe~ 83 (86)
T PF15437_consen 58 EFEQRAKEHQERDEKELEERRKALEM 83 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 37777888888889999999999985
No 134
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=76.02 E-value=0.39 Score=39.44 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=35.9
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhcCC---CCCceeHHHHHHHH
Q psy7068 394 TRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTD---QDGKMNINEFVIAC 453 (487)
Q Consensus 394 ~~~~~iF~~dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D---~DGkIS~dEFv~aM 453 (487)
+...+.|+...++.+||+.+||++.|..... +--+.+|=...+.+ .-|.++|..|+..|
T Consensus 6 eqv~~aFr~lA~~KpyVT~~dLr~~l~pe~a-ey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 6 EQVEEAFRALAGGKPYVTEEDLRRSLTPEQA-EYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp HHHHHHHHHHCTSSSCEEHHHHHHHS-CCCH-HHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHcCcHHH-HHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 3466778777889999999999998764332 22222222222222 12779999998644
No 135
>KOG2243|consensus
Probab=73.08 E-value=7.7 Score=47.43 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=52.4
Q ss_pred hhHHHHHHHHhhhc-------------CCCCCcccHHHHHHHHHhC-CCCHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q psy7068 390 RHERTRFETHFQAM-------------KPVNGIVTGDQVKGFLMQS-GLPVATLGQIWSLADTDQDGKMNINEFVIACK 454 (487)
Q Consensus 390 ~edk~~~~~iF~~d-------------kD~DG~IS~eELr~vL~~~-GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~ 454 (487)
.+...+|.++|.+. -|+.|.|+..||.+.+..- ..++.+++-++.-+..|.+..++|++|+.-+|
T Consensus 4041 vemilkffdmflklkdltssdtfkeydpdgkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4041 VEMILKFFDMFLKLKDLTSSDTFKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred HHHHHHHHHHHHHHhhccccccchhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 34555666666431 3788999999999999854 48899999999999999999999999998665
No 136
>KOG4347|consensus
Probab=73.01 E-value=4.6 Score=45.72 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHc--CCCHHHHHHHHHHhCCCCCCCccHHHH
Q psy7068 283 KYTQLFNTTDRTRSGFLSGPQARNIMVAT--GLSQGILAQIWNLADMDSDGQLSCDEF 338 (487)
Q Consensus 283 k~~qiF~~lD~D~dG~Is~eELk~~L~~s--GL~e~eL~~Iw~l~D~D~DG~LdfeEF 338 (487)
-..++|+.+|.+++|.|+..++...|..+ |-..+-+.-+|+++|.+.| .++.+|-
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 34667777777777777777776666554 2233445566777777776 6666664
No 137
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=72.16 E-value=18 Score=31.26 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=39.2
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHh-------C------CCCHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q psy7068 394 TRFETHFQAMKPVNGIVTGDQVKGFLMQ-------S------GLPVATLGQIWSLADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 394 ~~~~~iF~~dkD~DG~IS~eELr~vL~~-------~------GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM 453 (487)
++|+-+|....|.+|.++...|..+|.+ . |-.+..+...|... ..+-.|+.++|+..|
T Consensus 3 dKyRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl 73 (90)
T PF09069_consen 3 DKYRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWL 73 (90)
T ss_dssp HHHHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHH
Confidence 4566689878999999999999888872 1 34566678888876 356779999999988
No 138
>KOG1924|consensus
Probab=72.03 E-value=18 Score=42.22 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=7.1
Q ss_pred CccHHHHHHHHHHh
Q psy7068 332 QLSCDEFVLAMHLC 345 (487)
Q Consensus 332 ~LdfeEFl~aM~Lv 345 (487)
.-.-+.|++.|.-|
T Consensus 761 l~e~EQF~vvm~~v 774 (1102)
T KOG1924|consen 761 LPEPEQFVVVMSQV 774 (1102)
T ss_pred CCCHHHHhHHHhhc
Confidence 34445566655433
No 139
>KOG1924|consensus
Probab=71.83 E-value=14 Score=43.14 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=8.5
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy7068 272 LEWAVPHASKLKYTQLFN 289 (487)
Q Consensus 272 ~~w~lt~eEk~k~~qiF~ 289 (487)
.=|.-..|++..-..+|.
T Consensus 643 cFWvkv~Edk~en~dlfa 660 (1102)
T KOG1924|consen 643 CFWVKVNEDKLENDDLFA 660 (1102)
T ss_pred ceeeecchhhccchHHHH
Confidence 346555555544344443
No 140
>PRK14137 recX recombination regulator RecX; Provisional
Probab=71.36 E-value=30 Score=33.79 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=76.1
Q ss_pred CcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCCCCChhhhhhccchhh
Q psy7068 297 GFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVT 376 (487)
Q Consensus 297 G~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~LvPps~r~~~~ss~~ 376 (487)
-.-+..||+.-|...+++.+.++.++..+-. .|.||=..|+..+.
T Consensus 53 R~rS~~ELr~KL~~kg~~~e~Ie~vI~rL~e--~gyLDD~rfAe~~~--------------------------------- 97 (195)
T PRK14137 53 RAMTAAELRAKLERRSEDEALVTEVLERVQE--LGYQDDAQVARAEN--------------------------------- 97 (195)
T ss_pred chhhHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHH---------------------------------
Confidence 3446789999999999999988888776543 46787777765431
Q ss_pred hhhcccCCCCccchhHHHHHHHHhhhcCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHH
Q psy7068 377 LAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLI 456 (487)
Q Consensus 377 s~~s~~~d~W~~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV 456 (487)
. . +.....-++.-|...|++.+.|++.+..+|.+ +++-.++.++
T Consensus 98 -------------------------~--~--k~~Gp~rI~~eL~qKGI~~~lI~~al~~~d~e-------de~e~a~~l~ 141 (195)
T PRK14137 98 -------------------------S--R--RGVGALRVRQTLRRRGVEETLIEETLAARDPQ-------EEQQEARNLL 141 (195)
T ss_pred -------------------------H--h--cCchHHHHHHHHHHcCCCHHHHHHHHHhcCch-------hHHHHHHHHH
Confidence 0 0 11234455666777899999999888866432 5777888888
Q ss_pred HHhhcCCCCCCCCChhHHHhhcccccccC
Q psy7068 457 SNKLRGFDIPPTLPVSLMQSLAGKDKTYD 485 (487)
Q Consensus 457 ~~k~~G~~~P~sLP~~L~~sl~~~~~~~~ 485 (487)
.++.....--...-..++..|-+|..+|+
T Consensus 142 ~KK~~~~~~~~~~k~K~~~~L~rRGFs~~ 170 (195)
T PRK14137 142 ERRWSSFARKRDPRASAYAFLARRGFSGA 170 (195)
T ss_pred HHhccccCcchhHHHHHHHHHHHCCCCHH
Confidence 77764322111112345666666666654
No 141
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=70.64 E-value=2.8 Score=37.86 Aligned_cols=31 Identities=23% Similarity=0.568 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q psy7068 313 LSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343 (487)
Q Consensus 313 L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~ 343 (487)
|++++++++|+.+-.|..|+|.|.||+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 6889999999999999999999999987653
No 142
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=69.40 E-value=21 Score=26.87 Aligned_cols=46 Identities=9% Similarity=0.149 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHH
Q psy7068 273 EWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWN 323 (487)
Q Consensus 273 ~w~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~ 323 (487)
.+.+++++...|...|.. +.+++.++...+...+|++...+...|.
T Consensus 4 r~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l~~~~V~~WF~ 49 (57)
T PF00046_consen 4 RTRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELGLTERQVKNWFQ 49 (57)
T ss_dssp SSSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-----hccccccccccccccccccccccccCHH
Confidence 356889999999999984 6899999999999999999999876664
No 143
>KOG1265|consensus
Probab=68.01 E-value=42 Score=39.87 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhc-CCCCCcccHHHHHHHHHhCC------------CCHHHHHHHHHHhcCCC----CCceeHHHHHHHHH
Q psy7068 392 ERTRFETHFQAM-KPVNGIVTGDQVKGFLMQSG------------LPVATLGQIWSLADTDQ----DGKMNINEFVIACK 454 (487)
Q Consensus 392 dk~~~~~iF~~d-kD~DG~IS~eELr~vL~~~G------------L~eeeL~~I~~l~D~D~----DGkIS~dEFv~aM~ 454 (487)
.|-++++||..+ .++.-+++.++|.+++.+.. +....+..|+..+..|. +|.|+-+-|+.++
T Consensus 219 pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl- 297 (1189)
T KOG1265|consen 219 PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYL- 297 (1189)
T ss_pred CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHh-
Confidence 345678899886 67779999999999998432 34567788888876654 5889999998876
Q ss_pred HHHHhhcCCCCCCCCChhHH
Q psy7068 455 LISNKLRGFDIPPTLPVSLM 474 (487)
Q Consensus 455 LV~~k~~G~~~P~sLP~~L~ 474 (487)
-|.+-|.+-+..|.
T Consensus 298 ------~gdEn~i~a~~~l~ 311 (1189)
T KOG1265|consen 298 ------MGDENAIVALDKLD 311 (1189)
T ss_pred ------hCCccccccHHHHH
Confidence 46666655555443
No 144
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=68.00 E-value=69 Score=29.39 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=84.5
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCC
Q psy7068 282 LKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPID 361 (487)
Q Consensus 282 ~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~ 361 (487)
..+..++..+.. ---+..|++.-|...|++.+.++.+...+- ..|.|+-..|...+..-.
T Consensus 12 ~a~~~al~~L~~---r~~s~~el~~kL~~kg~~~~~i~~vl~~l~--~~~~ldD~~~a~~~~~~~--------------- 71 (157)
T PRK00117 12 SARARALRLLAR---REHSRAELRRKLAAKGFSEEVIEAVLDRLK--EEGLLDDERFAESFVRSR--------------- 71 (157)
T ss_pred HHHHHHHHHHcc---chhHHHHHHHHHHhcCCCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHH---------------
Confidence 345556666644 345778999999999999998888877653 346677666665432100
Q ss_pred CCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhhcCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhcCCCC
Q psy7068 362 MIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQD 441 (487)
Q Consensus 362 LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D~D 441 (487)
.........++.-|...|++.+.++.++..++
T Consensus 72 --------------------------------------------~~~~~g~~~I~~~L~~kGi~~~~I~~~l~~~~---- 103 (157)
T PRK00117 72 --------------------------------------------ARKGYGPRRIRQELRQKGVDREIIEEALAELD---- 103 (157)
T ss_pred --------------------------------------------HhCCchHHHHHHHHHHcCCCHHHHHHHHHHcC----
Confidence 01223466778888889999999999998875
Q ss_pred CceeHHHHHHHHHHHHHhhcCCC-CCCCCChhHHHhhcccccccC
Q psy7068 442 GKMNINEFVIACKLISNKLRGFD-IPPTLPVSLMQSLAGKDKTYD 485 (487)
Q Consensus 442 GkIS~dEFv~aM~LV~~k~~G~~-~P~sLP~~L~~sl~~~~~~~~ 485 (487)
.+|+-.+..++.++..... .+..+=--++..|-+|..+||
T Consensus 104 ----~d~~e~a~~~~~k~~~~~~~~~~~~k~Ki~~~L~rkGF~~~ 144 (157)
T PRK00117 104 ----IDWEELARELARKKFRRPLPDDAKEKAKLVRFLARRGFSMD 144 (157)
T ss_pred ----ccHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCHH
Confidence 2345666667766654322 111222456777777777765
No 145
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=67.43 E-value=92 Score=29.16 Aligned_cols=108 Identities=14% Similarity=0.192 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHH---HHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCC
Q psy7068 278 HASKLKYTQLFNTTDRTRSGFLSGPQA---RNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKI 354 (487)
Q Consensus 278 ~eEk~k~~qiF~~lD~D~dG~Is~eEL---k~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~l 354 (487)
++++..|-.---.+-+ -||.++..|. +.+|...+++.++.+++... ..+-.++.-.|.... ..
T Consensus 20 ~~~~~~~~~~Ll~iAk-ADG~Vse~Ei~~~~~~m~~~~L~~e~~~~aie~---~~~~~L~~~~~~~~~--~~-------- 85 (150)
T cd07311 20 NQDKLAYLKALLVCAK-GDGVISPEERDWAIGYAAARGGDADMVEELKEY---TADEDLEEVDFRSPN--IK-------- 85 (150)
T ss_pred cccHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHh---CccccHHHHHHHHHh--cc--------
Confidence 5666655443333323 6999999885 55666778998888888877 223333333332111 00
Q ss_pred CCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhhcCCCCCcccHHH---HHHHHHhCCCCHHHHHH
Q psy7068 355 PVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQ---VKGFLMQSGLPVATLGQ 431 (487)
Q Consensus 355 P~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~dkD~DG~IS~eE---Lr~vL~~~GL~eeeL~~ 431 (487)
...+..+...+.. .=-||.++..| |+++...+|++..++..
T Consensus 86 -----------------------------------~~~~~ll~~~l~v-A~ADG~l~~~E~~lL~~iA~~LGis~~~~~~ 129 (150)
T cd07311 86 -----------------------------------SSRRALLYDAIQV-CAADGELSPGEVAAVRKAASLLGISEDEVQK 129 (150)
T ss_pred -----------------------------------hhHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 1122222223322 23458888877 55666678999988888
Q ss_pred HHHH
Q psy7068 432 IWSL 435 (487)
Q Consensus 432 I~~l 435 (487)
|.+.
T Consensus 130 l~~~ 133 (150)
T cd07311 130 LEEI 133 (150)
T ss_pred HHHH
Confidence 8765
No 146
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=66.45 E-value=25 Score=26.25 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHH
Q psy7068 274 WAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNL 324 (487)
Q Consensus 274 w~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l 324 (487)
..+++++...|+..|.. +.+.+.++...+....|++..++..-|..
T Consensus 5 ~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (59)
T cd00086 5 TRFTPEQLEELEKEFEK-----NPYPSREEREELAKELGLTERQVKIWFQN 50 (59)
T ss_pred CcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 35788899999999987 67999999999999999999998877653
No 147
>PLN02952 phosphoinositide phospholipase C
Probab=62.83 E-value=44 Score=38.04 Aligned_cols=52 Identities=10% Similarity=0.051 Sum_probs=42.0
Q ss_pred CCCcccHHHHHHHHHHcCC----CHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHh
Q psy7068 295 RSGFLSGPQARNIMVATGL----SQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDL 347 (487)
Q Consensus 295 ~dG~Is~eELk~~L~~sGL----~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~ 347 (487)
+.|.++.+++..+.+.+.. ++.++..||..+-.++ +.|+.++|..+|..++.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCC
Confidence 4689999999888777653 6889999999986544 68999999999875553
No 148
>KOG4347|consensus
Probab=60.87 E-value=94 Score=35.70 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=46.4
Q ss_pred CCCCccchhHHHHHHHHhhh-cCCCCCcccHHHHHHHHHhC--CCCHHHHHHHHHHhcCCCCCceeHHHH
Q psy7068 383 MDPWNVSRHERTRFETHFQA-MKPVNGIVTGDQVKGFLMQS--GLPVATLGQIWSLADTDQDGKMNINEF 449 (487)
Q Consensus 383 ~d~W~~s~edk~~~~~iF~~-dkD~DG~IS~eELr~vL~~~--GL~eeeL~~I~~l~D~D~DGkIS~dEF 449 (487)
+.+|. ....-..++|+. |+.++|.|+..+|..-|..+ |...+.++-+|+++|.+.| .++.+|-
T Consensus 547 l~pw~---~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 547 LLPWA---VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred cCchh---HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 44576 233445567776 48899999999999888744 4455668888999999988 8888775
No 149
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.94 E-value=65 Score=30.34 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=41.1
Q ss_pred HHHHHhCCCCCCcccHHH---HHHHHHHc-CCCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q psy7068 286 QLFNTTDRTRSGFLSGPQ---ARNIMVAT-GLSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343 (487)
Q Consensus 286 qiF~~lD~D~dG~Is~eE---Lk~~L~~s-GL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~ 343 (487)
-+|..++. ||.++..| ++.+++.. |++..++..+......-+...+++-.|...|.
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 78888865 67788766 44555443 89999999888776655667888888887774
No 150
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=58.77 E-value=42 Score=32.45 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=30.4
Q ss_pred CcccHHHHHHHHHHcCCC---HHHH----HHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCC
Q psy7068 297 GFLSGPQARNIMVATGLS---QGIL----AQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEK 353 (487)
Q Consensus 297 G~Is~eELk~~L~~sGL~---e~eL----~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~ 353 (487)
..+..-++.+.+.++|+. ++++ ..|++....++.+.-+. +..+|...-.+++|+.
T Consensus 45 d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~dL--~~~AL~FRLLRqhGy~ 106 (183)
T PF01397_consen 45 DPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSWDEDNEEIDDL--YTTALRFRLLRQHGYY 106 (183)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTTTTTSHTSSCH--HHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhccccccccCch--hHHHHHHHHHHHcCCc
Confidence 566667899999999986 3444 44555444443222244 4455544444456654
No 151
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=57.46 E-value=17 Score=30.75 Aligned_cols=47 Identities=15% Similarity=0.242 Sum_probs=26.3
Q ss_pred CCcccHHHHHHH---HHh-CCCCHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q psy7068 407 NGIVTGDQVKGF---LMQ-SGLPVATLGQIWSLADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 407 DG~IS~eELr~v---L~~-~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM 453 (487)
||.++..|...+ |.+ .+++.++..+++..+....+...++.+|+..+
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 63 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLI 63 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 566666664332 333 36666666666666655555555666665543
No 152
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=57.07 E-value=73 Score=26.76 Aligned_cols=11 Identities=9% Similarity=0.371 Sum_probs=7.0
Q ss_pred ccHHHHHHHHH
Q psy7068 333 LSCDEFVLAMH 343 (487)
Q Consensus 333 LdfeEFl~aM~ 343 (487)
.++.+|...+.
T Consensus 53 ~~~~~~~~~l~ 63 (106)
T cd07316 53 FGLEEYARQFR 63 (106)
T ss_pred CCHHHHHHHHH
Confidence 56777766553
No 153
>KOG1707|consensus
Probab=56.32 E-value=18 Score=40.97 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHH------HhCCCCCCCccHHHHHHHHHH
Q psy7068 274 WAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWN------LADMDSDGQLSCDEFVLAMHL 344 (487)
Q Consensus 274 w~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~------l~D~D~DG~LdfeEFl~aM~L 344 (487)
-.+++.-.+.+..+|..+|.|+||-++.+|+..+|...+-.. |. ..-.+..|.|+++-|+..+.+
T Consensus 307 ~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~p------W~~~~~~~~t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 307 VELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSP------WTSSPYKDSTVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred eeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCC------CCCCcccccceecccceeehhhHHHHHHH
Confidence 357888899999999999999999999999999998874211 21 111236788999988876543
No 154
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=55.75 E-value=9.2 Score=34.66 Aligned_cols=30 Identities=17% Similarity=0.482 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q psy7068 424 LPVATLGQIWSLADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 424 L~eeeL~~I~~l~D~D~DGkIS~dEFv~aM 453 (487)
|++++.+.+|..+-.|..|.|.|.||+.-+
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kf 33 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKF 33 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHc
Confidence 678999999999999999999999999755
No 155
>KOG0843|consensus
Probab=54.60 E-value=87 Score=30.70 Aligned_cols=46 Identities=17% Similarity=0.393 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHH
Q psy7068 271 PLEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIW 322 (487)
Q Consensus 271 ~~~w~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw 322 (487)
-..-+.+.+|..+++..|+ +++||.+.|-+++.+.++|++.+++ ||
T Consensus 104 r~RT~ft~~Ql~~LE~~F~-----~~~Yvvg~eR~~LA~~L~LsetQVk-vW 149 (197)
T KOG0843|consen 104 RIRTAFTPEQLLKLEHAFE-----GNQYVVGAERKQLAQSLSLSETQVK-VW 149 (197)
T ss_pred ccccccCHHHHHHHHHHHh-----cCCeeechHHHHHHHHcCCChhHhh-hh
Confidence 4455789999999999996 7899999999999999999999986 55
No 156
>PLN02222 phosphoinositide phospholipase C 2
Probab=53.81 E-value=28 Score=39.48 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=44.9
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhCC----CCHHHHHHHHHHhcC-CCCCceeHHHHHHHHH
Q psy7068 394 TRFETHFQAMKPVNGIVTGDQVKGFLMQSG----LPVATLGQIWSLADT-DQDGKMNINEFVIACK 454 (487)
Q Consensus 394 ~~~~~iF~~dkD~DG~IS~eELr~vL~~~G----L~eeeL~~I~~l~D~-D~DGkIS~dEFv~aM~ 454 (487)
..+..+|..+.+ ++.++.++|.++|.+.. .+.+.++.||..+.. ..++.++++.|..+|.
T Consensus 25 ~ei~~if~~~~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 25 REIKTIFEKYSE-NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred HHHHHHHHHhcC-CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 456677877644 57999999999998652 456778888887532 3466799999999884
No 157
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=51.58 E-value=31 Score=28.46 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=34.4
Q ss_pred cccHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHH
Q psy7068 409 IVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLIS 457 (487)
Q Consensus 409 ~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~ 457 (487)
.|++..|..++.+ .++.+.++.|...++.=..++|+.+||+..|..|.
T Consensus 8 ~~~F~~L~~~l~~-~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IV 55 (70)
T PF12174_consen 8 WMPFPMLFSALSK-HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIV 55 (70)
T ss_pred cccHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3455555555543 46777788888888777899999999999887553
No 158
>PLN02230 phosphoinositide phospholipase C 4
Probab=51.15 E-value=37 Score=38.66 Aligned_cols=63 Identities=8% Similarity=0.113 Sum_probs=45.4
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHhCC-----CCHHHHHHHHHHhc-------CCCCCceeHHHHHHHHH
Q psy7068 392 ERTRFETHFQAMKPVNGIVTGDQVKGFLMQSG-----LPVATLGQIWSLAD-------TDQDGKMNINEFVIACK 454 (487)
Q Consensus 392 dk~~~~~iF~~dkD~DG~IS~eELr~vL~~~G-----L~eeeL~~I~~l~D-------~D~DGkIS~dEFv~aM~ 454 (487)
.+..+..+|..+.+++++|+.++|.++|.+.. .+.++.++|+..+- .-..+.++++.|..+|.
T Consensus 27 p~~ei~~lf~~~s~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 27 PVADVRDLFEKYADGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred CcHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 45667888888755558999999999999653 34566777775432 12345699999998773
No 159
>PLN02228 Phosphoinositide phospholipase C
Probab=51.01 E-value=38 Score=38.33 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=45.3
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHhCC----CCHHHHHHHHHHhcCC----CCCceeHHHHHHHHH
Q psy7068 392 ERTRFETHFQAMKPVNGIVTGDQVKGFLMQSG----LPVATLGQIWSLADTD----QDGKMNINEFVIACK 454 (487)
Q Consensus 392 dk~~~~~iF~~dkD~DG~IS~eELr~vL~~~G----L~eeeL~~I~~l~D~D----~DGkIS~dEFv~aM~ 454 (487)
.+.++..+|..+.++ +.|+.++|.++|.+.. ...+.+.+|+..+... ..|.++++.|..+|.
T Consensus 22 ~~~ei~~if~~~s~~-~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 22 PPVSIKRLFEAYSRN-GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CcHHHHHHHHHhcCC-CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 345667778766433 6899999999998652 4456688888877543 347799999998883
No 160
>PRK14135 recX recombination regulator RecX; Provisional
Probab=48.45 E-value=2.7e+02 Score=27.66 Aligned_cols=71 Identities=24% Similarity=0.362 Sum_probs=39.5
Q ss_pred CcccHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHHhhcCCC-CC-CCCChhHHHhhcccccccC
Q psy7068 408 GIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISNKLRGFD-IP-PTLPVSLMQSLAGKDKTYD 485 (487)
Q Consensus 408 G~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~k~~G~~-~P-~sLP~~L~~sl~~~~~~~~ 485 (487)
+.-...+++.-|...|++.+.++.++..++. ++.++ .+..++..+.+... .+ ...--.++..|.+|.++++
T Consensus 121 ~~~g~~~I~~kL~~kGi~~~~Ie~~l~~l~~--~~~~d-----~a~~~~~k~~~~~~~~~~~~~k~Ki~~~L~rkGf~~~ 193 (263)
T PRK14135 121 GDKGPRVIKQKLLQKGIEDEIIEEALSEYTE--EDQIE-----VAQKLAEKLLKKYQKLPFKALKQKIIQSLLTKGFSYE 193 (263)
T ss_pred cccchHHHHHHHHHcCCCHHHHHHHHHhCCh--hhHHH-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCHH
Confidence 3356678888888889999999988887632 22221 12222332222111 11 1222356777777777765
No 161
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=46.13 E-value=95 Score=22.91 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHH
Q psy7068 274 WAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNL 324 (487)
Q Consensus 274 w~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l 324 (487)
..++++++..|...|... -+.+.++...+....|++..++...|..
T Consensus 5 ~~~~~~~~~~L~~~f~~~-----~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (56)
T smart00389 5 TSFTPEQLEELEKEFQKN-----PYPSREEREELAAKLGLSERQVKVWFQN 50 (56)
T ss_pred CcCCHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHCcCHHHHHHhHHH
Confidence 347899999999999743 3899999999999999999988876653
No 162
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=45.89 E-value=39 Score=25.37 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=38.1
Q ss_pred CccchhHHHHHHHHhhhcCCCCCcccHHHHHHHHHhCCCCHHHHHHHHH
Q psy7068 386 WNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWS 434 (487)
Q Consensus 386 W~~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~ 434 (487)
+..+.+....++.+|.. +.+++.++...+...+||+...|..-|.
T Consensus 5 ~~~t~~q~~~L~~~f~~----~~~p~~~~~~~la~~l~l~~~~V~~WF~ 49 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE----NPYPSKEEREELAKELGLTERQVKNWFQ 49 (57)
T ss_dssp SSSSHHHHHHHHHHHHH----SSSCHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH----hccccccccccccccccccccccccCHH
Confidence 34577888889999964 7999999999999999999999987775
No 163
>KOG1264|consensus
Probab=45.88 E-value=85 Score=37.21 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=45.1
Q ss_pred CHHHHHH-HHHHHHHhCCCCCCcccHHHHHHHHHHcCC---CHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q psy7068 277 PHASKLK-YTQLFNTTDRTRSGFLSGPQARNIMVATGL---SQGILAQIWNLADMDSDGQLSCDEFVLAMH 343 (487)
Q Consensus 277 t~eEk~k-~~qiF~~lD~D~dG~Is~eELk~~L~~sGL---~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~ 343 (487)
++.+++. +++.|-.+|.+.--.|+..+++.+|...++ +...+.+-|.. |.-+.+.|+|+.|.....
T Consensus 138 ~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~ 207 (1267)
T KOG1264|consen 138 TPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYK 207 (1267)
T ss_pred ChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHH
Confidence 4556554 466777888878888999999999987764 23344343332 334566899999977654
No 164
>KOG0035|consensus
Probab=45.01 E-value=40 Score=39.92 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=48.5
Q ss_pred cchhHHHHHHHHhhhc-CCCCCcccHHHHHHHHHhCCCCHH---H-HHHH---HHHhcCCCCCceeHHHHHHHH
Q psy7068 388 VSRHERTRFETHFQAM-KPVNGIVTGDQVKGFLMQSGLPVA---T-LGQI---WSLADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 388 ~s~edk~~~~~iF~~d-kD~DG~IS~eELr~vL~~~GL~ee---e-L~~I---~~l~D~D~DGkIS~dEFv~aM 453 (487)
.++.....+..+|+.. +...|.++.+++...|+.+|...+ . ++++ +...|.+.-|.++|.+|...|
T Consensus 741 ~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl 814 (890)
T KOG0035|consen 741 TSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDL 814 (890)
T ss_pred hhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHh
Confidence 3555667777888764 777888999999999999984432 1 3444 444555666899999999887
No 165
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=43.96 E-value=2.5e+02 Score=25.40 Aligned_cols=43 Identities=9% Similarity=0.102 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc-CCCHHHHHHHHHH
Q psy7068 276 VPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVAT-GLSQGILAQIWNL 324 (487)
Q Consensus 276 lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~s-GL~e~eL~~Iw~l 324 (487)
|++.|.+-+.-+|+ .|.++..|+.+.|... ++....+..+.+.
T Consensus 2 Lt~~E~~VM~vlW~------~~~~t~~eI~~~l~~~~~~~~tTv~T~L~r 45 (130)
T TIGR02698 2 ISDAEWEVMRVVWT------LGETTSRDIIRILAEKKDWSDSTIKTLLGR 45 (130)
T ss_pred CCHHHHHHHHHHHc------CCCCCHHHHHHHHhhccCCcHHHHHHHHHH
Confidence 56777777777763 3457888888877543 5666666555543
No 166
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=43.84 E-value=12 Score=34.68 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=33.4
Q ss_pred CcccHHHHHHHHHhCCCCHHHHHHHHHHhc-------CCCCCceeHHHHHHHHHHHHHhhcCCCCCCCCChhHHHhhccc
Q psy7068 408 GIVTGDQVKGFLMQSGLPVATLGQIWSLAD-------TDQDGKMNINEFVIACKLISNKLRGFDIPPTLPVSLMQSLAGK 480 (487)
Q Consensus 408 G~IS~eELr~vL~~~GL~eeeL~~I~~l~D-------~D~DGkIS~dEFv~aM~LV~~k~~G~~~P~sLP~~L~~sl~~~ 480 (487)
+.||.+||.+.=.-+..+...|+++++.+. -+.++.|+|+.|..+|... -..|+|.-|=-.|.-|+.++
T Consensus 6 ~~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~y----Le~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTY----LEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp S-S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHH----TT-S--HHHHHHHHHHS---
T ss_pred eccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHH----HcCCCCHHHHHHHHHHHhCc
Confidence 456666655543322223334666666663 2345689999999999321 35557766666666666666
Q ss_pred cc
Q psy7068 481 DK 482 (487)
Q Consensus 481 ~~ 482 (487)
..
T Consensus 82 ~~ 83 (138)
T PF14513_consen 82 PP 83 (138)
T ss_dssp --
T ss_pred cc
Confidence 54
No 167
>KOG4004|consensus
Probab=43.50 E-value=8.1 Score=38.25 Aligned_cols=56 Identities=18% Similarity=0.356 Sum_probs=41.0
Q ss_pred HHHhCC-CCCCcccHHHHHHHHHHcCCC-HHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q psy7068 288 FNTTDR-TRSGFLSGPQARNIMVATGLS-QGILAQIWNLADMDSDGQLSCDEFVLAMHL 344 (487)
Q Consensus 288 F~~lD~-D~dG~Is~eELk~~L~~sGL~-e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~L 344 (487)
|-++|. -.||+++-.||..+-.- =++ +.=+..+|...|.|+||.|..+||.-++-+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap-~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gi 250 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAP-LIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGI 250 (259)
T ss_pred eccccCCCccccccccccccccCC-cccHHhhchhhhhcccCCCCCceeHHHhhcccCc
Confidence 555665 47899999888765211 133 334567899999999999999999887643
No 168
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=43.01 E-value=24 Score=29.39 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=28.9
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q psy7068 393 RTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTD 439 (487)
Q Consensus 393 k~~~~~iF~~dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D 439 (487)
+..+.++...- ...|+||..|+..+|-...++.+.+..|+..+...
T Consensus 6 ~~~i~~Li~~g-K~~G~lT~~eI~~~L~~~~~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 6 EEAIKKLIEKG-KKKGYLTYDEINDALPEDDLDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHHHHHHHHHH-HHHSS-BHHHHHHH-S-S---HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-hhcCcCCHHHHHHHcCccCCCHHHHHHHHHHHHHC
Confidence 34444444332 25799999999999998889999999999887643
No 169
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=41.98 E-value=66 Score=26.50 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc-----------CCCHHHHHHHHHHhCCCCCCCccHHHH
Q psy7068 276 VPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVAT-----------GLSQGILAQIWNLADMDSDGQLSCDEF 338 (487)
Q Consensus 276 lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~s-----------GL~e~eL~~Iw~l~D~D~DG~LdfeEF 338 (487)
.+.++....-..|.+. -..|++..+|+..++... |++..+++++.. +|+|+.++|
T Consensus 10 ~s~e~~~~~~~ql~Q~--~~~Gkv~~ee~n~~~e~~p~~~~~lAk~~G~t~~~l~~~~~------~Gkit~~~~ 75 (75)
T TIGR02675 10 ASAEEADGALIQLSQM--LASGKLRGEEINSLLEALPGALQALAKAMGVTRGELRKMLS------DGKLTADVI 75 (75)
T ss_pred CCHHHHHHHHHHHHHH--HHcCcccHHHHHHHHHHhHHHHHHHHHHhCCCHHHHHHHHH------CCCCccccC
Confidence 3455665555555544 267999999999888653 445555554432 566666654
No 170
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=41.89 E-value=2.5e+02 Score=27.05 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=69.3
Q ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCCCCChhhhhhccchhhhh
Q psy7068 299 LSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLA 378 (487)
Q Consensus 299 Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~LvPps~r~~~~ss~~s~ 378 (487)
.+..||+.-|.+-+.+++.+++++..+- .-|.||=.+|...+-
T Consensus 35 rse~ELr~kL~k~~~~~~~Ie~Vi~~l~--~~~~ldD~~fAe~~i----------------------------------- 77 (174)
T COG2137 35 RSEKELRRKLAKKEFSEEIIEEVIDRLA--EEGYLDDTRFAEAYI----------------------------------- 77 (174)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHH--HcCcccHHHHHHHHH-----------------------------------
Confidence 3557888888888888877777765442 235666666665542
Q ss_pred hcccCCCCccchhHHHHHHHHhhhcCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHH
Q psy7068 379 ANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISN 458 (487)
Q Consensus 379 ~s~~~d~W~~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~ 458 (487)
...-..| =...-|+.-|...|++++.+..++...|.. +++..+..++..
T Consensus 78 -----------------------~~r~~~g-~G~~rl~qeL~qkGi~~~~Ie~aL~~~~~~-------~~~~~a~~~~~k 126 (174)
T COG2137 78 -----------------------RSRSRKG-KGPARLKQELKQKGIDDEIIEEALELIDEE-------DEQERARKVLRK 126 (174)
T ss_pred -----------------------HHHHhcc-cChHHHHHHHHHcCCCHHHHHHHHhccchH-------HHHHHHHHHHHH
Confidence 1111122 234455666667778887777777755533 445555544444
Q ss_pred hhc--CCCCCCCCChhHHHhhcccccccC
Q psy7068 459 KLR--GFDIPPTLPVSLMQSLAGKDKTYD 485 (487)
Q Consensus 459 k~~--G~~~P~sLP~~L~~sl~~~~~~~~ 485 (487)
+.+ +.....++..-++..|-++..+|+
T Consensus 127 k~~~~~~~~~~~~k~Ki~r~L~~rGFs~~ 155 (174)
T COG2137 127 KFKRENKPPDKKEKAKIQRFLLRRGFSYE 155 (174)
T ss_pred HhCccccCcchhHHHHHHHHHHHcCCCHH
Confidence 332 222333566667777776666554
No 171
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=41.58 E-value=85 Score=23.26 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=36.8
Q ss_pred cchhHHHHHHHHhhhcCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHH
Q psy7068 388 VSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSL 435 (487)
Q Consensus 388 ~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l 435 (487)
.+.+....++..|.. +.+.+.+++..+....|++...|..-|..
T Consensus 7 ~~~~~~~~Le~~f~~----~~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (59)
T cd00086 7 FTPEQLEELEKEFEK----NPYPSREEREELAKELGLTERQVKIWFQN 50 (59)
T ss_pred CCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 356677788888865 67999999999999999999999888764
No 172
>KOG4004|consensus
Probab=40.90 E-value=10 Score=37.50 Aligned_cols=50 Identities=14% Similarity=0.345 Sum_probs=38.7
Q ss_pred CCCCCcccHHHHHHHHHhCCCCHHH-HHHHHHHhcCCCCCceeHHHHHHHHH
Q psy7068 404 KPVNGIVTGDQVKGFLMQSGLPVAT-LGQIWSLADTDQDGKMNINEFVIACK 454 (487)
Q Consensus 404 kD~DG~IS~eELr~vL~~~GL~eee-L~~I~~l~D~D~DGkIS~dEFv~aM~ 454 (487)
+..||+||..||.-+-. -=++.+. +...|.-+|.|+||.|+++|+..++-
T Consensus 199 ~p~d~~~sh~el~pl~a-p~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 199 HPIDGYLSHTELAPLRA-PLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred CCccccccccccccccC-CcccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 67899999999875421 1245443 57788999999999999999988764
No 173
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=40.28 E-value=32 Score=28.38 Aligned_cols=38 Identities=21% Similarity=0.497 Sum_probs=24.8
Q ss_pred CCCcccHHHHHHHHHh-----------CCCCHHHHHHHHHHhcCCCCCceeHHHH
Q psy7068 406 VNGIVTGDQVKGFLMQ-----------SGLPVATLGQIWSLADTDQDGKMNINEF 449 (487)
Q Consensus 406 ~DG~IS~eELr~vL~~-----------~GL~eeeL~~I~~l~D~D~DGkIS~dEF 449 (487)
..|+|..+||..++.. .|++..++.++. .+|+|+-++|
T Consensus 27 ~~Gkv~~ee~n~~~e~~p~~~~~lAk~~G~t~~~l~~~~------~~Gkit~~~~ 75 (75)
T TIGR02675 27 ASGKLRGEEINSLLEALPGALQALAKAMGVTRGELRKML------SDGKLTADVI 75 (75)
T ss_pred HcCcccHHHHHHHHHHhHHHHHHHHHHhCCCHHHHHHHH------HCCCCccccC
Confidence 4599999999998863 244444444443 2677776665
No 174
>PLN02222 phosphoinositide phospholipase C 2
Probab=40.05 E-value=77 Score=36.08 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=45.1
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHcC----CCHHHHHHHHHHhCC-CCCCCccHHHHHHHHH
Q psy7068 283 KYTQLFNTTDRTRSGFLSGPQARNIMVATG----LSQGILAQIWNLADM-DSDGQLSCDEFVLAMH 343 (487)
Q Consensus 283 k~~qiF~~lD~D~dG~Is~eELk~~L~~sG----L~e~eL~~Iw~l~D~-D~DG~LdfeEFl~aM~ 343 (487)
+++.+|.++-. ++.++.++|..+|.... .+.+.+++|++.+.. .+.+.++++.|...|.
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 56778888753 57999999999998863 356778888887532 3466799999998773
No 175
>PF05788 Orbi_VP1: Orbivirus RNA-dependent RNA polymerase (VP1); InterPro: IPR008723 This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbivirus. VP1 may have both enzymatic and structural roles in the virus life cycle [].; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=38.18 E-value=39 Score=40.58 Aligned_cols=85 Identities=18% Similarity=0.294 Sum_probs=64.8
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHHhcCCCCCceeHHHHH-------HHHHHHHHhhcCCCC
Q psy7068 395 RFETHFQAMKPVNGIVTGDQVKGFLMQSG--LPVATLGQIWSLADTDQDGKMNINEFV-------IACKLISNKLRGFDI 465 (487)
Q Consensus 395 ~~~~iF~~dkD~DG~IS~eELr~vL~~~G--L~eeeL~~I~~l~D~D~DGkIS~dEFv-------~aM~LV~~k~~G~~~ 465 (487)
+++.|.+.|.=..|+|+.+-+..++.+.| .+.+++.-||.+++.+..=.=.+.||+ .++.|.++-+.|-+.
T Consensus 1123 rID~ILR~DvVMRGfiTsn~Il~vle~iG~~h~a~Dl~~iF~lmNl~~~VA~~Laeyit~~kiRFDa~kL~K~Gi~GDEF 1202 (1301)
T PF05788_consen 1123 RIDSILRGDVVMRGFITSNTILNVLEKIGFGHSASDLATIFTLMNLESKVAERLAEYITSEKIRFDALKLNKRGICGDEF 1202 (1301)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHHhccccchhhHHHHhhcCcCccce
Confidence 44556666666889999999999999998 678999999999987754333334444 356666666789999
Q ss_pred CCCCChhHHHhhcc
Q psy7068 466 PPTLPVSLMQSLAG 479 (487)
Q Consensus 466 P~sLP~~L~~sl~~ 479 (487)
..||=++....+++
T Consensus 1203 sMSLdV~T~~~~d~ 1216 (1301)
T PF05788_consen 1203 SMSLDVCTQEMVDR 1216 (1301)
T ss_pred eeehHHhHHHHHHH
Confidence 99999888777765
No 176
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=37.21 E-value=2.7e+02 Score=27.21 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=22.7
Q ss_pred CCCCCcccHHHHHHHHHhCCCCHHHHHHHHH
Q psy7068 404 KPVNGIVTGDQVKGFLMQSGLPVATLGQIWS 434 (487)
Q Consensus 404 kD~DG~IS~eELr~vL~~~GL~eeeL~~I~~ 434 (487)
.|-|.+....=|..+-..++|++..+.+|=+
T Consensus 155 id~d~~~Er~YL~~LA~aL~L~~~lv~~le~ 185 (188)
T PF04391_consen 155 IDVDTFAERAYLDELAQALGLDPDLVAQLEQ 185 (188)
T ss_pred hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 5667666666666666788999988887754
No 177
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=36.18 E-value=63 Score=28.13 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=31.7
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHhCCCCHHHHHHHHH
Q psy7068 396 FETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWS 434 (487)
Q Consensus 396 ~~~iF~~dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~ 434 (487)
.+.+++.....+|.++..+++.+....|+++.++++++.
T Consensus 51 ~~~i~~~~~~~~~~~~~~~i~~~r~~~gltq~~lA~~lg 89 (127)
T TIGR03830 51 SAALADFYRKVDGLLTPPEIRRIRKKLGLSQREAAELLG 89 (127)
T ss_pred HHHHHHHHHHccCCcCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 334444457889999999999999999999999988763
No 178
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.46 E-value=3.4e+02 Score=27.27 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=24.0
Q ss_pred CCCCCcccHHHHHHHHHhCCCCHHHHHHHHHH
Q psy7068 404 KPVNGIVTGDQVKGFLMQSGLPVATLGQIWSL 435 (487)
Q Consensus 404 kD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l 435 (487)
.|.|.+....=|-..-..+||++..+++|=+.
T Consensus 186 id~d~r~Er~YL~~La~~L~L~dalvd~lE~q 217 (225)
T COG2979 186 IDDDSRMERSYLNALAGALGLPDALVDHLERQ 217 (225)
T ss_pred cCchhHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 67777777766666667889999888887543
No 179
>PLN02228 Phosphoinositide phospholipase C
Probab=34.16 E-value=1.2e+02 Score=34.45 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHcC----CCHHHHHHHHHHhCCC----CCCCccHHHHHHHHH
Q psy7068 283 KYTQLFNTTDRTRSGFLSGPQARNIMVATG----LSQGILAQIWNLADMD----SDGQLSCDEFVLAMH 343 (487)
Q Consensus 283 k~~qiF~~lD~D~dG~Is~eELk~~L~~sG----L~e~eL~~Iw~l~D~D----~DG~LdfeEFl~aM~ 343 (487)
+++.+|..+-. ++.|+.++|..+|.... ...+.+++|+..+... ..|.++++.|...|.
T Consensus 25 ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 25 SIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred HHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 45777777743 36899999999998863 3456778888876543 346799999998773
No 180
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=33.20 E-value=92 Score=25.34 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=17.3
Q ss_pred CCCceeHHHHHHHHHHHHHhh
Q psy7068 440 QDGKMNINEFVIACKLISNKL 460 (487)
Q Consensus 440 ~DGkIS~dEFv~aM~LV~~k~ 460 (487)
..|.|+.++|+.|+.++.+..
T Consensus 39 ~~~lidk~~y~~A~liL~~E~ 59 (62)
T PF06014_consen 39 KSGLIDKKEYLTAKLILRREH 59 (62)
T ss_dssp HTTSS-HHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHH
Confidence 378999999999999988765
No 181
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=32.51 E-value=87 Score=24.92 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHHcCCCHHHHH
Q psy7068 275 AVPHASKLKYTQLFNTTDRTRSGF----LSGPQARNIMVATGLSQGILA 319 (487)
Q Consensus 275 ~lt~eEk~k~~qiF~~lD~D~dG~----Is~eELk~~L~~sGL~e~eL~ 319 (487)
.++.+|++++...|.. .|+ ++..+...+-..+||++..++
T Consensus 7 ~Ft~~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lgl~~~vvK 50 (58)
T TIGR01565 7 KFTAEQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIGVTRKVFK 50 (58)
T ss_pred CCCHHHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhCCCHHHee
Confidence 5789999999999985 477 999999999999999987764
No 182
>PRK14135 recX recombination regulator RecX; Provisional
Probab=32.44 E-value=4.6e+02 Score=26.03 Aligned_cols=71 Identities=21% Similarity=0.190 Sum_probs=39.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHHhhc--CCCCCCCCChhHHHhhcccccccC
Q psy7068 412 GDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISNKLR--GFDIPPTLPVSLMQSLAGKDKTYD 485 (487)
Q Consensus 412 ~eELr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~k~~--G~~~P~sLP~~L~~sl~~~~~~~~ 485 (487)
..-+...|...|++.+.+..+++.++.+.|.. +|+-.+..++..+.+ +...|..+--.++..|-+|.-+|+
T Consensus 178 k~Ki~~~L~rkGf~~~~I~~~l~~~~~e~d~~---~e~e~l~~~~~k~~~k~~~~~~~k~k~K~~~~L~rrGF~~~ 250 (263)
T PRK14135 178 KQKIIQSLLTKGFSYEVIKAALEELDLEQDEE---EEQELLQKELEKAYRKYSKYDGYELKQKLKQALYRKGFSYD 250 (263)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHcccCCChH---HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHH
Confidence 34566778888999999999998876544332 233333323222221 222223344455666666666554
No 183
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=31.11 E-value=1.3e+02 Score=33.98 Aligned_cols=10 Identities=20% Similarity=-0.124 Sum_probs=4.7
Q ss_pred eeeecccccc
Q psy7068 227 FINGWLSTKE 236 (487)
Q Consensus 227 fv~~pl~a~~ 236 (487)
++++|+.+-+
T Consensus 333 vi~~p~fg~~ 342 (574)
T PF07462_consen 333 VIALPLFGNN 342 (574)
T ss_pred eeeccCCCCC
Confidence 4445554433
No 184
>PF05819 NolX: NolX protein; InterPro: IPR008718 This family consists of Rhizobium NolX and Xanthomonas HrpF proteins. The interaction between the plant pathogen Xanthomonas campestris pv. vesicatoria (strain 85-10) and its host plants is controlled by hrp genes (hypersensitive reaction and pathogenicity), which encode a type III protein secretion system. Among type III-secreted proteins are avirulence proteins, effectors involved in the induction of plant defence reactions. HrpF is dispensable for protein secretion but required for AvrBs3 recognition in planta, is thought to function as a translocator of effector proteins into the host cell []. NolX, a Glycine max (Soybean) cultivar specificity protein, is secreted by a type III secretion system (TTSS) and shows homology to HrpF. It is not known whether NolX functions at the bacterium-plant interface or acts inside the host cell. NolX is expressed in planta only during the early stages of nodule development [].; GO: 0009877 nodulation
Probab=30.31 E-value=6.1e+02 Score=28.72 Aligned_cols=64 Identities=9% Similarity=0.189 Sum_probs=41.4
Q ss_pred CccchhHHHHHHHHhhhcCCCCCcccHHHHHHHHH---hCC-CCHHHHHH---------HHHHhcCCCCCceeHHHHHH
Q psy7068 386 WNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLM---QSG-LPVATLGQ---------IWSLADTDQDGKMNINEFVI 451 (487)
Q Consensus 386 W~~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~---~~G-L~eeeL~~---------I~~l~D~D~DGkIS~dEFv~ 451 (487)
-+|+. ...++++|+....--..|+.++|++++. +.| -+...|+. -|+.+-.+.+++|+.++|+.
T Consensus 362 svMT~--nDA~RELYrYSdyLPK~L~~~~f~~IVdG~s~tgKcPPQViAAAqyF~~hpd~W~~l~~g~~~~v~k~dflq 438 (624)
T PF05819_consen 362 SVMTE--NDAMRELYRYSDYLPKNLSLEDFKQIVDGDSKTGKCPPQVIAAAQYFVDHPDEWKQLYGGPSDKVSKEDFLQ 438 (624)
T ss_pred cccch--hHHHHHHHHhhhccccccCHHHHHhHhcCccccCCCCHHHHHHHHHHHhChHHHHHhcCCCccccchhHHHH
Confidence 45553 3456667765345556799999999997 334 34444422 36666456779999999985
No 185
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=30.00 E-value=42 Score=31.20 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=24.1
Q ss_pred CcccHHHHHHHHHHcCCCHHHHHHHHHHhC-------CCCCCCccHHHHHHHHH
Q psy7068 297 GFLSGPQARNIMVATGLSQGILAQIWNLAD-------MDSDGQLSCDEFVLAMH 343 (487)
Q Consensus 297 G~Is~eELk~~L~~sGL~e~eL~~Iw~l~D-------~D~DG~LdfeEFl~aM~ 343 (487)
+.|+..|+.++-+.+..+...|+++|+.+. -+.++.|+|+.|...|.
T Consensus 6 ~~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~ 59 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMK 59 (138)
T ss_dssp S-S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHH
T ss_pred eccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHH
Confidence 455665555544444333444555555553 23456899999999985
No 186
>PLN02223 phosphoinositide phospholipase C
Probab=29.83 E-value=1.2e+02 Score=34.33 Aligned_cols=61 Identities=7% Similarity=-0.077 Sum_probs=43.1
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHH---HhC----CCCHHHHHHHHHHhcCC--------CCCceeHHHHHHHHH
Q psy7068 394 TRFETHFQAMKPVNGIVTGDQVKGFL---MQS----GLPVATLGQIWSLADTD--------QDGKMNINEFVIACK 454 (487)
Q Consensus 394 ~~~~~iF~~dkD~DG~IS~eELr~vL---~~~----GL~eeeL~~I~~l~D~D--------~DGkIS~dEFv~aM~ 454 (487)
...+++|..+.++.|.++.+.|+++| .+. +...++.+.|++.+-.. +.+.++++.|..++.
T Consensus 16 ~~v~~~f~~~~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 16 DLILNFFGNEFHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 34566777667889999999999998 422 35667777777654322 236699999998873
No 187
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=29.66 E-value=1.1e+02 Score=26.65 Aligned_cols=48 Identities=23% Similarity=0.291 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHH
Q psy7068 276 VPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWN 323 (487)
Q Consensus 276 lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~ 323 (487)
++.+...++.+....+=...+|.+.+.+++.+....|++..++.+++.
T Consensus 42 ~~~e~~~~~~~~i~~~~~~~~~~~~~~~i~~~r~~~gltq~~lA~~lg 89 (127)
T TIGR03830 42 LDPEESKRNSAALADFYRKVDGLLTPPEIRRIRKKLGLSQREAAELLG 89 (127)
T ss_pred EcHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 455566555554444446788999999999999999999998888763
No 188
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=28.89 E-value=1.4e+02 Score=24.94 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=7.6
Q ss_pred HHHHHHhcCCCCCceeHHH
Q psy7068 430 GQIWSLADTDQDGKMNINE 448 (487)
Q Consensus 430 ~~I~~l~D~D~DGkIS~dE 448 (487)
..+|..+- .||.|+-.|
T Consensus 78 ~~l~~vA~--ADG~~~~~E 94 (106)
T cd07316 78 EFLFQIAY--ADGELSEAE 94 (106)
T ss_pred HHHHHHHH--HcCCCCHHH
Confidence 33444443 245555544
No 189
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=28.38 E-value=1.8e+02 Score=21.40 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=35.9
Q ss_pred cchhHHHHHHHHhhhcCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHH
Q psy7068 388 VSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSL 435 (487)
Q Consensus 388 ~s~edk~~~~~iF~~dkD~DG~IS~eELr~vL~~~GL~eeeL~~I~~l 435 (487)
.+++....++..|.. +-+.+.+++..+...+|++...|..-|..
T Consensus 7 ~~~~~~~~L~~~f~~----~~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (56)
T smart00389 7 FTPEQLEELEKEFQK----NPYPSREEREELAAKLGLSERQVKVWFQN 50 (56)
T ss_pred CCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHHCcCHHHHHHhHHH
Confidence 466778888888854 23899999999999999999988887764
No 190
>KOG0719|consensus
Probab=27.83 E-value=6.4e+02 Score=25.95 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=37.6
Q ss_pred CHHH-HHHHHHHHHHhCCCCCCcccHHHHHHHHHHc-----CCCHHHHHHHHHH---hCCCCCCCc--cHHHHHHHHH
Q psy7068 277 PHAS-KLKYTQLFNTTDRTRSGFLSGPQARNIMVAT-----GLSQGILAQIWNL---ADMDSDGQL--SCDEFVLAMH 343 (487)
Q Consensus 277 t~eE-k~k~~qiF~~lD~D~dG~Is~eELk~~L~~s-----GL~e~eL~~Iw~l---~D~D~DG~L--dfeEFl~aM~ 343 (487)
++++ +..|+++=..+=+|.+-.=+..|.+.-|..+ -|++++-+.+++. +| |-+|-| ++.||..+|+
T Consensus 27 ~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id-d~~~d~~~~~~e~~~~iy 103 (264)
T KOG0719|consen 27 TDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID-DESGDIDEDWLEFWRAIY 103 (264)
T ss_pred CHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC-CccchhhhHHHHHHHHHH
Confidence 4444 4567777777778777544445555555554 2577777878765 23 333433 3445554443
No 191
>KOG2301|consensus
Probab=27.48 E-value=41 Score=42.38 Aligned_cols=68 Identities=12% Similarity=0.133 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC----C--CHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q psy7068 275 AVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATG----L--SQGILAQIWNLADMDSDGQLSCDEFVLAMH 343 (487)
Q Consensus 275 ~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sG----L--~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~ 343 (487)
.+++.+.++|.++|+.+|++..|+|...+++.+++.+. + +.+. +-|--.+-...|+.++|.+-+-++.
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHH
Confidence 48889999999999999999999999999999999873 1 1111 1121223455888999998777664
No 192
>PLN02230 phosphoinositide phospholipase C 4
Probab=27.06 E-value=1.9e+02 Score=33.21 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC-----CCHHHHHHHHHHhC-------CCCCCCccHHHHHHHHH
Q psy7068 281 KLKYTQLFNTTDRTRSGFLSGPQARNIMVATG-----LSQGILAQIWNLAD-------MDSDGQLSCDEFVLAMH 343 (487)
Q Consensus 281 k~k~~qiF~~lD~D~dG~Is~eELk~~L~~sG-----L~e~eL~~Iw~l~D-------~D~DG~LdfeEFl~aM~ 343 (487)
+.+++.+|.++-. +++.++.++|..+|.... .+.++.++|+..+- .-+.+.|+++.|...|.
T Consensus 28 ~~ei~~lf~~~s~-~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 28 VADVRDLFEKYAD-GDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred cHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 3467889999854 448999999999998864 24556666665431 12345699999998763
No 193
>KOG4849|consensus
Probab=26.85 E-value=3.9e+02 Score=28.93 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=11.2
Q ss_pred eeeeeecceEeeecCCCCC
Q psy7068 125 CMTIQAKGGYLIVSGGGSG 143 (487)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~g 143 (487)
--.|-.+|+--++-..--|
T Consensus 186 ~~~~~~~G~~R~~~~~~~G 204 (498)
T KOG4849|consen 186 EEGCVNMGTIRIGAGGQTG 204 (498)
T ss_pred ccccccccceeecCCCCCC
Confidence 3456677777666554444
No 194
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=26.63 E-value=1.3e+02 Score=22.53 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHH
Q psy7068 302 PQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVL 340 (487)
Q Consensus 302 eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~ 340 (487)
+|+...|..+|+++.++.++...+.. ...++.+|.+.
T Consensus 4 ~d~~~AL~~LGy~~~e~~~av~~~~~--~~~~~~e~~ik 40 (47)
T PF07499_consen 4 EDALEALISLGYSKAEAQKAVSKLLE--KPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHHH--STTS-HHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhc--CCCCCHHHHHH
Confidence 68889999999999999999988865 34466777654
No 195
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=26.43 E-value=2.5e+02 Score=22.81 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=8.5
Q ss_pred CCCCCcccHHHHH
Q psy7068 404 KPVNGIVTGDQVK 416 (487)
Q Consensus 404 kD~DG~IS~eELr 416 (487)
..-||.++..|..
T Consensus 83 a~aDG~~~~~E~~ 95 (104)
T cd07177 83 ALADGELDPEERA 95 (104)
T ss_pred HHhccCCCHHHHH
Confidence 4567777766654
No 196
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=26.08 E-value=1.3e+02 Score=30.67 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=27.5
Q ss_pred CCCCCcccHHHHH---HHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q psy7068 404 KPVNGIVTGDQVK---GFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIAC 453 (487)
Q Consensus 404 kD~DG~IS~eELr---~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM 453 (487)
.--||.|+..|+. .++...+++.++-+.+..+++.......++++|+..+
T Consensus 66 AkADG~Vse~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~ 118 (267)
T PRK09430 66 AKAKGRVTEADIRIASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQF 118 (267)
T ss_pred HhcCCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHH
Confidence 3557777777765 2333457776663333344443334446666666544
No 197
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=26.06 E-value=1.3e+02 Score=26.80 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHH
Q psy7068 315 QGILAQIWNLADMDSDGQLSCDEFVLAM 342 (487)
Q Consensus 315 e~eL~~Iw~l~D~D~DG~LdfeEFl~aM 342 (487)
...+++-|+.+-. ||.|....|..++
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI 54 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI 54 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc
Confidence 5677777777665 8999999998876
No 198
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=26.01 E-value=1.4e+02 Score=22.20 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHH
Q psy7068 412 GDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVI 451 (487)
Q Consensus 412 ~eELr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~ 451 (487)
.+|+...|..+|..+.++..+++.+.. ...++.+|.+.
T Consensus 3 ~~d~~~AL~~LGy~~~e~~~av~~~~~--~~~~~~e~~ik 40 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQKAVSKLLE--KPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHH--STTS-HHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhc--CCCCCHHHHHH
Confidence 368889999999999999999998875 44456676554
No 199
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=25.81 E-value=2.9e+02 Score=30.64 Aligned_cols=93 Identities=12% Similarity=0.176 Sum_probs=57.7
Q ss_pred CCCCccHHHHHHHHHHhHhhhCCCCCCCCCCCCCCChhhhhhccchhhhhhcccCCCCccchhHHHHHHHHhhhc----C
Q psy7068 329 SDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAM----K 404 (487)
Q Consensus 329 ~DG~LdfeEFl~aM~Lv~~a~~g~~lP~~LP~~LvPps~r~~~~ss~~s~~s~~~d~W~~s~edk~~~~~iF~~d----k 404 (487)
..|+.++++|+..|..+...-.-..+-.-+|...... ..+.-.++...-.+++.|.+.. .
T Consensus 323 ~~g~FtL~Df~~Ql~~m~kmGpl~~ll~miPG~~~~~----------------~~~~~~~~e~~~kr~~aIi~SMT~~Er 386 (451)
T COG0541 323 KKGKFTLEDFLEQLEQMKKMGPLSKLLSMIPGMGMKD----------------SDKDIELDEKKLKRIEAIIDSMTPEER 386 (451)
T ss_pred HhCCCCHHHHHHHHHHHHccCCHHHHHHhCCCCCCCC----------------chhhhhccHHHHHHHHHHHHcCCHHHh
Confidence 3578999999998865554221112222222111000 0111123334456677777753 4
Q ss_pred CCCCcccHHHHHHHHHhCCCCHHHHHHHHHHhc
Q psy7068 405 PVNGIVTGDQVKGFLMQSGLPVATLGQIWSLAD 437 (487)
Q Consensus 405 D~DG~IS~eELr~vL~~~GL~eeeL~~I~~l~D 437 (487)
++...|+....+++..-+|.+..++.++++.++
T Consensus 387 ~nP~ii~~SR~rRIA~GSG~sv~dVn~Llkq~~ 419 (451)
T COG0541 387 ENPDIINASRKRRIARGSGTSVQDVNKLLKQFK 419 (451)
T ss_pred hCccccChHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 678889999999999999999999999988654
No 200
>PHA03378 EBNA-3B; Provisional
Probab=25.68 E-value=3.9e+02 Score=31.37 Aligned_cols=34 Identities=35% Similarity=0.432 Sum_probs=20.2
Q ss_pred hhhhhhHHHHHHHhhhhcC---CCcc-cchhhhhcCCC
Q psy7068 31 ENYEKGQAELERRRKALEL---PHQS-SFNRALCATTP 64 (487)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~ 64 (487)
.-.||.....|.|--|--| |||- +-.||-|..|-
T Consensus 507 dlle~d~e~~eq~vmat~l~~~p~~p~a~r~~pcvy~~ 544 (991)
T PHA03378 507 DLLEKDDEDMEQRVMATLLPPSPPQPRAGRRAPCVYTE 544 (991)
T ss_pred HHHhhchHHHHHHHHHhhCCCCCCCCcccccCCceeec
Confidence 3466777777777766554 3443 33456676543
No 201
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=25.65 E-value=79 Score=20.31 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=11.0
Q ss_pred cCCCCCceeHHHHHHHH
Q psy7068 437 DTDQDGKMNINEFVIAC 453 (487)
Q Consensus 437 D~D~DGkIS~dEFv~aM 453 (487)
|.|+||+|+--+|+.+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 56777877777776543
No 202
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=25.34 E-value=74 Score=26.20 Aligned_cols=57 Identities=9% Similarity=0.079 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHh-CCC---CCCCccHHHHHHH
Q psy7068 282 LKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLA-DMD---SDGQLSCDEFVLA 341 (487)
Q Consensus 282 ~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~-D~D---~DG~LdfeEFl~a 341 (487)
+++.+.|+.+ .++.++|+.+||+..|..-.. +.|.+.+..+ +.+ .-|.+||..|+..
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe~a--ey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTPEQA--EYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-CCCH--HHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCcHHH--HHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 4678899999 779999999999987643221 2222211111 111 2267999988754
No 203
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=25.14 E-value=87 Score=24.92 Aligned_cols=40 Identities=10% Similarity=0.214 Sum_probs=32.8
Q ss_pred cchhHHHHHHHHhhhcCCCCCc----ccHHHHHHHHHhCCCCHHHHHH
Q psy7068 388 VSRHERTRFETHFQAMKPVNGI----VTGDQVKGFLMQSGLPVATLGQ 431 (487)
Q Consensus 388 ~s~edk~~~~~iF~~dkD~DG~----IS~eELr~vL~~~GL~eeeL~~ 431 (487)
.+.+.+..+++.|. ..|+ ++..+..++...+||++..++-
T Consensus 8 Ft~~Q~~~Le~~fe----~~~y~~~~~~~~~r~~la~~lgl~~~vvKV 51 (58)
T TIGR01565 8 FTAEQKEKMRDFAE----KLGWKLKDKRREEVREFCEEIGVTRKVFKV 51 (58)
T ss_pred CCHHHHHHHHHHHH----HcCCCCCCCCHHHHHHHHHHhCCCHHHeee
Confidence 46788889999995 4688 9999999999999999876654
No 204
>COG1508 RpoN DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]
Probab=24.98 E-value=9.7e+02 Score=26.61 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC-CCHHHHHHHHHH---hCCCCCCCccHHHHHHH
Q psy7068 275 AVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATG-LSQGILAQIWNL---ADMDSDGQLSCDEFVLA 341 (487)
Q Consensus 275 ~lt~eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sG-L~e~eL~~Iw~l---~D~D~DG~LdfeEFl~a 341 (487)
.+++.++.....+-+.+| .+||+... +..+....+ ...++++++|.. +|.-|=|-=++.|++..
T Consensus 104 ~~s~~e~~Ia~~lI~~Ld--d~GYl~~~-le~~~~~l~~~~~~eve~vl~~iQ~ldP~GV~Ar~l~EcL~l 171 (444)
T COG1508 104 PLSDTERAIATYLIDALD--DEGYLTES-LEEIAELLGSVDEEEVEKVLARIQSLDPAGVGARDLRECLLL 171 (444)
T ss_pred CCChHHHHHHHHHHhhcC--cCCCcccC-HHHHHHhcccccHHHHHHHHHHHhcCCCCccccCcHHHHHHH
Confidence 356777777777788775 58888876 666666667 777788777765 78888888888887643
No 205
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=24.59 E-value=1.1e+02 Score=26.46 Aligned_cols=38 Identities=13% Similarity=0.003 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHH
Q psy7068 282 LKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWN 323 (487)
Q Consensus 282 ~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~ 323 (487)
+.++..|+.+- ..|...+.+.+++.+||++.+|+.|-.
T Consensus 4 ~~l~~~f~~i~----~~V~~~~Wk~laR~LGLse~~I~~i~~ 41 (96)
T cd08315 4 ETLRRSFDHFI----KEVPFDSWNRLMRQLGLSENEIDVAKA 41 (96)
T ss_pred hHHHHHHHHHH----HHCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45677777762 246778999999999999999998754
No 206
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=24.30 E-value=1.2e+02 Score=25.37 Aligned_cols=10 Identities=20% Similarity=0.425 Sum_probs=5.3
Q ss_pred CCCCcccHHH
Q psy7068 405 PVNGIVTGDQ 414 (487)
Q Consensus 405 D~DG~IS~eE 414 (487)
.-||.++..|
T Consensus 89 ~aDG~~~~~E 98 (111)
T cd07176 89 AADGEVDPEE 98 (111)
T ss_pred HccCCCCHHH
Confidence 4455555554
No 207
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=23.82 E-value=63 Score=33.12 Aligned_cols=38 Identities=45% Similarity=0.675 Sum_probs=32.3
Q ss_pred ceeeeecce-----eeeeeeecccceeeeeecceEeeecCCCCCCC
Q psy7068 105 THWYLQGKK-----YHTHVFTAGQFCMTIQAKGGYLIVSGGGSGPS 145 (487)
Q Consensus 105 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 145 (487)
--|||.|+- -||||-||-- ||--+||-.|---+.|||-
T Consensus 161 ~g~yldGrvsavvGTHTHV~TaD~---rIL~~GTayiTDvGMtG~~ 203 (266)
T COG1692 161 FGWYLDGRVSAVVGTHTHVPTADE---RILPKGTAYITDVGMTGPY 203 (266)
T ss_pred hheEEcCeEEEEEeccCccccccc---eecCCCcEEEecCcccccc
Confidence 358999985 5999999974 7889999999999999974
No 208
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=22.26 E-value=1.4e+02 Score=24.62 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHhH
Q psy7068 313 LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCD 346 (487)
Q Consensus 313 L~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~Lv~ 346 (487)
++.+....|-..++.=+.++|+.+||+..|+.+.
T Consensus 22 l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IV 55 (70)
T PF12174_consen 22 LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIV 55 (70)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4444455555555544567788888887776554
No 209
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=21.70 E-value=3.9e+02 Score=24.23 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhCCCC--CCcccHHHHHHHHHHc--------C-CC-----------HHHHHHHHHHhCCCCCCCccHHH
Q psy7068 280 SKLKYTQLFNTTDRTR--SGFLSGPQARNIMVAT--------G-LS-----------QGILAQIWNLADMDSDGQLSCDE 337 (487)
Q Consensus 280 Ek~k~~qiF~~lD~D~--dG~Is~eELk~~L~~s--------G-L~-----------e~eL~~Iw~l~D~D~DG~LdfeE 337 (487)
+.....++|+.+..+. |..|+..|+..+|..+ + +. +--+.-+|+.+|.+++|+|..-+
T Consensus 39 ~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls 118 (127)
T PF09068_consen 39 DLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLS 118 (127)
T ss_dssp -HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHH
T ss_pred eHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhH
Confidence 3444556666655543 3557777766665443 1 11 11355688999999999999999
Q ss_pred HHHHHH
Q psy7068 338 FVLAMH 343 (487)
Q Consensus 338 Fl~aM~ 343 (487)
|..++.
T Consensus 119 ~KvaL~ 124 (127)
T PF09068_consen 119 FKVALI 124 (127)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988774
No 210
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=21.70 E-value=6.9e+02 Score=23.97 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=28.8
Q ss_pred hCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q psy7068 291 TDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343 (487)
Q Consensus 291 lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D~DG~LdfeEFl~aM~ 343 (487)
-+.+.+|+.....--. ++...-|+.+...-|.+.++.|++.+|...|.
T Consensus 63 p~etd~~ftkVhkhmP-----~~~~s~Lehllg~~~~~~n~~i~~~~ff~~lQ 110 (175)
T PF04876_consen 63 PIETDPLFTKVHKHMP-----EFCHSFLEHLLGGEDDSTNGLIDIGKFFDILQ 110 (175)
T ss_pred ccccCcchHHHHHHhh-----HHHHHHHHHHhcCCcCCcccceeHHHHHHHHH
Confidence 4455666655432111 12234566666555555678899999999884
No 211
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=21.65 E-value=2.7e+02 Score=24.29 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHHhhcCC--CCCCCCChhHHHhhccccccc
Q psy7068 412 GDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISNKLRGF--DIPPTLPVSLMQSLAGKDKTY 484 (487)
Q Consensus 412 ~eELr~vL~~~GL~eeeL~~I~~l~D~D~DGkIS~dEFv~aM~LV~~k~~G~--~~P~sLP~~L~~sl~~~~~~~ 484 (487)
..-++.-|.+.|++.+.++..+. .+++.-.+..++.++.... ......-..++..|-++.-+|
T Consensus 45 ~~~I~~~L~~kGi~~~~i~~~l~----------~~~~~e~a~~~~~kk~~~~~~~~~~~~~~K~~~~L~rrGF~~ 109 (121)
T PF02631_consen 45 PRRIRQKLKQKGIDREIIEEALE----------EYDEEEEALELAEKKYRRYRKPSDRKRKQKLIRFLMRRGFSY 109 (121)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHT----------CS-HHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHCCChHHHHHHHH----------HhhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCCH
Confidence 33455556666777777776665 1222222555555555333 233344445555555555444
No 212
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=20.78 E-value=1.5e+02 Score=20.70 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=18.8
Q ss_pred CCceeHHHHHHHHHHHHHhh-cCCCCCC
Q psy7068 441 DGKMNINEFVIACKLISNKL-RGFDIPP 467 (487)
Q Consensus 441 DGkIS~dEFv~aM~LV~~k~-~G~~~P~ 467 (487)
.|+|+++||+.+..-+..-. ...++|.
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngRlPn 29 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGRLPN 29 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCCCC
Confidence 57888889888877666655 3555554
No 213
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=20.46 E-value=1e+02 Score=25.59 Aligned_cols=48 Identities=10% Similarity=0.257 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Q psy7068 279 ASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMD 328 (487)
Q Consensus 279 eEk~k~~qiF~~lD~D~dG~Is~eELk~~L~~sGL~e~eL~~Iw~l~D~D 328 (487)
.....++++...- ...|+|+.+++..+|....++.+.+..|+..+...
T Consensus 4 ~~~~~i~~Li~~g--K~~G~lT~~eI~~~L~~~~~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 4 QYEEAIKKLIEKG--KKKGYLTYDEINDALPEDDLDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHHHHHHHHHHHH--HHHSS-BHHHHHHH-S-S---HHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHH--hhcCcCCHHHHHHHcCccCCCHHHHHHHHHHHHHC
Confidence 3455666666553 26799999999999988888888899888776543
No 214
>KOG1365|consensus
Probab=20.24 E-value=2.7e+02 Score=30.49 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=17.9
Q ss_pred cceeeeeecceEeee------------cCCCCCCCCCccCCCC
Q psy7068 123 QFCMTIQAKGGYLIV------------SGGGSGPSPLSTSIVS 153 (487)
Q Consensus 123 ~~~~~~~~~~~~~~~------------~~~~~g~~~~~~~~~~ 153 (487)
|.|..---|+.|+-+ +.+..|+..-++++-.
T Consensus 342 qk~hk~~mk~RYiEvfp~S~eeln~vL~~g~~g~~~q~PPP~p 384 (508)
T KOG1365|consen 342 QKCHKKLMKSRYIEVFPCSVEELNEVLSGGLVGQQHQVPPPAP 384 (508)
T ss_pred HHHHHhhcccceEEEeeccHHHHHHHHhcCcccccCCCCCCCC
Confidence 344444446677665 5667777666555533
Done!